cluster # 12630

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Oryza sativa
cluster # 12630 cluster # 12630 Sequences # 11 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12630#0 length = 2468 sequences # 10

consensus_12630#1 length = 745 sequences # 1

consensusID : consensus_12630#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 2468
fasta sequence

                              [ATTTCTTTACAGTGTGGCTTCCTGCTCCTACTATTTCAGTCCTTTCTTATGCTGATGATGGTTCTGGTGAGAGTTTGGAGTTCGTCAAAGGCCTTTTAGGATCATTGCCAGATAATGCATTCCAAAAGAATGTATTGGGTCAAAATTGGAATATGAAGCAGAGAGTTGCAGCAGTGTTAGTTGGTGGTTTGAAACTTGCTAGCGTTGGGTTTATTTCTAGTGTGGGGGCTGGAGCTTCCTCGGATCTCCTGTATGCTGCTCGAGGTGTGCTGAAATCTTCAGTGAATGCAGAAGCAGGACGGAAGAGATCTCCTATTTGGAAGTCAGCAGCTGTTTATAGTTGCTTTCTTGGAACGTCAGCAAACTTGCGGTATCAGATCATTGCTGGTTTAGTGGAGCATCGGCTAGGAGAGAGTCTAGCTACTAGCTACAATCAGCCACTTCTTGCTAGTTTGTTGTCCTTTGTGGCAAGGACAGTGAACTCATACTGGGGAACACAGCAGTGGGTTGATCTTGCGAGATATACTGGACTACAAAAAACCAAGGAAGTTCCTCCTGTTGAGGCCACAGCACCACCTGCTGAAACGTCACAGTTAGCCACACCGCCCGCTGAAACATCACAGTTAGCCACACCACCCGCTGAAACATCACAGTTAGAGGATGGTAGAACAGAAGTACAAAATTTGGATGACAACAGCAACCAATCAAGTGGTTGAACCTAGTGATTTGGTTACTTCACAATGCCTTCAAAGTACATAACGATATAGCTAGGTTTGTATCACAATTCCTTAGAGTTAGGGAGTACATCACTTGTTAACCCCCAACACAGTACATGCATGTACTGCTTGTGATTTTAGAGTAAAAATTGGAAGGGGGACACTTGCAGTCTTCTGAGGATTGCAGCAACAACCGTTTTTCTTCTCTGTAATTCAAAACAGGTTGTAATTTAGTAGGATCGCATACTGTAGAAAGTTTGGCAGGTTTGCCTGTTGCAATAAAATCTTTCCGCCTGCTATGGAGCCAGATGTTTCAGTGTTTGCAGATTTTATCGTCCGACATCGCCCTGGTAAAGATGGTAGGCAAGCAAGTCCCTGGATACTAATGTACGTGGCATCTCTTCCTTGAACTCTCTTCCTATATATGGAAGTTTTGCATCCACCTCATCTTTAGTTGCGAAGAAAGCAGTCTAGAAAGGTGAAGATAGCTAAACGGTGTGACAAGCAAGGTAATAGAAAGGCGCGATCATGGCGAGTGCCAAGGCGATGGCGCAGGATGAGCATCACTTTGTTCTGAAGAGTGGTCATGCCATCCCTGCAGTTGGGTTAGGCACTTGGAGGGCCGGCTCAGATACTGCTCACTCCGTTCAGACAGCCATCACTGAGGCTGGATACAGGCATGTAGATACGGCTGCTCAATATGGAATAGAACAGGAGGTCGGCAAAGGGCTTAAAGCTGCGATGGAAGCTGGAATCAACAGGAAAGATTTGTTTGTGACGTCAAAAATATGGTGCACAAACTTGGCTCCTGAGAGAGTTCGACCAGCATTAAAGAACACGCTGAAGGATCTCCAGTTGGATTATATCGACCTTTACCTTATTCATTGGCCCTTCCGTCTAAAAGATGGAGCACACCAGCCTCCTGAGGCTGGGGAAGTCTTGGAGTTTGACATGGAGGCAGTATGGAGGGAAATGGAGAGACTTGTGACAGATGGACTGGTTAAGGACATTGGTGTCTGCAATTTCTCAGTTACCAAGCTCAACAGACTGTTGCAATCAGCTAATATTCCACCTGCAGTATGCCAGATGGAAATGCACCCTGGTTGGAAGAACAATAAGATTTTCGAGGCCTGCAAAAAACATGGAATT-CATGTTACTGCCTACT--CCCCACTGGGTTCTT-CTGAAAAGAACCTTGCGCATGATCCAGTTGTCGAGAAGATAGCCAACAAGCTGAACAAGACTCCAGGTCAAGTGCTCATCAAGTGGGCTCTCCAAAGGGGAACAAGCGTTATTCCAAAATCAACTAAAGATGAAAGGATTAAGGAGAATATGCAGGTGTTTGGATGGGAGATCCCTGAAGAGGACTTCCAGGTCTTGTGCGGCATCAAAGATGAGAAGCGAGTCCTGACAGGAGAGGAGCTCTTCGTGAACAAGACCCATGGGCCATACAAGAGTGCATCTGAGGTCTGGGATAACGAGGACTAAGCTGCCATGTTTCACCCAAAGATATGGCAAATAATGGTTATGATGTTGGTCATGCACGAAGGAGTTATGTGATGTTCTCCAAGCA-CTGTGACGAAACCAGCTAACTCAGCACAAGATGTACTACTATGTGTAAAACTAGTATTGTTCTATGTGTGCTCTTCTTCAAGCTTTGTGTAACCAGCTTCTCAGCACAAGATGTACAGCCAGTGCTGTAAGATAAATAAAAGTATCATGGCTTTGCCGTTGCACTTGCTACTAAAAAGAAAA]

