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Oryza sativa
cluster # 12621 cluster # 12621       Sequences # 11       consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12621#0 length = 1353 sequences # 8  
consensus_12621#1 length = 713 sequences # 1  
 consensus_12621#2 length = 550 sequences # 1  
consensus_12621#3 length = 207 sequences # 1  
consensusID : consensus_12621#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1353
fasta sequence 
                              [TTCACCTCCTAGGAAAGCATCTCCTGCTCCTGAATCAGTTGTTCTCCACATTGATCATTTGTCCAGGAATGTTAATGAAGCTCATTTGAAAGAGATATTCGGAAACTTTGGTGAAGTGGTTAACGTGGAGCTATCCATGGATCGAATGGTCAACCTTCCTCGTGGGTATGGATATATTGAGTTCAAGAAGAGAACTGATGCTGAGAAAGCTCTTCTTTACATGGACGGCGGTCAAATTGATGGGAATGTTGTGAAGTTGAGATTCACACTTGCACCACGGCAAAGGGCTTCTTCACCAATGAAGGCGCCTCCCCCTCCCCCAAAAAGAGATGTTCCTCATAATGAGAAAGGCGCTCCTAGTGCTGAAAAGGATGTGCAGCAGCGCAGGGAACCATCCCCACGAAGGAAGCCAGCTTCACCTCCACGCAAAAGAACTCCTCCAAACCGAAGGATTGAATCTCCCAGGCGGCAACCTGATCCATCTCCTAGGCGTCGTCCTGATTCTCCACCTATTCGTCGTCGAGCAGATGCTTCGCCTGTCAGGCGTGGTGACACACCTCCTCGTCGGAGACCAGGATCTCCAGTGAGAAGGCGTTCTCCCTCTCCACCACCTAGAAGGCGTAGATCACCAATGCGTCCTTCACCTAGGAGGCTTCGTGGAAGCCCATCACCACGCAGACGCTCCCCTGGGCCCATTAGACGGCGGTCACCACCACCACCCCCAAGGCGGCCAAGAAGCCCTCCTGGAAGAAGGCTACCACCTCCACGTCGTCATAGCCGTTCTCCCCCGCCTCGTCGTCCCCCTCATTCACGTTCCAGATCAATTTCTCCTCGAACCAGGCGAGGACCTCCATTGAGGCGTGGAAGGTCTGATTCATCGTATTCTCGATCACCCAGTCCTCCAAGAAAGGGACCAAGAAGGGTATCAAGGAGCCGCACCCCCCCAAGGCATCGTAGAGGAAGAAGCATCTCTAGCGACAGCCGGAGCAGCAGCTCACCTTCCCCGAGGCGCAGGTAGAACTCCTGACATTGCGTTCCTGGCAGGTAAAACTTCTTTTGTTTCTTGACTATCACTATCGTTTGCCTGTGCTTGTGTCTTTCTGAGAGCTCAAGCGGTTGGTTTGAGGGGATACAGAGAACTCTGCTTAAAAGCTTTCCAGTTAATCTAGATTACCAGTGGAGTCTAGTCTGTGATCTGTAGTTGTCTACTCAGACTCTTGTTGGCATTGGTTATGTAGCTCTTCAGTATTATCTGTTCTAACTTCGTGACTCTTGCATTCCGAACCTGAATATTCTGTGGTGACACTTGTTCTTAATACTGTTATCGTTCGAAGAAGTTCCGACTTATGTTGA]

