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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12646#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2144 fasta sequence
[CTGCGGCAAGCGCTTTTTTGACCGCTTCTGCCGTCTCCCTCCTCACACGGCACCCGGCTCGCGTCTCTCCTCCCCCCTACTACTCTGATCCACCGGGTAGTACTAGACGCGCTACTACTGCCGCTGTACTGCTCTGCCACCACTTCTCCACTCCACTCCACTCTCCTCTACTACCACCGCCGCTCTCGTCTCGTCTCGTCTCGACTCGACTCGCATTGCGCCTGTGCTGTGCTGTGGTGGTGGCCGCGCGGGGGGCGAGATGGCCGGAGGAGGTGGGGGAGGGGGAGGGGCGGCGCCGGCGCCGAAGCACGACGAGCTGACGCCGCACCCCGTCAAGGACCAGCTCCCCGGCGTCTCCTACTGCATCACCAGCCCTCCTCCGTGGCCTGAGGCCATTCTTCTTGGTTTCCAACATTATCTGGTTATGCTGGGAACTACAGTTATCATACCAACTGCACTCGTTCCGCAGATGGGAGGAAACAATGAGGACAAGGCTGTTGTTATCCAAACATTGCTGTTTGTGGCTGGGATTAACACCCTTTTGCAGAGTTTCTTTGGAACCAGATTACCTGCGGTGATTGGTGGATCATACACATTTGTTGTACCAACCATCTCAATCATCCTTGCTGGTCGTTATGCCAACGAACCAAATCCACACACAAAATTCCTCCGAATCATGCGTGGAACACAAGGTGCATTGATCGTGGCTTCTGCTCTACAAATCATATTTGGTTTCAGTGGCCTTTGGCGTAATGTTGCAAGGTATCTGAGTCCATTGTCAGCTGCTCCACTGGTGATGCTAGTCGGCTTTGGACTTTATGAGCTTGGTTTTCCCTCGGTTGCCAAGTGTGTTGAGATTGGTCTTCCAGAACTTATCCTCCTGGTGATCTTCGCAATGTACCTGCCTCATGCTATACACATGATGAAGTCTATCTTCGACCGTTTTGCTGTTCTGTTCACTATTCCTATAGTGTGGCTCTATGCATATCTGCTCACAGTTGGAGGCGCGTACAGGAATGCACCACCAAAGACCCAGTTTCATTGCCGAACTGACCGTTCTGGAATAATTGGTGGTGCTCCTTGGATAAGAGTTCCCTATCCCTTTCAATGGGGTGCTCCAACTTTTGATGCTGGTGAAGCTTTTGCAATGATGGCTGCTTCATTTGTTGCTCTGGTGGAGTCTACTGGTGCTTTCATTGCTGTTTCAAGGTATGCTAGTGCCACACCTCTCCCACCCTCTGTACTTAGCCGTGGAATTGGTTGGCAGGGCATTGGCATTTTGTTGGATGGGCTATTTGGGACTGGAAATGGTTCTTCTGTATCAGTTGAAAATGCTGGATTGCTAGCTTTGACACGTGTTGGTAGCCGAAGAGTGGTGCAGATATCAGCTGGTTTCATGATATTCTTCTCTATTCTGGGAAAATTTGGAGCTGTCTTTGCATCAATACCTCCGCCGATCTTTGCAGCTCTCTATTGTATCTTCTTTGCATATGTCGGTTCTGCTGGGGTTGGTTTCCTTCAGTTCTGCAATCTCAATAGTTTCAGGACCAAGTTCATCCTCGGGTTCTCAGTTTTTATGGGCCTTTCTGTTCCTCAGTACTTCAA-CGAGTACACA-TCTGTTGCTGGTTATGGTCCTGTTCATACACACTCAAGATGGTTCAATGACATCGTGAATGTCATATTCTCGTCAAAGGCATTCGTTGCTGGCTTTGTTGCATATTTGCTGGACAACACGATTCACAG-GCATGATAGT-TCTGTCAGAAAAGATCGAGGACACCATTGGTGGGATAAATTCCGATCA-TACAGG-ACTGACACAAGAAGCGAGGAGTTCTATTCCCTGCCGTTCAACCTGAACAAGTT-CTTCCCATCAGTAT-GAGCATACCGTGGCTAATGCAAGAGTAGGTTACT-GTGTACTGTCTGT-CCCTT-ATGAACAGGTT-CCCT-GGAAGTGGCAAACTGTTGGCCT-GAATTCTCT-AGGTATGTGGAAATCGT-AGACCTTTAAACAAAAGGGAATCCTGTGGTATGAACAAAAAAATATTGGTGGAATTATGGCA-CGGATGTATATTTTAACCTATCTGGGGGCAATAGTAGGAAATTTTGGCTACTCATTTGCACATGAAAAAAGCTCTTGATTCTTAAAAAAAAAA]
[+] EMBL AK073562 [CTGCGGCAAGCGCTTTTTTGACCGCTTCTGCCGTCTCCCTCCTCACACGGCACCCGGCTCGCGTCTCTCCTCCCCCCTACTACTCTGATCCACCGGGTAGTACTAGACGCGCTACTACTGCCGCTGTACTGCTCTGCCACCACTTCTCCACTCCACTCCACTCTCCTCTACTACCACCGCCGCTCTCGTCTCGTCTCGTCTCGACTCGACTCGCATTGCGCCTGTGCTGTGCTGTGGTGGTGGCCGCGCGGGGGGCGAGATGGCCGGAGGAGGTGGGGGAGGGGGAGGGGCGGCGCCGGCGCCGAAGCACGACGAGCTGACGCCGCACCCCGTCAAGGACCAGCTCCCCGGCGTCTCCTACTGCATCACCAGCCCTCCTCCGTGGCCTGAGGCCATTCTTCTTGGTTTCCAACATTATCTGGTTATGCTGGGAACTACAGTTATCATACCAACTGCACTCGTTCCGCAGATGGGAGGAAACAATGAGGACAAGGCTGTTGTTATCCAAACATTGCTGTTTGTGGCTGGGATTAACACCCTTTTGCAGAGTTTCTTTGGAACCAGATTACCTGCGGTGATTGGTGGATCATACACATTTGTTGTACCAACCATCTCAATCATCCTTGCTGGTCGTTATGCCAACGAACCAAATCCACACACAAAATTCCTCCGAATCATGCGTGGAACACAAGGTGCATTGATCGTGGCTTCTGCTCTACAAATCATATTTGGTTTCAGTGGCCTTTGGCGTAATGTTGCAAGGTATCTGAGTCCATTGTCAGCTGCTCCACTGGTGATGCTAGTCGGCTTTGGACTTTATGAGCTTGGTTTTCCCTCGGTTGCCAAGTGTGTTGAGATTGGTCTTCCAGAACTTATCCTCCTGGTGATCTTCGCAATGTACCTGCCTCATGCTATACACATGATGAAGTCTATCTTCGACCGTTTTGCTGTTCTGTTCACTATTCCTATAGTGTGGCTCTATGCATATCTGCTCACAGTTGGAGGCGCGTACAGGAATGCACCACCAAAGACCCAGTTTCATTGCCGAACTGACCGTTCTGGAATAATTGGTGGTGCTCCTTGGATAAGAGTTCCCTATCCCTTTCAATGGGGTGCTCCAACTTTTGATGCTGGTGAAGCTTTTGCAATGATGGCTGCTTCATTTGTTGCTCTGGTGGAGTCTACTGGTGCTTTCATTGCTGTTTCAAGGTATGCTAGTGCCACACCTCTCCCACCCTCTGTACTTAGCCGTGGAATTGGTTGGCAGGGCATTGGCATTTTGTTGGATGGGCTATTTGGGACTGGAAATGGTTCTTCTGTATCAGTTGAAAATGCTGGATTGCTAGCTTTGACACGTGTTGGTAGCCGAAGAGTGGTGCAGATATCAGCTGGTTTCATGATATTCTTCTCTATTCTGGGAAAATTTGGAGCTGTCTTTGCATCAATACCTCCGCCGATCTTTGCAGCTCTCTATTGTATCTTCTTTGCATATGTCGGTTCTGCTGGGGTTGGTTTCCTTCAGTTCTGCAATCTCAATAGTTTCAGGACCAAGTTCATCCTCGGGTTCTCAGTTTTTATGGGCCTTTCTGTTCCTCAGTACTTCAA CGAGTACACA TCTGTTGCTGGTTATGGTCCTGTTCATACACACTCAAGATGGTTCAATGACATCGTGAATGTCATATTCTCGTCAAAGGCATTCGTTGCTGGCTTTGTTGCATATTTGCTGGACAACACGATTCACAG GCATGATAGT TCTGTCAGAAAAGATCGAGGACACCATTGGTGGGATAAATTCCGATCA TACAGG ACTGACACAAGAAGCGAGGAGTTCTATTCCCTGCCGTTCAACCTGAACAAGTT CTTCCCATCAGTAT GAGCATACCGTGGCTAATGCAAGAGTAGGTTACT GTGTACTGTCTGT CCCTT ATGAACAGGTT CCCT GGAAGTGGCAAACTGTTGGCCT GAATTCTCT AGGTATGTGGAAATCGT AGACCTTTAAACAAAAGGGAATCCTGTGGTATGAACAAAAAAATATTGGTGGAATTATGGCA CGGATGTATATTTTAACCTATCTGGGGGCAATAGTAGGAAATTTTGGCTACTCAT ]
[+] EMBL AU092909 [ ACCAAGTTCATCCTCGGGTTCTCAGTTTTTATGGGCCTTTCTGTTCCTCAGTACTTCAA CGAGTACACA TCTGTTGCTGGTTATGGTCCTGTTCATACACACTCAAGATGGTTCAATGACATCGTGAATGTCATATTCTCGTCAAAGGCATTCGTTGCTGGCTTTGTTGCATATTTGCTGGACAACACGATTCACAG GCATGATAGT TCTGTCAGAAAAGATCGAGGACACCATTGGTGGGATAAATTCCGATCA TACAGG ACTGACACAAGAAGCGAGGAGTTCTATTCCCTGCCGTTCAACCTGAACAAGTT CTTCCCATCAGTAT GAGCATACCGTGGCTAATGCAAGAGTAGGTTACT GTGTACTGTCTGT CCCTT ATGAACAGGTT CCCT GGAAGTGGCAAACTGTTGGCCT GAATTCTCT AGGTATGTGGAAATCGT AGACCTTTAAACAAAAGGGAATCCTGTGGTATGAACAAAAAAATATTGGTGGAATTATGGCA CGGATGTATATTTTAACCTATCTGGGGGCAATAGTAGGAAATTTTGGCTAaaaaaa ]
[+] EMBL BI806760 [ GCCCTTCTGTTCCTCAGTACTTCAACCGAGTACACATTCTGTTGCTGGTTATGG CC TTCATACACACTCAAGATGGTTCAATGACATCGTGAATGTCATATTCTCGTCAAAGGCATTCGTTGCTGGCTTTGTTGCATATTTGCTGGACAACACGATTCACAG GCATGATAGT TCTGTCAGAAAAGATCGAGGACACCATTGGTGGGATAAATTCCGATCA TACAGG ACTGACACAAGAAGCGAGGAGTTCTATTCCCTGCCGTTCAACCTGAACAAGTT CTTCCCATCAGTAT GAGCATACCGTGGCTAATGCAAGAGTAGGTTACT GTGTACTGTCTGT CCCTT ATGAACAGGTT CCCT GGAAGTGGCAAACTGTTGGCCT GAATTCTCT AGGTATGTGGAAATCGT AGACCTTTAAAC AAAGGGAATCCTGTGGTATGAACAAAAAAATATTGGTGGAATTATGGCA CGGATGTATATTTTAACCTATCTGGGGGC ATAGTAGGAAATTTTGGCTACTCATTTGCACATGAAAAAA ]
[+] EMBL BI805186 [ TTCACAGCGCATGATAGTGTCTGTCAGAAAAGATCGAGGACACCATTGGTGGGATAAATTCCGATCA TACAGG ACTGACACAAGAAGCGAGGAGTTCTATTCCCTGCCGTTCAACCTGAACAAGTT CTTCCCATCAGTAT GAGCATACCGTGGCTAATGCCAGAGTAGGTTACT GTGTACTGTCTGT CCCTT ATGAACAGGTT CCCT GGAAGTGGCAAACTGTTGGCCT GAATTCTCT AGGTATGTGGAAATCGT AGACCTTTAAACCAAAGGGAATCCTGTGGTATGTACCAAAAAATATTGGTGGAATTATGGCACCGGATGTATATTTTAACCTATCTGGGGGCCATAGTAGGAAATTTTGGCTACTCATTTGCACATGAAAATGGCTCTTGATTCTTAAAAAAAAAA]
[+] EMBL BI806679 [ ATCGAGGACACCANTGGTGGGATAAATNCCGATCATTACAGGTACTGACACAAGAAGCGAGGAGTTCTATTCCCTGCCGTTCAACCTGAACAAGTTGCTTCCCATCAGTATGGAGCATACCGTGGCTAATGCAAGAGTAGGTTACTGGTGTACTGTCTGTGCCCTTGATGAACAGGTTGCCCTGGGAAGTGGCAAACTGTTGGCCTGGAATTCTCTGAGGTATGTGGAAATCGTGAGACCTTTAAAC AAAGGGAATCCTGTG ]
