|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12667#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1693 fasta sequence
[TGCCGTGTTCTACTTCACTAGGAAGCCACCAACCGCGGCGTTTGATCTCAGGTTTGATGCAGAGGCGCCGAAAGTGGCACTGCCTCAGGGCACGATGGCACCGGTGAATTCGTTCAACACATTGTTCCACACGCCAGCTTTCTGGGGTCTCATGATGCCAGTNTCAGTGAGCTCAATGGCATCAGATGTGATCCGTGGCTACTGGGCGCAACGGATCTTGTGGGAGATTGGTGGGTATGTGGCTTTCTATCCGCCGACTATTTACCGGAAGGATCATATTCAGGNATACCCGTTCGCTGAGGAGAAGGATCTGCATGTTAATGTGGGTCGGTTGATCAAGTTTCTGAATGAGTNGAGGTCAAACAAGAGAACTCTATTCGAGAGGATTCTTGATTTGAGCTATGCCATGGCTTNAGAAGGGTTCTGGACAGAGCAAGATGTGAGATTAACGGCTGCCTGGCTGCAGGACCTTCTTGCAGTGGGTTACC-GGCAGCCTCGGCTCATGTCATTGGAAATTGACAGGCAGC-GGGCAACCATTGGAGAGGGTGACATGAAGGAATTTGTACCCAAGAAGCTGCCATCTGTGCACTTGGGAGTTGATGAGATTGGTACAGTGAACTATGAGATTGGAAACCTGATTAAGTGGAGAAAGAACTTTGGAAATGTTGTGTTGATCATGCATGTTAGTGGGCCTGTGGATCGCACGGCACTCGAGTGGAGGCTGCTATATGGAAGGATTTTCAAGACGGTTATCATACTAGCTGAACAGAGCAACACAGAGCTTGCTGTTGAGCGCTGCGCGTTGTCACATGCATACAAGTTTCTGCCCAAGGTGTTTGCGAGATACGGTGGTGCTGATGGATTTCTC-TTCCTGCAAGATCACATGATTCTTAACTACTGGAACCTGCTGCAGGCTGACAAGGAAAAACTTTGGATAACCAACAAGATTGCACATTCTTGGGTTACTGTTCCATTGGAGAACAACAAAGAGGAATGGTTTGTAAAGCAAGGGTCAATGGTTAAGCAGGTCATTGGCAGTTCCCCAGTTCATTTCCAGACAAACTATAAAGAAAGCATGGGCGAAGATAAGATTGCATTCTGTGGCAGTGAGCTTTTTTACATACCACGTCAATTTGTTGAGGATTTTGGTGACCTTGTGGGACTTGTCGGCGATTTGGAATTGCACCACAAAGTTGCTGTCCCGATGTTCTTCCTGGCGATGGACTCGCCTAAAAATTTTGACTCTGATGCTCTGGCTGGAA-CAGTGTTCAGGAGCAACTTGGTGGGCAACGAGACTTTCTCAAGTATTTATACAGCTCACGCACCTGCTGTTTTCCCAGTGAAAGTACAGAACGAGATTGATTTTATAAAGCTTATTCGGGTTATGTCCACGGGAGACCCTCTTCTAATGGAGTTGGTATAAATACATATTCTGTAGTTGGAACGAAACTTCATCCTTGTGACAGTGTGGACAGAGTAGACAGCCATAGATTTCTGTTTTCAGGGGGTTCTCCATTGTTGTAATTTCATTTATTCTGTTTATTTTGTAGCTGTTTTTTTTCCTCTGCTGTTGTATACTGTTGTATCAATAGTGACATTGTTACTGAGGATCATCTTGGTCCAGCTGCCCTAGTGAAGGAAAGGACAGCTAAGAGTTTACTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL OSR3047A [TGCCGTGTTCTACTTCACTAGGAAGCCACCAACCGCGGCGTTTGATCTCAGGTTTGATGCAGAGGCGCCGAAAGTGGCACTGCCTCAGGGCACGATGGCACCGGTGAATTCGTTCAACACATTGTTCCACACGCCAGCTTTCTGGGGTCTCATGATGCCAGTNTCAGTGAGCTCAATGGCATCAGATGTGATCCGTGGCTACTGGGCGCAACGGATCTTGTGGGAGATTGGTGGGTATGTGGCTTTCTATCCGCCGACTATTTACCGGAAGGATCATATTCAGGNATACCCGTTCGCTGAGGAGAAGGATCTGCATGTTAATGTGGGTCGGTTGATCAAGTTTCTGAATGAGTNGAGGTCAAACAAGAGAACTCTATTCGAGAGGATTCTTGATTTGAGCTATGCCATGGCTTNAG ]
