|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12659#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2238 fasta sequence
[CTGTCTCCTCCTCCTCTTCTTCGGTTCTTCCTCCGCCCCATTCCACCCAATCCTGAATCC-GCCCCCCCCCCC-CCCCCCCGAAGCAACAGCGGCGGCGGCTGGCGGGAGGAGGAAGGCAAGGATCCGGCGGGGAGAGGCCGCCTCTCTTTCCCTTCCTTCGCGTCCGTCGTCCTGCTTGCTGCGGCCTGCAGCTGAGCTTGGCGGACAATAATACATATGCTTGTCCTTGCAAACCTATAGTACAGCGATCCTTTCTGTGGAACATTGCATCAGTCTAGAAATAGATTGGAAAGGGGTTTAGCTTGCGTATACTATCTGAGACTCTGGCTCGACAGAATGGTCTCCAATGGTAATGAAGATCTTAAAGCGGATGTTGAACTAGTAGAGTCGACAACAGTGGACAATGATACTGGAGCCCCAGGTGCCAGTACTCTTCCTACTCAAGGTGTTCCACGACAAGGGAAGCAGCGGAATGGGTTTCTGAATTTCTGTAATCGCTTTTCCAGTGGTGACAGGTTTAAGAAGTTGGGTCCTTCGCCTTCATTCAAGTTTCGACAGCTTGCACTTGAGCGAGATGAGTTCTCACGTTCCATCCACTCTGACAGCCATGATAATCATGAGCACTTCCAGTTTATCAGGAAAATTAATTGGGGCCATCTGTGGGTAATGTGCAAGGATTGGATAAAAGAGCCTCTTAATATGGCCCTTTTTGCTTGGATTGCTTGTGTTACTGTATCTGGTGCAATACTATTCCTTGTCATGACTGGAATGCTCAATCGTGCATTGCCTAGCAAATCACAAAGAGATGCCTGGTTTGAAGTAAACAACCAGATTTTGAATGCATTATTCACACTCATGTGCCTTTATCAACACCCAAAGCGGATATATTACTTTGTGCTGTTGTGTCGATGGGAGCAAAAGGATGTTTTGGTCCTTAGAAAAACATATTGCAAAAATGGAACATACAAGCCCAATGAATGGATGCACATGATGGTGGTTGTGGTCCTCCTTAATTTGAACTGCTTTGCTCAGTATGCCTTATGTGGTCTCAACCTAGGATACCGCAGATCTGAACGACCTCCTATCGGTGTTGGCCTGACCATTTCCGTTGCTATCGGGGCAGCGGCATTTGCTGGATTGTATAACATTATCAGTCCTCTTGGGAAGGATTATGACACAGAACTGACTGAAGTTGACCAAGAAGCACAAACTGAACTCACCAGGCCAGCAACCTCACGAACATCACTTGAAAAGAGATACTCTTTCATTCAAAGTGAAGAGCGCCGTTTTGTGGAGAGTAGGCCTGAGTGGGTTGGTGGACTAATGGATTTCTGGGACAATATATCTCTTGCCTACCTGTCAATTTTCTGCAGTTGCTGTGTGTTTGGATGGAATATGCAGAGGCTTGGATTTGGTAACATGTATGTCCATATTGCTACATTTATGCTCTTTTGCCTTGCTCCGTTTTTCATCTTCAACCTGGCTGCTGTCAATATTAACAATGAAAACCTTCGAGAAGCATTAGGGCTTACCGGTCTCGCACTTTGCTTTTTCGGCTTACTGTATGGTGGCTTTTGGAGAATACAGATGAGGAAGAGATTTAACCTACCTGCGAACAACTTCTGCTGCCGCAGTGCAGAAGCCACAGATTGCTTCCAGTGGTTGTGCTGCTCCTCATGCTCCCTTGCCCAGGAGGTGAGAACTGCTGATTATTATGATATTG-CTGAAGATAGGTCATATACAGAGCAGATTACTGCGAGAAGCCAGCA-TGTAATGACCCCATTGTCGCGCGAAGATGGTTTGCCTCTTTTTAGGTCAAATCCAGGTTCGCCATACAGGAGCAGCACTGCTAGTCCATCGATCTTCATTATGGAGAGTCCATCAGCTCCACGGAGATCACCTGGACCTAGCCCTCTGGGGGGTTCGCCGACAATGGGCGACAGGACAATGAAGGCGCCTACTCCATCTGTTCTCCA-CAGAGACGGTGAGCCCGAATTGTAGTACCGGGAAATGCAATGAAGCATTAGTTATCCTGAGTCTATTTTGTATATTTGATGTAAAGAAAACTACCATACACCTTTTTTTTTTCATCTGCAGCTTCCATGCAACTGCCATTGCTTATGAAATGTATAGACTAGACCATCATTTCAGTTCAGTTCTGTACTACTCTGTAAGATTTCTTTTTGAGGTGAAG-TGAATGGTAAGCGAGAGTTGTCAATTTACTAAAAAAAAAAAAGA]
[+] EMBL CB633691 [CTGTCTCCTCCTCCTCTTCTTCGGTTCTTCCTCCGCCCCATTCCACCCAATCCTGAATCCGGCCCCCCCCCCCACCCCCCCGAAGCAACAGCGGCGGCGGCTGGCGGGAGGAGGAAGGCAAGGATCCGGCGGGGAGAGGCCGCCTCTCTTTCCCTTCCTTCGCGTCCGTCGTCCTGCTTGCTGCGGCCTGCAGCTGAGCTTGGCGGACAATAATACATATGCTTGTCCTTGCAAACCTATAGTACAGCGATCCTTTCTGTGGAACATTGCATCAGGCTAAAAATAGATTGGAAAGGGGTTTAGCTTGCGTATACTATCTGAGACTCTGGCTCGACAGAATGGTCTCCAATGGTAATGAAGATCTTAAAGCGGATGTTGAACTAGTAGAGTCGACAACAGTGGACAATGATACTGGAGCCCCAGGTGCCAGTACTCTTCCTACTCAAGGTGTTCCACGACAAGGGAAGCAGCGGAATGGGTTTCTGAATTTCTGTAATTGCTTTTCCAGTGGGGACAGGGTTAAGAAGTTGGGTCCTTCGCCTTCATTCAAGTTTCGACAGCTTGCACTTGAGCGAGATGAGTTCTCACGTTCGATCCACTCTGACAGCCATGATAATCATGAGCACTTCCAGTTTATCAGGAAAATTAATTGGGGCCATCTGTGGGTAATGTGCAAGGATTGGATAAAAGAGCCTCTTAATATGGCCCTTTTTG ]
[+] EMBL AK102680 [ CTTCCTCCGCCCCACTCCACCCAATCCTGAATCC GCCCCCCCCCCC CCCCCCCGAAGCAGCAGCGGCGGCGGCTGGCGGGAGGAGGAAGGCAAGGATCCGGCGGGGAGAGGCCGCCTCTCTTTCCCTTCCTTCGCGTCCGTCGTCCTGCTTGCTGCGGCCTGCAGCTGAGCTTGGCGGACAATAATACATATGCTTGTCCTTGCAAACCTATAGTACAGCGATCCTTTCTGTGGAACATTGCATCAGTCTAGAAATAGATTGGAAAGGGGTTTAGCTTGCGTATACTATCTGAGACTCTGGCTCGACAGAATGGTCTCCAATGGTAATGAAGATCTTAAAGCGGATGTTGAACTAGTAGAGTCGACAACAGTGGACAATGATACTGGAGCCCCAGGTGCCAGTACTCTTCCTACTCAAGGTGTTCCACGACAAGGGAAGCAGCGGAATGGGTTTCTGAATTTCTGTAATCGCTTTTCCAGTGGTGACAGGTTTAAGAAGTTGGGTCCTTCGCCTTCATTCAAGTTTCGACAGCTTGCACTTGAGCGAGATGAGTTCTCACGTTCCATCCACTCTGACAGCCATGATAATCATGAGCACTTCCAGTTTATCAGGGAAATTAATTGGGGCCATCTGTGGGTAATGTGCAAGGATTGGATAAAAGAGCCTCTTAATATGGCCCTTTTTGCTTGGATTGCTTGTGTTACTGTATCTGGTGCAATACTATTCCTTGTCATGACTGGAATGCTCAATCGTGCATTGCCTAGCAAATCACAAAGAGATGCCTGGTTTGAAGTAAACAACCAGATTTTGAATGCATTATTCACACTCATGTGCCTTTATCAACACCCAAAGCGGATATATTACTTTGTGCTGTTGTGTCGATGGGAGCAAAAGGATGTTTTGGTCCTTAGAAAAACATATTGCAAAAATGGAACATACAAGCCCAATGAATGGATGCACATGATGGTGGTTGTGGTCCTCCTTAATTTGAACTGCTTTGCTCAGTATGCCTTATGTGGTCTCAACCTAGGATACCGCAGATCTGAACGACCTCCTATCGGTGTTGGCCTGACCATTTCCGTTGCTATCGGGGCAGCGGCATTTGCTGGATTGTATAACATTATCAGTCCTCTTGGGAAGGATTATGACACAGAACTGACTGAAGTTGACCAAGAAGCACAAACTGAACTCACCAGGCCAGCAACCTCACGAACATCACTTGAAAAGAGATACTCTTTCATTCAAAGTGAAGAGCGCCGTTTTGTGGAGAGTAGGCCTGAGTGGGTTGGTGGACTAATGGATTTCTGGGACAATATATCTCTTGCCTACCTGTCAATTTTCTGCAGTTGCTGTGTGTTTGGATGGAATATGCAGAGGCTTGGATTTGGTAACATGTATGTCCATATTGCTACATTTATGCTCTTTTGCCTTGCTCCGTTTTTCATCTTCAACCTGGCTGCTGTCAATATTAACAATGAAAACCTTCGAGAAGCATTAGGGCTTACCGGTCTCGCACTTTGCTTTTTCGGCTTACTGTATGGTGGCTTTTGGAGAATACAGATGAGGAAGAGATTTAACCTACCTGCGAACAACTTCTGCTGCCGCAGTGCAGAAGCCACAGATTGCTTCCAGTGGTTGTGCTGCTCCTCATGCTCCCTTGCCCAGGAGGTGAGAACTGCTGATTATTATGATATTG CTGAAGATAGGTCATATACAGAGCAGATTACTGCGAGAAGCCAGCA TGTAATGACCCCATTGTCGCGCGAAGATGGTTTGCCTCTTTTTAGGTCAAATCCAGGTTCGCCATACAGGAGCAGCACTGCTAGTCCATCGATCTTCATTATGGAGAGTCCATCAGCTCCACGGAGATCACCTGGACCTAGCCCTCTGGGGGGTTCGCCGACAATGGGCGACAGGACAATGAAGGCGCCTACTCCATCTGTTCTCCA CAGAGACGGTGAGCCCGAATTGTAGTACCGGGAAATGCAATGAAGCATTAGTTATCCTGAGTCTATTTTGTATATTTGATGTAAAGAAAACTACCATACACCTTTTTTTTTTCATCTGCAGCTTCCATGCAACTGCCATTGCTTATGAAATGTATAGACTAGACCATCATTTCAGTTCAGTTCTGTACTACTCTGTAAGATTTCTTTTTGAGGTGAAG TGAATGGTAAGCGAGAGTTGTCAA ]
