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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12628#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 2847 fasta sequence
[CGCAGCCGCCTCCCTTTGTTCGCGCCCACTTCCAGCCAGGCCACCGCCGCCGCCGCCGACCGAAGCAGCCGACGGCGACCACCGCCGCGGCGAGGGATCGGTGCGTAAGCTTGGCGGCGGGCCGCTCCGCACGCGGGAGGGATCGCCGTAGCCGCCCTTCCCCCCACCCTCTACACCCCCTCGCCGGCGGCGAACACGGCGCGCGATGGGAGGCGCGCGCGCGCAGGTGAACAAGCCGCACAAGACACGCTTCGCCTCCAAGGCGTCGCGCCACGCGCACAAGATCGATAAGGTCAGGACCGGGAAGCCGGAGGGCAGCCACCGCGCCGCCGTCAAGGGGGCCCGCGCCGCGCGCGTCCAGCGGAGCAAGGCGATCCGTGATCAGAAACGTGCTGCTTTGCTGAAGGAGAAGCGCTCTTCCGTTGGATCTTCGAGTGCGCCCCGTGTCGTTGTTCTTTTTGGCCTTTCCTCGTCGGCAAATGTCAGATCACTTGCCAAAGACCTTTTAACCATTGCTTCTGGTGATGAAGAGAAACCAACTTCTTCCACTGTTGCTTCTCCTACATATAAACTTCGAACCACGGTACTTGAAGCACCTTATGGTGATCTTACATCATGCATGGAACTGGCAAAGGTTGCTGATTTGCTAGCATTTGTACTATCAGCAAATTCATTATACGATTGTGATTCGAGCAGTCCAATTGATGATTTTGGATCACAATGCTTGTCTGTTTTTCGGGCCATGGGCTTACCTAGTACAGCTGTTTTCATTCGAGATCTTCCATCAGAAAACAAAAGTAGGCAGGAATTGAAGAAAACAGCTATTTCTTTTGTTTCTCCAGAGCTACCTGAGGATTGCAAGTTCTATGCAGCTGACACAAAGGATGATTTGCACAAGTTCATGTGGCTTTTCAAGGAGCAGCACCTTTCATGTCCACATTGGAGAAACCAGAGGCCTTATGTTATGTCTGAGGAGGCCTGCATAAAACCTGATGACAGTTCAGGGCTGTGCACATTGCTTATGTCTGGATATTTACGTGCCCACAATCTTTCTGTCAACCAGCTTGTCCATCTGTCAGGTGTTGGTGATTTTCAGTTGGGTCAAATTGATATCCTCAAGGATCCTTTTCCTATTAATGAGAGGAAAAACTCCAATGCCATGGTTTCTGAAGATAGTGGTATTCAGATTGTTGACACCTTTGTTCCAGACCCTTCAAGTCAAGAGCCTTTGCTTGTTGAAAACACCCCAGATCCACTTGAAGGGGAGCAGACTTGGCCGACAGAAGCTGAGATGGAAGAAGCCTATTTGAACAACAAACAGAGAAAGCTAAAAAGAAAGCTTCCTCGAGGCACTTCAGAATACCAGGCTGCTTGGATTGTGGATGATACAGATGATGAAGATGGTGATTCTGAGAACGACAACCAGGATGGTGCTGGAATGGTTATAGATGAGCAAGATCACTCAGACAATGGAGGTGATGGTTCAGATATGGATGTGGTATCTCACTTTACGGAGAAATTTGATGAAGAAACAATTGGGGGTACCGAGATGGCAGACGATGAAAATTTGACCAAAGAGCAGATAGAGGCAGAGATTAAGAAAATAAAAGAAGCTAACGCTGAAGACGAAGAATTTCCCGATGAGGTGGAGACACCCTTAGATGTCCCAGCAAAAAGGCGATTTGCAAAATACAGAGGGCTAAAGTCATTTAGGACATCATCCTGGGATCCAAAGGAATCACTGCCACAGGATTATGCAAGAATATTTGCATTCGATAACTTTACAAGAACACAAAAGCATGTTCTTGCTAAAATGGCAGAGCGAGATGAAGGAACCTTGAAGGATTGTGCTCAAAGAGGATCATTTGTGAGGCTCCATCTGAAAAATGTTCCTACTGAGATTGCCTCAAAACTTGTTCATCCATCAAGGAGATTGCCTGTGGTTGTTTCTGGTCTTCTTCAACATGAGTCAAAAATATCGGTTCTCCATTTCAGCATAAAGAAACATGACTCCTATGAAGCTCCTATCAAATCAAAGGACTCCTTAATTTTCAATGTTGGGTTCCGGCAGTTTACTGCTAGGCCATTGTTTTCAACTGACAACATCAATTGCAATAAGCATAAGATGGAGAGGTTTCTACATCATGGGCGGTTTTCTGTTGCCTCTGTATATGCTCCAATTTGCTTTCCTCCACTCCCTCTTATTGTTCTAAAGAGCAGAGATGGGGAGCAGCCTGCCATTGCTGCTGTTGGTTCACTGAAAAGTGTGGATCCGGACCGGATTATTCTT-AAGAAAATTGTTTT-GACTGGTTATCCTCAACGGGTCTCAAAACTGAAA-GCA-GTAGTGCGATACATGTTCCACA-ATCCTGAAGATGTCAAGTGGTTTAAGCCTGTAGAGTTGTGGACGAAACATGGTCGACGTGGCCGAATCAAGGAGACTGTTGGCACTCATGGTGCTATGAAATGCATATTCAATAGCAGCGTCCAGCAGCATGATACCGTGTGCATGAGCCTTTACAAACGCGCTTACCCCAAATGGCCAGAACAGCTCTACCAGATATGATCATATGAGGGTCATGGATATGTGCTTGCACGTTGGCATGTACGTCTCAAAGTTTTGACAGATTGAGCTCATCGATGTGCTTCCTGATGCAGCTCATATATGTATACTAGTGCTAGCAGAAAAAGAAACCTCATGTCAACAACGACATGTAGTTAGCTGTATTCGGTATGTTAACATTTGTTTTACGTTAACAGGTATGATTTTTGGTTTTTGCTGATTTTCGGCGTGCTTTCATCCGCATTTGTGATTGATTGACCGGTAATTCAAGCTGCAATGTTACAAAA]
[+] EMBL CF326010 [CGCAGCCGCCTCCCTTTGTTCGCGCCCACTTCCAGCCAGGCCACCGCCGCCGCCGCCGACCGAAGCAGCCGACGGCGACCACCGCCGCGGCGAGGGATCGGTGCGTAAGCTTGGCGGCGGGCCGCTCCGCACGCGGGAGGGATCGCCGTAGCCGCCCTTCCCCCCACCCTCTACACCCCCTCGCCGGCGGCGAACACGGCGCGCGATGGGAGGCGCGCGCGCGCAGGTGAACAAGCCGCACAAGACACGCTTCGCCTCCAAGGCGTCGCGCCACGCGCACAAGATCGATAAGGTCAGGACCGGGAAGCCGGAGGGCAGCCACCGCGCCGCCGTCAAGGGGGCCCGCGCCGCGCGCGTCCAGCGGAGCAAGGCGATCCGTGATCAGAAACGTGCTGCTTTGCTGAAGGAGAAGCGCTCTTCCGTTGGATCTTCGAGTGCGCCCCGTGTCGTTGTTCTTTTTGGCCTTTCCTCGTCGGCAAATGTCAGATCACTTGCCAAAGACCTTTTAACCATTGCTTCTGGTGATGAAGAGAAACCAACTTCTTCCACTGTTGCTTCTCCTACATATAAACTTCGAACCACGGTACTTGAAGCACCTTATGGTGATCTTACATCATGCATGGAACTGGCAAAGGTTGCTGATTTGCTAGCATT ]
[+] EMBL CF325537 [CGCAGCCGCCTCCCTTTGTTCGCGCCCACTTCCAGCCAGGCCACCGCCGCCGCCGCCGACCGAAGCAGCCGACGGCGACCACCGCCGCGGCGAGGGATCGGTGCGTAAGCTTGGCGGCGGGCCGCTCCGCACGCGGGA ]
[+] EMBL CF325102 [CGCAGCCGCCTCCCTTTGTTCGCGCCCACTTCCAGCCAGGCCACCGCCGCC ]
[+] EMBL AK068577 [ CCACTTCCAGCCAGGCCACCGCCGCCGCCGCCGACCGAAGCAGCCGACGGCGACCACCGCCGCGGCGAGGGATCGGTGCGTAAGCTTGGCGGCGGGCCGCTCCGCACGCGGGAGGGAGCGCCGTAGCCGCCCTTCCCCCCACCCTCTACACCCCCTCGCCGGCGGCGAACACGGCGCGCGATGGGAGGCGCGCGCGCGCAGGTGAACAAGCCGCACAAGACACGCTTCGCCTCCAAGGCGTCGCGCCACGCGCACAAGATCGATAAGGTCAGGACCGGGAAGCCGGAGGGCAGCCACCGCGCCGCCGTCAAGGGGGCCCGCGCCGCGCGCGTCCAGCGGAGCAAGGCGATCCGTGATCAGAAACGTGCTGCTTTGCTGAAGGAGAAGCGCTCTTCCGTTGGATCTTCGAGTGCGCCCCGTGTCGTTGTTCTTTTTGGCCTTTCCTCGTCGGCAAATGTCAGATCACTTGCCAAAGACCTTTTAACCATTGCTTCTGGTGATGAAGAGAAACCAACTTCTTCCACTGTTGCTTCTCCTACATATAAACTTCGAACCACGGTACTTGAAGCACCTTATGGTGATCTTACATCATGCATGGAACTGGCAAAGGTTGCTGATTTGCTAGCATTTGTACTATCAGCAAATTCATTATACGATTGTGATTCGAGCAGTCCAATTGATGATTTTGGATCACAATGCTTGTCTGTTTTTCGGGCCATGGGCTTACCTAGTACAGCTGTTTTCATTCGAGATCTTCCATCAGAAAACAAAAGTAGGCAGGAATTGAAGAAAACAGCTATTTCTTTTGTTTCTCCAGAGCTACCTGAGGATTGCAAGTTCTATGCAGCTGACACAAAGGATGATTTGCACAAGTTCATGTGGCTTTTCAAGGAGCAGCACCTTTCATGTCCACATTGGAGAAACCAGAGGCCTTATGTTATGTCTGAGGAGGCCTGCATAAAACCTGATGACAGTTCAGGGCTGTGCACATTGCTTATGTCTGGATATTTACGTGCCCACAATCTTTCTGTCAACCAGCTTGTCCATCTGTCAGGTGTTGGTGATTTTCAGTTGGGTCAAATTGATATCCTCAAGGATCCTTTTCCTATTAATGAGAGGAAAAACTCCAATGCCATGGTTTCTGAAGATAGTGGTATTCAGATTGTTGACACCTTTGTTCCAGACCCTTCAAGTCAAGAGCCTTTGCTTGTTGAAAACACCCCAGATCCACTTGAAGGGGAGCAGACTTGGCCGACAGAAGCTGAGATGGAAGAAGCCTATTTGAACAACAAACAGAGAAAGCTAAAAAGAAAGCTTCCTCGAGGCACTTCAGAATACCAGGCTGCTTGGATTGTGGATGATACAGATGATGAAGATGGTGATTCTGAGAACGACAACCAGGATGGTGCTGGAATGGTTATAGATGAGCAAGATCACTCAGACAATGGAGGTGATGGTTCAGATATGGATGTGGTATCTCACTTTACGGAGAAATTTGATGAAGAAACAATTGGGGGTACCGAGATGGCAGACGATGAAAATTTGACCAAAGAGCAGATAGAGGCAGAGATTAAGAAAATAAAAGAAGCTAACGCTGAAGACGAAGAATTTCCCGATGAGGTGGAGACACCCTTAGATGTCCCAGCAAAAAGGCGATTTGCAAAATACAGAGGGCTAAAGTCATTTAGGACATCATCCTGGGATCCAAAGGAATCACTGCCACAGGATTATGCAAGAATATTTGCATTCGATAACTTTACAAGAACACAAAAGCATGTTCTTGCTAAAATGGCAGAGCGAGATGAAGGAACCTTGAAGGATTGTGCTCAAAGAGGATCATTTGTGAGGCTCCATCTGAAAAATGTTCCTACTGAGATTGCCTCAAAACTTGTTCATCCATCAAGGAGATTGCCTGTGGTTGTTTCTGGTCTTCTTCAACATGAGTCAAAAATATCGGTTCTCCATTTCAGCATAAAGAAACATGACTCCTATGAAGCTCCTATCAAATCAAAGGACTCCTTAATTTTCAATGTTGGGTTCCGGCAGTTTACTGCTAGGCCATTGTTTTCAACTGACAACATCAATTGCAATAAGCATAAGATGGAGAGGTTTCTACATCATGGGCGGTTTTCTGTTGCCTCTGTATATGCTCCAATTTGCTTTCCTCCACTCCCTCTTATTGTTCTAAAGAGCAGAGATGGGGAGCAGCCTGCCATTGCTGCTGTTGGTTCACTGAAAAGTGTGGATCCGGACCGGATTATTCTT AAGAAAATTGTTTT GACTGGTTATCCTCAACGGGTCTCAAAACTGAAA GCA GTAGTGCGATACATGTTCTACA ATCCTGAAGATGTCAAGTGGTTTAAGCCTGTAGAGTTGTGGACGAAACATGGTCGACGTGGCCGAATCAAGGAGACTGTTGGCACTCATGGTGCTATGAAATGCATATTCAATAGCAGCGTCCAGCAGCATGATACCGTGTGCATGAGCCTTTACAAACGCGCTTACCCCAAATGGCCAGAACAGCTCTACCAGATATGATCATATCAGGGTCATGGATATGTGCTTGCACGTTGGCATGTACGTCTCAAAGTTTTGACAGATTGAGCTCATCGATGTGCTTCCTGATGCAGCTCATATATGTATACTAGTGCTAGCAGAAAAAGAAACCTCATGTCAACAACGACATGTAGT ]
[+] EMBL CB630972 [ CAGCCACCGCGCCGCCGTCAAGGGGGCCCACGCCGCGCGCGTCCAGCGGAGCAAGGCGATCCGTGATCAGAAACGTGCTGCTTTGCTGAAGGAGAAGCGCTCTTCTGTTGGATCTTCGAGTGCGCCCCGTGTCGTTGTTCTTTTTGGCCTTTCCTCGTCGGCAAATGTCAGATCACTTGCCAAAGACCTTTTAACCATTGCTTCTGGTGATGAAGAGAAACCAACTTCTTCCACTGTTGCTTCTCCTACATATAAACTTCGAACCACGGTACTTGAAGCACCTTATGGTGATCTTACATCATGCATGGAACTGGCAAAGGTTGCTGATTTGCTAGCATTTGTACTATCAGCAAATTCATTATACGATTGTGATTCGAGCAGTCCAATTGATGATTTTGGATCACAATGCTTGTCTGTTTTTCGGGCCATGGGCTTACCTAGTACAGCTGTTTTCATTCGAGATCTTCCATCAGAAAACAAAAGTAGGCAGGAATTGAAGAAAACAGCTATTTCTTTTGTTTCTCCAGAGCTACCTGAGGATTGCAAGTTCTATGCAGCTGACACAAAGGATGATTTGCACAAGTTCATGTGGCTTTTCAAGGAGCAGCACCTTTCATGTCCACATTGGAGAAACCAGAGGCCTTATGTTATGTCTGAGGAGGCCTGCATAAAACCTGATGACAGTTCAGGGCTGTGCACATTGCTTGTGTCTGGATATTTACGCGCCCACAATCTTTCTGTCAACCAGCTTGTCCATCTGTCAGGTGGTGGTGATTTTCAGTTGGGTCAAAT ]