[+] EMBL AK059645 [ AGGCGCCGAAAGTGGCACTGCCTCAGGGCACGATGGCACCGGTGAATTCGTTCAACACATTGTTCCACACGCCAGCTTTCTGGGGTCTCATGATGCCAGTGTCAGTGAGCTCAATGGCATCAGATGTGATCCGTGGCTACTGGGCGCAACGGATCTTGTGGGAGATTGGTGGGTATGTGGCTTTCTATCCGCCGACTATTTACCGGAAGGATCATATTCAGGCATACCCGTTCGCTGAGGAGAAGGATCTGCATGTTAATGTGGGTCGGTTGATCAAGTTTCTGAATGAGTGGAGGTCAAACAAGAGAACTCTATTCGAGAGGATTCTTGATTTGAGCTATGCCATGGCTGAGGAAGGGTTCTGGACAGAGCAAGATGTGAGATTAACGGCTGCCTGGCTGCAGGACCTTCTTGCAGTGGGTTACC GGCAGCCTCGGCTCATGTCATTGGAAACTGACAGGCAGC GGGCAACCATTGGAGAGGGTGACATGAAGGAATTTGTACCCAAGAAGCTGCCATCTGTGCACTTGGGAGTTGATGAGATTGGTACAGTGAACTATGAGATTGGAAACCTGATTAAGTGGAGAAAGAACTTTGGAAATGTTGTGTTGATCATGCATGTTAGTGGGCCTGTGGATCGCACGGCACTCGAGTGGAGGCTGCTATATGGAAGGATTTTCAAGACGGTTATCATACTAGCTGAACAGAGCAACACAGAGCTTGCTGTTGAGCGCTGCGCGTTGTCACATGCATACAAGTTTCTGCCCAAGGTGTTTGCGAGATACGGTGGTGCTGATGGATTTCTC TTCCTGCAAGATCACATGATTCTTAACTACTGGAACCTGCTGCAGGCTGACAAGGAAAAACTTTGGATAACCAACAAGATTGCACATTCTTGGGTTACTGTTCCATTGGAGAACAACAAAGAGGAATGGTTTGTAAAGCAAGGGTCAATGGTTAAGCAGGTCATTGGCAGTTCCCCAGTTCATTTCCAGACAAACTATAAAGAAAGCATGGGCGAAGATAAGATTGCATTCTGTGGCAGTGAGCTTTTTTACATACCACGTCAATTTGTTGAGGATTTTGGTGACCTTGTGGGACTTGTCGGCGATTTGGAATTGCACCACAAAGTTGCTGTCCCGATGTTCTTCCTGGCGATGGACTCGCCTAAAAATTTTGACTCTGATGCTCTGGCTGGAA CAGTGTTCAGGAGCAACTTGGTGGGCAACGAGACTTTCTCAAGTATTTATACAGCTCACGCACCTGCTGTTTTCCCAGTGAAAGTACAGAACGAGATTGATTTTATAAAGCTTATTCGGGTTATGTCCACGGGAGACCCTCTTCTAATGGAGTTGGTATAAATACATATTCTGTAGTTGGAACGAAACTTCATCCTTGTGACAGTGTGGACAGAGTAGACAGCCTTAGATTTCTGTTTTCAGGGGGTTCTCCATTGTTGTAATTTCATTTATTCTGTTTATTTTGTAGCTGTTTTTTTTCCTCTGCTGTTGTATACTGTTGTATCAATAGTGACATTGTTACTGAGGATCATCTTGGTCCAGCTGCCCTAGTGAAGGAAAGGACAG ]
[+] EMBL AU183965 [ CAAGATGTGAGATTAACGGCTGCCTGGCTGCAGGACCTTCTTGCAGTGGGTTACCTGGCAGCCTCGGCTCATGTCATTGGAAATTGACAGGCAGCAGGGCAACCATTGGAGAGGGTGACATGAAGGAATTTGTACCCAAGAAGCTGCCATCTGTGCACTTGGGAGTTGATGAGATTGGTACAGTGAACTATGAGATTGGAAACCTGATTAAGTGGAGAAAGAACTTTGGAAATGTTGTGTTGATCATGCATGTTAGTGGGCCTGTGGATCGCACGGCACTCGAGTGGAGGCTGCTATATGGAAGGATTTTCAAGACGGTTATCATACTAGCTGAACAGAGCAACACAGAGCTTGCTGTTGAGCGCTGCGCGTTGTCACATGCATACAAGTTTCTGCCCAAGGTGTTTGCGAGATACGGTGGTGCTG ]
