These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12660#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1385 fasta sequence [GCTCTAACTCTAGCTTTGATCCATGCATATCTATCCATCCTTTCTTTGATCGGTCGCAACGCCCAGAAACTGATCGACGATGCAGCAGCAGCAGCATCCGGCGCCGGGCGCGGAGTTCGTGGCGGACCGGGACGCGGCGCGGGCGGAGGTGGAGCGTGCACTGGGCGGGTACAGCTTCCGCGACGGCGGCGCGCTGCTGCTGGAGGACGCCCTGACGCACAGCGTGCACCCCAGGGACGAGGCCGGCGGGCGGGCCAGGCACCAGCGGCTCGAGTTCCTCGGCGACGCTGCGCTCGGCCTCGCCTTCGCCACCATCTTCTACCGGGACGACCCGGGCCTCGACCAGGGGGACCTCACGGTGCTCCGCTCCGCCAACGTCTCCACCCAGAAGCTCGCCCGCGTCGCCGTCCGCCGGCGCCTCTATCCGCTGCTCCGGCGCTACAACTGCGCCCCTCAAGACCACGAAGTCAGCCGTTTTACCAAGTCAGTTGAAGGCCCATATAGTGGTGACCCCATTGAGGGTCCAAGGGTGCTTGCTGATATTGTTGAGGCCATTGTTGGTGCCGTCTATCTTGATTCCAAGCTTGATCTTGAAGTACTCCAGAAGGTTGCGAAGTTGCTGTGTGAGCCAATTATCACCAAAAAGGCATTACTAGAAGATCCTGAGTCCATGTTGAATGAGCTAGGGGGAGAACATAGGGAAGATTTGGAAATCAAAATATTGGCGTGGAGGAAGGTGGCAAACGTAGTCGATGATGGCCGGGAGCAAGCGATCACAACTAGTGGACTTGGCAACGGCTCAGAGGATGAGGTTGGAAAGCTTAGAACAATAAGAATAGAAGAAGCTTAACGAGCAGCACAGCAAGTTACAGTAAATTGGCGACCAGGAACCAATCAGTGAACTAGCAGCCCATATATAGTGGCTGGATCTGAACTTTTGTGGGTCAGGTATGGAACATATTCATGTATTGCGCAGGCACTTCTATGCTATGCTAGCTCTGAACATTGATGCCTGGAGGTTTGTTTCATGGCATGTTCACTGCTAGATAGTAGTAGCTGTGAAATCAATGTATGGCTATTGAAATTGATGCAGACCTGGTACTATTGATGTCTGGTACCCTGGTTATCAGGCCAAGCGTGTCCTAATCTTGTCGAGCGATGAACACTATAGTGTATTTTGTCTTATGTACA-ATGGAGGTTTGTCAT-ACTGAATCTGTGTTTGTACTCAACCAATGTATATGTAGAATACCATGTAAAGTAATATTATTAAAGAATGTGTGATGTTTGTTCATAAGGACTTACTCTCAGTGTCCTAGATATGAAAGAGCATATAGCTTTTCAGGTGGGCTCAGCTATNCATNTCTCATGCCTTGCATGAAAAAAAA] [+] EMBL AK067932 [GCTCTAACTCTAGCTTTGATCCATGCATATCTATCCATCCTTTCTTTGATCGGTCGCAACGCCCAGAAACTGATCGACGATGCAGCAGCAGCAGCATCCGGCGCCGGGCGCGGAGTTCGTGGCGGACCGGGACGCGGCGCGGGCGGAGGTGGAGCGTGCACTGGGCGGGTACAGCTTCCGCGACGGCGGCGCGCTGCTGCTGGAGGACGCCCTGACGCACAGCGTGCACCCCAGGGACGAGGCCGGCGGGCGGGCCAGGCACCAGCGGCTCGAGTTCCTCGGCGACGCTGCGCTCGGCCTCGCCTTCGCCACCATCTTCTACCGGGACGACCCGGGCCTCGACCAGGGGGACCTCACGGTGCTCCGCTCCGCCAACGTCTCCACCCAGAAGCTCGCCCGCGTCGCCGTCCGCCGGCGCCTCTATCCGCTGCTCCGGCGCTACAACTGCGCCCCTCAAGACCACGAAGTCAGCCGTTTTACCAAGTCAGTTGAAGGCCCATATAGTGGTGACCCCATTGAGGGTCCAAGGGTGCTTGCTGATATTGTTGAGGCCATTGTTGGTGCCGTCTATCTTGATTCCAAGCTTGATCTTGAAGTACTCCAGAAGGTTGCGAAGTTGCTGTGTGAGCCAATTATCACCAAAAAGGCATTACTAGAAGATCCTGAGTCCATGTTGAATGAGCTAGGGGGAGAACATAGGGAAGATTTGGAAATCAAAATATTGGCGTGGAGGAAGGTGGCAAACGTAGTCGATGATGGCCGGGAGCAAGCGATCACAACTAGTGGACTTGGCAACGGCTCAGAGGATGAGGTTGGAAAGCTTAGAACAATAAGAATAGAAGAAGCTTAACGAGCAGCACAGCAAGTTACAGTAAATTGGCGACCAGGAACCAATCAGTGAACTAGCAGCCCATATATAGTGGCTGGATCTGAACTTTTGTGGGTCAGGTATGGAACATATTCATGTATTGCGCAGGCACTTCTATGCTATGCTAGCTCTGAACATTGATGCCTGGAGGTTTGTTTCATGGCATGTTCACTGCTAGATAGTAGTAGCTGTGAAATCAATGTATGGCTATTGAAATTGATGCAGACCTGGTACTATTGATGTCTGGTACCCTGGTTATCAGGCCAAGCGTGTCCTAATCTTGTCGAGCGATGAACACTATAGTGTATTTTGTCTTATGTACA ATGGAGGTTTGTCAT ACTGAATCTGTGTTTGTACTCAACCAATGTATATGTAGAATACCATGTAAAGTAATATTATTAAAGAATGTGTG ] [+] EMBL CB657200 [ TGATCCATGCATATCTATCCATCCTTTCTTTGATCGGTCGCAACGCCCAGAAACTGATCGACGATGCAGCAGCAGCAGCATCCGGCGCCGGGCGCGGAGTTCGTGGCGGACCGGGACGCGGCGCGGGCGGAGGTGGAGCGTGCACTGGGCGGGTACAGCTTCCGCGACGGCGGCGCGCTGCTGCTGGAGGACGCCCTGACGCACAGCGTGCACCCCAGGGACGAGGCCGGCGGGCGGGCCAGGCACCAGCGGCTCGAGTTCCTCGGCGACGCTGCGCTCGGCCTCGCCTTCGCCACCATCTTCTACCGGGACGACCCGGGCCTCGACCAGGGGGACCTCACGGTGCTCCGCTCCGCCAACGTCTCCACCCAGAAGCTCGCCCGCGTCGCCGTCCGCCGGCGCCTCTATCCGCTGCTCCGGCGCTACAACTGCGCCCCTCAAGACCACGAAGTCAGCCGTTTTACCAAGTCAGTTGAAGGCCCATATAGTGGTGACCCCATTGAGGGTCCAAGGGTGCTTGCTGATATTGTTGAGGCCATTGTTGGTGCCGTCTATCTTGATTCCAAGCTTGATCTTGAAGTACTCCAGAAGGTTGCGAAGTTGCTGTGTGAGCCAATTATCACCAAAAAGGCATTACTAGAAGATCCTGAGTCCATGTTGAATGAGCTAGGGGGAGAACATAGGGAAGATTTGGAAATCAAAATATTGGCGTGGAGGAAGGTGGCAAACGTAGTCGATGATGGCCGGGAGCAAGCGATCACAACTAGTGGACTTGGCAACGGCTCAGAGGATGAG ] [+] EMBL CB684889 [ ATGCATATCTATCCATCCTTTCTTTGATCGGTCGCAACGCCCAGAAACTGATCGACGATGCAGCAGCAGCAGCATCCGGCGCCGGGCGCGGAGTTCGTGGCGGACCGGGACGCGGCGCGGGCGGAGGTGGAGCGTGCACTGGGCGGGTACAGCTTCCGCGACGGCGGCGCGCTGCTGCTGGAGGACGCCCTGACGCACAGCGTGCACCCCAGGGACGAGGCCGGCGGGCGGGCCAGGCACCAGCGGCTCGAGTTCCTCGGCGACGCTGCGCTCGGCCTCGCCTTCGCCACCATCTTCTACCGGGACGACCCGGGCCTCGACCAGGGGGACCTCACGGTGCTCCGCTCCGCCAACGTCTCCACCCAGAAGCTCGCCCGCGTCGCCGTCCGCCGGCGCCTCTATCCGCTGCTCCGGCGCTACAACTGCGCCCCTCAAGACCACGAAGTCAGCCGTTTTACCAAGTCAGTTGAAGGCCCATATAGTGGTGACCCCATTGAGGGTCCAAGGGTGCTTGCTGATATTGTTGAGGCCATTGTTGGTGCCGTCTATCTTGATTCCAAGCTTGATCTTGAAGTACTCCAGAAGGTTGCGAAGTTGCTGTGTGAGCCAATTATCACCAAAAAGGCATTACTAGAAGATCCTGAGTCCATGTTGAATGAGCTAGGGGGAGAACATAGGGAAGATTTGGAAATCAAAATATTGGCGTGGAGGAAGGTGGCAAACGTA ] [+] EMBL CB658972 [ GCGGCCTAGGCACCAGCGGCTCGAGTTCCTCGGCGACGCTGCGCTCGGCCTCGCCTTCGCCACCATCTTCTACCGGGACGACCCGGGCCTCGACCAGGGGGACCTCACGGTGCTCCGCTCCGCCAACGTCTCCACCCAGAAGCTCGCCCGCGTCGCCGTCCGCCGGCGCCTCTATCCGCTGCTCCGGCGCTACAACTGCGCCCCTCAAGACCACGAAGTCAGCCGTTTTACCAAGTCAGTTGAAGGCCCATATAGTGGTGACCCCATTGAGGGTCCAAGGGTGCTTGCTGATATTGTTGAGGCCATTGTTGGTGCCGTCTATCTTGATTCCAAGCTTGATCTTGAAGTACTCCAGAAGGTTGCGAAGTTGCTGTGTGAGCCAATTATCACCAAAAAGGCATTACTAGAAGATCCTGAGTCCATGTTGAATGAGCTAGGGGGAGAACATAGGGAAGATTTGGAAATCAAAATATTGGCGTGGAGGAAGGTGGCAAACGTAGTCGATGATGGCCGGGAGCAAGCGATCACAACTAGTGGACTTGGCAACGGCTCAGAGGATGAGGTTGGAAAGCTTAGAACAATAAGAATAGAAGAAGCTTAACGAGCAGCACAGCAAGTTACAGTAAATTGGCGACCAGGAACCAATCAGTGAACTAGCAGCCCATATATAGTGGCTGGATCTGAACTTTTGTGGGTCAGGTATGGAACATATTCATGTATTGCGCAGGCACTTCTATGCTATGCTAGCTCTGAAC ] [-] EMBL CB657201 [ GTCAGTTGAAGGCCCATATAGTGGTGACCCCATGNAGGGTCCAAGGGTGCTTGCTGATATTGTTGAGGCCATTGTTGGTGCCGTCTATCTTGATTCCAAGCTTGATCTTGAAGTACTCCAGAAGGTTGCGAAGTTGCTGTGTGAGCCAATTATCACCAAAAAGGCATTACTAGAAGATCCTGAGTCCATGTTGAATGAGCTAGGGGGAGAACATAGGGAAGATTTGGAAATCAAAATATTGGCGTGGAGGAAGGTGGCAAACGTAGTCGATGATGGCCGGGAGCAAGCGATCACAACTAGTGGACTTGGCAACGGCTCAGAGGATGAGGTTGGAAAGCTTAGAACAATAAGAATAGAAGAAGCTTAACGAGCAGCACAGCAAGTTACAGTAAATTGGCGACCAGGAACCAATCAGTGAACTAGCAGCCCATATATAGTGGCTGGATCTGAACTTTTGTGGGTCAGGTATGGAACATATTCATGTATTGCGCAGGCACTTCTATGCTATGCTAGCTCTGAACATTGATGCCTGGAGGTTTGTTTCATGGCATGTTCACTGCTAGATAGTAGTAGCTGTGAAATCAATGTATGGCTATTGAAATTGATGCAGACCTGGTACTATTGATGTCTGGTACCCTGGTTATCAGGCCAAGCGTGTCCTAATCTTGTCGAGCGATGAACACTATAGTGTATTTTGTCTTATGTACA