[+] EMBL AK070420             [TTCACCTCCTAGGAAAGCATCTCCTGCTCCTGAATCAGTTGTTCTCCACATTGATCATTTGTCCAGGAATGTTAATGAAGCTCATTTGAAAGAGATATTCGGAAACTTTGGTGAAGTGGTTAACGTGGAGCTATCCATGGATCGAATGGTCAACCTTCCTCGTGGGTATGGATATATTGAGTTCAAGAAGAGAACTGATGCTGAGAAAGCTCTTCTTTACATGGACGGCGGTCAAATTGATGGGAATGTTGTGAAGTTGAGATTCACACTTGCACCACGGCAAAGGGCTTCTTCACCAATGAAGGCGCCTCCCCCTCCCCCAAAAAGAGATGTTCCTCATAATGAGAAAGGCGCTCCTAGTGCTGAAAAGGATGTGCAGCAGCGCAGGGAACCATCCCCACGAAGGAAGCCAGCTTCACCTCCACGCAAAAGAACTCCTCCAAACCGAAGGATTGAATCTCCCAGGCGGCAACCTGATCCATCTCCTAGGCGTCGTCCTGATTCTCCACCTATTCGTCGTCGAGCAGATGCTTCGCCTGTCAGGCGTGGTGACACACCTCCTCGTCGGAGACCAGGATCTCCAGTGAGAAGGCGTTCTCCCTCTCCACCACCTAGAAGGCGTAGATCACCAATGCGTCCTTCACCTAGGAGGCTTCGTGGAAGCCCATCACCACGCAGACGCTCCCCTGGGCCCATTAGACGGCGGTCACCACCACCACCCCCAAGGCGGCCAAGAAGCCCTCCTGGAAGAAGGCTACCACCTCCACGTCGTCATAGCCGTTCTCCCCCGCCTCGTCGTCCCCCTCATTCACGTTCCAGATCAATTTCTCCTCGAACCAGGCGAGGACCTCCATTGAGGCGTGGAAGGTCTGATTCATCGTATTCTCGATCACCCAGTCCTCCAAGAAAGGGACCAAGAAGGGTATCAAGGAGCCGCACCCCCCCAAGGCATCGTAGAGGAAGAAGCATCTCTAGCGACAGCCGGAGCAGCAGCTCACCTTCCCCGAGGCGCAGGTAGAACTCCTGACATTGCGTTCCTGGCAGGTAAAACTTCTTTTGTTTCTTGACTATCACTATCGTTTGCCTGTGCTTGTGTCTTTCTGAGAGCTCAAGCGGTTGGTTTGAGGGGATACAGAGAACTCTGCTTAAAAGCTTTCCAGTTAATCTAGATTACCAGTGGAGTCTAGTCTGTGATCTGTAGTTGTCTACTCAGACTCTTGTTGGCATTGGTTATGTAGCTCTTCAGTATTATCTGTTCTAACTTCGTGACTCTTGCATTCCGAACCTGAATATTCTGTGGTGACACTTGTTCTTAATACTG                                ]
[+] EMBL CB646711             [TTCACCTCCTAGGAAAGCATCTCCTGCTCCTGAATCAGTTGTTCTCCACATTGATCATTTGTCCAGGAATGTTAATGAAGCTCATTTGAAAGAGATATTCGGAAACTTTGGTGAAGTGGTTAACGTGGAGCTATCCATGGATCGAATGGTCAACCTTCCTCGTGGGTATGGATATATTGAGTTCAAGAAGAGAACTGATGCTGAGAAAGCTCTTCTTTACATGGACGGCGGTCAAATTGATGGGAATGTTGTGAAGTTGAGATTCACACTTGCACCACGGCAAAGGGCTTCTTCACCAATGAAGGCGCCTCCCCCTCCCCCAAAAAGAGATGTTCCTCATAATGAGAAAGGCGCTCCTAGTGCTGAAAAGGATGTGCAGCAGCGCAGGGAACCATCCCCACGAAGGAAGCCAGCTTCACCTCCACGCAAAAGAACTCCTCCAAACCGAAGGATTGAATCTCCCAGGCGGCAACCTGATCCATCTCCTAGGCGTCGTCCTGATTCTCCACCTATTCGTCGTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB655125             [TTCACCTCCTAGGAAAGCATCTCCTGCTCCTGAATCAGTTGTTCTCCACATTGATCATTTGTCCAGGAATGTTAATGAAGCTCATTTGAAAGAGATATTCGGAAACTTTGGTGAAGTGGTTAACGTGGAGCTATCCATGGATCGAATGGTCAACCTTCCTCGTGGGTATGGATATATTGAGTTCAAGAAGAGAACTGATGCTGAGAAAGCTCTTCTTTACATGGACGGCGGTCAAATTGATGGGAATGTTGTGAAGTTGAGATTCACACTTGCACCACGGCAAAGGGCTTCTTCACCAATGAAGGCGCCTCCCCCTCCCCCAAAAAGAGATGTTCCTCATAATGAGAAAGGCGCTCCTAGTGCTGAAAAGGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB684132             [                                                   TGATCATTTGTCCAGGAATGTTAATGAAGCTCATTTGAAAGAGATATTCGGAAACTTTGGTGAAGTGGTTAACGTGGAGCTATCCATGGATCGAATGGTCAACCTTCCTCGTGGGTATGGATATATTGAGTTCAAGAAGAGAACTGATGCTGAGAAAGCTCTTCTTTACATGGACGGCGGTCAAATTGATGGGAATGTTGTGAAGTTGAGATTCACACTTGCACCACGGCAAAGGGCTTCTTCACCAATGAAGGCGCCTCCCCCTCCCCCAAAAAGAGATGTTCCTCATAATGAGAAAGGCGCTCCTAGTGCTGAAAAGGATGTGCAGCAGCGCAGGGAACCATCCCCACGAAGGAAGCCAGCTTCACCTCCACGCAAAAGAACTCCTCCAAACCGAAGGATTGAATCTCCCAGGCGGCAACCTGATCCATCTCCTAGGCGTCGTCCTGATTCTCCACCTATTCGTCGTCGAGCAGATGCTTCGCCTGTCAGGCGTGGTGACACACCTCCTCGTCGGAGACCAGGATCTCCAGTGAGAAGGCGTTCTCCCTCTCCACCACCTAGAAGGCGTAGATCACCAATGCGTCCTTCACCTAGGAGGCTTCGTGGAAGCCCATCACCACGCAGACGCTCCCCTGGGCCCATTAGACGGCGGTCACCACCACCACCCCCAAGGCGGCCAAGAAGCCCTCCTGGAAGAAGGCTACCACCTCCACGTCGTCATAGCCGTTCTCCCCCGCCTCGTCGTCCCCCTCATTCACGTTCCAGATCAATTTCTCCTCGAACCAGGCGAGGACCTCCATTGAGGCGTGGAAAGTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CA756671             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CCACCTATTCGTCGTCGAGCAGATGCTTCGCCTGTCAGGCGTGGTGACACACCTCCTCGTCGGAGACCAGGATCTCCAGTGAAAAGGCGTTCTCCCTCTCCACCACCTAGAAGGCGTAGATCACCAATGCGTCCTTCACCTAGGAGGCTTCGTGGAAGCCCATCACCACGCAGACGCTCCCCTGGGCCCATTAGACGGCGGTCACCACCACCACCCCCAAGGCGGCCAAGAAGCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CB684133             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGGATCTCCAGTGAGAAGGCGTTCTCCCTCTCCACCACCTAGAAGGCGTAGATCACCAATGCGTCCTTCACCTAGGAGGCTTCGTGGAAGCCCATCACCACGCAGACGCTCCCCTGGGCCCATTAGACGGCGGTCACCACCACCACCCCCAAGGCGGCCAAGAAGCCCTCCTGGAAGAAGGCTACCACCTCCACGTCGTCATAGCCGTTCTCCCCCGCCTCGTCGTCCCCCTCATTCACGTTCCAGATCAATTTCTCCTCGAACCAGGCGAGGACCTCCATTGAGGCGTGGAAGGTCTGATTCATCGTATTCTCGATCACCCAGTCCTCCAAGAAAGGGACCAAGAAGGGTATCAAGGAGCCGCACCCCCCCAAGGCATCGTAGAGGAAGAAGCATCTCTAGCGACAGCCGGAGCAGCAGCTCACCTTCCCCGAGGCGCAGGTAGAACTCCTGACATTGCGTTCCTGGCAGGTAAAACTTCTTTTGTTTCTTGACTATCACTATCGTTTGCCTGTGCTTGTGTCTTTCTGAGAGCTCAAGCGGTTGGTTTGAGGGGATACAGAGAACTCTGCTTAAAAGCTTTCCAGTTAATCTAGATTACCAGTGGAGTCTAGTCTGTGATCTGTAGTTGTCTACTCAGACTCTTGTTGGCATTGGTTATGTAGCTCTTCAGTATTATCTGTTCTAACTTCGTGACTCTTGCATTCCGAACCTGAATATTCTGTGGAGGCACTTGTTCTTAATACTGTTATCGTTCGAAGA                  ]
[-] EMBL CB655126             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CGTTCTCCCTCTCCACCACGTAGTAGGCGTAGATCGCCAATGCGTCCTTCTCTTAGGAGGCTTCGTGGAAGCCCATCACCACGCAGACGCTCCCCTGGGCCCATTAGACGGCGGTCACCACCACCACCCCCAAGGCGGCCAAGAAGCCCTCCTGGAAGAAGGCTACCACCTCCACGTCGTCATAGCCGTTGTCCCCCGCCTGGTGGTCCCCCTCATTCACGTTCCAGATCAATTTCTCCTCGAACCAGGCGAGGACCTCCATTGAGGCGTGGAAGGTCTGATTCATCGTATTGTCGATCACCCAGTCCTCCAAGAAAGGGACCAAGAAGGGTATCAAGGAGCCGCACCCCCCCAAGGCATCGTAGAGGAAGAAGCATCTCTAGCGACAGCCGGAGCAGCAGCTCCCCTTCCCCGAGGCGCAGGTAGAACTCCTGACATGGCGTTCCTGGCAGGTAAAACTTCTTTTGTTTCTTGACTATCACTATCGTTTGCCTGTGCTTGTGTCTTTTTGAGAGCTCAAGCGGTTGGTTTGAGGGGATACAGAGAACTCTGCTTAAAAGCTTTCCAGCTAATCTAGATTCCCAGGGGAGTCTAGTCTGTGATCGGTAGTTGTCTACTCAGACTCTTGTTGGCATTGGTTAGGTAGCTCTTCAGTAgg                                                                                                       ]
[-] EMBL CB646712             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ACCACGCAGACGCTCCCCTGGGCCCATTAGACGGCGGTCACCACCACCACCCCCAAGGCGGCCAAGAAGCCCTCCTGGAAGAAGGCTACCACCTCCACGTCGTCATAGCCGTTCTCCCCCGCCTCGTCGTCCCCCTCATTCACGTTCCAGATCAATTTCTCCTCGAAC   GCGAGGACCTCCATTGAGGCGTGGAAGGTCTGATTCATCGTATTCTCGATCACCCAGTCCTCCAAGAAAGGGACCAAGAAGGGTATCAAGGAGCCGCACCCCCCCAAGGCATCGTAGAGGAAGAAGCATCTCTAGCGACAGCCGGAGCAGCAGCTCACCTTCCCCGAGGCGCAGGTAGAACTCCTGACATTGCGTTCCTGGCAGGTAAAACTTCTTTTGTTTCTTGACTATCACTATCGTTTGCCTGTGCTTGTGTCTTTCTGAGAGCTCAAGCGGTTGGTTTGAGGGGATACAGAGAACTCTGCTTAAAAGCTTTCCAGTTAATCTAGATTACCAGTGGAGTCTAGTCTGTGATCTGTAGTTGTCTACTCAGACTCTTGTTGGCATTGGTTATGTAGCTCTTCAGTATTATCTGTTCTAACTTCGTGACTCTTGCATTCCGAACCTGAATATTCTGTGGTGACACTTGTTCTTAATAAAGGTATCGTTCGAAGAAGTTCCGACTTATGTTGA]




