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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12660#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1385 fasta sequence
[GCTCTAACTCTAGCTTTGATCCATGCATATCTATCCATCCTTTCTTTGATCGGTCGCAACGCCCAGAAACTGATCGACGATGCAGCAGCAGCAGCATCCGGCGCCGGGCGCGGAGTTCGTGGCGGACCGGGACGCGGCGCGGGCGGAGGTGGAGCGTGCACTGGGCGGGTACAGCTTCCGCGACGGCGGCGCGCTGCTGCTGGAGGACGCCCTGACGCACAGCGTGCACCCCAGGGACGAGGCCGGCGGGCGGGCCAGGCACCAGCGGCTCGAGTTCCTCGGCGACGCTGCGCTCGGCCTCGCCTTCGCCACCATCTTCTACCGGGACGACCCGGGCCTCGACCAGGGGGACCTCACGGTGCTCCGCTCCGCCAACGTCTCCACCCAGAAGCTCGCCCGCGTCGCCGTCCGCCGGCGCCTCTATCCGCTGCTCCGGCGCTACAACTGCGCCCCTCAAGACCACGAAGTCAGCCGTTTTACCAAGTCAGTTGAAGGCCCATATAGTGGTGACCCCATTGAGGGTCCAAGGGTGCTTGCTGATATTGTTGAGGCCATTGTTGGTGCCGTCTATCTTGATTCCAAGCTTGATCTTGAAGTACTCCAGAAGGTTGCGAAGTTGCTGTGTGAGCCAATTATCACCAAAAAGGCATTACTAGAAGATCCTGAGTCCATGTTGAATGAGCTAGGGGGAGAACATAGGGAAGATTTGGAAATCAAAATATTGGCGTGGAGGAAGGTGGCAAACGTAGTCGATGATGGCCGGGAGCAAGCGATCACAACTAGTGGACTTGGCAACGGCTCAGAGGATGAGGTTGGAAAGCTTAGAACAATAAGAATAGAAGAAGCTTAACGAGCAGCACAGCAAGTTACAGTAAATTGGCGACCAGGAACCAATCAGTGAACTAGCAGCCCATATATAGTGGCTGGATCTGAACTTTTGTGGGTCAGGTATGGAACATATTCATGTATTGCGCAGGCACTTCTATGCTATGCTAGCTCTGAACATTGATGCCTGGAGGTTTGTTTCATGGCATGTTCACTGCTAGATAGTAGTAGCTGTGAAATCAATGTATGGCTATTGAAATTGATGCAGACCTGGTACTATTGATGTCTGGTACCCTGGTTATCAGGCCAAGCGTGTCCTAATCTTGTCGAGCGATGAACACTATAGTGTATTTTGTCTTATGTACA-ATGGAGGTTTGTCAT-ACTGAATCTGTGTTTGTACTCAACCAATGTATATGTAGAATACCATGTAAAGTAATATTATTAAAGAATGTGTGATGTTTGTTCATAAGGACTTACTCTCAGTGTCCTAGATATGAAAGAGCATATAGCTTTTCAGGTGGGCTCAGCTATNCATNTCTCATGCCTTGCATGAAAAAAAA]
[+] EMBL AK067932 [GCTCTAACTCTAGCTTTGATCCATGCATATCTATCCATCCTTTCTTTGATCGGTCGCAACGCCCAGAAACTGATCGACGATGCAGCAGCAGCAGCATCCGGCGCCGGGCGCGGAGTTCGTGGCGGACCGGGACGCGGCGCGGGCGGAGGTGGAGCGTGCACTGGGCGGGTACAGCTTCCGCGACGGCGGCGCGCTGCTGCTGGAGGACGCCCTGACGCACAGCGTGCACCCCAGGGACGAGGCCGGCGGGCGGGCCAGGCACCAGCGGCTCGAGTTCCTCGGCGACGCTGCGCTCGGCCTCGCCTTCGCCACCATCTTCTACCGGGACGACCCGGGCCTCGACCAGGGGGACCTCACGGTGCTCCGCTCCGCCAACGTCTCCACCCAGAAGCTCGCCCGCGTCGCCGTCCGCCGGCGCCTCTATCCGCTGCTCCGGCGCTACAACTGCGCCCCTCAAGACCACGAAGTCAGCCGTTTTACCAAGTCAGTTGAAGGCCCATATAGTGGTGACCCCATTGAGGGTCCAAGGGTGCTTGCTGATATTGTTGAGGCCATTGTTGGTGCCGTCTATCTTGATTCCAAGCTTGATCTTGAAGTACTCCAGAAGGTTGCGAAGTTGCTGTGTGAGCCAATTATCACCAAAAAGGCATTACTAGAAGATCCTGAGTCCATGTTGAATGAGCTAGGGGGAGAACATAGGGAAGATTTGGAAATCAAAATATTGGCGTGGAGGAAGGTGGCAAACGTAGTCGATGATGGCCGGGAGCAAGCGATCACAACTAGTGGACTTGGCAACGGCTCAGAGGATGAGGTTGGAAAGCTTAGAACAATAAGAATAGAAGAAGCTTAACGAGCAGCACAGCAAGTTACAGTAAATTGGCGACCAGGAACCAATCAGTGAACTAGCAGCCCATATATAGTGGCTGGATCTGAACTTTTGTGGGTCAGGTATGGAACATATTCATGTATTGCGCAGGCACTTCTATGCTATGCTAGCTCTGAACATTGATGCCTGGAGGTTTGTTTCATGGCATGTTCACTGCTAGATAGTAGTAGCTGTGAAATCAATGTATGGCTATTGAAATTGATGCAGACCTGGTACTATTGATGTCTGGTACCCTGGTTATCAGGCCAAGCGTGTCCTAATCTTGTCGAGCGATGAACACTATAGTGTATTTTGTCTTATGTACA ATGGAGGTTTGTCAT ACTGAATCTGTGTTTGTACTCAACCAATGTATATGTAGAATACCATGTAAAGTAATATTATTAAAGAATGTGTG ]