ATGGAGGTTTGTCAT ACTGAATCTGTGTTTGTACTCAACCAATGTATATGTAGAATACCATGTAAAGTAATATTATTAAAGAATGTGTGATGTTTGTTCAT ] [-] EMBL CB658973 [ AGTTGAAGGCCCATATAGTGGTGACCCCATTGAGGGTCCAAGGGTGCTTGCTGATATTGTTGAGGCCATTGTTGGTGCCGTCTATCTTGATTCCAAGCTTGATCTTGAAGTACTCCAGAAGGTTGCGAAGTTGCTGTGTGAGCCAATTATCACCAAAAAGGCATTACTAGAAGATCCTGAGTCCATGTTGAATGAGCTAGGGGGAGAACATAGGGAAGATTTGGAAATCAAAATATTGGCGTGGAGGAAGGTGGCAAACGTAGTCGATGATGGCCGGGAGCAAGCGATCACAACTAGTGGACTTGGCAACGGCTCAGAGGATGAGGTTGGAAAGCTTAGAACAATAAGAATAGAAGAAGCTTAACGAGCAGCACAGCAAGTTACAGTAAATTGGCGACCAGGAACCAATCAGTGAACTAGCAGCCCATATATAGTGGCTGGATCTGAACTTTTGTGGGTCAGGTATGGAACATATTCATGTATTGCGCAGGCACTTCTATGCTATGCTAGCTCTGAACATTGATGCCTGGAGGTTTGTTTCATGGCATGTTCACTGCTAGATAGTAGTAGCTGTGAAATCAATGTATGGCTATTGAAATTGATGCAGACCTGGTACTATTGATGTCTGGTACCCTGGTTATCAGGCCAAGCGTGTCCTAATCTTGTCGAGCGATGAACACTATAGTGTATTTTGTCTTATGTACA ATGGAGGTTTGTCAT ACTGAATCTGTGTTTGTACTCAACCAATGTATATGTAGAATACCATGTAAAGTAATATTAGGAAAGAATGTGTGATGTTTGTTCAAAA ] [+] EMBL BM038315 [ gccggacCCAGGAACCCATCAGTGAACTACCAGCCCATATATAGT GCTGGATCTGAACTTTTGTGGGTCAGGTATGGAACATATTCATGTATTGCGCAGGCACTTCTATGCTATGCTAGCTCTGAACATTGATGCCTGGAGGTTTGTTTCATGGCATGTTCACTGCTAGATAGTAGTAGCTGTGAAATCAATGTATGGCTATTGAAATTGATGCAGACCTGGTACTATTGATGTCTGGTACCCTGGTTATCAGGCCAAGCGTGTCCTAATCTTGTCGAGCGATGAACACTATAGTGTATTTTGTCTTATGTACANATGGAGGTTTGTCATCACTGAATCTGTGTTTGTACTCAACC ATGTATATGTAGAATACCATGTAAAGTAATATTATTAAAGAATGTGTGATGTTTGTTCATATGGACTTACTCTCAGTGTCCTAGATATGAAAGAGCATATAGCTTTTCAGGTGGGCTCAGCTATNCATNTCTCATGCCTTGCATGAAAAAAAA] consensusID : consensus_12660#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 969 fasta sequence [CTGCTGCGGTAGCTAGCTTGCTTGCCGTTCGTTCGTGTGTGTGTGCGTGTGCGTAAGCTTAAGAGGTTGATTGGCTAAGCTAGCAAGCCGGCCGCATGGCGACTTCCGGCGACGTCGAAGAGGTGCCGGAGCCGGGCATGGATCACCCGGCTGAGCCATGCATGGGCGTCGGCGGCGACCAGCTGGTGCCGACGACGGAGGAAATAAGCCTCCCGCTGGCGGCCGAGACGACGTCAGATCACCATGAAGCGGCACAGCTGGAGCAGTCCGCGGAGACGTCGACGTCAGAGTCGGAATCAGAGGAGGTGGCCGCCAAGACGACGTCCGATTCCAGTGAGGCGGCGGCGGTTATTCCCAAGCACGCCGCGGAGGGTTCGTCGACGGCGTCAGAGGAGGAGCAGGTAGCGAAGAAGGAGCTGAAGGAAGCCGAGGAGGACGATGGCCTGCAGGGCGAGAGCGCGCGGGAGAGGCTGAAGCGGCACAGGCGGGAGATGGCCGGGAGGGTGTGGGTGCCGGACATGTGGGGGCAGGAGAAGCTGCTCAAGGACTGGGTGGACTGCGCCGCCTTCGACCGCCCGCTCGTGCCGCCCGACCTGCTCACGGCGCGCCGGGCGCTCGTCGCCGAGTGCTGCGCGCGCCGCCCGGACCGGACGACGACGCCGCCCGGACCGGACGACGACGCCGCCCGCCAGATCCAGCCCTCTCCGGGTGCAAAAAAGCTGCTCCTGATTATCGAGCTTGATTACTAGCAGCGCTTCAATTCGCCTCCAGCTTCACTAGCCATATTAGCTAGCCGCGTGCATACGCCTTCTTTTTTTGCTCAAATAAGAGATATTACCCTTCTTGTTTCCGAGTTGTGAGGGTCCTTTTTTTTTCCTGTTCTAAACTTCTAATTCTGATGATAGTGTGAATTACATTTACTGATTTACACATATATGAGCTTTCCCTGCATAAAGAAAGGGTTTTGTC] [+] EMBL AK108223 [CTGCTGCGGTAGCTAGCTTGCTTGCCGTTCGTTCGTGTGTGTGTGCGTGTGCGTAAGCTTAAGAGGTTGATTGGCTAAGCTAGCAAGCCGGCCGCATGGCGACTTCCGGCGACGTCGAAGAGGTGCCGGAGCCGGGCATGGATCACCCGGCTGAGCCATGCATGGGCGTCGGCGGCGACCAGCTGGTGCCGACGACGGAGGAAATAAGCCTCCCGCTGGCGGCCGAGACGACGTCAGATCACCATGAAGCGGCACAGCTGGAGCAGTCCGCGGAGACGTCGACGTCAGAGTCGGAATCAGAGGAGGTGGCCGCCAAGACGACGTCCGATTCCAGTGAGGCGGCGGCGGTTATTCCCAAGCACGCCGCGGAGGGTTCGTCGACGGCGTCAGAGGAGGAGCAGGTAGCGAAGAAGGAGCTGAAGGAAGCCGAGGAGGACGATGGCCTGCAGGGCGAGAGCGCGCGGGAGAGGCTGAAGCGGCACAGGCGGGAGATGGCCGGGAGGGTGTGGGTGCCGGACATGTGGGGGCAGGAGAAGCTGCTCAAGGACTGGGTGGACTGCGCCGCCTTCGACCGCCCGCTCGTGCCGCCCGACCTGCTCACGGCGCGCCGGGCGCTCGTCGCCGAGTGCTGCGCGCGCCGCCCGGACCGGACGACGACGCCGCCCGGACCGGACGACGACGCCGCCCGCCAGATCCAGCCCTCTCCGGGTGCAAAAAAGCTGCTCCTGATTATCGAGCTTGATTACTAGCAGCGCTTCAATTCGCCTCCAGCTTCACTAGCCATATTAGCTAGCCGCGTGCATACGCCTTCTTTTTTTGCTCAAATAAGAGATATTACCCTTCTTGTTTCCGAGTTGTGAGGGTCCTTTTTTTTTCCTGTTCTAAACTTCTAATTCTGATGATAGTGTGAATTACATTTACTGATTTACACATATATGAGCTTTCCCTGCATAAAGAAAGGGTTTTGTC] consensusID : consensus_12660#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 784 fasta sequence [AAACAAGTCGCTGCCGAAAGGCGCCCGCCGGCTAGCTACGCTAGTGGCAGTGCCCATCAATCCACATTCCAGCCCCTCATATACTCCAGTACTCCACATACGAACAATCGGTCGAAAGCTCTAACTCTAGCTTTGATCCATGCATATCTATCCATCCTTTCTTTGATCGGTCGCAACGCCCAGAAACTGATCGACGATGCAGCAGCAGCAGCATCCGGCGCCGGGCGCGGAGTTCGTGGCGGACCGGGACGCGGCGCGGGCGGAGGTGGAGCGTGCACTGGGCGGGTACAGCTTCCGCGACGGCGGCGCGTCCCGGTCCGCCACGAACTCCGCGCCCGGCGCCGGATGCTGCTGCTGCTGCATCGTCGATCAGTTTCTGGGCGTTGCGACCGATCAAAGAAAGGATGGATAGATATGCATGGATCAAAGCGGACATGTGGGGGCAGGAGAAGCTGCTCAAGGACTGGGTGGACTGCGCCGCCTTCGACCGCCCGCTCGTGCCGCCCGACCTGCTCACGGCGCGCCGGGCGCTCGTCGCCGAGTGCTGCGCGCGCCGCCCGGACCGGACGACGACGCCGCCCGGACCGGACGACGACGCCGCCCGCCAGATCCAGCCCTCTCCGGGTGCAAAAAAGCTGCTCCTGATTATCGAGCTTGATTACTAGCAGCGCTTCAATTCGCCTCCAGCTTCACTAGCCATATTAGCTAGCCGCGTGCATACGCCTTCTTTTTTTGCTNCAATAAGAGATATTACCCTTCTTGTTAAAANNNNNNNNNNNNNNNA] [+] EMBL CA754227 [AAACAAGTCGCTGCCGAAAGGCGCCCGCCGGCTAGCTACGCTAGTGGCAGTGCCCATCAATCCACATTCCAGCCCCTCATATACTCCAGTACTCCACATACGAACAATCGGTCGAAAGCTCTAACTCTAGCTTTGATCCATGCATATCTATCCATCCTTTCTTTGATCGGTCGCAACGCCCAGAAACTGATCGACGATGCAGCAGCAGCAGCATCCGGCGCCGGGCGCGGAGTTCGTGGCGGACCGGGACGCGGCGCGGGCGGAGGTGGAGCGTGCACTGGGCGGGTACAGCTTCCGCGACGGCGGCGCGTCCCGGTCCGCCACGAACTCCGCGCCCGGCGCCGGATGCTGCTGCTGCTGCATCGTCGATCAGTTTCTGGGCGTTGCGACCGATCAAAGAAAGGATGGATAGATATGCATGGATCAAAGCGGACATGTGGGGGCAGGAGAAGCTGCTCAAGGACTGGGTGGACTGCGCCGCCTTCGACCGCCCGCTCGTGCCGCCCGACCTGCTCACGGCGCGCCGGGCGCTCGTCGCCGAGTGCTGCGCGCGCCGCCCGGACCGGACGACGACGCCGCCCGGACCGGACGACGACGCCGCCCGCCAGATCCAGCCCTCTCCGGGTGCAAAAAAGCTGCTCCTGATTATCGAGCTTGATTACTAGCAGCGCTTCAATTCGCCTCCAGCTTCACTAGCCATATTAGCTAGCCGCGTGCATACGCCTTCTTTTTTTGCTNCAATAAGAGATATTACCCTTCTTGTTAAAANNNNNNNNNNNNNNNA] consensusID : consensus_12660#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 742 fasta sequence [GAATCTTCTTATTCATTGTTAAACCTTACATTCAGGCATTTTGTAAAATTTCACTATGTCGACCTAGCTATATTCAACCATATGTAATGTAGGTCTGCTAGAGCGGAGTGAACGTTCAACCAATTGCTTAAGATACACTTAACACACCATGTAAAATTTCACTATGTCGACCTACATTCAACCATTGTTAAACCTTTTGGATGGTTCAGATAGCTGCTTGATTCGGTAAATACAAATTTTGAGTCGATGTCTTAGTTTTCCCTGTTCTTCTTTTCCTGCTGCATGAGGTTTCTTTGTGCCACGTGAGGCATCATCCTATGGGGCAAGTAAAATTTTTCTAACTACAGGTGAACTAGCAGCCCATATATAGTGGCTGGATCTGAACTTTTGTGGGTCAGGTATGGAACATATTCATGTATTGCGCAGGCACTTTTATGCTATGCTAGCTGTGAACATTGATGCCTGGAGGTTTGTTTCATGGCATGTTCACTGCTAGATAGTAGTAGCTGTGAAATCAATGTATGGGTATTGAAATTGATGCAGACTTGGTAATATTGATGTCTGGTCCCTTGGTTATCAGGCCAAGGGTGTCTTAATTTTGTCGAGCGATGAACACTATAGTGTATTTTGTCTTATGTACAATGGAGGTTGGGGAATGTGAATCTGTGTTTGTACTCAACTCAATGTATAGGTAGAATGCCATGTAAAGTAATATTATTATAGAAGGTGTGATTTTTGTTCA] [-] EMBL