>consensus_12621#0
TTCACCTCCTAGGAAAGCATCTCCTGCTCCTGAATCAGTTGTTCTCCACATTGATCATTT
GTCCAGGAATGTTAATGAAGCTCATTTGAAAGAGATATTCGGAAACTTTGGTGAAGTGGT
TAACGTGGAGCTATCCATGGATCGAATGGTCAACCTTCCTCGTGGGTATGGATATATTGA
GTTCAAGAAGAGAACTGATGCTGAGAAAGCTCTTCTTTACATGGACGGCGGTCAAATTGA
TGGGAATGTTGTGAAGTTGAGATTCACACTTGCACCACGGCAAAGGGCTTCTTCACCAAT
GAAGGCGCCTCCCCCTCCCCCAAAAAGAGATGTTCCTCATAATGAGAAAGGCGCTCCTAG
TGCTGAAAAGGATGTGCAGCAGCGCAGGGAACCATCCCCACGAAGGAAGCCAGCTTCACC
TCCACGCAAAAGAACTCCTCCAAACCGAAGGATTGAATCTCCCAGGCGGCAACCTGATCC
ATCTCCTAGGCGTCGTCCTGATTCTCCACCTATTCGTCGTCGAGCAGATGCTTCGCCTGT
CAGGCGTGGTGACACACCTCCTCGTCGGAGACCAGGATCTCCAGTGAGAAGGCGTTCTCC
CTCTCCACCACCTAGAAGGCGTAGATCACCAATGCGTCCTTCACCTAGGAGGCTTCGTGG
AAGCCCATCACCACGCAGACGCTCCCCTGGGCCCATTAGACGGCGGTCACCACCACCACC
CCCAAGGCGGCCAAGAAGCCCTCCTGGAAGAAGGCTACCACCTCCACGTCGTCATAGCCG
TTCTCCCCCGCCTCGTCGTCCCCCTCATTCACGTTCCAGATCAATTTCTCCTCGAACCAG
GCGAGGACCTCCATTGAGGCGTGGAAGGTCTGATTCATCGTATTCTCGATCACCCAGTCC
TCCAAGAAAGGGACCAAGAAGGGTATCAAGGAGCCGCACCCCCCCAAGGCATCGTAGAGG
AAGAAGCATCTCTAGCGACAGCCGGAGCAGCAGCTCACCTTCCCCGAGGCGCAGGTAGAA
CTCCTGACATTGCGTTCCTGGCAGGTAAAACTTCTTTTGTTTCTTGACTATCACTATCGT
TTGCCTGTGCTTGTGTCTTTCTGAGAGCTCAAGCGGTTGGTTTGAGGGGATACAGAGAAC
TCTGCTTAAAAGCTTTCCAGTTAATCTAGATTACCAGTGGAGTCTAGTCTGTGATCTGTA
GTTGTCTACTCAGACTCTTGTTGGCATTGGTTATGTAGCTCTTCAGTATTATCTGTTCTA
ACTTCGTGACTCTTGCATTCCGAACCTGAATATTCTGTGGTGACACTTGTTCTTAATACT
GTTATCGTTCGAAGAAGTTCCGACTTATGTTGA