[-] EMBL CB660049 [ CGGTTCTCCATTTCAGCATAAAGAAACATGACTCCTATGAAGCTCCTATCAAATCAAAGGACTCCTTAATTTTCAATGTTGGGTTCCGGCAGTTTACTGCTAGGCCATTGTTTTCAACTGACAACATCAATTGCAATAAGCATAAGATGGAGAGGTTTCTACATCATGGGCGGTTTTCTGTTGCCTCTGTATATGCTCCAATTTGCTTTCCTCCACTCCCTCTTATTGTTCTAAAGAGCAGAGATGGGGAGCAGCCTGCCATTGCTGCTGTTGGTTCACTGAAAAGTGTGGATCCGGACCGGATTATTCTT AAGAAAATTGTTTT GACTGGTTATCCTCAACGGGTCTCAAAACTGAAA GCA GTAGTGCGATACATGTTCTACA ATCCTGAAGATGTCAAGTGGTTTAAGCCTGTAGAGTTGTGGACGAAACATGGTCGACGTGGCCGAATCAAGGAGACTGTTGGCACTCATGGTGCTATGAAATGCATATTCAATAGCAGCGTCCAGCAGCATGATACCGTGTGCATGAGCCTTTACAAACGCGCTTACCCCAAATGGCCAGAACAGCTCTACCAGATATGATCATATCAGGGTCATGGATATGTGCTTGCACGTTGGCATGTACGTCTCAAAGTTTTGACAGATTGAGCTCATCGATGTGCTTCCTGATGCAGCTCATATATGTATACTAGTGCTAGCAGAAAAAGAAACCTCATGTCAACAACGACATGTAGTTAGCTGTATTCGGTATGTTAACATTTGTTTTACGTTAACAGGTATGATTTTTGGTTTTTGCTGATTTTCG ]
[-] EMBL CB630973 [ GTTGGGTTCCGGCAGTTTACTGCTAGGCCATTGTTTTCAACTGACAACATCAATTGCAATAAGCATAAGATGGAGAGGTTTCTACATCATGGGCGGTTTTCTGTTGCCTCTGTATATGCTCCAATTTGCTTTCCTCCACTCCCTCTTATTGTTCTAAAGAGCAGAGATGGGGAGCAGCCTGCCATTGCTGCTGTTGGTTCACTGAAAAGTGTGGATCCGGACCGGATTATTCTT AAGAAAATTGTTTT GACTGGTTATCCTCAACGGGTCTCAAAACTGAAA GCA GTAGTGCGATACATGTTCCACA ATCCTGAAGATGTCAAGTGGTTTAAGCCTGTAGAGTTGTGGACGAAACATGGTCGACGTGGCCGAATCAAGGAGACTGTTGGCACTCATGGTGCTATGAAATGCATATTCAATAGCAGCGTCCAGCAGCATGATACCGTGTGCATGAGCCTTTACAAACGCGCTTACCCCAAATGGCCAGAACAGCTCTACCAGATATGATCATATGAGGGTCATGGATATGTGCTTGCACGTTGGCATGTACGTCTCAAAGTTTTGACAGATTGAGCTCATCGATGTGCTTCCTGATGCAGCTCATATATGTATACTAGTGCTAGCAGAAAAAGAAACCTCATGTCAACAACGACATGTAGTT ]
[+] EMBL BM419632 [ CTTAAAGAAAATTGTTTTGGACTGGTNAT CTCAACGGNTCTCAAAACTGAAA CCA TTAGTGCGATACATGTTCCACA ATCCTGAAGATGTCAAGTGGTTTAAGCCTGTAGAGTTGTGGACGAAACATGGTCGACGTGGCCGAATCAAGGAGACTGTTGGCACTCATGGTGCTATGAAATGCATATTCAATAGCAGCGTCCAGCAGCATGATACCGTGTGCATGAGCCTTTACAAACGCGCTTACCCCAAATGGCCAGAACAGCTCTACCAGATATGATCATATGAGGGTCATGGATATGTGCTTGCACGTTGGCATGTACGTCTCAAAGTTTTGACAGATTGAGCTCATCGATGTGCTTCCTGATGCAGCTCATATATGTATACTAGTGCTAGCAGAAAAAGAAACCTCATGTCAACAtgtagt ]
[+] EMBL BM418733 [ TCCTCAACGGGTCTCAAAACTGAAACGCATGTAGTGCGATACATGTTCCACATATCCTGAAGATGTCAAGTGGTTTAAGCCTGTAGAGTTGTGGACGAAACATGGTCGACGTGGCCGAATCAAGGAGACTGTTGGCACTCATGGTGCTATGAAATGCATATTCAATAGCAGCGTCCAGCAGCATGATACCGTGTGCATGAGCCTTTACAAACGCGCTTACCCCTAATGGCCAGAACAGCTCTACCAGATATGATCATATGAGGGTCATGGATATGTGCTTGCACGTTGGCATGTACGTCTCAAAGTTTTGACAGATTGAGCTCATCGATGTGCTTCCTGATGCAGCTCATATATGTATACTAGTGCTAGCAGAAAAAGAAACCTCATGTCA ACATGTAGTTAGCTGTATTCTGTANGTTAACATTTGTTTTACGTTAACAGCTATGATTTTTGATTTTTGCTGATTTTCGGCGTGCTTTCATCCGCATTTGTGATTGATTGACCGGTAATTCAAGCTGCAATGTTACAAAA]