consensusID : consensus_12646#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2127 fasta sequence
[GTGCGTGAGTCATCGCGGAGTCGTCAGTGTTTCATCGTGTGCGCCGCGCCGCTGCGTGCAGTGCGTTGCGTTCCTCCACTCCCGCGGCGACCGCTTCAACTCGCGCATCTCGAGGAGGCCGGCTCGGCTGCTGCGCCTCACTCTCACTCTCACTCACACTGCAGTGGTGGTAGTGGTAGGCAATGGCGGCGCCGGCGCCGAAGCAGGAGGAACTGCAGCCGCACGCGGTGAAGGACCAGCTGCCGGCCATCTCCTACTGCCTCACCAGCCCTCCCCCATGGCCGGAGGCCATCCTGCTCGGATTCCAGCACTACCTCGTCATGCTCGGCACCACGGTCATCATCCCCACCGCGCTCGTCCCCCAGATGGGCGGCGGCAATGAGGAGAAGGCGCGGGTGATCCAGACGCTGCTGTTCGTCGCCGGCATCAACACGCTGATCCAGAGCTTCCTCGGCACGCGCCTGCCCGCCGTCATCGGGGGCTCCTACACCTTCGTCGCGCCCACCATCTCCATCATCCTCGCCGGCCGCTACAACGGCATTGCCGATCCCCACGAGAAATTCGTGCGCATCATGCGGGGAACGCAGGGCGCACTCATAGTGGCCTCCACGCTCCAAATCATCATGGGGTTCAGTGGGCTCTGGCGGATTGTCGTCAGGCTGCTGAGCCCACTGTCCGCAGCACCATTGGTTGCGCTTGTTGGATTTGGGCTCTATGAGC-TTGGATTCCCAAGTGTTGCCAAATGTGTGGGGATTGGCCTTCCACAAATCATACTGCTGGTGGCTCTTTCCCAGTACATACCTAAGCTGGTGCCTTTGTTGGGGACTGCGTTCGAGCGTTTCGCCATCATAATGTCTGTGGCCCTTGTCTGGCTTTACGCCTTCTTCCTGACTGTTGGTGGGGCGTACAAGAATGCTGCTCCGAAGACACAATTTCACTGTCGAACTGATCGATCTGGGCTTGTAGGGGGTGCTCCATGGATAAGTGTACCTTACCCATTCCAGTGGGGAGCACCAACGTTTGATGCTGGTGAAGCTTTTGCAATGATGGCAGCTTCTTTTGTTGCTCTTGTGGAGTCTACTGGTGCATTCATTGCTGTCTCACGGTACGCCAGTGCAACACCATGCCCTCCTTCTGTTATGAGTCGCGGCATTGGTTGGCAGGGGGTTGGTATTTTGCTGGGTGGCTTATTTGGAACAGCTAATGGATCATCTGTATCTGTTGAAAATGCTGGTTTGCTAGGTTTGACACGTGTTGGCAGCAGACGTGTGGTGCAGATTTCTGCTGGATTTATGATTTTCTTCTCTATTCTTGGGAAATTTGGAGCGGTATTTGCTTCAATTCCAGGCCCAATAATTGCAGCTATATACTGTCTTCTCTTTGCATATGTCGGTATGGCAGGAGTAGGGTTCCTTCAGTTTTGCAACCTGAACAGCTTCCGAACAAAATTCATCGTGGGATTCTCCGTGTTTATGGGTTTTGTCGGTTCCACAGTATTTCAACGAGTACACCTCTGTTGCAGGCTATGGCCCAGTACACACTCACGCAAGATGGTTCAATGATATGATCAATGTGGTATTCTCGTCAAAAGCATTCGTCGGAGGCGCTGTAGCATATTTGTTGGACAATACCCTCCAGAGGCATGACAGCACTGCCAGGAAGGACCGGGGGCACCATTTCTGGGACAGATTCAGGTCGTTCAGGACAGACCCACGCAGCGAGGAGTTCTACTCTCTGCCTTTCAACCTCAACAAGTTCTTCCCATCCTTCTGATTTTGCACGCCAGTGTTTTGTATCAAATTGGGATAGCATTGTAGTACGATTAGTTCTTGGGTAAGTAATTCTAGCATTGCCAGATTGTTGTTTCTCCTAGTGTTTTTATACTCCTGAGTTCTGAATCCTGCAGACCCCAGTGTAAAACTATCTGAGGAAGGAGAAATGACTCGGTATTTTTGGGTGTATATTAGTTCGGATTAACAGTTAAATCAACAAACTGAAAATGCCTAGTTTTTCTTCCCCCGAGGCTGTAATTTCAGCTGTGATTTTACTATCTTCAGTGTAAGCAGTTAAATCCTTTCAGCTGTGATTTCACTATCTTGCTGATCTTCTCGTGGTAAAAAAAAAAAA]
[+] EMBL AK071234 [GTGCGTGAGTCATCGCGGAGTCGTCAGTGTTTCATCGTGTGCGCCGCGCCGCTGCGTGCAGTGCGTTGCGTTCCTCCACTCCCGCGGCGACCGCTTCAACTCGCGCATCTCGAGGAGGCCGGCTCGGCTGCTGCGCCTCACTCTCACTCTCACTCACACTGCAGTGGTGGTAGTGGTAGGCAATGGCGGCGCCGGCGCCGAAGCAGGAGGAACTGCAGCCGCACGCGGTGAAGGACCAGCTGCCGGCCATCTCCTACTGCCTCACCAGCCCTCCCCCATGGCCGGAGGCCATCCTGCTCGGATTCCAGCACTACCTCGTCATGCTCGGCACCACGGTCATCATCCCCACCGCGCTCGTCCCCCAGATGGGCGGCGGCAATGAGGAGAAGGCGCGGGTGATCCAGACGCTGCTGTTCGTCGCCGGCATCAACACGCTGATCCAGAGCTTCCTCGGCACGCGCCTGCCCGCCGTCATCGGGGGCTCCTACACCTTCGTCGCGCCCACCATCTCCATCATCCTCGCCGGCCGCTACAACGGCATTGCCGATCCCCACGAGAAATTCGTGCGCATCATGCGGGGAACGCAGGGCGCACTCATAGTGGCCTCCACGCTCCAAATCATCATGGGGTTCAGTGGGCTCTGGCGGATTGTCGTCAGGCTGCTGAGCCCACTGTCCGCAGCACCATTGGTTGCGCTTGTTGGATTTGGGCTCTATGAGC