consensusID : consensus_12621#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 713
fasta sequence 
                              [CTACCACCTGCACGGTGCCCATAGCCGATCTCCCCCTGTCTCGACGTCCCCCTTATTCACGTTCCAGATCAATTTCTCCTAACAACGCGAAGACCTACATCGATGCGTGGAACGTCTGATTCATCTTATTCTACATCACCCATTCCTCCAATAAAGGGACCAAGAAAGATGTCAAGGACCCGCACCCTCCCAAGGAATCGCACAGGAAGAATCATCTATAGCAACAGCCGTATCAGCAGCTCACCTTCCCCGAGGCGCAGGTAGAACTCCTGACATTGCCCTCCTGACTGGTCAAACTTCTATTGTTCCTTGACTATCACTATCTGCCCGCCTGTGCTTGCGACTTTCTGAGAGCTCAAGCGGCTGGTTCTAGGGGATACAGAGAACTCTGCTTAACAGCTTACCAGTTTATCTAGACTACCACCGGAGACTAGTCTGTGATCTGATAGTTGACTACTCAGACCTCTTGTGGCATTGGACATGTAGCTCTCCAGTATCATCCGATCTAACTTCCTGACTTTTGCATCCCTAACCTGAATATTCATGAGCGACACTTGTTCTTAATACTGATATCGTTCAAACAAGTTGCAACTTGCCCATTTCCGTCTATTGGTCCTTCATGGGGGGGCCCAATCCCAATTCAACCCTATATTGAGTCAAATACGAACGCTTACTTGTCGGTTTCAATAACCGTCGAAATGGTAACACAATCC]