consensusID : consensus_12628#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 837 fasta sequence
[GGCCTTATGTTATGTCTGAGGAGGCCTGCATAAAACCTGATGACAGTTCAGGGCTGTGCACATTGCTTATGTCTGGATATTTACGTGCCCACAATCTTTCTGTCAACCAGCTTGTCCATCTGTCAGGTGTTGGTGATTTTCAGTTGGGTCAAATTGATATCCTCAAGGATCCTTTTCCTATTAATGAGAGGAAAAACTCCAATGCCATGGTTTCTGAAGATAGTGGTATTCAGATTGTTGACACCTTTGTTCCAGACCCTTCAAGTCAAGAGCCTTTGCTTGTTGAAAACACCCCAGATCCACTTGAAGGGGAGCAGACTTGGCCGACAGAAGCTGAGATGGAAGAAGCCTATTTGAACAACAAACAGAGAAAGCTAAAAAGAAAGCTTCCTCGAGGCACTTCAGAATACCAGGCTGCTTGGATTGTGGATGATACAGATGATGAAGATGGTGATTCTGAGAACGACAACCAGGATGGTGCTGGAATGGTTATAGATGAGCAAGATCACTCAGACAATGGAGGTGATGGTTCAGATATGGATGTGGTATCTCACTTTACGGAGAAATTTGATGAAGAAACAATTGGGGGTACCGAGATGGCAGACGATGAAAATTTGACCAAAGGAATCACTGCCACAGGATTATGCAAGAATATTTGCATTCGATAACTTTACAAGAACACAAAAGCATGTTCTTGCTAAAATGGCAGAGCGAGATGAAGGAACCTTGAAGGATTGTGCTCAAAGAGGATCATTTGTGAGGCTCCATCTGAAAAATGTTCCTACTGAGATTGCCTCAAAACTTGTTCATCCATCAAGGAGATTGCCTGTGGTTGTT]
[+] EMBL CB660048 [GGCCTTATGTTATGTCTGAGGAGGCCTGCATAAAACCTGATGACAGTTCAGGGCTGTGCACATTGCTTATGTCTGGATATTTACGTGCCCACAATCTTTCTGTCAACCAGCTTGTCCATCTGTCAGGTGTTGGTGATTTTCAGTTGGGTCAAATTGATATCCTCAAGGATCCTTTTCCTATTAATGAGAGGAAAAACTCCAATGCCATGGTTTCTGAAGATAGTGGTATTCAGATTGTTGACACCTTTGTTCCAGACCCTTCAAGTCAAGAGCCTTTGCTTGTTGAAAACACCCCAGATCCACTTGAAGGGGAGCAGACTTGGCCGACAGAAGCTGAGATGGAAGAAGCCTATTTGAACAACAAACAGAGAAAGCTAAAAAGAAAGCTTCCTCGAGGCACTTCAGAATACCAGGCTGCTTGGATTGTGGATGATACAGATGATGAAGATGGTGATTCTGAGAACGACAACCAGGATGGTGCTGGAATGGTTATAGATGAGCAAGATCACTCAGACAATGGAGGTGATGGTTCAGATATGGATGTGGTATCTCACTTTACGGAGAAATTTGATGAAGAAACAATTGGGGGTACCGAGATGGCAGACGATGAAAATTTGACCAAAGGAATCACTGCCACAGGATTATGCAAGAATATTTGCATTCGATAACTTTACAAGAACACAAAAGCATGTTCTTGCTAAAATGGCAGAGCGAGATGAAGGAACCTTGAAGGATTGTGCTCAAAGAGGATCATTTGTGAGGCTCCATCTGAAAAATGTTCCTACTGAGATTGCCTCAAAACTTGTTCATCCATCAAGGAGATTGCCTGTGGTTGTT]
consensusID : consensus_12628#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 202 fasta sequence
[NCCCANNTTGAGCCCCGTACGNTGNGCCNTCCTGANTGCCGCCCATATATGTNTACTGGGGCTAGCGGAAAAAGANCCCCCTTGTCAACAACGNCATGTAGTTAGCTGTANNCTGTATGTTAACATTTGTTTTCCGTTAACAGCTATGATTTTTGATTTTTGCTGATTTTCGGCGTGCTTTCACCCGCATTTGTGATTGTTT]
[+] EMBL D42812 [NCCCANNTTGAGCCCCGTACGNTGNGCCNTCCTGANTGCCGCCCATATATGTNTACTGGGGCTAGCGGAAAAAGANCCCCCTTGTCAACAACGNCATGTAGTTAGCTGTANNCTGTATGTTAACATTTGTTTTCCGTTAACAGCTATGATTTTTGATTTTTGCTGATTTTCGGCGTGCTTTCACCCGCATTTGTGATTGTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12628#0 CGCAGCCGCCTCCCTTTGTTCGCGCCCACTTCCAGCCAGGCCACCGCCGCCGCCGCCGAC 60
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 CGAAGCAGCCGACGGCGACCACCGCCGCGGCGAGGGATCGGTGCGTAAGCTTGGCGGCGG 120