[+] EMBL OSR01881A [ AAGATGTGAGATTAACGGCTGCCTGGCTGCAGGACCTTCTTGCAGTGGGTTACC GGCAGCCTCGGCTCATGTCATTGGAAATTGACAGGCAGC GGGCAACCATTGGAGAGGGTGACATGAAGGAATTTGTACCCAAGAAGCTGCCATCTGTGCACTTGGGAGTTGATGAGATTGGTACAGTGAACTATGAGATTGGAAACCTGATTAAGTGGAGAAAGAACTTTGGAAATGTTGTGTTGATCATGCATGTTAGTGGGCCTGTGGATCGCACGGCACTCGAGTGGAGGCTGCTATATGGAAGGATTTTCAAGACGGTTATCATACTAGCTGAACAGNGCAACACAGAGCTTGCTGTTGAGCGCTGCG GTTGTCACATGCATACAAGTTTCTGCCCA ]
[+] EMBL AU225521 [ gccgcTTGGAAACCTGATTAAGTGGAGAAAGAACTTTGGAAATGTTGTGTTGATCATGCATGTTAGTGGGCCTGTGGATCGCACGGCACTCGAGTGGAGGCTGCTATATGGAAGGATTTTCAAGACGGTTATCATACTAGCTGAACAGAGCAACACAGAGCTTGCTGTTGAGCGCTGCGCGTTGTCACATGCATACAAGTTTCTGCCCAAGGTGTTTGCGAGATACGGTGGTGCTGATGGATTTCTCTTTCCTGCAAGATCACATGATTCTTAACTACTGGAACCTGCTGCAGGCTGACAAGGAAAAACTTTGGATAACCAACAAGATTGCACATTCTTGGGTTACTGTTCCATTGGAGAca ]
[+] EMBL AU173428 [ TGCACCACAAAGTTGCTGTCCCGATGTTCTTCCTGGCGATGGACTCGCCTAAAAATTTTGACTNTGATGCTCTGGCTGGAA CAGTGTTCAGGAGCAACTTGGTGGGCAACGAGACTTTNTCAAGTATTTATACAGCTCACGCACCTGCTGTTTTCCCAGTGAAAGTACAGAACGAGATTGATTTTATAAAGCTTATTCGGGTTATGTCCNCGGGAGACCCTCTTNTAATGGAGTTGGTATAAATACATATTCTGTAGTTGGAACGAAACTTCATCCTTGTGACAGTGTGGACAGAGTAGACAGCCATAGATTTNTGTTTTCAGGGGGTTNTCCATTGTTGTAATTTCATTTATTCTGTTTATTTTGTAGCTGTTTTTTTTCCTCTGCTGTTGTATACTGTTGTATCAATAGTGACATTGTTACTGAaaaaa ]
[+] EMBL AU031649 [ GACTCTGATGCTCTGGCTGGAACCAGTNTTCAGGAGCAACTTGGTGGGCAACGAGACTTTCTCAAGTATTTATACAG TCACGCACCTGCTGTTTNCCCAGTGAAAGTACAGAACGAGATTGATTTTATAAAGCTTATTCGGGTTATGTCCACGGGAGNCCCTCTTCTAATGGAGTTGGTATAAATACATATTCTGTAGTTGGAACGAAACTTCATCCTTGTGACAGTGTGGACAGAGTAGACANCCATAGATTTCTGTTTTCAGGGGGTTCTCCATTGTTGTAATTTCATTTATTCTGTTTATTTTGTAGCTGTTTTTTTTCCTCTGCTGTTGTATACTGTTGTATCAATAGTGACATTGTTACTGAGGATCATCTTGGTCCAGCTGCCCTAGTGAAGGAAAGGACAGCTAAGAGTTTACTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_12667#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 408 fasta sequence
[AACTATGAGATTGGAAACCTGATTAAGTGGAGAAAGAACTTTGGAAATGTTGTGTTGATCATGCATGTTAGTGGGCCTGTGGATCGCACGGCACTCGAGTGGAGGCTGCTATATGGAAGGATTTTCAAGACGGTTATCATACTAGCTGAACAGAGCAACACAGAGCTTGCTGTTGAGCGCTGCGCG-TTGTCACATGCATACAAGTTTCTGCCCAAGGTGTTTGCGAGATACGGTGGTGCTGATGGATTTCTCTTCCTGCAAGATCACATGATTCTTAACTACTGGAACCTGTTGCAGGCTGACAAGGAAAAACTTTGGATAACCAACAAGGTTTGTAGGCTTCATGTATTTGATATTAATCAATTCACATGATACGGTATTATCCATAACATACTTTCTCATACTGCA]