TTGGATTCCCAAGTGTTGCCAAATGTGTGGGGATTGGCCTTCCACAAATCATACTGCTGGTGGCTCTTTCCCAGTACATACCTAAGCTGGTGCCTTTGTTGGGGACTGCGTTCGAGCGTTTCGCCATCATAATGTCTGTGGCCCTTGTCTGGCTTTACGCCTTCTTCCTGACTGTTGGTGGGGCGTACAAGAATGCTGCTCCGAAGACACAATTTCACTGTCGAACTGATCGATCTGGGCTTGTAGGGGGTGCTCCATGGATAAGTGTACCTTACCCATTCCAGTGGGGAGCACCAACGTTTGATGCTGGTGAAGCTTTTGCAATGATGGCAGCTTCTTTTGTTGCTCTTGTGGAGTCTACTGGTGCATTCATTGCTGTCTCACGGTACGCCAGTGCAACACCATGCCCTCCTTCTGTTATGAGTCGCGGCATTGGTTGGCAGGGGGTTGGTATTTTGCTGGGTGGCTTATTTGGAACAGCTAATGGATCATCTGTATCTGTTGAAAATGCTGGTTTGCTAGGTTTGACACGTGTTGGCAGCAGACGTGTGGTGCAGATTTCTGCTGGATTTATGATTTTCTTCTCTATTCTTGGGAAATTTGGAGCGGTATTTGCTTCAATTCCAGGCCCAATAATTGCAGCTATATACTGTCTTCTCTTTGCATATGTCGGTATGGCAGGAGTAGGGTTCCTTCAGTTTTGCAACCTGAACAGCTTCCGAACAAAATTCATCGTGGGATTCTCCGTGTTTATGGGTTTTGTCGGTTCCACAGTATTTCAACGAGTACACCTCTGTTGCAGGCTATGGCCCAGTACACACTCACGCAAGATGGTTCAATGATATGATCAATGTGGTATTCTCGTCAAAAGCATTCGTCGGAGGCGCTGTAGCATATTTGTTGGACAATACCCTCCAGAGGCATGACAGCACTGCCAGGAAGGACCGGGGGCACCATTTCTGGGACAGATTCAGGTCGTTCAGGACAGACCCACGCAGCGAGGAGTTCTACTCTCTGCCTTTCAACCTCAACAAGTTCTTCCCATCCTTCTGATTTTGCACGCCAGTGTTTTGTATCAAATTGGGATAGCATTGTAGTACGATTAGTTCTTGGGTAAGTAATTCTAGCATTGCCAGATTGTTGTTTCTCCTAGTGTTTTTATACTCCTGAGTTCTGAATCCTGCAGACCCCAGTGTAAAACTATCTGAGGAAGGAGAAATGACTCGGTATTTTTGGGTGTATATTAGTTCGGATTAACAGTTAAATCAACAAACT ]
[+] EMBL OSR3385A [ TCGGCACGCGCCTGCCCGCCGTCATCGGGGGCTCCTACACCTTCGTCGCGCCCACCATCTCCATCATCCTCGCCGGCCGCTACAACGGCATTGCCGATCCCCACGAGAAATTCGTGCGCATCATGCGGGGAACGCAGGGCGCACTCATAGTGGCCTCCACGCTCCAAATCATCATGGGGTTCAGTGGGCTCTGGCGGATTGTCGTCAGGCTGCTGAGCCCACTGTCCGCAGCACCATTGGTTGCGCTTGTTGGATTTGGGCTCTATGAGCTTTGGATTCCCAAGTGTTGCCAAATGTGTGGAGATTGGCCTTCCACAAATCATACTGCTGGTGGCTCTTTCCCAGTACATACCTAAGCTGGTGCCTTT ]
[+] EMBL AK058223 [ GTGAAGCTTTTGCAATGATGGCAGCTTCTTTTGTTGCTCTTGTGGAGTCTACTGGTGCATTCATTGCTGTCTCACGGTACGCCAGTGCAACACCATGCCCTCCTTCTGTTATGAGTCGCGGCATTGGTTGGCAGGGGGTTGGTATTTTGCTGGGTGGCTTATTTGGAACAGCTAATGGATCATCTGTATCTGTTGAAAATGCTGGTTTGCTAGGTTTGACACGTGTTGGCAGCAGACGTGTGGTGCAGATTTCTGCTGGATTTATGATTTTCTTCTCTATTCTTGGGAAATTTGGAGCGGTATTTGCTTCAATTCCAGGCCCAATAATTGCAGCTATATACTGTCTTCTCTTTGCATATGTCGGTATGGCAGGAGTAGGGTTCCTTCAGTTTTGCAACCTGAACAGCTTCCGAACAAAATTCATCGTGGGATTCTCCGTGTTTATGGG TTTGTCGGTTCCACAGTATTTCAACGAGTACACCTCTGTTGCAGGCTATGGCCCAGTACACACTCACGCAAGATGGTTCAATGATATGATCAATGTGGTATTCTCGTCAAAAGCATTCGTCGGAGGCGCTGTAGCATATTTGTTGGACAATACCCTCCAGAGGCATGACAGCACTGCCAGGAAGGACCGGGGGCACCATTTCTGGGACAGATTCAGGTCGTTCAGGACAGACCCACGCAGCGAGGAGTTCTACTCTCTGCCTTTCAACCTCAACAAGTTCTTCCCATCCTTCTGATTTTGCACGCCAGTGTTTTGTATCAAATTGGGATAGCATTGTAGTACGATTAGTTCTTGGGTAAGTAATTCTAGCATTGCCAGATTGTTGTTTCTCCTAGTGTTTTTATACTCCTGAGTTCTGAATCCTGCAGACCCCAGTGTAAAACTATCTGAGGAAGGAGAGATGACTCGGTATTTTTGGGTGTATATTAGTTCGGATTAACAGTTAAATCAACAAACTGAAAATGCCTAG ]
[+] EMBL AU032056 [ TGGACAATACCCTCCAGAGGCATGACAGCACTGCCAGGAAGGACCGGGGGCACCATTTCTGGGACAGATTCAGGTCGTTCAGGACAGACCCACGCAGCGAGGAGTTCTACTCTCTGCCTTTCAACCTCAACAAGTTCTTCCCATCCTTCTGATTTTGCACGCCAGTGTTTTGTATCAAATTGGGATAGCATTGTAGTACGATTAGTTCTTGGGTAAGTAATTCTAGCATTGCCAGATTGTTGTTTCTCCTAGTGTTTTTATACTCCTGAGTTCTGAATCCTGCAGACCCCAGTGTAAAACTATCTGAGGAAGGAGAAATGACTCGGTATTTTTGGGTGTATATTAGTTCGGATTAACAGTTAAATCAACAAACTGAAAATGCCTAGTTTTTCTTCCCCCGAGGCTGTAATTTCAGCTGTGATTTTACTATCTTCAGTGTAAGCAGTTAAATCCTTTCAGCTGTGATTTCACTATCTTGCTGATCTTCTCGTGGTAAAAAAAAAAAA]