CB684890 [GAATCTTCTTATTCATTGTTAAACCTTACATTCAGGCATTTTGTAAAATTTCACTATGTCGACCTAGCTATATTCAACCATATGTAATGTAGGTCTGCTAGAGCGGAGTGAACGTTCAACCAATTGCTTAAGATACACTTAACACACCATGTAAAATTTCACTATGTCGACCTACATTCAACCATTGTTAAACCTTTTGGATGGTTCAGATAGCTGCTTGATTCGGTAAATACAAATTTTGAGTCGATGTCTTAGTTTTCCCTGTTCTTCTTTTCCTGCTGCATGAGGTTTCTTTGTGCCACGTGAGGCATCATCCTATGGGGCAAGTAAAATTTTTCTAACTACAGGTGAACTAGCAGCCCATATATAGTGGCTGGATCTGAACTTTTGTGGGTCAGGTATGGAACATATTCATGTATTGCGCAGGCACTTTTATGCTATGCTAGCTGTGAACATTGATGCCTGGAGGTTTGTTTCATGGCATGTTCACTGCTAGATAGTAGTAGCTGTGAAATCAATGTATGGGTATTGAAATTGATGCAGACTTGGTAATATTGATGTCTGGTCCCTTGGTTATCAGGCCAAGGGTGTCTTAATTTTGTCGAGCGATGAACACTATAGTGTATTTTGTCTTATGTACAATGGAGGTTGGGGAATGTGAATCTGTGTTTGTACTCAACTCAATGTATAGGTAGAATGCCATGTAAAGTAATATTATTATAGAAGGTGTGATTTTTGTTCA] consensusID : consensus_12660#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence [ATGCCGGGAGGTTTTGGTCCCGGACATGTGGGCCAGGTAGAAGCTGCTCAAGGACTGGGTGTACTTCTCCGCCGTTCTGCCGCCCGCTCTGTCCGCCCGACCTGCTCACGGCGCTCCGGGCGCTCGTCGCCGAGTGCTGCGCGCTCCGCCCGGACCGGACGACGACGCCGCCCGCCAGATCCAGCTCTCTCCGGGGGCAAAAAAGCTGCTCCTGATTATCGAGCTTGATTACTAGCAGCGCTGTCAATTCGCCTCCAGCTTCACTAGCCATATTTAGCTACCCCGCGGTGCATACGCCTTCTTTTTTTGCTCAAATAAGAGATATTACCCTTCTTGTTTCCGAGTTGTGAAGGT] [+] EMBL BI810527 [ATGCCGGGAGGTTTTGGTCCCGGACATGTGGGCCAGGTAGAAGCTGCTCAAGGACTGGGTGTACTTCTCCGCCGTTCTGCCGCCCGCTCTGTCCGCCCGACCTGCTCACGGCGCTCCGGGCGCTCGTCGCCGAGTGCTGCGCGCTCCGCCCGGACCGGACGACGACGCCGCCCGCCAGATCCAGCTCTCTCCGGGGGCAAAAAAGCTGCTCCTGATTATCGAGCTTGATTACTAGCAGCGCTGTCAATTCGCCTCCAGCTTCACTAGCCATATTTAGCTACCCCGCGGTGCATACGCCTTCTTTTTTTGCTCAAATAAGAGATATTACCCTTCTTGTTTCCGAGTTGTGAAGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12660#1 ------------------------------------------------------------ consensus_12660#4 ------------------------------------------------------------ consensus_12660#2 ------------------------------------------------------------ consensus_12660#0 GCTCTAACTCTAGCTTTGATCCATGCATATCTATCCATCCTTTCTTTGATCGGTCGCAAC 60 consensus_12660#3 ------------------------------------------------------------ consensus_12660#1 ------------------------------------------------------------ consensus_12660#4 ------------------------------------------------------------ consensus_12660#2 ------------------------------------------------------------ consensus_12660#0 GCCCAGAAACTGATCGACGATGCAGCAGCAGCAGCATCCGGCGCCGGGCGCGGAGTTCGT 120 consensus_12660#3 ------------------------------------------------------------ consensus_12660#1 ------------------------------------------------------------ consensus_12660#4 ------------------------------------------------------------ consensus_12660#2 ------------------------------------------------------------ consensus_12660#0 GGCGGACCGGGACGCGGCGCGGGCGGAGGTGGAGCGTGCACTGGGCGGGTACAGCTTCCG 