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 GCCGCTCCGCACGCGGGAGGGATCGCCGTAGCCGCCCTTCCCCCCACCCTCTACACCCCC 180
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 TCGCCGGCGGCGAACACGGCGCGCGATGGGAGGCGCGCGCGCGCAGGTGAACAAGCCGCA 240
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 CAAGACACGCTTCGCCTCCAAGGCGTCGCGCCACGCGCACAAGATCGATAAGGTCAGGAC 300
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 CGGGAAGCCGGAGGGCAGCCACCGCGCCGCCGTCAAGGGGGCCCGCGCCGCGCGCGTCCA 360
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 GCGGAGCAAGGCGATCCGTGATCAGAAACGTGCTGCTTTGCTGAAGGAGAAGCGCTCTTC 420
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 CGTTGGATCTTCGAGTGCGCCCCGTGTCGTTGTTCTTTTTGGCCTTTCCTCGTCGGCAAA 480
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 TGTCAGATCACTTGCCAAAGACCTTTTAACCATTGCTTCTGGTGATGAAGAGAAACCAAC 540
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 TTCTTCCACTGTTGCTTCTCCTACATATAAACTTCGAACCACGGTACTTGAAGCACCTTA 600
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 TGGTGATCTTACATCATGCATGGAACTGGCAAAGGTTGCTGATTTGCTAGCATTTGTACT 660
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 ATCAGCAAATTCATTATACGATTGTGATTCGAGCAGTCCAATTGATGATTTTGGATCACA 720
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 ATGCTTGTCTGTTTTTCGGGCCATGGGCTTACCTAGTACAGCTGTTTTCATTCGAGATCT 780
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 TCCATCAGAAAACAAAAGTAGGCAGGAATTGAAGAAAACAGCTATTTCTTTTGTTTCTCC 840
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 AGAGCTACCTGAGGATTGCAAGTTCTATGCAGCTGACACAAAGGATGATTTGCACAAGTT 900
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 CATGTGGCTTTTCAAGGAGCAGCACCTTTCATGTCCACATTGGAGAAACCAGAGGCCTTA 960
consensus_12628#1 -----------------------------------------------------GGCCTTA 7
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 TGTTATGTCTGAGGAGGCCTGCATAAAACCTGATGACAGTTCAGGGCTGTGCACATTGCT 1020
consensus_12628#1 TGTTATGTCTGAGGAGGCCTGCATAAAACCTGATGACAGTTCAGGGCTGTGCACATTGCT 67
consensus_12628#2 ---------------------------NCCCANNTTGAGCCCCGTACGNTGNGCCNTCCT 33
** ** * * * ** * * **
consensus_12628#0 TATGTCTGGATATTTACGTGCCCACAATCTTTCTGTCAACCAGCTTGTCCATCTGTCAGG 1080
consensus_12628#1 TATGTCTGGATATTTACGTGCCCACAATCTTTCTGTCAACCAGCTTGTCCATCTGTCAGG 127
consensus_12628#2 GANTGCCGCCCATATATGTNTACTGGGGCTAGCGGAAAAAGANC----CCCCTTGTCAA- 88
* * * ** ** ** * ** * * ** * * ** *****
consensus_12628#0 TGTTGGTGATTTTCAGTTGGGTCAAATTGATATCCTCAAGGATCCTTTTCCTATTAATGA 1140
consensus_12628#1 TGTTGGTGATTTTCAGTTGGGTCAAATTGATATCCTCAAGGATCCTTTTCCTATTAATGA 187