[+] EMBL CB657200 [ TGATCCATGCATATCTATCCATCCTTTCTTTGATCGGTCGCAACGCCCAGAAACTGATCGACGATGCAGCAGCAGCAGCATCCGGCGCCGGGCGCGGAGTTCGTGGCGGACCGGGACGCGGCGCGGGCGGAGGTGGAGCGTGCACTGGGCGGGTACAGCTTCCGCGACGGCGGCGCGCTGCTGCTGGAGGACGCCCTGACGCACAGCGTGCACCCCAGGGACGAGGCCGGCGGGCGGGCCAGGCACCAGCGGCTCGAGTTCCTCGGCGACGCTGCGCTCGGCCTCGCCTTCGCCACCATCTTCTACCGGGACGACCCGGGCCTCGACCAGGGGGACCTCACGGTGCTCCGCTCCGCCAACGTCTCCACCCAGAAGCTCGCCCGCGTCGCCGTCCGCCGGCGCCTCTATCCGCTGCTCCGGCGCTACAACTGCGCCCCTCAAGACCACGAAGTCAGCCGTTTTACCAAGTCAGTTGAAGGCCCATATAGTGGTGACCCCATTGAGGGTCCAAGGGTGCTTGCTGATATTGTTGAGGCCATTGTTGGTGCCGTCTATCTTGATTCCAAGCTTGATCTTGAAGTACTCCAGAAGGTTGCGAAGTTGCTGTGTGAGCCAATTATCACCAAAAAGGCATTACTAGAAGATCCTGAGTCCATGTTGAATGAGCTAGGGGGAGAACATAGGGAAGATTTGGAAATCAAAATATTGGCGTGGAGGAAGGTGGCAAACGTAGTCGATGATGGCCGGGAGCAAGCGATCACAACTAGTGGACTTGGCAACGGCTCAGAGGATGAG ]
[+] EMBL CB684889 [ ATGCATATCTATCCATCCTTTCTTTGATCGGTCGCAACGCCCAGAAACTGATCGACGATGCAGCAGCAGCAGCATCCGGCGCCGGGCGCGGAGTTCGTGGCGGACCGGGACGCGGCGCGGGCGGAGGTGGAGCGTGCACTGGGCGGGTACAGCTTCCGCGACGGCGGCGCGCTGCTGCTGGAGGACGCCCTGACGCACAGCGTGCACCCCAGGGACGAGGCCGGCGGGCGGGCCAGGCACCAGCGGCTCGAGTTCCTCGGCGACGCTGCGCTCGGCCTCGCCTTCGCCACCATCTTCTACCGGGACGACCCGGGCCTCGACCAGGGGGACCTCACGGTGCTCCGCTCCGCCAACGTCTCCACCCAGAAGCTCGCCCGCGTCGCCGTCCGCCGGCGCCTCTATCCGCTGCTCCGGCGCTACAACTGCGCCCCTCAAGACCACGAAGTCAGCCGTTTTACCAAGTCAGTTGAAGGCCCATATAGTGGTGACCCCATTGAGGGTCCAAGGGTGCTTGCTGATATTGTTGAGGCCATTGTTGGTGCCGTCTATCTTGATTCCAAGCTTGATCTTGAAGTACTCCAGAAGGTTGCGAAGTTGCTGTGTGAGCCAATTATCACCAAAAAGGCATTACTAGAAGATCCTGAGTCCATGTTGAATGAGCTAGGGGGAGAACATAGGGAAGATTTGGAAATCAAAATATTGGCGTGGAGGAAGGTGGCAAACGTA ]
[+] EMBL CB658972 [ GCGGCCTAGGCACCAGCGGCTCGAGTTCCTCGGCGACGCTGCGCTCGGCCTCGCCTTCGCCACCATCTTCTACCGGGACGACCCGGGCCTCGACCAGGGGGACCTCACGGTGCTCCGCTCCGCCAACGTCTCCACCCAGAAGCTCGCCCGCGTCGCCGTCCGCCGGCGCCTCTATCCGCTGCTCCGGCGCTACAACTGCGCCCCTCAAGACCACGAAGTCAGCCGTTTTACCAAGTCAGTTGAAGGCCCATATAGTGGTGACCCCATTGAGGGTCCAAGGGTGCTTGCTGATATTGTTGAGGCCATTGTTGGTGCCGTCTATCTTGATTCCAAGCTTGATCTTGAAGTACTCCAGAAGGTTGCGAAGTTGCTGTGTGAGCCAATTATCACCAAAAAGGCATTACTAGAAGATCCTGAGTCCATGTTGAATGAGCTAGGGGGAGAACATAGGGAAGATTTGGAAATCAAAATATTGGCGTGGAGGAAGGTGGCAAACGTAGTCGATGATGGCCGGGAGCAAGCGATCACAACTAGTGGACTTGGCAACGGCTCAGAGGATGAGGTTGGAAAGCTTAGAACAATAAGAATAGAAGAAGCTTAACGAGCAGCACAGCAAGTTACAGTAAATTGGCGACCAGGAACCAATCAGTGAACTAGCAGCCCATATATAGTGGCTGGATCTGAACTTTTGTGGGTCAGGTATGGAACATATTCATGTATTGCGCAGGCACTTCTATGCTATGCTAGCTCTGAAC ]
[-] EMBL CB657201 [ GTCAGTTGAAGGCCCATATAGTGGTGACCCCATGNAGGGTCCAAGGGTGCTTGCTGATATTGTTGAGGCCATTGTTGGTGCCGTCTATCTTGATTCCAAGCTTGATCTTGAAGTACTCCAGAAGGTTGCGAAGTTGCTGTGTGAGCCAATTATCACCAAAAAGGCATTACTAGAAGATCCTGAGTCCATGTTGAATGAGCTAGGGGGAGAACATAGGGAAGATTTGGAAATCAAAATATTGGCGTGGAGGAAGGTGGCAAACGTAGTCGATGATGGCCGGGAGCAAGCGATCACAACTAGTGGACTTGGCAACGGCTCAGAGGATGAGGTTGGAAAGCTTAGAACAATAAGAATAGAAGAAGCTTAACGAGCAGCACAGCAAGTTACAGTAAATTGGCGACCAGGAACCAATCAGTGAACTAGCAGCCCATATATAGTGGCTGGATCTGAACTTTTGTGGGTCAGGTATGGAACATATTCATGTATTGCGCAGGCACTTCTATGCTATGCTAGCTCTGAACATTGATGCCTGGAGGTTTGTTTCATGGCATGTTCACTGCTAGATAGTAGTAGCTGTGAAATCAATGTATGGCTATTGAAATTGATGCAGACCTGGTACTATTGATGTCTGGTACCCTGGTTATCAGGCCAAGCGTGTCCTAATCTTGTCGAGCGATGAACACTATAGTGTATTTTGTCTTATGTACA ATGGAGGTTTGTCAT ACTGAATCTGTGTTTGTACTCAACCAATGTATATGTAGAATACCATGTAAAGTAATATTATTAAAGAATGTGTGATGTTTGTTCAT ]
