These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1264#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [TCAAATGAGAACTTTGAAGGCCGAAGAGGAGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTAAGCCGATCCTAAGGGACGGGGTAACCCCGGCAGAGAGCGCGACCACGNNTNNCCCCGAAAGGAATCGGGTTAAGATTTCCCGAGCCGGGACGTGGCGGTTGACGGCGACGTTAGGAAGTCCGGAGACGCCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGCTTAACGGCCCGCCAACCCTGGAAACGGTTCAGCCGGAGGTAGGGTCCAGCNGCCGGAAGAGCACCGNACGTTGCGCGGTTTCCGGTTCGNCCCCGGGGGCCCCTTTGAAAATCCCGAGGACCCGANTTACCCTTCCANGGCCCGGTCGTAC] [+] EMBL AU069098 [TCAAATGAGAACTTTGAAGGCCGAAGAGGAGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTAAGCCGATCCTAAGGGACGGGGTAACCCCGGCAGAGAGCGCGACCACGNNTNNCCCCGAAAGGAATCGGGTTAAGATTTCCCGAGCCGGGACGTGGCGGTTGACGGCGACGTTAGGAAGTCCGGAGACGCCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGCTTAACGGCCCGCCAACCCTGGAAACGGTTCAGCCGGAGGTAGGGTCCAGCNGCCGGAAGAGCACCGNACGTTGCGCGGTTTCCGGTTCGNCCCCGGGGGCCCCTTTGAAAATCCCGAGGACCCGANTTACCCTTCCANGGCCCGGTCGTAC] consensusID : consensus_1264#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 182 fasta sequence [GCGCGANCGGGNCGGACGGCCCGTCGTGGCAGATCTTNGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGAGGAGAAANGTTCCATGTTGAACNGCACTTGCACATGGGTAAGCCGATCCTAAGGGACGGGGTAACCCCGGCAGAGAGCGCGACCACNCGCGTGACCCCGA] [-] EMBL AU068696 [GCGCGANCGGGNCGGACGGCCCGTCGTGGCAGATCTTNGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGAGGAGAAANGTTCCATGTTGAACNGCACTTGCACATGGGTAAGCCGATCCTAAGGGACGGGGTAACCCCGGCAGAGAGCGCGACCACNCGCGTGACCCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1264#0 -------------------------------------------------------TCAAA 5 consensus_1264#1 GCGCGANCGGGNCGGACGGCCCGTCGTGGCAGATCTTNGTGGTAGTAGCAAATATTCAAA 60 ***** consensus_1264#0 TGAGAACTTTGAAGGCCGAAGAGGAGAAAGGTTCCATGT-GAACGGCACTTGCACATGGG 64 consensus_1264#1 TGAGAACTTTGAAGGCCGAAGAGGAGAAANGTTCCATGTTGAACNGCACTTGCACATGGG 120 ***************************** ********* **** *************** consensus_1264#0 TAAGCCGATCCTAAGGGACGGGGTAACCCCGGCAGAGAGCGCGACCACGNN--TNNCCCC 122 consensus_1264#1 TAAGCCGATCCTAAGGGACGGGGTAACCCCGGCAGAGAGCGCGACCACNCGCGTGACCCC 180 ************************************************ * **** consensus_1264#0 GAAAGGAATCGGGTTAAGATTTCCCGAGCCGGGACGTGGCGGTTGACGGCGACGTTAGGA 182 consensus_1264#1 GA---------------------------------------------------------- 182 ** consensus_1264#0 AGTCCGGAGACGCCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGCTTAACGGCCCGCC 242 consensus_1264#1 ------------------------------------------------------------ consensus_1264#0 AACCCTGGAAACGGTTCAGCCGGAGGTAGGGTCCAGCNGCCGGAAGAGCACCGNACGTTG 302 consensus_1264#1 ------------------------------------------------------------ consensus_1264#0 CGCGGTTTCCGGTTCGNCCCCGGGGGCCCCTTTGAAAATCCCGAGGACCCGANTTACCCT 362 consensus_1264#1 ------------------------------------------------------------ consensus_1264#0 TCCANGGCCCGGTCGTAC 380 consensus_1264#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||