[+] EMBL CF303996 [ GCTTGCTGCGGCCTGCAGCTGAGCTTGGCGGACAATAATACATATGCTTGTCCTTGCAAACCTATAGTACAGCGATCCTTTCTGTGGAACATTGCATCAGTCTAGAAATAGATTGGAAAGGGGTTTAGCTTGCGTATACTATCTGAGACTCTGGCTCGACAGAATGGTCTCCAATGGTAATGAAGATCTTAAAGCGGATGTTGAACTAGTAGAGTCGACAACAGTGGACAATGATACTGGAGCCCCAGGTGCCAGTACTCTTCCTACTCAAGGTGTTCCACGACAAGGGAAGCAGCGGAATGGGTTTCTGAATTTCTGTAATCGCTTTTCCAGTGGTGACAGGTTTAAGAAGTTGGGTCCTTCGCCTTCATTCAAGTTTCGACAGCTTGCACTTGAGCGAGATGAGTTCTCACGTTCCATCCACTCTGACAGCCATGATAATCATGAGCACTTCCAGTTTATCAGGAAAATTAATTGGGGCCATCTGTGGGTAATGTGCAAGGATTGGATAAAAGAGCCTCTTAATATGGCCCTTTTTGCTTGGATTGCTTGTGTTACTGTATCTGGTGCAATACTATTCCTTGTCATGACTGGAATGCTCAAT ]
[+] EMBL CB674568 [ TTTCTGTGGAACATTGCATCAGTCTAGAAATAGATTGGAAAGGGGTTTAGCTTGCGTATACTATCTGAGACTCTGGCTCGACAGAATGGTCTCCAATGGTAATGAAGATCTTAAAGCGGATGTTGAACTAGTAGAGTCGACAACAGTGGACAATGATACTGGAGCCCCAGGTGCCAGTACTCTTCCTACTCAAGGTGTTCCACGACAAGGGAAGCAGCGGAATGGGTTTCTGAATTTCTGTAATCGCTTTTCCAGTGGTGACAGGTTTAAGAAGTTGGGTCCTTCGCCTTCATTCAAGTTTCGACAGCTTGCACTTGAGCGAGATGAGTTCTCACGTTCCATCCACTCTGACAGCCATGATAATCATGAGCACTTCCAGTTTATCAGGAAAATTAATTGGGGCCATCTGTGGGTAATGTGCAAGGATTGGATAAAAGAGCCTCTTAATATGGCCCTTTTTGCTTGGATTGCTTGTGTTACTGTATCTGGTGCAATACTATTCCTTGTCATGACTGGAATGCTCAATCGTGCATTGCCTAGCAAATCACAAAGAGATGCCTGGTTTGAAGTAAACAACCAGATTTTGAATGCATTATTCACACTCATGTGCCTTTATCAACACCCAAAGCGGATATATTACTTTGTGCTGTTGTGTCGATGGGAGCAAAAGGATGTTTTGGTCCTTAGAAAAACATATTGCAAAAATGGAACATACAAGCCCAATGAATGGATGCACATGATGGTGGTTGTGGTCCTCCTTAATTTGAACTGCTTTGCTCAGTATGCCTTATGTGGTCTCAACCTANGATACCGCAGATCTGA ]
[+] EMBL CB647496 [ GTGCCTTTCTCAACACCCAAAGCGGATATATTACTTTGTGCTGTTGTGTCGATGGGAGCAAAAGGATGTTTTGGTCCTTACAAAAACATATTGCAAAAATGGAACATACAAGCCCAATGAATGGATGCACATGATGGTGGTTGTGGTCCTCCTTAATTTGAACTGCTTTGCTCAGTATGCCTTATGTGGTCTCAACCTAGGATACCGCAGATCTGAACGACCTCCTATCGGTGTTGGCCTGACCATTTCCGTTGCTATCGGGGCAGCGGCATTTGCTGGATTGTATAACATTATCAGTCCTCTTGGGAAGGATTATGACACAGAACTGACTGAAGTTGACCAAGAAGCACAAACTGAACTCACCAGGCCAGCAACCTCACGAACATCACTTGAAAAGAGATACTCTTTCATTCAAAGTGAAGAGCGCCGTTTTGTGGAGAGTAGGCCTGAGTGGGTTGGTGGACTAATGGATTTCTGGGACAATATATCTCTTGCCTACCTGTCAATTTTCTGCAGTTGCTGTGTGTTTGGATGGAATATGCAGAGGCTTGGATTTGGTAACATGTATGTCCATATTGCTACATTTATGCTCTTTTGCCTTGCTCCGTTTTTCATCTTCAACCTGGCTGCTGTCAATATTAACAATGAAAACCTTCGAGAAGCATTANGGCTTACCGGTCTCGCACTTTGCTTTTTCGGCTTACTGTATGGTGGCTTTTGGAGAATACAGATGANGAAGAGATTTAACCTACCTGCGAACAACTTCTGCTGCCGCAGTGCAGAAAGCACAGATTGCTTCCAGTGGTTGTGCT ]