180 consensus_12660#3 ------------------------------------------------------------ consensus_12660#1 ------------------------------------------------------------ consensus_12660#4 ------------------------------------------------------------ consensus_12660#2 ------------------------------------------------------------ consensus_12660#0 CGACGGCGGCGCGCTGCTGCTGGAGGACGCCCTGACGCACAGCGTGCACCCCAGGGACGA 240 consensus_12660#3 ------------------------------------------------------------ consensus_12660#1 ------------------------------------------------------------ consensus_12660#4 ------------------------------------------------------------ consensus_12660#2 ------------------------------------------------------------ consensus_12660#0 GGCCGGCGGGCGGGCCAGGCACCAGCGGCTCGAGTTCCTCGGCGACGCTGCGCTCGGCCT 300 consensus_12660#3 ------------------------------------------------------------ consensus_12660#1 ------------------------------------------------------------ consensus_12660#4 ------------------------------------------------------------ consensus_12660#2 ------------------------------------------------------------ consensus_12660#0 CGCCTTCGCCACCATCTTCTACCGGGACGACCCGGGCCTCGACCAGGGGGACCTCACGGT 360 consensus_12660#3 ------------------------------------------------------------ consensus_12660#1 ----------------------------------------------------------CT 2 consensus_12660#4 ------------------------------------------------------------ consensus_12660#2 ------------------------------------------------------------ consensus_12660#0 GCTCCGCTCCGCCAACGTCTCCACCCAGAAGCTCGCCCGCGTCGCCGTCCGCCGGCGCCT 420 consensus_12660#3 ------------------------------------------------------------ consensus_12660#1 GCTGCGGTAGCTAGCTTGCTTGCCGTTCGTTCGTGTGTGTGTGCGTGTGCGTAAGCTTAA 62 consensus_12660#4 ------------------------------------------------------------ consensus_12660#2 ------------------------------------------------------------ consensus_12660#0 CTATCCGCTGCTCCGGCGCTACAACTGCGCCCCTCAAGACCACGAAGTCAGCCGTTTTAC 480 consensus_12660#3 ------------------------------------------------------------ consensus_12660#1 GAGGTTGATTGGCTAAGCTAGCAAGCCG--GCCGCATGGCGACTTCCGGCGACGTCGAAG 120 consensus_12660#4 ------------------------------------------------------------ consensus_12660#2 ------------------AAACAAGTCGCTGCCGAAAGGCGCCCGCCGGCTA-GCTACGC 41 consensus_12660#0 CAAGTCAGTTGAAGGCCCATATAGTGGTGACCCCATTGAGGGTCCAAGGGTGCTTGCTGA 540 consensus_12660#3 ------------------------GAATCTTCTTATTCATTGTTAAACCTTACATTCAGG 36 consensus_12660#1 AGGTGCCGGAGCCGGGCATGGATCACCCGGCTGAGCCATGCATGGGCGTCGGCGGCGACC 180 consensus_12660#4 ------------------------------------------------------------ consensus_12660#2 TAGTGGCAGTGCC---CATCAATC-CACATTCCAGCCCCTCATATACTCCAGTACTCCAC 97 consensus_12660#0 TATTGTTGAGGCC----ATTGTTGGTGCCGTCTATCTTGATTCCAAGCTTGATCTTGAAG 596 consensus_12660#3 CATTTTGTAAAAT----TTCACTATGTCGACCTAGCTATATTCAACCATATGTAATGTAG 92 consensus_12660#1 