[-] EMBL D42353 [ GTATCAAATTGGGATAGCA TGTAGTACGATTAGTTCTTGGG AAGTAATTCTAGCATTGCCAGATTGTTGTTTCTCCTAGTGTTTTTATACTCCTGAGTTCTGAATCCTGCAGACCCCAGTGTAAAACTATCTGAGGAAGGAGAAATGACTCGGTATTTTTGGGGGTATATTAGTTCGGATTAACAGTTAAATCAACAAACTGAAAATGCCTAGTTTTTC ]
consensusID : consensus_12646#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 954 fasta sequence
[TGTGGAGATTGGCCTTCCACAAATCATACTGCTGGTGGCTCTTTCCCAGTACATACCTAAGCTGGTGCCTTTGTTGGGGACTGCGTTCGAGCGTTTCGCCATCATAATGTCTGTGGCCCTTGTCTGGCTTTACGCCTTCTTCCTGACTGTTGGTGGGGCGTACAAGAATGCTGCTCCGAAGACACAATTTCACTGTCGAACTGATCGATCTGGGCTTGTAGGGGGTGCTCCATGGATAAGTGTACCTTACCCATTCCAGTGGGGAGCACCAACGTTTGATGCTGGTGAAGCTTTTGCAATGATGGCAGCTTCTTTTGTTGCTCTTGTGGAGTCTACTGGTGCATTCATTGCTGTCTCACGGTACGCCAGTGCAACACCATGCCCTCCTTCTGTTATGAGTCGCGGCATTGGTTGGCAGGGGGTTGGTATTTTGCTGGGTGGCTTNATTGGAACAGCTAATGGATCATCTGTTTCTGTTGAAAATGCTTGTTTGCTAGGTTTTGACACGTGTTGGCAGCAGACGTGTGGTGCAGAATTCTGCTGGATTTATGATTTTCTTCTTTAATCTTGGGAAATTGAAGCGGTATTTGTTTCAATTCAGCCCCAATAATGGCACTATTTACTGCCTCCTCTTTGCTTATGCCGGATGGCAGGAATGGGTTCCTTAATTTTGAAACCTGAAAGTTTCCAACAAAAATAATTGGGGAATTCTCCGGGTTATTGGTTTGCGGGTTCCACAGATTTAAACAAGTCCACCTTGTGTGCAGGTTTGTGGCCCGTACACACTCACCCCAAAAGGTTAAAGGATTTAACAAAGGTGGTTTTTTGAAAAAAGACATTTTTGGGGAGGCCTTGTACTATTTTTTTTGGGAAATAACCTTCCCAAAGGTTTAAACACTTTCCGCGAAAAGACGGGGGGCACTTTTTTGGGACAAATAAAGGGTTTATAGGAAA]
[+] EMBL BE040096 [TGTGGAGATTGGCCTTCCACAAATCATACTGCTGGTGGCTCTTTCCCAGTACATACCTAAGCTGGTGCCTTTGTTGGGGACTGCGTTCGAGCGTTTCGCCATCATAATGTCTGTGGCCCTTGTCTGGCTTTACGCCTTCTTCCTGACTGTTGGTGGGGCGTACAAGAATGCTGCTCCGAAGACACAATTTCACTGTCGAACTGATCGATCTGGGCTTGTAGGGGGTGCTCCATGGATAAGTGTACCTTACCCATTCCAGTGGGGAGCACCAACGTTTGATGCTGGTGAAGCTTTTGCAATGATGGCAGCTTCTTTTGTTGCTCTTGTGGAGTCTACTGGTGCATTCATTGCTGTCTCACGGTACGCCAGTGCAACACCATGCCCTCCTTCTGTTATGAGTCGCGGCATTGGTTGGCAGGGGGTTGGTATTTTGCTGGGTGGCTTNATTGGAACAGCTAATGGATCATCTGTTTCTGTTGAAAATGCTTGTTTGCTAGGTTTTGACACGTGTTGGCAGCAGACGTGTGGTGCAGAATTCTGCTGGATTTATGATTTTCTTCTTTAATCTTGGGAAATTGAAGCGGTATTTGTTTCAATTCAGCCCCAATAATGGCACTATTTACTGCCTCCTCTTTGCTTATGCCGGATGGCAGGAATGGGTTCCTTAATTTTGAAACCTGAAAGTTTCCAACAAAAATAATTGGGGAATTCTCCGGGTTATTGGTTTGCGGGTTCCACAGATTTAAACAAGTCCACCTTGTGTGCAGGTTTGTGGCCCGTACACACTCACCCCAAAAGGTTAAAGGATTTAACAAAGGTGGTTTTTTGAAAAAAGACATTTTTGGGGAGGCCTTGTACTATTTTTTTTGGGAAATAACCTTCCCAAAGGTTTAAACACTTTCCGCGAAAAGACGGGGGGCACTTTTTTGGGACAAATAAAGGGTTTATAGGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12646#1 ------------------------------------------------------------
consensus_12646#2 ------------------------------------------------------------
consensus_12646#0 CTGCGGCAAGCGCTTTTTTGACCGCTTCTGCCGTCTCCCTCCTCACACGGCACCCGGCTC 60
consensus_12646#1 ----------------------------------GTGCGTGAGTCATCGCGGAGTCGTCA 26
consensus_12646#2 ------------------------------------------------------------
consensus_12646#0 GCGTCTCTCCTCCCCCCTACTACTCTGATCCACCGGGTAGTACTAGACGCGCTACTACTG 120
consensus_12646#1 GTGTTTCATCGTGTGCGCCGCGCCGCTGCG-TGCAGTGCGTTGCGTTCCTCCACTCCCGC 85
consensus_12646#2 ------------------------------------------------------------
consensus_12646#0 CCGCTGTACTGCTCTGCCACCACTTCTCCACTCCACTCCACTCTCCTCTACTACCACCGC 180
consensus_12646#1 GGCGACCGCTTCAACTCG-CGCATCTCGAGGAGGCCGGCTCGGCTGCTGCGCCTCACTCT 144