consensus_12628#2 ---CAACGNCATGTAGTTAGCTGTANNCTGTATGTT--AACATTTGTTTTCCGTTAACA- 142
* * **** * * * *** * * ** *** * ****
consensus_12628#0 GAGGAAAAACTCCAATGCCATGGTTTCTGAAGATAG-TGGTATTCAGATTGTTGACACCT 1199
consensus_12628#1 GAGGAAAAACTCCAATGCCATGGTTTCTGAAGATAG-TGGTATTCAGATTGTTGACACCT 246
consensus_12628#2 ----------------GCTATGATTTTTGATTTTTGCTGATTTTCGGCGTGCTTTCACCC 186
** *** *** *** * * ** * *** * ** * ****
consensus_12628#0 TTGTTCCAGACCCTTCAAGTCAAGAGCCTTTGCTTGTTGAAAACACCCCAGATCCACTTG 1259
consensus_12628#1 TTGTTCCAGACCCTTCAAGTCAAGAGCCTTTGCTTGTTGAAAACACCCCAGATCCACTTG 306
consensus_12628#2 GCATTTGTGATTGTTT-------------------------------------------- 202
** ** **
consensus_12628#0 AAGGGGAGCAGACTTGGCCGACAGAAGCTGAGATGGAAGAAGCCTATTTGAACAACAAAC 1319
consensus_12628#1 AAGGGGAGCAGACTTGGCCGACAGAAGCTGAGATGGAAGAAGCCTATTTGAACAACAAAC 366
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 AGAGAAAGCTAAAAAGAAAGCTTCCTCGAGGCACTTCAGAATACCAGGCTGCTTGGATTG 1379
consensus_12628#1 AGAGAAAGCTAAAAAGAAAGCTTCCTCGAGGCACTTCAGAATACCAGGCTGCTTGGATTG 426
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 TGGATGATACAGATGATGAAGATGGTGATTCTGAGAACGACAACCAGGATGGTGCTGGAA 1439
consensus_12628#1 TGGATGATACAGATGATGAAGATGGTGATTCTGAGAACGACAACCAGGATGGTGCTGGAA 486
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 TGGTTATAGATGAGCAAGATCACTCAGACAATGGAGGTGATGGTTCAGATATGGATGTGG 1499
consensus_12628#1 TGGTTATAGATGAGCAAGATCACTCAGACAATGGAGGTGATGGTTCAGATATGGATGTGG 546
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 TATCTCACTTTACGGAGAAATTTGATGAAGAAACAATTGGGGGTACCGAGATGGCAGACG 1559
consensus_12628#1 TATCTCACTTTACGGAGAAATTTGATGAAGAAACAATTGGGGGTACCGAGATGGCAGACG 606
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 ATGAAAATTTGACCAAAGAGCAGATAGAGGCAGAGATTAAGAAAATAAAAGAAGCTAACG 1619
consensus_12628#1 ATGAAAATTTGACCAAAG------------------------------------------ 624
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 CTGAAGACGAAGAATTTCCCGATGAGGTGGAGACACCCTTAGATGTCCCAGCAAAAAGGC 1679
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 GATTTGCAAAATACAGAGGGCTAAAGTCATTTAGGACATCATCCTGGGATCCAAAGGAAT 1739
consensus_12628#1 --------------------------------------------------------GAAT 628
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 CACTGCCACAGGATTATGCAAGAATATTTGCATTCGATAACTTTACAAGAACACAAAAGC 1799
consensus_12628#1 CACTGCCACAGGATTATGCAAGAATATTTGCATTCGATAACTTTACAAGAACACAAAAGC 688
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 ATGTTCTTGCTAAAATGGCAGAGCGAGATGAAGGAACCTTGAAGGATTGTGCTCAAAGAG 1859