[+] EMBL OSS3504A [AACTATGAGATTGGAAACCTGATTAAGTGGAGAAAGAACTTTGGAAATGTTGTGTTGATCATGCATGTTAGTGGGCCTGTGGATCGCACGGCACTCGAGTGGAGGCTGCTATATGGAAGGATTTTCAAGACGGTTATCATACTAGCTGAACAGAGCAACACAGAGCTTGCTGTTGAGCGCTGCGCG TTGTCACATGCATACAAGTTTCTGCCCAAGGTGTTTGCGAGATACGGTGGTGCTGATGGATTTCTCTTCCTGCAAGATCACATGATTCTTAACTACTGGAACCTGTTGCAGGCTGACAAGGAAAAACTTTGGATAACCAACAAGGTTTGTAGGCTTCATGTATTTGATATTAATCAATTCACATGATACGGTATTATCCATAACATACTTTCTCATACTGCA]
[+] EMBL AU070556 [AACTATGAGATTGGAAACCTGATTAAGTGGAGAAAGAACTTTGGAAATGTTGTGTTGATCATGCATGTTAGTGGGCCTGTGGATCGCACGGCACTCGAGTGGAGGCTGCTATATGGAAGGATTTTCAAGACGGTTATCATACTAGCTGAACAGAGCAACACAGAGCTTGCTGTTGAGCGCTGCGCG TTGTCACATGCATACAAGTTTCTGCCCAAGGTGTTTGCGAGATACGGTGGTGCTGATGGATTTCTCTTCCTGCAAGATCACATGATTCTTAACTACTGGAACCTGTTGCAGGCTGACAAGGGAAAAC TTGGATAACCAACAAGG TTGTAAGCTTCATGTATTTGATATTAATCCATTCACATGATAC GTATTATCCATAACATACTTTCTCA ]
[+] EMBL OSS2949A [AACTATGAGATTGGAAACCTGATTAAGTGGAGAAAGAACTTTGGAAATGTTGTGTTGATCATGCATGTTAGTGGGCCTGTGGATCGCACGGCACTCGAGTGGAGGCTGCTATATGGAAGGATTTTCAAGACGGTTATCATACTAGCTGAACAGAGCAACACAGAGCTTGCTGTTGAGCGCTGCGCG TTGTCACATGCATACAAGTTTCTGCCCAAGGTGTTTGCGAGATACGGTGGTGCTGATGGATTTCTCTTCCTGCAAGATCACATGATTCTTAACTACTGGAACCTGTTGCAGGCTGACAAGGAAAAACTTTGGATAACCACCAAGGTTTGTAGGCTTCATGTATTTGATATTAATCAATTCAC ]
[+] EMBL OSS2835A [AACTATGAGATTGGAAACCTGATTAAGTGGAGAAAGAACTTTGGAAATGTTGTNTTGATCATGCATGTTAGTGGGCCTGTGGNTCGCACGGCACTCGAGTGGAGGCTGCTATATGGAAGGNTTTTCAAGACGGTTATCATACTAGCTGAACAGAGCANCACAGAGCTTGCTGTTGAGCGCTGCGCGTTTGTCACATGCATACAAGTTTCTGCCCAAGGTGTTTGCGAGATACGGTGGTGCTt ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12667#0 TGCCGTGTTCTACTTCACTAGGAAGCCACCAACCGCGGCGTTTGATCTCAGGTTTGATGC 60
consensus_12667#1 ------------------------------------------------------------
consensus_12667#0 AGAGGCGCCGAAAGTGGCACTGCCTCAGGGCACGATGGCACCGGTGAATTCGTTCAACAC 120
consensus_12667#1 ------------------------------------------------------------
consensus_12667#0 ATTGTTCCACACGCCAGCTTTCTGGGGTCTCATGATGCCAGTNTCAGTGAGCTCAATGGC 180
consensus_12667#1 ------------------------------------------------------------
consensus_12667#0 ATCAGATGTGATCCGTGGCTACTGGGCGCAACGGATCTTGTGGGAGATTGGTGGGTATGT 240
consensus_12667#1 ------------------------------------------------------------