AGCTGGTGCCGACGACGGAGGAAATAAGCCTCCCGCTGGCGGCCGAGACGACGTCAGATC 240 consensus_12660#4 ------------------------------------------------------------ consensus_12660#2 ATACGAACAATCGGTCGAAAGCTCTAA--CTCTAGCTT-TGATCCATGC-ATATCTATCC 153 consensus_12660#0 TACTCCAGAAGGTTGCGAAGTTGCTGTGTGAGCCAATTATCACCAAAAAGGCATTACTAG 656 consensus_12660#3 GTCTGCTAGA----GCGGAGTGAACGT-TCAACCAATTGCT--TAAGATACACTTAACAC 145 consensus_12660#1 ACCATGAAGCGGCACAGCTGGAGCAGTCCGCGGAGACGTCGACGTCAGAGTCGGAATCAG 300 consensus_12660#4 ------------------------------------------------------------ consensus_12660#2 ATCCTTTCTTTGATCGGTCGCAAC-GCCCAGAAACTGATCGACGATGCAGCAGCAGCAGC 212 consensus_12660#0 AAGATCCTGAGTCCATGTTGAATGAGCTAGGGGGAG-AACATAGGGAAGATTTGGAAATC 715 consensus_12660#3 ACCATGTAAAATTT-CACTATGTCGACCTACATTCA-ACCATTGTTAAACCTTTTGGATG 203 consensus_12660#1 AGGAGGTGGCCGCCAAGACGACGTCCGATTCCAGTGAGGCGGCGGCGGTTATTCCCAAGC 360 consensus_12660#4 ------------------------------------------------------------ consensus_12660#2 ATCCGGCGCCGGGCGCGGAGTTCGTGGCGGACCGGGACGCGGCGCGGGCGGAGGTGGAGC 272 consensus_12660#0 AAAATATTGGCGTGGAGGAAGGTGGCAAACGTAGTCGATGATGGCCGGGAGCAAGCGATC 775 consensus_12660#3 -----------GTTCAGATAGCTGCTTGATTCGGTAAATACAAATTTTGAGTCGATG-TC 251 consensus_12660#1 ACGC-CGCGGAGGGTTCGTCGACGGCGTCAGAGGAGGAGCA----GGTAGCGAAGAAGGA 415 consensus_12660#4 ------------------------------------------------------------ consensus_12660#2 GTGCACTGGGCGGGTACAGCTTCCGCGACGGCGGCGCGTCC----CGGTCCGCCACGAAC 328 consensus_12660#0 ACAACTAGTGGACTTGGCAACGGCTCAGAGGATGAGGTTGGAAAGCTTAGAACAATAAGA 835 consensus_12660#3 TTAGTTTTCCCTGTTCTTCTTTTCCTGCTGCATGAGGTTT-----CTTTGTGCCACGTGA 306 consensus_12660#1 GCTGAAGGAAGCCGAGGAGGACGATGGC-CTGCAGGGCGAGAGCGCGCGGGAGAGGCTGA 474 consensus_12660#4 ------------------------------------------------------------ consensus_12660#2 TCCGCGCCCGGCGCCGGATGCTGCTGCTGCTGCATCGTC-GATCAGTTTCTGGGCGTTGC 387 consensus_12660#0 ATAGAAGAAGCTTAACGAGCAGCACAGCAAGTTACAGTAAATTGGCGACCAGGAACCAAT 895 consensus_12660#3 --GGCATCATCCTATGGGGCA----AGTAAAATTTTTCTAACT---------------AC 345 consensus_12660#1 AGCGGCACAGGCGGGAGATGGCCGGGAGGGTGTGGGT---GCCGGACATGTGGGGGCAGG 531 consensus_12660#4 -----------------ATG-CCGGGAGGTTTTGG-T---CCCGGACATGTGGGCCAGGT 38 consensus_12660#2 GACCGATCAAAGAAAGGATGGATAGATATGCATGGATCAAAGCGGACATGTGGGGGCAGG 447 consensus_12660#0 CAGTGAACTAGCAGCCCATATATAG---TGGCTGGATCTGAACTTTTGTGGGTCAGGTAT 952 consensus_12660#3 AGGTGAACTAGCAGCCCATATATAG---TGGCTGGATCTGAACTTTTGTGGGTCAGGTAT 402 ** * *** * * ** * consensus_12660#1 AGAAGCTGCTCAAGGACTGGGTGG--ACTGCGCCGCC-TTCGACC---GCCCGCTCGTGC 585 consensus_12660#4 AGAAGCTGCTCAAGGACTGGGTGT--ACTTCTCCGCCGTTCTGCC---GCCCGCTCTGTC 93 consensus_12660#2 AGAAGCTGCTCAAGGACTGGGTGG--ACTGCGCCGCC-TTCGACC---GCCCGCTCGTGC 501 consensus_12660#0 GGAACATATTCATGTATTGCGCAGGCACTTCTATGCTATGCTAGCTCTGAACATTGATGC 1012 consensus_12660#3 GGAACATATTCATGTATTGCGCAGGCACTTTTATGCTATGCTAGCTGTGAACATTGATGC 462 *** * *** * * ** * *** ** * * * * * * * consensus_12660#1 