[-] EMBL CB658973 [ AGTTGAAGGCCCATATAGTGGTGACCCCATTGAGGGTCCAAGGGTGCTTGCTGATATTGTTGAGGCCATTGTTGGTGCCGTCTATCTTGATTCCAAGCTTGATCTTGAAGTACTCCAGAAGGTTGCGAAGTTGCTGTGTGAGCCAATTATCACCAAAAAGGCATTACTAGAAGATCCTGAGTCCATGTTGAATGAGCTAGGGGGAGAACATAGGGAAGATTTGGAAATCAAAATATTGGCGTGGAGGAAGGTGGCAAACGTAGTCGATGATGGCCGGGAGCAAGCGATCACAACTAGTGGACTTGGCAACGGCTCAGAGGATGAGGTTGGAAAGCTTAGAACAATAAGAATAGAAGAAGCTTAACGAGCAGCACAGCAAGTTACAGTAAATTGGCGACCAGGAACCAATCAGTGAACTAGCAGCCCATATATAGTGGCTGGATCTGAACTTTTGTGGGTCAGGTATGGAACATATTCATGTATTGCGCAGGCACTTCTATGCTATGCTAGCTCTGAACATTGATGCCTGGAGGTTTGTTTCATGGCATGTTCACTGCTAGATAGTAGTAGCTGTGAAATCAATGTATGGCTATTGAAATTGATGCAGACCTGGTACTATTGATGTCTGGTACCCTGGTTATCAGGCCAAGCGTGTCCTAATCTTGTCGAGCGATGAACACTATAGTGTATTTTGTCTTATGTACA ATGGAGGTTTGTCAT ACTGAATCTGTGTTTGTACTCAACCAATGTATATGTAGAATACCATGTAAAGTAATATTAGGAAAGAATGTGTGATGTTTGTTCAAAA ]
[+] EMBL BM038315 [ gccggacCCAGGAACCCATCAGTGAACTACCAGCCCATATATAGT GCTGGATCTGAACTTTTGTGGGTCAGGTATGGAACATATTCATGTATTGCGCAGGCACTTCTATGCTATGCTAGCTCTGAACATTGATGCCTGGAGGTTTGTTTCATGGCATGTTCACTGCTAGATAGTAGTAGCTGTGAAATCAATGTATGGCTATTGAAATTGATGCAGACCTGGTACTATTGATGTCTGGTACCCTGGTTATCAGGCCAAGCGTGTCCTAATCTTGTCGAGCGATGAACACTATAGTGTATTTTGTCTTATGTACANATGGAGGTTTGTCATCACTGAATCTGTGTTTGTACTCAACC ATGTATATGTAGAATACCATGTAAAGTAATATTATTAAAGAATGTGTGATGTTTGTTCATATGGACTTACTCTCAGTGTCCTAGATATGAAAGAGCATATAGCTTTTCAGGTGGGCTCAGCTATNCATNTCTCATGCCTTGCATGAAAAAAAA]
consensusID : consensus_12660#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 969 fasta sequence
[CTGCTGCGGTAGCTAGCTTGCTTGCCGTTCGTTCGTGTGTGTGTGCGTGTGCGTAAGCTTAAGAGGTTGATTGGCTAAGCTAGCAAGCCGGCCGCATGGCGACTTCCGGCGACGTCGAAGAGGTGCCGGAGCCGGGCATGGATCACCCGGCTGAGCCATGCATGGGCGTCGGCGGCGACCAGCTGGTGCCGACGACGGAGGAAATAAGCCTCCCGCTGGCGGCCGAGACGACGTCAGATCACCATGAAGCGGCACAGCTGGAGCAGTCCGCGGAGACGTCGACGTCAGAGTCGGAATCAGAGGAGGTGGCCGCCAAGACGACGTCCGATTCCAGTGAGGCGGCGGCGGTTATTCCCAAGCACGCCGCGGAGGGTTCGTCGACGGCGTCAGAGGAGGAGCAGGTAGCGAAGAAGGAGCTGAAGGAAGCCGAGGAGGACGATGGCCTGCAGGGCGAGAGCGCGCGGGAGAGGCTGAAGCGGCACAGGCGGGAGATGGCCGGGAGGGTGTGGGTGCCGGACATGTGGGGGCAGGAGAAGCTGCTCAAGGACTGGGTGGACTGCGCCGCCTTCGACCGCCCGCTCGTGCCGCCCGACCTGCTCACGGCGCGCCGGGCGCTCGTCGCCGAGTGCTGCGCGCGCCGCCCGGACCGGACGACGACGCCGCCCGGACCGGACGACGACGCCGCCCGCCAGATCCAGCCCTCTCCGGGTGCAAAAAAGCTGCTCCTGATTATCGAGCTTGATTACTAGCAGCGCTTCAATTCGCCTCCAGCTTCACTAGCCATATTAGCTAGCCGCGTGCATACGCCTTCTTTTTTTGCTCAAATAAGAGATATTACCCTTCTTGTTTCCGAGTTGTGAGGGTCCTTTTTTTTTCCTGTTCTAAACTTCTAATTCTGATGATAGTGTGAATTACATTTACTGATTTACACATATATGAGCTTTCCCTGCATAAAGAAAGGGTTTTGTC]