consensus_12667#0 GGCTTTCTATCCGCCGACTATTTACCGGAAGGATCATATTCAGGNATACCCGTTCGCTGA 300
consensus_12667#1 ------------------------------------------------------------
consensus_12667#0 GGAGAAGGATCTGCATGTTAATGTGGGTCGGTTGATCAAGTTTCTGAATGAGTNGAGGTC 360
consensus_12667#1 ------------------------------------------------------------
consensus_12667#0 AAACAAGAGAACTCTATTCGAGAGGATTCTTGATTTGAGCTATGCCATGGCTTNAGAAGG 420
consensus_12667#1 ------------------------------------------------------------
consensus_12667#0 GTTCTGGACAGAGCAAGATGTGAGATTAACGGCTGCCTGGCTGCAGGACCTTCTTGCAGT 480
consensus_12667#1 ------------------------------------------------------------
consensus_12667#0 GGGTTACCGGCAGCCTCGGCTCATGTCATTGGAAATTGACAGGCAGCGGGCAACCATTGG 540
consensus_12667#1 ------------------------------------------------------------
consensus_12667#0 AGAGGGTGACATGAAGGAATTTGTACCCAAGAAGCTGCCATCTGTGCACTTGGGAGTTGA 600
consensus_12667#1 ------------------------------------------------------------
consensus_12667#0 TGAGATTGGTACAGTGAACTATGAGATTGGAAACCTGATTAAGTGGAGAAAGAACTTTGG 660
consensus_12667#1 ----------------AACTATGAGATTGGAAACCTGATTAAGTGGAGAAAGAACTTTGG 44
********************************************
consensus_12667#0 AAATGTTGTGTTGATCATGCATGTTAGTGGGCCTGTGGATCGCACGGCACTCGAGTGGAG 720
consensus_12667#1 AAATGTTGTGTTGATCATGCATGTTAGTGGGCCTGTGGATCGCACGGCACTCGAGTGGAG 104
************************************************************
consensus_12667#0 GCTGCTATATGGAAGGATTTTCAAGACGGTTATCATACTAGCTGAACAGAGCAACACAGA 780
consensus_12667#1 GCTGCTATATGGAAGGATTTTCAAGACGGTTATCATACTAGCTGAACAGAGCAACACAGA 164
************************************************************
consensus_12667#0 GCTTGCTGTTGAGCGCTGCGCGTTGTCACATGCATACAAGTTTCTGCCCAAGGTGTTTGC 840
consensus_12667#1 GCTTGCTGTTGAGCGCTGCGCGTTGTCACATGCATACAAGTTTCTGCCCAAGGTGTTTGC 224
************************************************************
consensus_12667#0 GAGATACGGTGGTGCTGATGGATTTCTCTTCCTGCAAGATCACATGATTCTTAACTACTG 900
consensus_12667#1 GAGATACGGTGGTGCTGATGGATTTCTCTTCCTGCAAGATCACATGATTCTTAACTACTG 284
************************************************************
consensus_12667#0 GAACCTGCTGCAGGCTGACAAGGAAAAACTTTGGATAACCAACAAGATT-GCACATTCTT 959
consensus_12667#1 GAACCTGTTGCAGGCTGACAAGGAAAAACTTTGGATAACCAACAAGGTTTGTAGGCTTCA 344