[+] EMBL AK066733             [ATTTCTTTACAGTGTGGCTTCCTGCTCCTACTATTTCAGTCCTTTCTTATGCTGATGATGGTTCTGGTGAGAGTTTGGAGTTCGTCAAAGGCCTTTTAGGATCATTGCCAGATAATGCATTCCAAAAGAATGTATTGGGTCAAAATTGGAATATGAAGCAGAGAGTTGCAGCAGTGTTAGTTGGTGGTTTGAAACTTGCTAGCGTTGGGTTTATTTCTAGTGTGGGGGCTGGAGCTTCCTCGGATCTCCTGTATGCTGCTCGAGGTGTGCTGAAATCTTCAGTGAATGCAGAAGCAGGACGGAAGAGATCTCCTATTTGGAAGTCAGCAGCTGTTTATAGTTGCTTTCTTGGAACGTCAGCAAACTTGCGGTATCAGATCATTGCTGGTTTAGTGGAGCATCGGCTAGGAGAGAGTCTAGCTACTAGCTACAATCAGCCACTTCTTGCTAGTTTGTTGTCCTTTGTGGCAAGGACAGTGAACTCATACTGGGGAACACAGCAGTGGGTTGATCTTGCGAGATATACTGGACTACAAAAAACCAAGGAAGTTCCTCCTGTTGAGGCCACAGCACCACCTGCTGAAACGTCACAGTTAGCCACACCGCCCGCTGAAACATCACAGTTAGCCACACCACCCGCTGAAACATCACAGTTAGAGGATGGTAGAACAGAAGTACAAAATTTGGATGACAACAGCAACCAATCAAGTGGTTGAACCTAGTGATTTGGTTACTTCACAATGCCTTCAAAGTACATAACGATATAGCTAGGTTTGTATCACAATTCCTTAGAGTTAGGGAGTACATCACTTGTTAACCCCCAACACAGTACATGCATGTACTGCTTGTGATTTTAGAGTAAAAATTGGAAGGGGGACACTTGCAGTCTTCTGAGGATTGCAGCAACAACCGTTTTTCTTCTCTGTAATTCAAAACAGGTTGTAATTTAGTAGGATCGCATACTGTAGAAAGTTTGGCAGGTTTGCCTGTTGCAATAAAATCTTTCCGCCTGCTATGGAGCCAGATGTTTCAGTGTTTGCAGATTTTATCGTCCGACATCGCCCTGGTAAAGATGGTAGGCAAGCAAGTCCCTGGATACTAATGTACGTGGCATCTCTTCCTTGAACTCTCTTCCTATATATGGAAGTTTTGCATCCACCTCATCTTTAGTTGCGAAGAAAGCAGTCTAGAAAGGTGAAGATAGCTAAACGGTGTGACAAGCAAGGTAATAGAAAGGCGCGATCATGGCGAGTGCCAAGGCGATGGCGCAGGATGAGCATCACTTTGTTCTGAAGAGTGGTCATGCCATCCCTGCAGTTGGGTTAGGCACTTGGAGGGCCGGCTCAGATACTGCTCACTCCGTTCAGACAGCCATCACTGAGGCTGGATACAGGCATGTAGATACGGCTGCTCAATATGGAATAGAACAGGAGGTCGGCAAAGGGCTTAAAGCTGCGATGGAAGCTGGAATCAACAGGAAAGATTTGTTTGTGACGTCAAAAATATGGTGCACAAACTTGGCTCCTGAGAGAGTTCGACCAGCATTAAAGAACACGCTGAAGGATCTCCAGTTGGATTATATCGACCTTTACCTTATTCATTGGCCCTTCCGTCTAAAAGATGGAGCACACCAGCCTCCTGAGGCTGGGGAAGTCTTGGAGTTTGACATGGAGGCAGTATGGAGGGAAATGGAGAGACTTGTGACAGATGGACTGGTTAAGGACATTGGTGTCTGCAATTTCTCAGTTACCAAGCTCAACAGACTGTTGCAATCAGCTAATATTCCACCTGCAGTATGCCAGATGGAAATGCACCCTGGTTGGAAGAACAATAAGATTTTCGAGGCCTGCAAAAAACATGGAATT CATGTTACTGCCTACT  CCCCACTGGGTTCTT CTGAAAAGAACCTTGCGCATGATCCAGTTGTCGAGAAGATAGCCAACAAGCTGAACAAGACTCCAGGTCAAGTGCTCATCAAGTGGGCTCTCCAAAGGGGAACAAGCGTTATTCCAAAATCAACTAAAGATGAAAGGATTAAGGAGAATATGCAGGTGTTTGGATGGGAGATCCCTGAAGAGGACTTCCAGGTCTTGTGCGGCATCAAAGATGAGAAGCGAGTCCTGACAGGAGAGGAGCTCTTCGTGAACAAGACCCATGGGCCATACAAGAGTGCATCTGAGGTCTGGGATAACGAGGACTAAGCTGCCATGTTTCACCCAAAGATATGGCAAATAATGGTTATGATGTTGGTCATGCACGAAGGAGTTATGTGATGTTCTCCAAGCA CTGTGACGAAACCAGCTAACTCAGCACAAGATGTACTACTATGTGTAAAACTAGTATTGTTCTATGTGTGCTCTTCTTCAAGCTTTGTGTAACCAGCTTCTCAGCACAAGATGTACAGCCAGTGCTGTAAGATAAATAAAAGTATCATGGCTTTGCCGTTGC                    ]
[+] EMBL AK059249             [ATTTCTTTACAGTGTGGCTTCCTGCTCCTACTATTTCAGTCCTTTCTTATGCTGATGATGGTTCTGGTGAGAGTTTGGAGTTCGTCAAAGGCCTTTTAGGATCATTGCCAGATAATGCATTCCAAAAGAATGTATTGGGTCAAAATTGGAATATGAAGCAGAGAGTTGCAGCAGTGTTAGTTGGTGGTTTGAAACTTGCTAGCGTTGGGTTTATTTCTAGTGTGGGGGCTGGAGCTTCCTCGGATCTCCTGTATGCTGCTCGAGGTGTGCTGAAATCTTCAGTGAATGCAGAAGCAGGACGGAAGAGATCTCCTATTTGGAAGTCAGCAGCTGTTTATAGTTGCTTTCTTGGAACGTCAGCAAACTTGCGGTATCAGATCATTGCTGGTTTAGTGGAGCATCGGCTAGGAGAGAGTCTAGCTACTAGCTACAATCAGCCACTTCTTGCTAGTTTGTTGTCCTTTGTGGCAAGGACAGTGAACTCATACTGGGGAACACAGCAATGGGTTGATCTTGCGAGATATACTGGACTACAAAAAACCAAGGAAGTTCCTCCTGTTGAGGCCACAGCACCACCTGCTGAAACGTCACAGTTAGCCACACCGCCCGCTGAAACATCACAGTTAGCCGCACCACCCGCTGAAACATCACAGTTAGAGGATGGTAGAACAGAAGTACAAAATTTGGATGACAACAGCAACCAATCAAGTGGTTGAACCTAGTGATTTGGTTACTTCACAATGCCTTCAAAGTACATAACGATATAGCTAGGTTTGTATCACAATTCCTTAGAGTTAGGGAGTACATCACTTGTTAACCCCCAACACAGTACATGCATGTACTGCTTGTGATTTTAGAGTAAAAATTGGAAGGGGGACACTTGCAGTCTTCTGAGGATTGCAGCAACAACCG TTTTCTTCTCTGTAATTCAAAACAGGTTGTAATTTAGTAGGATCGCATACTGTAGAAAGTTTGGCAGGTTTGCCTGTTGCAATAAAATCTTTCCGCCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AK102864             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGAAAGCAGTCTAGAAAGGTGAAGATAGCTAAACGGTGTGACAAGCAAGGTAATAGAAAGGCGCGATCATGGCGAGTGCCAAGGCGATGGCGCAGGATGAGCATCACTTTGTTCTGAAGAGTGGTCATGCCATCCCTGCAGTTGGGTTAGGCACTTGGAGGGCCGGCTCAGATACTGCTCACTCCGTTCAGACAGCCATCACTGAGGCTGGATACAGGCATGTAGATACGGCTGCTCAATATGGAATAGAACAGGAGGTCGGCAAAGGGCTTAAAGCTGCGATGGAAGCTGGAATCAACAGGAAAGATTTGTTTGTGACGTCAAAAATATGGTGCACAAACTTGGCTCCTGAGAGAGTTCGACCAGCATTAAAGAACACGCTGAAGGATCTCCAGTTGGATTATATCGACCTTTACCTTATTCATTGGCCCTTCCGTCTAAAAGATGGAGCACACCAGCCTCCTGAGGCTGGGGAAGTCTTGGAGTTTGACATGGAGGCAGTATGGAGGGAAATGGAGAGACTTGTGACAGATGGACTGGTTAAGGACATTGGTGTCTGCAATTTCTCAGTTACCAAGCTCAACAGACTGTTGCAATCAGCTAATATTCCACCTGCAGTATGCCAGATGGAAATGCACCCTGGTTGGAAGAACAATAAGATTTTCGAGGCCTGCAAAAAACATGGAATT CATGTTACTGCCTACT  CCCCACTGGGTTCTT CTGAAAAGAACCTTGCGCATGATCCAGTTGTCGAGAAGATAGCCAACAAGCTGAACAAGACTCCAGGTCAAGTGCTCATCAAGTGGGCTCTCCAAAGGGGAACAAGCGTTATTCCAAAATCAACTAAAGATGAAAGGATTAAGGAGAATATGCAGGTGTTTGGATGGGAGATCCCTGAAGAGGACTTCCAGGTCTTGTGCGGCATCAAAGATGAGAAGCGAGTCCTGACAGGAGAGGAGCTCTTCGTGAACAAGACCCATGGGCCATACAAGAGTGCATCTGAGGTCTGGGATAACGAGGACTAAGCTGCCATGTTTCACCCAAAGATATGGCAAATAATGGTTATGATGTTGGTCATGCACGAAGGAGTTATGTGATGTTCTCCAAGCA CTGTGACGAAACCAGCTAACTCAGCACAAGATGTACTACTATGTGTAAAACTAGTATTGTTCTATGTGTGCTCTTCTTCAAGCTTTGTGTAACCAGCTTCTCAGCACAAGATGTACAGCCAGTGCTGTAAGATAAATAAAAGTATCATGGCT                              ]