[-] EMBL CB674569 [ TTGCTACATTTATGCTCTTTTGCCTTGCTCCGTTTTTCATCTTCAACCTGGCTGCTGTCAATATTAACAATGAAAACCTTCGAGAAGCATTAGGGCTTACCGGTCTCGCACTTTGCTTTTTCGGCTTACTGTATGGTGGCTTTTGGAGAATACAGATGAGGAAGAGATTTAACCTACCTGCGAACAACTTCTGCTGCCGCAGTGCAGAAGCCACAGATTGCTTCCAGTGGTTGTGCTGCTCCTCATGCTCCCTTGCCCAGGAGGTGAGAACTGCTGATTATTATGATATTG CTGAAGATAGGTCATATACAGAGCAGATTACTGCGAGAAGCCAGCA TGTAATGACCCCATTGTCGCGCGAAGATGGTTTGCCTCTTTTTAGGTCAAATCCAGGTTCGCCATACAGGAGCAGCACTGCTAGTCCATCGATCTTCATTATGGAGAGTCCATCAGCTCCACGGAGATCACCTGGACCTAGCCCTCTGGGGGGTTCGCCGACAATGGGCGACAGGACAATGAAGGCGCCTACTCCATCTGTTCTCCA CAGAGACGGTGAGCCCGAATTGTAGTACCGGGAAATGCAATGAAGCATTAGTTATCCTGAGTCTATTTTGTATATTTGATGTAAAGAAAACTACCATACCCCTTTTTTTTTTCATCTGCAGCTTCCATGCAACTGCCATTGCTTATGAAATGTATAGACTAGACCATCATTTCAGTTCAGTTCTGTACTACTCTGTAAGATTTCTTTTTGAGGTGAAG TGAATGGTAAGCG ]
[-] EMBL CB633692 [ TGTCAATATTAACAATGAAAACCTTCGAGAAGCATTAGGGCTTACCGGTCTCGCACTTTGCTTTTTCGGCTTACTGTATGGTGGCTTTTGGAGAATACAGATGAGGAAGAGATTTAACCTACCTGCGAACAACTTCTGCTGCCGCAGTGCAGAAGCCACAGATTGCTTCCAGTGGTTGTGCTGCTCCTCATGCTCCCTTGCCCAGGAGGTGAGAACTGCTGATTATTATGATATTG CTGAAGATAGGTCATATACAGAGCAGATTACTGCGAGAAGCCAGCA TGTAATGACCCCATTGTCGCGTGAAGATGGTTTGCCTCTTTTTAGGTCAAATCCAGGTTCGCCATACAGGAGCAGCACTGCTAGTCCATCGATCTTCATTATGGAGAGTCCATCAGCTCCACGGAGATCACCTGGACCTAGCCCTCTGGGGGGTTCGCCGACAATGGGCGACAGGACAATGAAGGCGCCTACTCCATCTGTTCTCCA CAGAGACGGTGAGCCCGAATTGTAGTACCGGGAAATGCAATGAAGCATTAGTTATCCTGAGTCTATTTTGTATATTTGATGTAAAGAAAACTACCATACACCTTTTTTTTTTCATCTGCAGCTTCTATGCAACTGCCATTGCTTATGAAATGTATAGACTAGACCATCATTTCAGTTCAGTTCTGTACTACTCTGTAAGATTTCTTTTTGAGGTGAAG GGAATGGTAAGCGAGAGTTGTCAATTTACTAAAAAAAAAAAAGA]