******* ************************************** ** * * *
consensus_12667#0 GGGTTACTGTTCCATTGGAGAACAACAAAGAGGAATGGTTTGTAAAGCAAGGGTCAATGG 1019
consensus_12667#1 TGTATTTGATATTAATCAATTCACATGATACGGTATTATCCATAACATACTTTCTCATAC 404
* * * * * * * * ** ** * *** * **
consensus_12667#0 TTAAGCAGGTCATTGGCAGTTCCCCAGTTCATTTCCAGACAAACTATAAAGAAAGCATGG 1079
consensus_12667#1 TGCA-------------------------------------------------------- 408
* *
consensus_12667#0 GCGAAGATAAGATTGCATTCTGTGGCAGTGAGCTTTTTTACATACCACGTCAATTTGTTG 1139
consensus_12667#1 ------------------------------------------------------------
consensus_12667#0 AGGATTTTGGTGACCTTGTGGGACTTGTCGGCGATTTGGAATTGCACCACAAAGTTGCTG 1199
consensus_12667#1 ------------------------------------------------------------
consensus_12667#0 TCCCGATGTTCTTCCTGGCGATGGACTCGCCTAAAAATTTTGACTCTGATGCTCTGGCTG 1259
consensus_12667#1 ------------------------------------------------------------
consensus_12667#0 GAACAGTGTTCAGGAGCAACTTGGTGGGCAACGAGACTTTCTCAAGTATTTATACAGCTC 1319
consensus_12667#1 ------------------------------------------------------------
consensus_12667#0 ACGCACCTGCTGTTTTCCCAGTGAAAGTACAGAACGAGATTGATTTTATAAAGCTTATTC 1379
consensus_12667#1 ------------------------------------------------------------
consensus_12667#0 GGGTTATGTCCACGGGAGACCCTCTTCTAATGGAGTTGGTATAAATACATATTCTGTAGT 1439
consensus_12667#1 ------------------------------------------------------------
consensus_12667#0 TGGAACGAAACTTCATCCTTGTGACAGTGTGGACAGAGTAGACAGCCATAGATTTCTGTT 1499
consensus_12667#1 ------------------------------------------------------------
consensus_12667#0 TTCAGGGGGTTCTCCATTGTTGTAATTTCATTTATTCTGTTTATTTTGTAGCTGTTTTTT 1559
consensus_12667#1 ------------------------------------------------------------
consensus_12667#0 TTCCTCTGCTGTTGTATACTGTTGTATCAATAGTGACATTGTTACTGAGGATCATCTTGG 1619
consensus_12667#1 ------------------------------------------------------------
consensus_12667#0 TCCAGCTGCCCTAGTGAAGGAAAGGACAGCTAAGAGTTTACTGAGAAAAAAAAAAAAAAA 1679
consensus_12667#1 ------------------------------------------------------------
consensus_12667#0 AAAAAAAAAAAAAA 1693
consensus_12667#1 --------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||