consensus_12628#1 ATGTTCTTGCTAAAATGGCAGAGCGAGATGAAGGAACCTTGAAGGATTGTGCTCAAAGAG 748
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 GATCATTTGTGAGGCTCCATCTGAAAAATGTTCCTACTGAGATTGCCTCAAAACTTGTTC 1919
consensus_12628#1 GATCATTTGTGAGGCTCCATCTGAAAAATGTTCCTACTGAGATTGCCTCAAAACTTGTTC 808
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 ATCCATCAAGGAGATTGCCTGTGGTTGTTTCTGGTCTTCTTCAACATGAGTCAAAAATAT 1979
consensus_12628#1 ATCCATCAAGGAGATTGCCTGTGGTTGTT------------------------------- 837
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 CGGTTCTCCATTTCAGCATAAAGAAACATGACTCCTATGAAGCTCCTATCAAATCAAAGG 2039
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 ACTCCTTAATTTTCAATGTTGGGTTCCGGCAGTTTACTGCTAGGCCATTGTTTTCAACTG 2099
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 ACAACATCAATTGCAATAAGCATAAGATGGAGAGGTTTCTACATCATGGGCGGTTTTCTG 2159
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 TTGCCTCTGTATATGCTCCAATTTGCTTTCCTCCACTCCCTCTTATTGTTCTAAAGAGCA 2219
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 GAGATGGGGAGCAGCCTGCCATTGCTGCTGTTGGTTCACTGAAAAGTGTGGATCCGGACC 2279
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 GGATTATTCTTAAGAAAATTGTTTTGACTGGTTATCCTCAACGGGTCTCAAAACTGAAAG 2339
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 CAGTAGTGCGATACATGTTCCACAATCCTGAAGATGTCAAGTGGTTTAAGCCTGTAGAGT 2399
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 TGTGGACGAAACATGGTCGACGTGGCCGAATCAAGGAGACTGTTGGCACTCATGGTGCTA 2459
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 TGAAATGCATATTCAATAGCAGCGTCCAGCAGCATGATACCGTGTGCATGAGCCTTTACA 2519
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 AACGCGCTTACCCCAAATGGCCAGAACAGCTCTACCAGATATGATCATATGAGGGTCATG 2579
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 GATATGTGCTTGCACGTTGGCATGTACGTCTCAAAGTTTTGACAGATTGAGCTCATCGAT 2639
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 GTGCTTCCTGATGCAGCTCATATATGTATACTAGTGCTAGCAGAAAAAGAAACCTCATGT 2699
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 CAACAACGACATGTAGTTAGCTGTATTCGGTATGTTAACATTTGTTTTACGTTAACAGGT 2759
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 ATGATTTTTGGTTTTTGCTGATTTTCGGCGTGCTTTCATCCGCATTTGTGATTGATTGAC 2819
consensus_12628#1 ------------------------------------------------------------
consensus_12628#2 ------------------------------------------------------------
consensus_12628#0 CGGTAATTCAAGCTGCAATGTTACAAAA 2847
consensus_12628#1 ----------------------------
consensus_12628#2 ----------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||