consensus_12646#2 ------------------------------------------------------------
consensus_12646#0 CGCTCTCGTCTCGTCTCGTCTCGACTCGACTCGCATTGCGCCTGTGCTGTGCTGTGGTGG 240
consensus_12646#1 CACTCTCACTCACACTGCAGTGGTGGTAGTGGT--------AGGCAATGGCGGCGCCGGC 196
consensus_12646#2 ------------------------------------------------------------
consensus_12646#0 TGGCCGCGCGGGGGGCGAGATGGCCGGAGGAGGTGGGGGAGGGGGAGGGGCGGCGCCGGC 300
consensus_12646#1 GCCGAAGCAGGAGGAACTGCAGCCGCACGCGGTGAAGGACCAGCTGCCGGCCATCTCCTA 256
consensus_12646#2 ------------------------------------------------------------
consensus_12646#0 GCCGAAGCACGACGAGCTGACGCCGCACCCCGTCAAGGACCAGCTCCCCGGCGTCTCCTA 360
consensus_12646#1 CTGCCTCACCAGCCCTCCCCCATGGCCGGAGGCCATCCTGCTCGGATTCCAGCACTACCT 316
consensus_12646#2 ------------------------------------------------------------
consensus_12646#0 CTGCATCACCAGCCCTCCTCCGTGGCCTGAGGCCATTCTTCTTGGTTTCCAACATTATCT 420
consensus_12646#1 CGTCATGCTCGGCACCACGGTCATCATCCCCACCGCGCTCGTCCCCCAGATGGGCGGCGG 376
consensus_12646#2 ------------------------------------------------------------
consensus_12646#0 GGTTATGCTGGGAACTACAGTTATCATACCAACTGCACTCGTTCCGCAGATGGGAGGAAA 480
consensus_12646#1 CAATGAGGAGAAGGCGCGGGTGATCCAGACGCTGCTGTTCGTCGCCGGCATCAACACGCT 436
consensus_12646#2 ------------------------------------------------------------
consensus_12646#0 CAATGAGGACAAGGCTGTTGTTATCCAAACATTGCTGTTTGTGGCTGGGATTAACACCCT 540
consensus_12646#1 GATCCAGAGCTTCCTCGGCACGCGCCTGCCCGCCGTCATCGGGGGCTCCTACACCTTCGT 496
consensus_12646#2 ------------------------------------------------------------
consensus_12646#0 TTTGCAGAGTTTCTTTGGAACCAGATTACCTGCGGTGATTGGTGGATCATACACATTTGT 600
consensus_12646#1 CGCGCCCACCATCTCCATCATCCTCGCCGGCCGCTACAACGGCATTGCCGATCCCCACGA 556
consensus_12646#2 ------------------------------------------------------------
consensus_12646#0 TGTACCAACCATCTCAATCATCCTTGCTGGTCGTTATGCCAACGAACCAAATCCACACAC 660
consensus_12646#1 GAAATTCGTGCGCATCATGCGGGGAACGCAGGGCGCACTCATAGTGGCCTCCACGCTCCA 616
consensus_12646#2 ------------------------------------------------------------
consensus_12646#0 AAAATTCCTCCGAATCATGCGTGGAACACAAGGTGCATTGATCGTGGCTTCTGCTCTACA 720
consensus_12646#1 AATCATCATGGGGTTCAGTGGGCTCTGGCGGATTGTCGTCAGGCTGCTGAGCCCACTGTC 676
consensus_12646#2 ------------------------------------------------------------
consensus_12646#0 AATCATATTTGGTTTCAGTGGCCTTTGGCGTAATGTTGCAAGGTATCTGAGTCCATTGTC 780
consensus_12646#1 CGCAGCACCATTGGTTGCGCTTGTTGGATTTGGGCTCTATGAGCTTGGATTCCCAAGTGT 736
consensus_12646#2 ------------------------------------------------------------
consensus_12646#0 AGCTGCTCCACTGGTGATGCTAGTCGGCTTTGGACTTTATGAGCTTGGTTTTCCCTCGGT 840
consensus_12646#1 TGCCAAATGTGTGGGGATTGGCCTTCCACAAATCATACTGCTGGTGGCTCTTTCCCAGTA 796
consensus_12646#2 ---------TGTGGAGATTGGCCTTCCACAAATCATACTGCTGGTGGCTCTTTCCCAGTA 51
consensus_12646#0 TGCCAAGTGTGTTGAGATTGGTCTTCCAGAACTTATCCTCCTGGTGATCTTCGCAATGTA 900
*** * ****** ****** ** * ** ** ****** * * ***
consensus_12646#1 CATACCTAAGCTGGTGCCTTTGTTGGGGACTGCGTTCGAGCGTTTCGCCATCATAATGTC 856
consensus_12646#2 CATACCTAAGCTGGTGCCTTTGTTGGGGACTGCGTTCGAGCGTTTCGCCATCATAATGTC 111