[+] EMBL AK108223 [CTGCTGCGGTAGCTAGCTTGCTTGCCGTTCGTTCGTGTGTGTGTGCGTGTGCGTAAGCTTAAGAGGTTGATTGGCTAAGCTAGCAAGCCGGCCGCATGGCGACTTCCGGCGACGTCGAAGAGGTGCCGGAGCCGGGCATGGATCACCCGGCTGAGCCATGCATGGGCGTCGGCGGCGACCAGCTGGTGCCGACGACGGAGGAAATAAGCCTCCCGCTGGCGGCCGAGACGACGTCAGATCACCATGAAGCGGCACAGCTGGAGCAGTCCGCGGAGACGTCGACGTCAGAGTCGGAATCAGAGGAGGTGGCCGCCAAGACGACGTCCGATTCCAGTGAGGCGGCGGCGGTTATTCCCAAGCACGCCGCGGAGGGTTCGTCGACGGCGTCAGAGGAGGAGCAGGTAGCGAAGAAGGAGCTGAAGGAAGCCGAGGAGGACGATGGCCTGCAGGGCGAGAGCGCGCGGGAGAGGCTGAAGCGGCACAGGCGGGAGATGGCCGGGAGGGTGTGGGTGCCGGACATGTGGGGGCAGGAGAAGCTGCTCAAGGACTGGGTGGACTGCGCCGCCTTCGACCGCCCGCTCGTGCCGCCCGACCTGCTCACGGCGCGCCGGGCGCTCGTCGCCGAGTGCTGCGCGCGCCGCCCGGACCGGACGACGACGCCGCCCGGACCGGACGACGACGCCGCCCGCCAGATCCAGCCCTCTCCGGGTGCAAAAAAGCTGCTCCTGATTATCGAGCTTGATTACTAGCAGCGCTTCAATTCGCCTCCAGCTTCACTAGCCATATTAGCTAGCCGCGTGCATACGCCTTCTTTTTTTGCTCAAATAAGAGATATTACCCTTCTTGTTTCCGAGTTGTGAGGGTCCTTTTTTTTTCCTGTTCTAAACTTCTAATTCTGATGATAGTGTGAATTACATTTACTGATTTACACATATATGAGCTTTCCCTGCATAAAGAAAGGGTTTTGTC]
consensusID : consensus_12660#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 784 fasta sequence
[AAACAAGTCGCTGCCGAAAGGCGCCCGCCGGCTAGCTACGCTAGTGGCAGTGCCCATCAATCCACATTCCAGCCCCTCATATACTCCAGTACTCCACATACGAACAATCGGTCGAAAGCTCTAACTCTAGCTTTGATCCATGCATATCTATCCATCCTTTCTTTGATCGGTCGCAACGCCCAGAAACTGATCGACGATGCAGCAGCAGCAGCATCCGGCGCCGGGCGCGGAGTTCGTGGCGGACCGGGACGCGGCGCGGGCGGAGGTGGAGCGTGCACTGGGCGGGTACAGCTTCCGCGACGGCGGCGCGTCCCGGTCCGCCACGAACTCCGCGCCCGGCGCCGGATGCTGCTGCTGCTGCATCGTCGATCAGTTTCTGGGCGTTGCGACCGATCAAAGAAAGGATGGATAGATATGCATGGATCAAAGCGGACATGTGGGGGCAGGAGAAGCTGCTCAAGGACTGGGTGGACTGCGCCGCCTTCGACCGCCCGCTCGTGCCGCCCGACCTGCTCACGGCGCGCCGGGCGCTCGTCGCCGAGTGCTGCGCGCGCCGCCCGGACCGGACGACGACGCCGCCCGGACCGGACGACGACGCCGCCCGCCAGATCCAGCCCTCTCCGGGTGCAAAAAAGCTGCTCCTGATTATCGAGCTTGATTACTAGCAGCGCTTCAATTCGCCTCCAGCTTCACTAGCCATATTAGCTAGCCGCGTGCATACGCCTTCTTTTTTTGCTNCAATAAGAGATATTACCCTTCTTGTTAAAANNNNNNNNNNNNNNNA]
[+] EMBL CA754227 [AAACAAGTCGCTGCCGAAAGGCGCCCGCCGGCTAGCTACGCTAGTGGCAGTGCCCATCAATCCACATTCCAGCCCCTCATATACTCCAGTACTCCACATACGAACAATCGGTCGAAAGCTCTAACTCTAGCTTTGATCCATGCATATCTATCCATCCTTTCTTTGATCGGTCGCAACGCCCAGAAACTGATCGACGATGCAGCAGCAGCAGCATCCGGCGCCGGGCGCGGAGTTCGTGGCGGACCGGGACGCGGCGCGGGCGGAGGTGGAGCGTGCACTGGGCGGGTACAGCTTCCGCGACGGCGGCGCGTCCCGGTCCGCCACGAACTCCGCGCCCGGCGCCGGATGCTGCTGCTGCTGCATCGTCGATCAGTTTCTGGGCGTTGCGACCGATCAAAGAAAGGATGGATAGATATGCATGGATCAAAGCGGACATGTGGGGGCAGGAGAAGCTGCTCAAGGACTGGGTGGACTGCGCCGCCTTCGACCGCCCGCTCGTGCCGCCCGACCTGCTCACGGCGCGCCGGGCGCTCGTCGCCGAGTGCTGCGCGCGCCGCCCGGACCGGACGACGACGCCGCCCGGACCGGACGACGACGCCGCCCGCCAGATCCAGCCCTCTCCGGGTGCAAAAAAGCTGCTCCTGATTATCGAGCTTGATTACTAGCAGCGCTTCAATTCGCCTCCAGCTTCACTAGCCATATTAGCTAGCCGCGTGCATACGCCTTCTTTTTTTGCTNCAATAAGAGATATTACCCTTCTTGTTAAAANNNNNNNNNNNNNNNA]
consensusID : consensus_12660#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 742 fasta sequence
[GAATCTTCTTATTCATTGTTAAACCTTACATTCAGGCATTTTGTAAAATTTCACTATGTCGACCTAGCTATATTCAACCATATGTAATGTAGGTCTGCTAGAGCGGAGTGAACGTTCAACCAATTGCTTAAGATACACTTAACACACCATGTAAAATTTCACTATGTCGACCTACATTCAACCATTGTTAAACCTTTTGGATGGTTCAGATAGCTGCTTGATTCGGTAAATACAAATTTTGAGTCGATGTCTTAGTTTTCCCTGTTCTTCTTTTCCTGCTGCATGAGGTTTCTTTGTGCCACGTGAGGCATCATCCTATGGGGCAAGTAAAATTTTTCTAACTACAGGTGAACTAGCAGCCCATATATAGTGGCTGGATCTGAACTTTTGTGGGTCAGGTATGGAACATATTCATGTATTGCGCAGGCACTTTTATGCTATGCTAGCTGTGAACATTGATGCCTGGAGGTTTGTTTCATGGCATGTTCACTGCTAGATAGTAGTAGCTGTGAAATCAATGTATGGGTATTGAAATTGATGCAGACTTGGTAATATTGATGTCTGGTCCCTTGGTTATCAGGCCAAGGGTGTCTTAATTTTGTCGAGCGATGAACACTATAGTGTATTTTGTCTTATGTACAATGGAGGTTGGGGAATGTGAATCTGTGTTTGTACTCAACTCAATGTATAGGTAGAATGCCATGTAAAGTAATATTATTATAGAAGGTGTGATTTTTGTTCA]