[-] EMBL CB647497 [ ACTGTATGGTGGCTTTGGGAGAATACAGATGAGGAAGAGATTTAACCTACCTGCGAACAACTTCTGCTGCCGCAGTGCAGAAGCCACAGATTGCTTCCAGTGGTTGTGCTGCTCCTCATGCTCCCTTGCCCAGGAGGTGAGAACTGCTGATTATTATGATATTG CTGAAGATAGGTCATATACAGAGCAGATTACTGCGAGAAGCCAGCA TGTAATGACCCCATTGTCGCGCGAAGATGGTTTGCCTCTTTTTAGGTCAAATCCAGGTTCGCCATACAGGAGCAGCACTGCTAGTCCATCGATCTTCATTATGGAGAGTCCATCAGCTCCACGGAGATCACCTGGACCTAGCCCTCTGGGGGGTTCGCCGACAATGGGCGACAGGACAATGAAGGCGCCTACTCCATCTGTTCTCCA CAGAGACGGTGAGCCCGAATTGTAGTACCGGGAAATGCAATGAAGCATTAGTTATCCTGAGTCTATTTTGTATATTTGATGTAAAGAAAACTACCATACACCTTTTTTTTTTCATCTGCAGCTTCCATGCAACTGCCATTGCTTATGAAATGTATAGACTAGACCATCATTTCAGTTCAGTTCTGTACTACTCTGTAAGATTTCTTTTTGAGGTGAAG TGAATGGTAAGCGAGAGTTGT ]
[+] EMBL BQ909212 [ TTGCCCAGGAGGTGAGAACTGCTGATTATTATGATATTGCCTGAAGATAGGTCATATACAGAGCAGATTACTGCGAGAAGCCAGCA TGTAATGACCCCATTGTCGCGTGAAGATGGTTTGCCTCTTTTTAGGTCAAATCCAGGTTCGCCATACAGGAGCAGCACTGCTAGTCCATCGATCTTCATTATGGAGAGTCCATCAGCTCCACGGAGATCACCTGGACCTAGCCCTCTGGGGGGTTCGCCGACAATGGGCGACAGGACAATGAAGGCGCCTACTCCATCTGTTCTCCACCAGAGACGGTGAGCCCGAATTGTAGTACCGGGAAATGCAATGAAGCATTAGTTATCCTGAGTCTATTTTGTATATTTGATGTAAAGAAAACTACCATACACCTTTTTTTTTTCATCTGCAGCTTCTATGCAACTGCCATTGCTTATGAAATGTATAGACTAGACCATCATTTCAGTTCAGTTCTGTACTACTCTGTAAGATTTCTTTTTGAGGTGAAGCTGAATGGTAAGCGAGAGTTGTCAA A AAAAAAA ]
[+] EMBL BI810482 [ TGCGAGAAGCCAGCAGTGTAATGACCCCATT TCGCGTGAAGATGGTTTGCCTCTTTTTAGGTCAAATCCAGGTTCGCCATACAGGAGCAGCACTGCTAGTCCATCGATCTTCATTATGGAGAGTCCATCAGCTCCACGGAGATCACCTGGACCTAGCCCTCTGGGGGGTTCGCCGACAATGGGCGACAGGACAATGAAGGCGCCTACTCCATCTGTTCTCCA CAGAGACGGTGAGCCCGAATTGTAGTACCGGGAAATGCAATGAAGCATTAGTTATCCTGAGTCTATTTTGTATATTTGATGTAAAGAAAACTAC ]
[+] EMBL BI812513 [ GCATTAGTTATCCTGAGTCTATTTTGTATATTTGATGTAAAGAAAACTACCATACACCTTTTTTTTTTCATCTGCAGCTTCTATGC ACTGCC TTGCTTATGAAATGTATAGACTAGACCATCATTTCAGTTCAGTTCTGTACTACTCTGTAAGATTTCTTTTTGAGGTGAAG TGAATGGTAAGCGAGAGTTGTC ATTTACTAAAAAA ]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||