[+] EMBL CA757710             [CTACCACCTGCACGGTGCCCATAGCCGATCTCCCCCTGTCTCGACGTCCCCCTTATTCACGTTCCAGATCAATTTCTCCTAACAACGCGAAGACCTACATCGATGCGTGGAACGTCTGATTCATCTTATTCTACATCACCCATTCCTCCAATAAAGGGACCAAGAAAGATGTCAAGGACCCGCACCCTCCCAAGGAATCGCACAGGAAGAATCATCTATAGCAACAGCCGTATCAGCAGCTCACCTTCCCCGAGGCGCAGGTAGAACTCCTGACATTGCCCTCCTGACTGGTCAAACTTCTATTGTTCCTTGACTATCACTATCTGCCCGCCTGTGCTTGCGACTTTCTGAGAGCTCAAGCGGCTGGTTCTAGGGGATACAGAGAACTCTGCTTAACAGCTTACCAGTTTATCTAGACTACCACCGGAGACTAGTCTGTGATCTGATAGTTGACTACTCAGACCTCTTGTGGCATTGGACATGTAGCTCTCCAGTATCATCCGATCTAACTTCCTGACTTTTGCATCCCTAACCTGAATATTCATGAGCGACACTTGTTCTTAATACTGATATCGTTCAAACAAGTTGCAACTTGCCCATTTCCGTCTATTGGTCCTTCATGGGGGGGCCCAATCCCAATTCAACCCTATATTGAGTCAAATACGAACGCTTACTTGTCGGTTTCAATAACCGTCGAAATGGTAACACAATCC]




>consensus_12621#1
CTACCACCTGCACGGTGCCCATAGCCGATCTCCCCCTGTCTCGACGTCCCCCTTATTCAC
GTTCCAGATCAATTTCTCCTAACAACGCGAAGACCTACATCGATGCGTGGAACGTCTGAT
TCATCTTATTCTACATCACCCATTCCTCCAATAAAGGGACCAAGAAAGATGTCAAGGACC
CGCACCCTCCCAAGGAATCGCACAGGAAGAATCATCTATAGCAACAGCCGTATCAGCAGC
TCACCTTCCCCGAGGCGCAGGTAGAACTCCTGACATTGCCCTCCTGACTGGTCAAACTTC
TATTGTTCCTTGACTATCACTATCTGCCCGCCTGTGCTTGCGACTTTCTGAGAGCTCAAG
CGGCTGGTTCTAGGGGATACAGAGAACTCTGCTTAACAGCTTACCAGTTTATCTAGACTA
CCACCGGAGACTAGTCTGTGATCTGATAGTTGACTACTCAGACCTCTTGTGGCATTGGAC
ATGTAGCTCTCCAGTATCATCCGATCTAACTTCCTGACTTTTGCATCCCTAACCTGAATA
TTCATGAGCGACACTTGTTCTTAATACTGATATCGTTCAAACAAGTTGCAACTTGCCCAT
TTCCGTCTATTGGTCCTTCATGGGGGGGCCCAATCCCAATTCAACCCTATATTGAGTCAA
ATACGAACGCTTACTTGTCGGTTTCAATAACCGTCGAAATGGTAACACAATCC

consensusID : consensus_12621#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence 
                              [NGCCAGANCTTCTGGAGAGGAACACCTCAAGTTNTTAAACCNTTTCCCCCGCTNTTGTCCCCTCANNAAGTCCAGATCATTTTTCNTGGAGGNGGGACTCCATGGGGNGTGGAGGTCNGATTCTTCGTATTTTGATCACCCATCCTCCAAGAAAGGGACCAAGAAGGGTATCAAGGANCCGCACCCCCCCAAGGCATCGTAGAGGAAGAAGCATCTCTAGCGACAGCCGGAGCAGCAGCTCACNTTCCCCGAGGCGCAGGTAGAACTCCTGACATTGCGTTCCTGGCAGGTAAAACTTCTTTTGTTTCTTGACTATCACTATCGTTTGCCTGTGCTTGTGTCTTTCTGAGAGCTCAAGCGGTTGGTTTGAGGGGATACAGAGAACTCTGCTTAAAAGCTTTCCAGTTAATCTAGATTACCAGTGGAGTCTAGTCTGTGATCTGTAGTTGTCTACTCAGACTCTTGTTGGCATTGGTTATGTAGCTCTTCAGTATTATCTGTTCTAACTTCGTGACTCTGCATTCCGAACCTGAATAAAAAAAAAAAAAAA]