[+] EMBL C28599               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TAAACGGTGTGACAAGCAAGGTAATAGAAAGGCGCGATCATGGCGAGTGCCAAGGCGATGGCGCAGGATGAGCATCACTTTGTTCTGAAGAGTGGTCATGCCATCCCTGCAGTTGGGTTAGGCACTTGGAGGGCCGGCTCAGATACTGCTCACTCCGTTCAGACAGCCATCACTGAGGCTGGATACAGGCATGTAGATACGGCTGCTCAATATGGAATAGAACAGGAGGTCGGCAAAGGGCTTAAAGCTGCGATGGAAGCTGGAATCAACAGGAAAGATTTGTTTGTGACGTCAAAAATATGGTGCACAAACTTGGCTCCTGAGAGAGTTCGACCAGCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AA752363             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AACGGTGTGACAAGCAAGGTAATAGAAAGGCGCGATCATGGCGAGTGCCAAGGCGATGGCGCAGGATGAGCATCACTTTGTTCTGAAGAGTGGTCATGCCATCCCTGCAGTTGGGTTAGGCACTTGGAGGGCCGGCTCAGATACTGCTCACTCCGTTCAGACAGCCATCACTGAGGCTGGATACAGGCATGTAGATACGGCTGCTCAATATGGAATACAACAGGAGGTCGGCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU101007             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GTGTGACAAGCAAGGTAATAGAAAGGCGCGATCATGGCGAGTNCCAAGGCGATGGCGCAGGATGAGCATCACTTTGTTCTGAAGAGTGGTCATGCCATCCCTGCAGTTGGGTTAGGCACTTGGAGGGCCGGCTCAGATACTGCTCACTCCGTTCAGACAGCCATCACTGAGGCTGGATACAGGCATGTAGATACGGCTGCTCAATATGGAATAGAACAGGAGGTCGGCAAAGGGCTTAAAGCTGCGATGGAAGCTGGAATCAACAGGAAAGATTTGTTTGTGACGTCAAAAATATGGTGCACAAACTTGGCTCCTGAGAGAGTTCGACCAGCATTAAAG ACACGCTG ANGATCTCCAGTTGGATTATATCGACCTTTACCTTATTCATTGGNCCTTCCGTCTAAAAGATGGAGCACACCAGCCTCCTTAGGNTGGGGAAGTTTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB672639             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGTATGGAGGGAAATGGAGAGACTTGTGACAGATGGACTGGTTAAGGACATTGGTGTCTGCAATTTCTCAGTTACCAAGCTCAACAGACTGTTGCAATCAGCTAATATTCCACCTGCAGTATGCCAGATGGAAATGCACCCTGGTTGGAAGAACAATAAGATTTTCGAGGCCTGCAAAAAACATGGAATT CATGTTACTGCCTACT  CCCCACTGGGTTCTT CTGAAAAGAACCTTGCGCATGATCCAGTTGTCGAGAAGATAGCCAACAAGCTGAACAAGACTCCAGGTCAAGTGCTCATCAAGTGGGCTCTCCAAAGGGGAACAAGCGTTATTCCAAAATCAACTAAAGATGAAAGGATTAAGGAGAATATGCAGGTGTTTGGATGGGAGATCCCTGAAGAGGACTTCCAGGTCTTGTGCGGCATCAAAGATGAGAAGCGAGTCCTGACAGGAGAGGAGCTCTTCGTGAACAAGACCCATGGGCCATACAAGAGTGCATCTGAGGTCTGGGATAACGAGGACTAAGCTGCCATGTTTCACCCAAAGATATGGCAAATAATGGTTATGATGTTGGTCATGCACGAAGGAGTTATGTGATGTTCTCCAAGCA CTGTGACGAAACCAGCTAACTCAGCACAAGATGTACTACTATGTGTAAAACTAGTATTGTTCTATGTGTGCTCTTCTTCAAGCTTTGTGTAACCAGCTTCTCAGCACAAGATGTACAGCCAGTGCTGTAAGATAAAAGAAAGTATCATGGCTTTGCCGTTGCCCTTGCTCCTttatgg    ]
[+] EMBL AU101008             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               gCATGGGATTCCATGTTACTGCCTACTTCCCCCACTGGGTTCTTNCTGAAAAGAACCTTGCGCATGATCCAGTTGTCGAGAAGATAGCCAACAAGCTGAACAAGACTCCAGGTCAAGTGCTCATCAAGTGGGCTCTCCAAAGGGGAACAAGCGTTATTCCAAAATCAACTAAAGATGAAAGGATTAAGGAGAATATGCAGGTGTTTGGATGGGAGATCCCTGAAGAGGACTTCCAGGTCTTGTGCGGCATCAAAGATGAGAAGCGAGTCCTGACAGGAGAGGAGCTCTTCGTGAACAAGACCCATGGGCCATACAAGAGTGCATCTGAGGTCTGGGATAACGAGGACTAAGCTGCCATGTTTCACCCAAAGATATGGCAAATAATGGTTATGATGTTGGTCATGCACGAAGGAGTTATGTGATGTTCTCCAAGCA CTGTGACGAAACCAGCTAACTCAGCACAAGATGTACTACTATGTGTAAAACTAGTATTGTTCTATGTGTGCTCTTCTTCAAGCTTTGTGTAACCAGCTTCTCAGCACAAGATGTACAGCCAGTGCTGTAAGATAAATAAAAGTATCATGGCTTTGCCGTTGCACTTGCTACTAAAAA     ]
[+] EMBL BI797468             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGCTCATCAAGTGGCCTCTCCAAAGGGGAACAAGCGTTATTCCAAAATCAACTAAAGATGAAAGGATTAAGGAGAATATGCAGGTGTTTGGATGGGAGATCCCTGAAGAGGACTTCCAGGTCTTGTGCGGCATCAAAGATGAGAAGCGAGTCCTGACAGGAGAGGAGCTCTTCGTGAACAAGACCCATGGGCCATACAAGAGTGCATCTGAGGTCTGGGATAACGAGGACTAAGCTGCCATGTTTCACCCAAAGATATGGCAAATAATGGTTATGATGTTGGTCATGCACGAAGGAGTTATGTGATGTTCTCCAAGCACCTGTGACGAAACCAGCTAACTCAGCACAAGATGTACTACTATGTGTAAAACTAGTGTTGTTCTATGTGTGCTCTTCTTCAAGCTTTGTGTAACCAGCTTCTCAGCAC AGATGTACACCCAGTGCTGTAAGATAAATAAAAGTATCATGCCTTTCCCGTTCCACTTGCTACTAAAAAAAAAA]
[-] EMBL AU089656             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGGACTAAGCTGCCATGTTTCACCCAAAGATATGGCAAATAATGGTTATGATGTTGGTCATGCACGAAGGAGTTATGTGATGTTCTCCAAGCA CTGTGACGAAACCAGCTAACTCAGCACAAGATGTACTACTATGTGTAAAACTAGTGTTGTTCTATGTGTGCTCTTCTTCAAGCTTTGTGTAACCAGCTTCTCAGCACAAGATGTACAGCCAGTGCTGTAAGATAAATAAAAGTATCATGGCTTTGC                          ]