[-] EMBL CB684890 [GAATCTTCTTATTCATTGTTAAACCTTACATTCAGGCATTTTGTAAAATTTCACTATGTCGACCTAGCTATATTCAACCATATGTAATGTAGGTCTGCTAGAGCGGAGTGAACGTTCAACCAATTGCTTAAGATACACTTAACACACCATGTAAAATTTCACTATGTCGACCTACATTCAACCATTGTTAAACCTTTTGGATGGTTCAGATAGCTGCTTGATTCGGTAAATACAAATTTTGAGTCGATGTCTTAGTTTTCCCTGTTCTTCTTTTCCTGCTGCATGAGGTTTCTTTGTGCCACGTGAGGCATCATCCTATGGGGCAAGTAAAATTTTTCTAACTACAGGTGAACTAGCAGCCCATATATAGTGGCTGGATCTGAACTTTTGTGGGTCAGGTATGGAACATATTCATGTATTGCGCAGGCACTTTTATGCTATGCTAGCTGTGAACATTGATGCCTGGAGGTTTGTTTCATGGCATGTTCACTGCTAGATAGTAGTAGCTGTGAAATCAATGTATGGGTATTGAAATTGATGCAGACTTGGTAATATTGATGTCTGGTCCCTTGGTTATCAGGCCAAGGGTGTCTTAATTTTGTCGAGCGATGAACACTATAGTGTATTTTGTCTTATGTACAATGGAGGTTGGGGAATGTGAATCTGTGTTTGTACTCAACTCAATGTATAGGTAGAATGCCATGTAAAGTAATATTATTATAGAAGGTGTGATTTTTGTTCA]
consensusID : consensus_12660#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence
[ATGCCGGGAGGTTTTGGTCCCGGACATGTGGGCCAGGTAGAAGCTGCTCAAGGACTGGGTGTACTTCTCCGCCGTTCTGCCGCCCGCTCTGTCCGCCCGACCTGCTCACGGCGCTCCGGGCGCTCGTCGCCGAGTGCTGCGCGCTCCGCCCGGACCGGACGACGACGCCGCCCGCCAGATCCAGCTCTCTCCGGGGGCAAAAAAGCTGCTCCTGATTATCGAGCTTGATTACTAGCAGCGCTGTCAATTCGCCTCCAGCTTCACTAGCCATATTTAGCTACCCCGCGGTGCATACGCCTTCTTTTTTTGCTCAAATAAGAGATATTACCCTTCTTGTTTCCGAGTTGTGAAGGT]
[+] EMBL BI810527 [ATGCCGGGAGGTTTTGGTCCCGGACATGTGGGCCAGGTAGAAGCTGCTCAAGGACTGGGTGTACTTCTCCGCCGTTCTGCCGCCCGCTCTGTCCGCCCGACCTGCTCACGGCGCTCCGGGCGCTCGTCGCCGAGTGCTGCGCGCTCCGCCCGGACCGGACGACGACGCCGCCCGCCAGATCCAGCTCTCTCCGGGGGCAAAAAAGCTGCTCCTGATTATCGAGCTTGATTACTAGCAGCGCTGTCAATTCGCCTCCAGCTTCACTAGCCATATTTAGCTACCCCGCGGTGCATACGCCTTCTTTTTTTGCTCAAATAAGAGATATTACCCTTCTTGTTTCCGAGTTGTGAAGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12660#1 ------------------------------------------------------------
consensus_12660#4 ------------------------------------------------------------
consensus_12660#2 ------------------------------------------------------------
consensus_12660#0 GCTCTAACTCTAGCTTTGATCCATGCATATCTATCCATCCTTTCTTTGATCGGTCGCAAC 60
consensus_12660#3 ------------------------------------------------------------
consensus_12660#1 ------------------------------------------------------------
consensus_12660#4 ------------------------------------------------------------
consensus_12660#2 ------------------------------------------------------------
consensus_12660#0 GCCCAGAAACTGATCGACGATGCAGCAGCAGCAGCATCCGGCGCCGGGCGCGGAGTTCGT 120
consensus_12660#3 ------------------------------------------------------------
consensus_12660#1 ------------------------------------------------------------
consensus_12660#4 ------------------------------------------------------------
consensus_12660#2 ------------------------------------------------------------