consensus_12646#0 CCTGCCTCATGCTATACACATGATGAAGTCTATCTTCGACCGTTTTGCTGTTCTGTTCAC 960
* * *** * * * ** ** * ** ***** ***** ** * * * *
consensus_12646#1 TGTGGCCCTTGTCTGGCTTTACGCCTTCTTCCTGACTGTTGGTGGGGCGTACAAGAATGC 916
consensus_12646#2 TGTGGCCCTTGTCTGGCTTTACGCCTTCTTCCTGACTGTTGGTGGGGCGTACAAGAATGC 171
consensus_12646#0 TATTCCTATAGTGTGGCTCTATGCATATCTGCTCACAGTTGGAGGCGCGTACAGGAATGC 1020
* * * * ** ***** ** ** * * ** ** ***** ** ******* ******
consensus_12646#1 TGCTCCGAAGACACAATTTCACTGTCGAACTGATCGATCTGGGCTTGTAGGGGGTGCTCC 976
consensus_12646#2 TGCTCCGAAGACACAATTTCACTGTCGAACTGATCGATCTGGGCTTGTAGGGGGTGCTCC 231
consensus_12646#0 ACCACCAAAGACCCAGTTTCATTGCCGAACTGACCGTTCTGGAATAATTGGTGGTGCTCC 1080
* ** ***** ** ***** ** ******** ** ***** * * ** ********
consensus_12646#1 ATGGATAAGTGTACCTTACCCATTCCAGTGGGGAGCACCAACGTTTGATGCTGGTGAAGC 1036
consensus_12646#2 ATGGATAAGTGTACCTTACCCATTCCAGTGGGGAGCACCAACGTTTGATGCTGGTGAAGC 291
consensus_12646#0 TTGGATAAGAGTTCCCTATCCCTTTCAATGGGGTGCTCCAACTTTTGATGCTGGTGAAGC 1140
******** ** ** ** ** ** ** ***** ** ***** *****************
consensus_12646#1 TTTTGCAATGATGGCAGCTTCTTTTGTTGCTCTTGTGGAGTCTACTGGTGCATTCATTGC 1096
consensus_12646#2 TTTTGCAATGATGGCAGCTTCTTTTGTTGCTCTTGTGGAGTCTACTGGTGCATTCATTGC 351
consensus_12646#0 TTTTGCAATGATGGCTGCTTCATTTGTTGCTCTGGTGGAGTCTACTGGTGCTTTCATTGC 1200
*************** ***** *********** ***************** ********
consensus_12646#1 TGTCTCACGGTACGCCAGTGCAACACCATGCCCTCCTTCTGTTATGAGTCGCGGCATTGG 1156
consensus_12646#2 TGTCTCACGGTACGCCAGTGCAACACCATGCCCTCCTTCTGTTATGAGTCGCGGCATTGG 411
consensus_12646#0 TGTTTCAAGGTATGCTAGTGCCACACCTCTCCCACCCTCTGTACTTAGCCGTGGAATTGG 1260
*** *** **** ** ***** ***** *** ** ***** * ** ** ** *****
consensus_12646#1 TTGGCAGGGGGTTGGTATTTTGCTGGGTGGCTTATTTGGAACAGCTAATGGATCATCTGT 1216
consensus_12646#2 TTGGCAGGGGGTTGGTATTTTGCTGGGTGGCTTNATTGGAACAGCTAATGGATCATCTGT 471
consensus_12646#0 TTGGCAGGGCATTGGCATTTTGTTGGATGGGCTATTTGGGACTGGAAATGGTTCTTCTGT 1320
********* **** ****** *** *** * **** ** * ***** ** *****
consensus_12646#1 ATCTGTTGAAAATGCTGGTTTGCTAGGTTT-GACACGTGTTGGCAGCAGACGTGTGGTGC 1275
consensus_12646#2 TTCTGTTGAAAATGCTTGTTTGCTAGGTTTTGACACGTGTTGGCAGCAGACGTGTGGTGC 531
consensus_12646#0 ATCAGTTGAAAATGCTGGATTGCTAGCTTT-GACACGTGTTGGTAGCCGAAGAGTGGTGC 1379
** ************ * ******* *** ************ *** ** * *******
consensus_12646#1 AGATTTCTGCTGGATTTATGATTTTCTTCTCTATTCTTGGGAAATTTGGAGCGGTATTTG 1335
consensus_12646#2 AGAATTCTGCTGGATTTATGATTTTCTTCTTTAATCTTGGGAAATT-GAAGCGGTATTTG 590
consensus_12646#0 AGATATCAGCTGGTTTCATGATATTCTTCTCTATTCTGGGAAAATTTGGAGCTGTCTTTG 1439
*** ** ***** ** ***** ******* ** *** ** ***** * *** ** ****
consensus_12646#1 CTTCAATTCCAGGCCCAATAATTGCAGCTATATACTGTCTTCTCTTTGCATATGTCGGTA 1395
consensus_12646#2 TTTCAATTC-AGCCCCAATAATGGCA-CTATTTACTGCCTCCTCTTTGCTTATGCCGG-A 647
consensus_12646#0 CATCAATACCTCCGCCGATCTTTGCAGCTCTCTATTGTATCTTCTTTGCATATGTCGGTT 1499
***** * ** ** * *** ** * ** ** * ******* **** ***
consensus_12646#1 TGGCAGGAGTAGGGTTCCTTCAGTTTTGCAACCTGAACAGCTTCCGAACAAAATTCATCG 1455
consensus_12646#2 TGGCAGGAAT-GGGTTCCTT-AATTTTGAAACCTGAA-AGTTTCC-AACAAAAATAATTG 703
consensus_12646#0 CTGCTGGGGTTGGTTTCCTTCAGTTCTGCAATCTCAATAGTTTCAGGACCAAGTTCATCC 1559