>consensus_12630#0
ATTTCTTTACAGTGTGGCTTCCTGCTCCTACTATTTCAGTCCTTTCTTATGCTGATGATG
GTTCTGGTGAGAGTTTGGAGTTCGTCAAAGGCCTTTTAGGATCATTGCCAGATAATGCAT
TCCAAAAGAATGTATTGGGTCAAAATTGGAATATGAAGCAGAGAGTTGCAGCAGTGTTAG
TTGGTGGTTTGAAACTTGCTAGCGTTGGGTTTATTTCTAGTGTGGGGGCTGGAGCTTCCT
CGGATCTCCTGTATGCTGCTCGAGGTGTGCTGAAATCTTCAGTGAATGCAGAAGCAGGAC
GGAAGAGATCTCCTATTTGGAAGTCAGCAGCTGTTTATAGTTGCTTTCTTGGAACGTCAG
CAAACTTGCGGTATCAGATCATTGCTGGTTTAGTGGAGCATCGGCTAGGAGAGAGTCTAG
CTACTAGCTACAATCAGCCACTTCTTGCTAGTTTGTTGTCCTTTGTGGCAAGGACAGTGA
ACTCATACTGGGGAACACAGCAGTGGGTTGATCTTGCGAGATATACTGGACTACAAAAAA
CCAAGGAAGTTCCTCCTGTTGAGGCCACAGCACCACCTGCTGAAACGTCACAGTTAGCCA
CACCGCCCGCTGAAACATCACAGTTAGCCACACCACCCGCTGAAACATCACAGTTAGAGG
ATGGTAGAACAGAAGTACAAAATTTGGATGACAACAGCAACCAATCAAGTGGTTGAACCT
AGTGATTTGGTTACTTCACAATGCCTTCAAAGTACATAACGATATAGCTAGGTTTGTATC
ACAATTCCTTAGAGTTAGGGAGTACATCACTTGTTAACCCCCAACACAGTACATGCATGT
ACTGCTTGTGATTTTAGAGTAAAAATTGGAAGGGGGACACTTGCAGTCTTCTGAGGATTG
CAGCAACAACCGTTTTTCTTCTCTGTAATTCAAAACAGGTTGTAATTTAGTAGGATCGCA
TACTGTAGAAAGTTTGGCAGGTTTGCCTGTTGCAATAAAATCTTTCCGCCTGCTATGGAG
CCAGATGTTTCAGTGTTTGCAGATTTTATCGTCCGACATCGCCCTGGTAAAGATGGTAGG
CAAGCAAGTCCCTGGATACTAATGTACGTGGCATCTCTTCCTTGAACTCTCTTCCTATAT
ATGGAAGTTTTGCATCCACCTCATCTTTAGTTGCGAAGAAAGCAGTCTAGAAAGGTGAAG
ATAGCTAAACGGTGTGACAAGCAAGGTAATAGAAAGGCGCGATCATGGCGAGTGCCAAGG
CGATGGCGCAGGATGAGCATCACTTTGTTCTGAAGAGTGGTCATGCCATCCCTGCAGTTG
GGTTAGGCACTTGGAGGGCCGGCTCAGATACTGCTCACTCCGTTCAGACAGCCATCACTG
AGGCTGGATACAGGCATGTAGATACGGCTGCTCAATATGGAATAGAACAGGAGGTCGGCA
AAGGGCTTAAAGCTGCGATGGAAGCTGGAATCAACAGGAAAGATTTGTTTGTGACGTCAA
AAATATGGTGCACAAACTTGGCTCCTGAGAGAGTTCGACCAGCATTAAAGAACACGCTGA
AGGATCTCCAGTTGGATTATATCGACCTTTACCTTATTCATTGGCCCTTCCGTCTAAAAG
ATGGAGCACACCAGCCTCCTGAGGCTGGGGAAGTCTTGGAGTTTGACATGGAGGCAGTAT
GGAGGGAAATGGAGAGACTTGTGACAGATGGACTGGTTAAGGACATTGGTGTCTGCAATT
TCTCAGTTACCAAGCTCAACAGACTGTTGCAATCAGCTAATATTCCACCTGCAGTATGCC
AGATGGAAATGCACCCTGGTTGGAAGAACAATAAGATTTTCGAGGCCTGCAAAAAACATG
GAATTCATGTTACTGCCTACTCCCCACTGGGTTCTTCTGAAAAGAACCTTGCGCATGATC
CAGTTGTCGAGAAGATAGCCAACAAGCTGAACAAGACTCCAGGTCAAGTGCTCATCAAGT
GGGCTCTCCAAAGGGGAACAAGCGTTATTCCAAAATCAACTAAAGATGAAAGGATTAAGG
AGAATATGCAGGTGTTTGGATGGGAGATCCCTGAAGAGGACTTCCAGGTCTTGTGCGGCA
TCAAAGATGAGAAGCGAGTCCTGACAGGAGAGGAGCTCTTCGTGAACAAGACCCATGGGC
CATACAAGAGTGCATCTGAGGTCTGGGATAACGAGGACTAAGCTGCCATGTTTCACCCAA
AGATATGGCAAATAATGGTTATGATGTTGGTCATGCACGAAGGAGTTATGTGATGTTCTC
CAAGCACTGTGACGAAACCAGCTAACTCAGCACAAGATGTACTACTATGTGTAAAACTAG
TATTGTTCTATGTGTGCTCTTCTTCAAGCTTTGTGTAACCAGCTTCTCAGCACAAGATGT
ACAGCCAGTGCTGTAAGATAAATAAAAGTATCATGGCTTTGCCGTTGCACTTGCTACTAA
AAAGAAAA