consensus_12660#0 GGCGGACCGGGACGCGGCGCGGGCGGAGGTGGAGCGTGCACTGGGCGGGTACAGCTTCCG 180
consensus_12660#3 ------------------------------------------------------------
consensus_12660#1 ------------------------------------------------------------
consensus_12660#4 ------------------------------------------------------------
consensus_12660#2 ------------------------------------------------------------
consensus_12660#0 CGACGGCGGCGCGCTGCTGCTGGAGGACGCCCTGACGCACAGCGTGCACCCCAGGGACGA 240
consensus_12660#3 ------------------------------------------------------------
consensus_12660#1 ------------------------------------------------------------
consensus_12660#4 ------------------------------------------------------------
consensus_12660#2 ------------------------------------------------------------
consensus_12660#0 GGCCGGCGGGCGGGCCAGGCACCAGCGGCTCGAGTTCCTCGGCGACGCTGCGCTCGGCCT 300
consensus_12660#3 ------------------------------------------------------------
consensus_12660#1 ------------------------------------------------------------
consensus_12660#4 ------------------------------------------------------------
consensus_12660#2 ------------------------------------------------------------
consensus_12660#0 CGCCTTCGCCACCATCTTCTACCGGGACGACCCGGGCCTCGACCAGGGGGACCTCACGGT 360
consensus_12660#3 ------------------------------------------------------------
consensus_12660#1 ----------------------------------------------------------CT 2
consensus_12660#4 ------------------------------------------------------------
consensus_12660#2 ------------------------------------------------------------
consensus_12660#0 GCTCCGCTCCGCCAACGTCTCCACCCAGAAGCTCGCCCGCGTCGCCGTCCGCCGGCGCCT 420
consensus_12660#3 ------------------------------------------------------------
consensus_12660#1 GCTGCGGTAGCTAGCTTGCTTGCCGTTCGTTCGTGTGTGTGTGCGTGTGCGTAAGCTTAA 62
consensus_12660#4 ------------------------------------------------------------
consensus_12660#2 ------------------------------------------------------------
consensus_12660#0 CTATCCGCTGCTCCGGCGCTACAACTGCGCCCCTCAAGACCACGAAGTCAGCCGTTTTAC 480
consensus_12660#3 ------------------------------------------------------------
consensus_12660#1 GAGGTTGATTGGCTAAGCTAGCAAGCCG--GCCGCATGGCGACTTCCGGCGACGTCGAAG 120
consensus_12660#4 ------------------------------------------------------------
consensus_12660#2 ------------------AAACAAGTCGCTGCCGAAAGGCGCCCGCCGGCTA-GCTACGC 41
consensus_12660#0 CAAGTCAGTTGAAGGCCCATATAGTGGTGACCCCATTGAGGGTCCAAGGGTGCTTGCTGA 540
consensus_12660#3 ------------------------GAATCTTCTTATTCATTGTTAAACCTTACATTCAGG 36
consensus_12660#1 AGGTGCCGGAGCCGGGCATGGATCACCCGGCTGAGCCATGCATGGGCGTCGGCGGCGACC 180
consensus_12660#4 ------------------------------------------------------------
consensus_12660#2 TAGTGGCAGTGCC---CATCAATC-CACATTCCAGCCCCTCATATACTCCAGTACTCCAC 97
consensus_12660#0 TATTGTTGAGGCC----ATTGTTGGTGCCGTCTATCTTGATTCCAAGCTTGATCTTGAAG 596
consensus_12660#3 CATTTTGTAAAAT----TTCACTATGTCGACCTAGCTATATTCAACCATATGTAATGTAG 92