CGCCCGACCTGCT-CACGGCGCGCCGGGCGCTCGTCGCCGAGTGCTGCGCG--CGCCGCC 642 consensus_12660#4 CGCCCGACCTGCT-CACGGCGCTCCGGGCGCTCGTCGCCGAGTGCTGCGCG--CTCCGCC 150 consensus_12660#2 CGCCCGACCTGCT-CACGGCGCGCCGGGCGCTCGTCGCCGAGTGCTGCGCG--CGCCGCC 558 consensus_12660#0 CTGGAGGTTTGTTTCATGGCATGTTCACTGCTAGATAGTAGTAGCTGTGAAATCAATGTA 1072 consensus_12660#3 CTGGAGGTTTGTTTCATGGCATGTTCACTGCTAGATAGTAGTAGCTGTGAAATCAATGTA 522 * * ** * ** *** *** * **** * * * consensus_12660#1 CGGAC-CGGACGACGACGCCGCCCGGACCGGACGACGACGCCGCCCGCCAGATCCAGCCC 701 consensus_12660#4 CGGAC-CGGACGACGACGCCGCCCG----------------------CCAGATCCAGCTC 187 consensus_12660#2 CGGAC-CGGACGACGACGCCGCCCGGACCGGACGACGACGCCGCCCGCCAGATCCAGCCC 617 consensus_12660#0 TGGCTATTGAAATTGATGCAGACCTGGTACTAT--------------TGATGTCTGGTAC 1118 consensus_12660#3 TGGGTATTGAAATTGATGCAGACTTGGTAATAT--------------TGATGTCTGGTCC 568 ** ** ** ** * * * ** * * consensus_12660#1 TCTCCGGGTGCAAAAAAGCTGCTCCTGAT--TATCGAGCT-TGATTACTAGCAGCGCT-T 757 consensus_12660#4 TCTCCGGGGGCAAAAAAGCTGCTCCTGAT--TATCGAGCT-TGATTACTAGCAGCGCTGT 244 consensus_12660#2 TCTCCGGGTGCAAAAAAGCTGCTCCTGAT--TATCGAGCT-TGATTACTAGCAGCGCT-T 673 consensus_12660#0 CCTGGTTATCAGGCCAAGCGTGTCCTAATCTTGTCGAGCGATGAACACTA-TAGTG---- 1173 consensus_12660#3 CTTGGTTATCAGGCCAAGGGTGTCTTAATTTTGTCGAGCGATGAACACTA-TAGTG---- 623 * *** ** * ** * ****** *** **** ** * consensus_12660#1 CAATTCGCCTCCAGCTTCACTAGCCATATT-A--GCTAGCC-GCG--TGCATACGCCTTC 811 consensus_12660#4 CAATTCGCCTCCAGCTTCACTAGCCATATTTA--GCTACCCCGCGG-TGCATACGCCTTC 301 consensus_12660#2 CAATTCGCCTCCAGCTTCACTAGCCATATT-A--GCTAGCC-GCG--TGCATACGCCTTC 727 consensus_12660#0 TATTTTGTCTTATGTACAATGGAGGTTTGTCATACTGAATCTGTGTTTGTACTCAAC-CA 1232 consensus_12660#3 TATTTTGTCTTATGTACAATGGAGGTTGGGGAATGTGAATCTGTGTTTGTACTCAACTCA 683 * ** * ** * * * * * * * * ** * * * consensus_12660#1 TTTTTTTGCTCAAATAAGAGATATTACCCTTCTTGTTTCCGAGTTGTGAGGGTCCTTTTT 871 consensus_12660#4 TTTTTTTGCTCAAATAAGAGATATTACCCTTCTTGTTTCCGAGTTGTGAAGGT------- 354 consensus_12660#2 TTTTTTTGCTNCAATAAGAGATATTACCCTTCTTGTTAAAANNNNNNNNNNNNNNNA--- 784 consensus_12660#0 ATGTATATGTAGAATACCATGTAAAGTAATATTATTAAAGAATGTGTGATGTTTGTTCAT 1292 consensus_12660#3 ATGTATAGGTAGAATGCCATGTAAAGTAATATTATTATAGAAGGTGTGATTTTTGTTCA- 742 * * * * *** * ** * * * consensus_12660#1 TTTTCCTGTTCTAAACTTCTAATTCTGATGATAGTGTGAATTACATTTACTGATTTACAC 931 consensus_12660#4 ------------------------------------------------------------ consensus_12660#2 ------------------------------------------------------------ consensus_12660#0 AAGGACTTACTCTCAGTGTCCTAGATATGAAAGAGCATATAGCTTTTCAGGTGGGCTCAG 1352 consensus_12660#3 ------------------------------------------------------------ consensus_12660#1 ATATATGAGCTTTCCCTGCATAAAGAAAGGGTTTTGTC 969 consensus_12660#4 -------------------------------------- consensus_12660#2 -------------------------------------- consensus_12660#0 CTATNCATNTCTCATGCCTTGCATGAAAAAAAA----- 1385 consensus_12660#3 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||