consensusID : consensus_12630#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 745
fasta sequence

                              [AGAAGCAGGACGGAAGAGATCTCTTATTTGAAGTCAGCAGCTGTTTATAGTTGCTTTCTTGGAACGTCAGCAAACTTGCGGTATCAGATCATTGCTGGTTTAGTGGAGCATCGGCTAGGAGAGAGTCTAGCTACTAGCTACAATCAGCCACTTCTTGCTAGTTTGTTGTCCTTTGTGGCAAGGACAGTGAACTCATACTGGGGAACACAGCAATGGGTTGATCTTGCGAGATATACTGGACTACAAAAAACCAAGGAAGTTCCTCCTGTTGAGGCCACAGCACCACCTGCTGAAACGTCACAGTTAGCCACACCGCCCGCTGAAACATCACAGTTAGCCACACCACCCGCTGAAACATCACAGTTAGAGGATGGTAGAACAGAAGTACAAAATTTGGATGACAACAGCAACCAATCAAGTGGTTGAACCTAGTGATTTGGTTACTTCACAATGCCTTCAAAGTACATAACGATATAGCTAGGTTTGTATCACAATTCCTTAGAGTTAGGGAGTACATCACTTGTTAACCCCCAACACAGTACATGCATGTACTGCTTGTGATTTTAGAGTAAAAATTGGAAGGGGGACACTTGCAGTCTTCTGAGGATTGCAGCAACAACCGTTTTCTTCTCTGTAATTCAAAACAGGTTGTAATTTAGTAGGATCGCATACTGTAGAAAGTTTGGCAGGTTTGCCTGTTGCAAAAAGATCTTTCCGCCTGCTATGGAGCCAGAAAAACCTTAAA]