consensus_12660#1 AGCTGGTGCCGACGACGGAGGAAATAAGCCTCCCGCTGGCGGCCGAGACGACGTCAGATC 240
consensus_12660#4 ------------------------------------------------------------
consensus_12660#2 ATACGAACAATCGGTCGAAAGCTCTAA--CTCTAGCTT-TGATCCATGC-ATATCTATCC 153
consensus_12660#0 TACTCCAGAAGGTTGCGAAGTTGCTGTGTGAGCCAATTATCACCAAAAAGGCATTACTAG 656
consensus_12660#3 GTCTGCTAGA----GCGGAGTGAACGT-TCAACCAATTGCT--TAAGATACACTTAACAC 145
consensus_12660#1 ACCATGAAGCGGCACAGCTGGAGCAGTCCGCGGAGACGTCGACGTCAGAGTCGGAATCAG 300
consensus_12660#4 ------------------------------------------------------------
consensus_12660#2 ATCCTTTCTTTGATCGGTCGCAAC-GCCCAGAAACTGATCGACGATGCAGCAGCAGCAGC 212
consensus_12660#0 AAGATCCTGAGTCCATGTTGAATGAGCTAGGGGGAG-AACATAGGGAAGATTTGGAAATC 715
consensus_12660#3 ACCATGTAAAATTT-CACTATGTCGACCTACATTCA-ACCATTGTTAAACCTTTTGGATG 203
consensus_12660#1 AGGAGGTGGCCGCCAAGACGACGTCCGATTCCAGTGAGGCGGCGGCGGTTATTCCCAAGC 360
consensus_12660#4 ------------------------------------------------------------
consensus_12660#2 ATCCGGCGCCGGGCGCGGAGTTCGTGGCGGACCGGGACGCGGCGCGGGCGGAGGTGGAGC 272
consensus_12660#0 AAAATATTGGCGTGGAGGAAGGTGGCAAACGTAGTCGATGATGGCCGGGAGCAAGCGATC 775
consensus_12660#3 -----------GTTCAGATAGCTGCTTGATTCGGTAAATACAAATTTTGAGTCGATG-TC 251
consensus_12660#1 ACGC-CGCGGAGGGTTCGTCGACGGCGTCAGAGGAGGAGCA----GGTAGCGAAGAAGGA 415
consensus_12660#4 ------------------------------------------------------------
consensus_12660#2 GTGCACTGGGCGGGTACAGCTTCCGCGACGGCGGCGCGTCC----CGGTCCGCCACGAAC 328
consensus_12660#0 ACAACTAGTGGACTTGGCAACGGCTCAGAGGATGAGGTTGGAAAGCTTAGAACAATAAGA 835
consensus_12660#3 TTAGTTTTCCCTGTTCTTCTTTTCCTGCTGCATGAGGTTT-----CTTTGTGCCACGTGA 306
consensus_12660#1 GCTGAAGGAAGCCGAGGAGGACGATGGC-CTGCAGGGCGAGAGCGCGCGGGAGAGGCTGA 474
consensus_12660#4 ------------------------------------------------------------
consensus_12660#2 TCCGCGCCCGGCGCCGGATGCTGCTGCTGCTGCATCGTC-GATCAGTTTCTGGGCGTTGC 387
consensus_12660#0 ATAGAAGAAGCTTAACGAGCAGCACAGCAAGTTACAGTAAATTGGCGACCAGGAACCAAT 895
consensus_12660#3 --GGCATCATCCTATGGGGCA----AGTAAAATTTTTCTAACT---------------AC 345
consensus_12660#1 AGCGGCACAGGCGGGAGATGGCCGGGAGGGTGTGGGT---GCCGGACATGTGGGGGCAGG 531
consensus_12660#4 -----------------ATG-CCGGGAGGTTTTGG-T---CCCGGACATGTGGGCCAGGT 38
consensus_12660#2 GACCGATCAAAGAAAGGATGGATAGATATGCATGGATCAAAGCGGACATGTGGGGGCAGG 447
consensus_12660#0 CAGTGAACTAGCAGCCCATATATAG---TGGCTGGATCTGAACTTTTGTGGGTCAGGTAT 952
consensus_12660#3 AGGTGAACTAGCAGCCCATATATAG---TGGCTGGATCTGAACTTTTGTGGGTCAGGTAT 402
** * *** * * ** *
consensus_12660#1 AGAAGCTGCTCAAGGACTGGGTGG--ACTGCGCCGCC-TTCGACC---GCCCGCTCGTGC 585
consensus_12660#4 AGAAGCTGCTCAAGGACTGGGTGT--ACTTCTCCGCCGTTCTGCC---GCCCGCTCTGTC 93
consensus_12660#2 AGAAGCTGCTCAAGGACTGGGTGG--ACTGCGCCGCC-TTCGACC---GCCCGCTCGTGC 501
consensus_12660#0 GGAACATATTCATGTATTGCGCAGGCACTTCTATGCTATGCTAGCTCTGAACATTGATGC 1012
consensus_12660#3 GGAACATATTCATGTATTGCGCAGGCACTTTTATGCTATGCTAGCTGTGAACATTGATGC 462