** ** * ** ****** * ** ** ** ** ** ** *** ** ** * **
consensus_12646#1 TGGGATTCTCCGTGTTTATGGGTTTTGTCGGTTCCACAGTATTTCAACGAGTACACCTCT 1515
consensus_12646#2 GGGAATTCTCCGGGTTATTGG--TTTGCGGGTTCCACAG-ATTTAAACAAGTCCACCTTG 760
consensus_12646#0 TCGGGTTCTCAGTTTTTATGGGCCTT-TCTGTTCCTCAGTACTTCAACGAGTACACATCT 1618
* ***** * ** *** ** ***** *** * ** *** *** *** *
consensus_12646#1 GTTGCAGGCTATGGCCCAGTACACACTCACGCAAGATGGTTCAATGATATGATCAATGTG 1575
consensus_12646#2 TGTGCAGGTTTGTGGCCCGTACACACTCACCCCAAAAGGTTAAAGGATTTAACAAAGGTG 820
consensus_12646#0 GTTGCTGGTTATGGTCCTGTTCATACACACTCAAGATGGTTCAATGACATCGTGAATGTC 1678
*** ** * * ** ** ** ** *** * * * **** ** ** * ** **
consensus_12646#1 GTATTCTCGTCAAAAGCATTCGTCGG-AGGCGCTGTAGCATATTTGTTGGACAATACCCT 1634
consensus_12646#2 GTTTTTTGAAAAAAGACATTTTTGGGGAGGCCTTGTACTATTTTTTTTGGGAAATAACCT 880
consensus_12646#0 ATATTCTCGTCAAAGGCATTCGTTGC-TGGCTTTGTTGCATATTTGCTGGACAACACGAT 1737
* ** * *** **** * * *** *** ** *** *** ** * *
consensus_12646#1 --CCAGAGGCATGACAGCACTGCCAGGAAGGACCGGGGGCACCATTTCTGGGACAGATTC 1692
consensus_12646#2 TCCCAAAGGTTTAAACACTTTCCGCGAAAAGACGGGGGGCACT-TTTTTGGGACAAATAA 939
consensus_12646#0 --TCACAGGCATGATAGTTCTGTCAGAAAAGATCGAGGACACCATTGGTGGGATAAATTC 1795
** *** * * * * ** ** * ** *** ** ***** * **
consensus_12646#1 AGGTCGTTCAGGACAGACCCACGCAGCGAGGAGTTCTACTCTCTGCCTTTCAACCTCAAC 1752
consensus_12646#2 AGGGTTTATAGGAAA--------------------------------------------- 954
consensus_12646#0 CGATCATACAGGACTGACACAAGAAGCGAGGAGTTCTATTCCCTGCCGTTCAACCTGAAC 1855
* * ****
consensus_12646#1 AAGTTCTTCCCATCCTTCTGATTTTGCACGCCAGTGTTTTGTATCAAATTGGGATAGCAT 1812
consensus_12646#2 ------------------------------------------------------------
consensus_12646#0 AAGTTCTTCCCATCAGTATGA----GCATACC-GTGGCTAATGCAAGAGTAGGTTA-CTG 1909
consensus_12646#1 TGTAGTACGATTAGTTCTTGGGTAAGTAATTCTAGCATTGCCAGATTGTTGTTTCTCCTA 1872
consensus_12646#2 ------------------------------------------------------------
consensus_12646#0 TGTACTGTCTGTCCCTTATGAACAGGTT-CCCTGGAAGTGGCAAACTGTTG--------- 1959
consensus_12646#1 GTGTTTTTATACTCCTGAGTTCTGAATCCTGCAGACCCCAGTGTAAAACTATCTGAGGAA 1932
consensus_12646#2 ------------------------------------------------------------
consensus_12646#0 --GCCTGAATTCTCTAGGTATGTGGAAATCGTAGACCTTTAAACAAAAGGGAATCCTGTG 2017
consensus_12646#1 GGAGAAATGACTCGGTATTTTTGGGTGTATATTAGTTCGGATTAACAGTTAAATCAACAA 1992
consensus_12646#2 ------------------------------------------------------------
consensus_12646#0 GTATGAACAAAAAAATATTGGTGGAATTATG---GCACGGATGTATATTTTAACCTATCT 2074
consensus_12646#1 ACTGAAAATGCCTAGTTTTTCTTCCCCCGAGGCTGTAATTTCAGCTGTGATTTTACTATC 2052
consensus_12646#2 ------------------------------------------------------------
consensus_12646#0 GGGGGCAATAGTAGGAAATTTTGGCTACTCATTTGCACATGAAAAAAGCTCTTGATTCTT 2134
consensus_12646#1 TTCAGTGTAAGCAGTTAAATCCTTTCAGCTGTGATTTCACTATCTTGCTGATCTTCTCGT 2112
consensus_12646#2 ------------------------------------------------------------
consensus_12646#0 AAAAAAAAAA-------------------------------------------------- 2144
consensus_12646#1 GGTAAAAAAAAAAAA 2127
consensus_12646#2 ---------------
consensus_12646#0 ---------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||