[-] EMBL CB676603             [AGAAGCAGGACGGAAGAGATCTCTTATTTGAAGTCAGCAGCTGTTTATAGTTGCTTTCTTGGAACGTCAGCAAACTTGCGGTATCAGATCATTGCTGGTTTAGTGGAGCATCGGCTAGGAGAGAGTCTAGCTACTAGCTACAATCAGCCACTTCTTGCTAGTTTGTTGTCCTTTGTGGCAAGGACAGTGAACTCATACTGGGGAACACAGCAATGGGTTGATCTTGCGAGATATACTGGACTACAAAAAACCAAGGAAGTTCCTCCTGTTGAGGCCACAGCACCACCTGCTGAAACGTCACAGTTAGCCACACCGCCCGCTGAAACATCACAGTTAGCCACACCACCCGCTGAAACATCACAGTTAGAGGATGGTAGAACAGAAGTACAAAATTTGGATGACAACAGCAACCAATCAAGTGGTTGAACCTAGTGATTTGGTTACTTCACAATGCCTTCAAAGTACATAACGATATAGCTAGGTTTGTATCACAATTCCTTAGAGTTAGGGAGTACATCACTTGTTAACCCCCAACACAGTACATGCATGTACTGCTTGTGATTTTAGAGTAAAAATTGGAAGGGGGACACTTGCAGTCTTCTGAGGATTGCAGCAACAACCGTTTTCTTCTCTGTAATTCAAAACAGGTTGTAATTTAGTAGGATCGCATACTGTAGAAAGTTTGGCAGGTTTGCCTGTTGCAAAAAGATCTTTCCGCCTGCTATGGAGCCAGAAAAACCTTAAA]