*** * *** * * ** * *** ** * * * * * * *
consensus_12660#1 CGCCCGACCTGCT-CACGGCGCGCCGGGCGCTCGTCGCCGAGTGCTGCGCG--CGCCGCC 642
consensus_12660#4 CGCCCGACCTGCT-CACGGCGCTCCGGGCGCTCGTCGCCGAGTGCTGCGCG--CTCCGCC 150
consensus_12660#2 CGCCCGACCTGCT-CACGGCGCGCCGGGCGCTCGTCGCCGAGTGCTGCGCG--CGCCGCC 558
consensus_12660#0 CTGGAGGTTTGTTTCATGGCATGTTCACTGCTAGATAGTAGTAGCTGTGAAATCAATGTA 1072
consensus_12660#3 CTGGAGGTTTGTTTCATGGCATGTTCACTGCTAGATAGTAGTAGCTGTGAAATCAATGTA 522
* * ** * ** *** *** * **** * * *
consensus_12660#1 CGGAC-CGGACGACGACGCCGCCCGGACCGGACGACGACGCCGCCCGCCAGATCCAGCCC 701
consensus_12660#4 CGGAC-CGGACGACGACGCCGCCCG----------------------CCAGATCCAGCTC 187
consensus_12660#2 CGGAC-CGGACGACGACGCCGCCCGGACCGGACGACGACGCCGCCCGCCAGATCCAGCCC 617
consensus_12660#0 TGGCTATTGAAATTGATGCAGACCTGGTACTAT--------------TGATGTCTGGTAC 1118
consensus_12660#3 TGGGTATTGAAATTGATGCAGACTTGGTAATAT--------------TGATGTCTGGTCC 568
** ** ** ** * * * ** * *
consensus_12660#1 TCTCCGGGTGCAAAAAAGCTGCTCCTGAT--TATCGAGCT-TGATTACTAGCAGCGCT-T 757
consensus_12660#4 TCTCCGGGGGCAAAAAAGCTGCTCCTGAT--TATCGAGCT-TGATTACTAGCAGCGCTGT 244
consensus_12660#2 TCTCCGGGTGCAAAAAAGCTGCTCCTGAT--TATCGAGCT-TGATTACTAGCAGCGCT-T 673
consensus_12660#0 CCTGGTTATCAGGCCAAGCGTGTCCTAATCTTGTCGAGCGATGAACACTA-TAGTG---- 1173
consensus_12660#3 CTTGGTTATCAGGCCAAGGGTGTCTTAATTTTGTCGAGCGATGAACACTA-TAGTG---- 623
* *** ** * ** * ****** *** **** ** *
consensus_12660#1 CAATTCGCCTCCAGCTTCACTAGCCATATT-A--GCTAGCC-GCG--TGCATACGCCTTC 811
consensus_12660#4 CAATTCGCCTCCAGCTTCACTAGCCATATTTA--GCTACCCCGCGG-TGCATACGCCTTC 301
consensus_12660#2 CAATTCGCCTCCAGCTTCACTAGCCATATT-A--GCTAGCC-GCG--TGCATACGCCTTC 727
consensus_12660#0 TATTTTGTCTTATGTACAATGGAGGTTTGTCATACTGAATCTGTGTTTGTACTCAAC-CA 1232
consensus_12660#3 TATTTTGTCTTATGTACAATGGAGGTTGGGGAATGTGAATCTGTGTTTGTACTCAACTCA 683
* ** * ** * * * * * * * * ** * * *
consensus_12660#1 TTTTTTTGCTCAAATAAGAGATATTACCCTTCTTGTTTCCGAGTTGTGAGGGTCCTTTTT 871
consensus_12660#4 TTTTTTTGCTCAAATAAGAGATATTACCCTTCTTGTTTCCGAGTTGTGAAGGT------- 354
consensus_12660#2 TTTTTTTGCTNCAATAAGAGATATTACCCTTCTTGTTAAAANNNNNNNNNNNNNNNA--- 784
consensus_12660#0 ATGTATATGTAGAATACCATGTAAAGTAATATTATTAAAGAATGTGTGATGTTTGTTCAT 1292
consensus_12660#3 ATGTATAGGTAGAATGCCATGTAAAGTAATATTATTATAGAAGGTGTGATTTTTGTTCA- 742
* * * * *** * ** * * *
consensus_12660#1 TTTTCCTGTTCTAAACTTCTAATTCTGATGATAGTGTGAATTACATTTACTGATTTACAC 931
consensus_12660#4 ------------------------------------------------------------
consensus_12660#2 ------------------------------------------------------------
consensus_12660#0 AAGGACTTACTCTCAGTGTCCTAGATATGAAAGAGCATATAGCTTTTCAGGTGGGCTCAG 1352
consensus_12660#3 ------------------------------------------------------------
consensus_12660#1 ATATATGAGCTTTCCCTGCATAAAGAAAGGGTTTTGTC 969
consensus_12660#4 --------------------------------------
consensus_12660#2 --------------------------------------
consensus_12660#0 CTATNCATNTCTCATGCCTTGCATGAAAAAAAA----- 1385
consensus_12660#3 --------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||