[-] EMBL AA752196             [NGCCAGANCTTCTGGAGAGGAACACCTCAAGTTNTTAAACCNTTTCCCCCGCTNTTGTCCCCTCANNAAGTCCAGATCATTTTTCNTGGAGGNGGGACTCCATGGGGNGTGGAGGTCNGATTCTTCGTATTTTGATCACCCATCCTCCAAGAAAGGGACCAAGAAGGGTATCAAGGANCCGCACCCCCCCAAGGCATCGTAGAGGAAGAAGCATCTCTAGCGACAGCCGGAGCAGCAGCTCACNTTCCCCGAGGCGCAGGTAGAACTCCTGACATTGCGTTCCTGGCAGGTAAAACTTCTTTTGTTTCTTGACTATCACTATCGTTTGCCTGTGCTTGTGTCTTTCTGAGAGCTCAAGCGGTTGGTTTGAGGGGATACAGAGAACTCTGCTTAAAAGCTTTCCAGTTAATCTAGATTACCAGTGGAGTCTAGTCTGTGATCTGTAGTTGTCTACTCAGACTCTTGTTGGCATTGGTTATGTAGCTCTTCAGTATTATCTGTTCTAACTTCGTGACTCTGCATTCCGAACCTGAATAAAAAAAAAAAAAAA]




>consensus_12621#2
NGCCAGANCTTCTGGAGAGGAACACCTCAAGTTNTTAAACCNTTTCCCCCGCTNTTGTCC
CCTCANNAAGTCCAGATCATTTTTCNTGGAGGNGGGACTCCATGGGGNGTGGAGGTCNGA
TTCTTCGTATTTTGATCACCCATCCTCCAAGAAAGGGACCAAGAAGGGTATCAAGGANCC
GCACCCCCCCAAGGCATCGTAGAGGAAGAAGCATCTCTAGCGACAGCCGGAGCAGCAGCT
CACNTTCCCCGAGGCGCAGGTAGAACTCCTGACATTGCGTTCCTGGCAGGTAAAACTTCT
TTTGTTTCTTGACTATCACTATCGTTTGCCTGTGCTTGTGTCTTTCTGAGAGCTCAAGCG
GTTGGTTTGAGGGGATACAGAGAACTCTGCTTAAAAGCTTTCCAGTTAATCTAGATTACC
AGTGGAGTCTAGTCTGTGATCTGTAGTTGTCTACTCAGACTCTTGTTGGCATTGGTTATG
TAGCTCTTCAGTATTATCTGTTCTAACTTCGTGACTCTGCATTCCGAACCTGAATAAAAA
AAAAAAAAAA

consensusID : consensus_12621#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 207
fasta sequence 
                              [AGATTCACACTTGCACCACGGCAAAGGGCTTCTACACCAATGAAGGCGCCTCCCCCTCCTCNAAAAAGAGATGTTCCTCATAATGNGAAAGNCGCTCCTAGTGCTGAAAAGGCTGTGCAGCAGCGCAGGGAACCATACCCACGTTGGNAGCCAGNTTCACCTCCACGCAAAAGNNCTNCTTCAAACCGCAGATTGATTCTTCCGAGG]

[+] EMBL D43317               [AGATTCACACTTGCACCACGGCAAAGGGCTTCTACACCAATGAAGGCGCCTCCCCCTCCTCNAAAAAGAGATGTTCCTCATAATGNGAAAGNCGCTCCTAGTGCTGAAAAGGCTGTGCAGCAGCGCAGGGAACCATACCCACGTTGGNAGCCAGNTTCACCTCCACGCAAAAGNNCTNCTTCAAACCGCAGATTGATTCTTCCGAGG]




>consensus_12621#3
AGATTCACACTTGCACCACGGCAAAGGGCTTCTACACCAATGAAGGCGCCTCCCCCTCCT
CNAAAAAGAGATGTTCCTCATAATGNGAAAGNCGCTCCTAGTGCTGAAAAGGCTGTGCAG
CAGCGCAGGGAACCATACCCACGTTGGNAGCCAGNTTCACCTCCACGCAAAAGNNCTNCT
TCAAACCGCAGATTGATTCTTCCGAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12621#0      -TTCACCTCCTAGGAAAGCATCTCCTGCTCCTGAATCAGTTGTTCTCCACATTGATCATT 59
consensus_12621#3      ------------------------------------------------------------
consensus_12621#1      ----CTACCACCTGCACGG---TGCCCATAGCCGATCT-CCCCCTGTCTCGACGTCCCCC 52
consensus_12621#2      NGCCAGANCTTCTGGAGAGGAACACCTCAAGTTNTTAAACCNTTTCCCCCGCTNTTGTCC 60
                                                                                   