>consensus_12630#1
AGAAGCAGGACGGAAGAGATCTCTTATTTGAAGTCAGCAGCTGTTTATAGTTGCTTTCTT
GGAACGTCAGCAAACTTGCGGTATCAGATCATTGCTGGTTTAGTGGAGCATCGGCTAGGA
GAGAGTCTAGCTACTAGCTACAATCAGCCACTTCTTGCTAGTTTGTTGTCCTTTGTGGCA
AGGACAGTGAACTCATACTGGGGAACACAGCAATGGGTTGATCTTGCGAGATATACTGGA
CTACAAAAAACCAAGGAAGTTCCTCCTGTTGAGGCCACAGCACCACCTGCTGAAACGTCA
CAGTTAGCCACACCGCCCGCTGAAACATCACAGTTAGCCACACCACCCGCTGAAACATCA
CAGTTAGAGGATGGTAGAACAGAAGTACAAAATTTGGATGACAACAGCAACCAATCAAGT
GGTTGAACCTAGTGATTTGGTTACTTCACAATGCCTTCAAAGTACATAACGATATAGCTA
GGTTTGTATCACAATTCCTTAGAGTTAGGGAGTACATCACTTGTTAACCCCCAACACAGT
ACATGCATGTACTGCTTGTGATTTTAGAGTAAAAATTGGAAGGGGGACACTTGCAGTCTT
CTGAGGATTGCAGCAACAACCGTTTTCTTCTCTGTAATTCAAAACAGGTTGTAATTTAGT
AGGATCGCATACTGTAGAAAGTTTGGCAGGTTTGCCTGTTGCAAAAAGATCTTTCCGCCT
GCTATGGAGCCAGAAAAACCTTAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12630#0      ATTTCTTTACAGTGTGGCTTCCTGCTCCTACTATTTCAGTCCTTTCTTATGCTGATGATG 60
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      GTTCTGGTGAGAGTTTGGAGTTCGTCAAAGGCCTTTTAGGATCATTGCCAGATAATGCAT 120
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      TCCAAAAGAATGTATTGGGTCAAAATTGGAATATGAAGCAGAGAGTTGCAGCAGTGTTAG 180
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      TTGGTGGTTTGAAACTTGCTAGCGTTGGGTTTATTTCTAGTGTGGGGGCTGGAGCTTCCT 240
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      CGGATCTCCTGTATGCTGCTCGAGGTGTGCTGAAATCTTCAGTGAATGCAGAAGCAGGAC 300
consensus_12630#1      -------------------------------------------------AGAAGCAGGAC 11
                                                                        ***********

consensus_12630#0      GGAAGAGATCTCCTATTTGGAAGTCAGCAGCTGTTTATAGTTGCTTTCTTGGAACGTCAG 360
consensus_12630#1      GGAAGAGATCTCTTATTTG-AAGTCAGCAGCTGTTTATAGTTGCTTTCTTGGAACGTCAG 70
                       ************ ****** ****************************************

consensus_12630#0      CAAACTTGCGGTATCAGATCATTGCTGGTTTAGTGGAGCATCGGCTAGGAGAGAGTCTAG 420
consensus_12630#1      CAAACTTGCGGTATCAGATCATTGCTGGTTTAGTGGAGCATCGGCTAGGAGAGAGTCTAG 130
                       ************************************************************

consensus_12630#0      CTACTAGCTACAATCAGCCACTTCTTGCTAGTTTGTTGTCCTTTGTGGCAAGGACAGTGA 480
consensus_12630#1      CTACTAGCTACAATCAGCCACTTCTTGCTAGTTTGTTGTCCTTTGTGGCAAGGACAGTGA 190
                       ************************************************************

consensus_12630#0      ACTCATACTGGGGAACACAGCAGTGGGTTGATCTTGCGAGATATACTGGACTACAAAAAA 540
consensus_12630#1      ACTCATACTGGGGAACACAGCAATGGGTTGATCTTGCGAGATATACTGGACTACAAAAAA 250
                       ********************** *************************************

consensus_12630#0      CCAAGGAAGTTCCTCCTGTTGAGGCCACAGCACCACCTGCTGAAACGTCACAGTTAGCCA 600
consensus_12630#1      CCAAGGAAGTTCCTCCTGTTGAGGCCACAGCACCACCTGCTGAAACGTCACAGTTAGCCA 310
                       ************************************************************

consensus_12630#0      CACCGCCCGCTGAAACATCACAGTTAGCCACACCACCCGCTGAAACATCACAGTTAGAGG 660
consensus_12630#1      CACCGCCCGCTGAAACATCACAGTTAGCCACACCACCCGCTGAAACATCACAGTTAGAGG 370
                       ************************************************************

consensus_12630#0      ATGGTAGAACAGAAGTACAAAATTTGGATGACAACAGCAACCAATCAAGTGGTTGAACCT 720
consensus_12630#1      ATGGTAGAACAGAAGTACAAAATTTGGATGACAACAGCAACCAATCAAGTGGTTGAACCT 430
                       ************************************************************

consensus_12630#0      AGTGATTTGGTTACTTCACAATGCCTTCAAAGTACATAACGATATAGCTAGGTTTGTATC 780
consensus_12630#1      AGTGATTTGGTTACTTCACAATGCCTTCAAAGTACATAACGATATAGCTAGGTTTGTATC 490
                       ************************************************************

consensus_12630#0      ACAATTCCTTAGAGTTAGGGAGTACATCACTTGTTAACCCCCAACACAGTACATGCATGT 840
consensus_12630#1      ACAATTCCTTAGAGTTAGGGAGTACATCACTTGTTAACCCCCAACACAGTACATGCATGT 550
                       ************************************************************

consensus_12630#0      ACTGCTTGTGATTTTAGAGTAAAAATTGGAAGGGGGACACTTGCAGTCTTCTGAGGATTG 900
consensus_12630#1      ACTGCTTGTGATTTTAGAGTAAAAATTGGAAGGGGGACACTTGCAGTCTTCTGAGGATTG 610
                       ************************************************************

consensus_12630#0      CAGCAACAACCGTTTTTCTTCTCTGTAATTCAAAACAGGTTGTAATTTAGTAGGATCGCA 960
consensus_12630#1      CAGCAACAACCGTTTT-CTTCTCTGTAATTCAAAACAGGTTGTAATTTAGTAGGATCGCA 669
                       **************** *******************************************

consensus_12630#0      TACTGTAGAAAGTTTGGCAGGTTTGCCTGTTGCAATAAAATCTTTCCGCCTGCTATGGAG 1020
consensus_12630#1      TACTGTAGAAAGTTTGGCAGGTTTGCCTGTTGCAAAAAGATCTTTCCGCCTGCTATGGAG 729
                       *********************************** ** *********************

consensus_12630#0      CCAGATGTTTCAGTGTTTGCAGATTTTATCGTCCGACATCGCCCTGGTAAAGATGGTAGG 1080
consensus_12630#1      CCAGAAAAACCTTAAA-------------------------------------------- 745
                       *****     *                                                 

consensus_12630#0      CAAGCAAGTCCCTGGATACTAATGTACGTGGCATCTCTTCCTTGAACTCTCTTCCTATAT 1140
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      ATGGAAGTTTTGCATCCACCTCATCTTTAGTTGCGAAGAAAGCAGTCTAGAAAGGTGAAG 1200
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      ATAGCTAAACGGTGTGACAAGCAAGGTAATAGAAAGGCGCGATCATGGCGAGTGCCAAGG 1260
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      CGATGGCGCAGGATGAGCATCACTTTGTTCTGAAGAGTGGTCATGCCATCCCTGCAGTTG 1320
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      GGTTAGGCACTTGGAGGGCCGGCTCAGATACTGCTCACTCCGTTCAGACAGCCATCACTG 1380
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      AGGCTGGATACAGGCATGTAGATACGGCTGCTCAATATGGAATAGAACAGGAGGTCGGCA 1440
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      AAGGGCTTAAAGCTGCGATGGAAGCTGGAATCAACAGGAAAGATTTGTTTGTGACGTCAA 1500
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      AAATATGGTGCACAAACTTGGCTCCTGAGAGAGTTCGACCAGCATTAAAGAACACGCTGA 1560
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      AGGATCTCCAGTTGGATTATATCGACCTTTACCTTATTCATTGGCCCTTCCGTCTAAAAG 1620
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      ATGGAGCACACCAGCCTCCTGAGGCTGGGGAAGTCTTGGAGTTTGACATGGAGGCAGTAT 1680
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      GGAGGGAAATGGAGAGACTTGTGACAGATGGACTGGTTAAGGACATTGGTGTCTGCAATT 1740
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      TCTCAGTTACCAAGCTCAACAGACTGTTGCAATCAGCTAATATTCCACCTGCAGTATGCC 1800
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      AGATGGAAATGCACCCTGGTTGGAAGAACAATAAGATTTTCGAGGCCTGCAAAAAACATG 1860
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      GAATTCATGTTACTGCCTACTCCCCACTGGGTTCTTCTGAAAAGAACCTTGCGCATGATC 1920
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      CAGTTGTCGAGAAGATAGCCAACAAGCTGAACAAGACTCCAGGTCAAGTGCTCATCAAGT 1980
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      GGGCTCTCCAAAGGGGAACAAGCGTTATTCCAAAATCAACTAAAGATGAAAGGATTAAGG 2040
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      AGAATATGCAGGTGTTTGGATGGGAGATCCCTGAAGAGGACTTCCAGGTCTTGTGCGGCA 2100
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      TCAAAGATGAGAAGCGAGTCCTGACAGGAGAGGAGCTCTTCGTGAACAAGACCCATGGGC 2160
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      CATACAAGAGTGCATCTGAGGTCTGGGATAACGAGGACTAAGCTGCCATGTTTCACCCAA 2220
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      AGATATGGCAAATAATGGTTATGATGTTGGTCATGCACGAAGGAGTTATGTGATGTTCTC 2280
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      CAAGCACTGTGACGAAACCAGCTAACTCAGCACAAGATGTACTACTATGTGTAAAACTAG 2340
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      TATTGTTCTATGTGTGCTCTTCTTCAAGCTTTGTGTAACCAGCTTCTCAGCACAAGATGT 2400
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      ACAGCCAGTGCTGTAAGATAAATAAAAGTATCATGGCTTTGCCGTTGCACTTGCTACTAA 2460
consensus_12630#1      ------------------------------------------------------------
                                                                                   

consensus_12630#0      AAAGAAAA 2468
consensus_12630#1      --------