consensus_12621#0      TGTCCAGGAATGTTAATGAAGCTCATTTGAAAGAGATATTCGGAAACTTTGGTGAAGTGG 119
consensus_12621#3      ------------------------------------------------------------
consensus_12621#1      TTATTCACGTTCCAGATCAATTTCTCCTAACAACGCGAAGACCTACATCGATGCGTGGAA 112
consensus_12621#2      CCTCANNAAGTCCAGATCA-TTTTTCNTGGAGGNGGGA----CTCCAT-GGGGNGTGGAG 114
                                                                                   

consensus_12621#0      TTAACGTGGAGCTATCCATGGATCGAATGGTCAACCTTCCTCGTGGGTATGGATATATTG 179
consensus_12621#3      ------------------------------------------------------------
consensus_12621#1      CGTCTGATTCATCTTATTCTACATCACCCATTCCTCCAATAAAGGGACCAAGAAAGATGT 172
consensus_12621#2      -GTCNGATTCTTCGTATTTTG-ATCACCCAT-CCTCCAAGAAAGGGACCAAGAAGGGTAT 171
                                                                                   

consensus_12621#0      AGTTCAAGAAGAGAACTGATGCTGAGAAAGCTCTTCTTTACATGGACGGCGGTCAAATTG 239
consensus_12621#3      ------------------------------------------------------------
consensus_12621#1      CAAGGACCCGCACCCTCCCAAGGAATCGCACAGGAAGAATCATCTATAGCAACAGCCGTA 232
consensus_12621#2      CAAGGANCCGCACCCCCCCAAGGCATCGTAGAGGAAGAAGCATCTCTAGCGACAGCCGGA 231
                                                                                   

consensus_12621#0      ATGGGAATGTTGTGAAGTTGAGATTCACACTTGCACCACGGCAAAGGGCTTCTTCACCAA 299
consensus_12621#3      --------------------AGATTCACACTTGCACCACGGCAAAGGGCTTCTACACCAA 40
consensus_12621#1      TCAGCAGCTCACCTTCCCCGAGGCGCAGGTAGAACTCCTGACATTGCCCTCCTG-ACTGG 291
consensus_12621#2      GCAGCAGCTCACNTTCCCCGAGGCGCAGGTAGAACTCCTGACATTGCGTTCCTG-GCAGG 290
                                           **   **         *  * **  *   * **   *   

consensus_12621#0      TGAAGGCGCCTCCCCCTCCCCCAAAAAGAGATGTTCCTCATAATGAGAAAGGCGCTCCTA 359
consensus_12621#3      TGAAGGCGCCTCCCCCTCCTCNAAAAAGAGATGTTCCTCATAATGNGAAAGNCGCTCCTA 100
consensus_12621#1      TCAAACTTCTATTGTTCCTTGACTATCACTATCTGCCCGCCTGTGCTTGCGACTTTCTGA 351
consensus_12621#2      TAAAACTTCTTTTGTTTCTTGACTATCACTATC-GTTTGCCTGTGCTTGTGTCTTTCTGA 349
                       * **    *        *      *     **           **     * *  **  *

consensus_12621#0      GTGCTGAAAAGGATG---TGCAGCAGCGCAGGGAACCATCCCCACG---AAGGAAGCCAG 413
consensus_12621#3      GTGCTGAAAAGGCTG---TGCAGCAGCGCAGGGAACCATACCCACG---TTGGNAGCCAG 154
consensus_12621#1      GAGCTCAAGCGGCTGGTTCTAGGGGATACAGAGAACTCTGCTTAACAGCTTACCAGTTTA 411
consensus_12621#2      GAGCTCAAGCGGTTGGTTTGAGGGGATACAGAGAACTCTGCTTAAAAGCTTTCCAGTTAA 409
                       * *** **  ** **       *     *** ****  * *  *          **    

consensus_12621#0      CTTCACCTCCACGCAAAAGAACTCCTCCAAACCGAAGGATTGAATCTCCCAGGCGGCAAC 473
consensus_12621#3      NTTCACCTCCACGCAAAAGNNCTNCTTCAAACCGCAG-ATTGATTCTTCCGAGG------ 207
consensus_12621#1      TCTAGACTACCACCGGAGACTAGTCTGTGATCTGATA-GTTGACTACTCAGACCTCTTGT 470
consensus_12621#2      TCTAGATTACCAGTGGAGTCTAGTCTGTGATCTG-TA-GTTGTCTACTCAGACTCTTGTT 467
                         *    * *      *       **   * * *     ***  *   *           

consensus_12621#0      CTGATCCATCTCCTAGGCGTCGTCCTGATTCTCCACCTATTCGTCGTCGAGCAGATGCTT 533
consensus_12621#3      ------------------------------------------------------------
consensus_12621#1      GGCATTGGACATGTAGCTCTCCAGTATCATCCGATCTAACTTCCTGACTTTTGCATCCCT 530
consensus_12621#2      GGCATTGGTTATGTAGCTCTTCAGTATTATCTGTTCTAACTTCGTGACTCT-GCATTCCG 526
                                                                                   

consensus_12621#0      CGCCTGTCAGGCGTGGTGACACACCTCCTCGTCGGAGACCAGGATCTCCAGTGAGAAGGC 593
consensus_12621#3      ------------------------------------------------------------
consensus_12621#1      AACCTGAATATTCATGAGCGACACTTGTTCTTAATACTGATATCGTTCAAACAAGTTGCA 590
consensus_12621#2      AACCTGAATAAAAAAAAAAAAAAA------------------------------------ 550
                                                                                   

consensus_12621#0      GTTCTCCCTCTCCACCACCTAGAAGGCGTAGATCACCAATGCGTCCTTCACCTAGGAGGC 653
consensus_12621#3      ------------------------------------------------------------
consensus_12621#1      ACTTGCCCATTTCCGTCTATTGGTCCTTCATGGGGGGGCCCAATCCCAATTCAACCCTAT 650
consensus_12621#2      ------------------------------------------------------------
                                                                                   

consensus_12621#0      TTCGTGGAAGCCCATCACCACGCAGACGCTCCCCTGGGCCCATTAGACGGCGGTCACCAC 713
consensus_12621#3      ------------------------------------------------------------
consensus_12621#1      ATTGAGTCAAATACGAACGCTTACTTGTCGGTTTCAATAACCGTCGAAATGGTAACACAA 710
consensus_12621#2      ------------------------------------------------------------
                                                                                   

consensus_12621#0      CACCACCCCCAAGGCGGCCAAGAAGCCCTCCTGGAAGAAGGCTACCACCTCCACGTCGTC 773
consensus_12621#3      ------------------------------------------------------------
consensus_12621#1      TCC--------------------------------------------------------- 713
consensus_12621#2      ------------------------------------------------------------
                                                                                   

consensus_12621#0      ATAGCCGTTCTCCCCCGCCTCGTCGTCCCCCTCATTCACGTTCCAGATCAATTTCTCCTC 833
consensus_12621#3      ------------------------------------------------------------
consensus_12621#1      ------------------------------------------------------------
consensus_12621#2      ------------------------------------------------------------
                                                                                   

consensus_12621#0      GAACCAGGCGAGGACCTCCATTGAGGCGTGGAAGGTCTGATTCATCGTATTCTCGATCAC 893
consensus_12621#3      ------------------------------------------------------------
consensus_12621#1      ------------------------------------------------------------
consensus_12621#2      ------------------------------------------------------------
                                                                                   

consensus_12621#0      CCAGTCCTCCAAGAAAGGGACCAAGAAGGGTATCAAGGAGCCGCACCCCCCCAAGGCATC 953
consensus_12621#3      ------------------------------------------------------------
consensus_12621#1      ------------------------------------------------------------
consensus_12621#2      ------------------------------------------------------------
                                                                                   

consensus_12621#0      GTAGAGGAAGAAGCATCTCTAGCGACAGCCGGAGCAGCAGCTCACCTTCCCCGAGGCGCA 1013
consensus_12621#3      ------------------------------------------------------------
consensus_12621#1      ------------------------------------------------------------
consensus_12621#2      ------------------------------------------------------------
                                                                                   

consensus_12621#0      GGTAGAACTCCTGACATTGCGTTCCTGGCAGGTAAAACTTCTTTTGTTTCTTGACTATCA 1073
consensus_12621#3      ------------------------------------------------------------
consensus_12621#1      ------------------------------------------------------------
consensus_12621#2      ------------------------------------------------------------
                                                                                   

consensus_12621#0      CTATCGTTTGCCTGTGCTTGTGTCTTTCTGAGAGCTCAAGCGGTTGGTTTGAGGGGATAC 1133
consensus_12621#3      ------------------------------------------------------------
consensus_12621#1      ------------------------------------------------------------
consensus_12621#2      ------------------------------------------------------------
                                                                                   

consensus_12621#0      AGAGAACTCTGCTTAAAAGCTTTCCAGTTAATCTAGATTACCAGTGGAGTCTAGTCTGTG 1193
consensus_12621#3      ------------------------------------------------------------
consensus_12621#1      ------------------------------------------------------------
consensus_12621#2      ------------------------------------------------------------
                                                                                   

consensus_12621#0      ATCTGTAGTTGTCTACTCAGACTCTTGTTGGCATTGGTTATGTAGCTCTTCAGTATTATC 1253
consensus_12621#3      ------------------------------------------------------------
consensus_12621#1      ------------------------------------------------------------
consensus_12621#2      ------------------------------------------------------------
                                                                                   

consensus_12621#0      TGTTCTAACTTCGTGACTCTTGCATTCCGAACCTGAATATTCTGTGGTGACACTTGTTCT 1313
consensus_12621#3      ------------------------------------------------------------
consensus_12621#1      ------------------------------------------------------------
consensus_12621#2      ------------------------------------------------------------
                                                                                   

consensus_12621#0      TAATACTGTTATCGTTCGAAGAAGTTCCGACTTATGTTGA 1353
consensus_12621#3      ----------------------------------------
consensus_12621#1      ----------------------------------------
consensus_12621#2      ----------------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)