cluster # 1267

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Oryza sativa
cluster # 1267 cluster # 1267 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1267#0 length = 705 sequences # 1

consensus_1267#1 length = 273 sequences # 1

consensusID : consensus_1267#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 705
fasta sequence

                              [CGGCGCCGCGATGATAAAAGGCGAGAGAAATTTACCCACGAGTCGCTCGCGCGGTGACTGACACACCGTGGCGATGACACACGCCGAAAGGAAAGCTTGGCCGCGGCGCGGGGGCATTTTCGGGAGGAGACACGACCACGACCCCACGAGGGGATCGAAAAGTTGCGGAGCTTTTATTTAACCGGCCGGTTTGTGCCATTCTCGCCACTGTCCTAACCTGCACTTCGCTCTCTACTCCTCTCGCTCTCGGTCATGGGTGGTGGTGCGGCGGCGAGCAGGGTGTCGTCGGCCATGGCCGTGGCGGTGGCGGCGGCGGCGGCGTTGGTGGTGATGTGGGCGGGGACGGCGACGGCGGCGGCGGCCGTGTACGAGGTGGGCGACAAGACCGGGTGGACCATCATGGGCAGCCCCAACTACACAGCCTGGGCCGCCTCCAAGAAGTTCCATCTCGGCGACACCGTCGGTACGTACGTTTCGTGGCGAGTTTATCCCTCTCGCTCACGCGTTCTCCGCTCCTCCTGCTGCATTCCGGCGTTTTATCTCCTCAGAAACATTGGTGCGAACGACACACGTTTGTAGTTTTGTTGCTTGAACATGAATCTTGCCATGTGCAAGACTGCAAGTGCAAGTTCGTTGTTGAGACAAAATCTAGTAAGTAGTAGCCTTTTATCAGACGAATCAGTCACAGAGAAGAAGGGAAAAGAA]

[+] EMBL AK108722             [CGGCGCCGCGATGATAAAAGGCGAGAGAAATTTACCCACGAGTCGCTCGCGCGGTGACTGACACACCGTGGCGATGACACACGCCGAAAGGAAAGCTTGGCCGCGGCGCGGGGGCATTTTCGGGAGGAGACACGACCACGACCCCACGAGGGGATCGAAAAGTTGCGGAGCTTTTATTTAACCGGCCGGTTTGTGCCATTCTCGCCACTGTCCTAACCTGCACTTCGCTCTCTACTCCTCTCGCTCTCGGTCATGGGTGGTGGTGCGGCGGCGAGCAGGGTGTCGTCGGCCATGGCCGTGGCGGTGGCGGCGGCGGCGGCGTTGGTGGTGATGTGGGCGGGGACGGCGACGGCGGCGGCGGCCGTGTACGAGGTGGGCGACAAGACCGGGTGGACCATCATGGGCAGCCCCAACTACACAGCCTGGGCCGCCTCCAAGAAGTTCCATCTCGGCGACACCGTCGGTACGTACGTTTCGTGGCGAGTTTATCCCTCTCGCTCACGCGTTCTCCGCTCCTCCTGCTGCATTCCGGCGTTTTATCTCCTCAGAAACATTGGTGCGAACGACACACGTTTGTAGTTTTGTTGCTTGAACATGAATCTTGCCATGTGCAAGACTGCAAGTGCAAGTTCGTTGTTGAGACAAAATCTAGTAAGTAGTAGCCTTTTATCAGACGAATCAGTCACAGAGAAGAAGGGAAAAGAA]




>consensus_1267#0
CGGCGCCGCGATGATAAAAGGCGAGAGAAATTTACCCACGAGTCGCTCGCGCGGTGACTG
ACACACCGTGGCGATGACACACGCCGAAAGGAAAGCTTGGCCGCGGCGCGGGGGCATTTT
CGGGAGGAGACACGACCACGACCCCACGAGGGGATCGAAAAGTTGCGGAGCTTTTATTTA
ACCGGCCGGTTTGTGCCATTCTCGCCACTGTCCTAACCTGCACTTCGCTCTCTACTCCTC
TCGCTCTCGGTCATGGGTGGTGGTGCGGCGGCGAGCAGGGTGTCGTCGGCCATGGCCGTG
GCGGTGGCGGCGGCGGCGGCGTTGGTGGTGATGTGGGCGGGGACGGCGACGGCGGCGGCG
GCCGTGTACGAGGTGGGCGACAAGACCGGGTGGACCATCATGGGCAGCCCCAACTACACA
GCCTGGGCCGCCTCCAAGAAGTTCCATCTCGGCGACACCGTCGGTACGTACGTTTCGTGG
CGAGTTTATCCCTCTCGCTCACGCGTTCTCCGCTCCTCCTGCTGCATTCCGGCGTTTTAT
CTCCTCAGAAACATTGGTGCGAACGACACACGTTTGTAGTTTTGTTGCTTGAACATGAAT
CTTGCCATGTGCAAGACTGCAAGTGCAAGTTCGTTGTTGAGACAAAATCTAGTAAGTAGT
AGCCTTTTATCAGACGAATCAGTCACAGAGAAGAAGGGAAAAGAA

consensusID : consensus_1267#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence

                              [CGAGCTTCGCTCTCTACTCCTCTCGCTCTCGGTCATGGGTGGTGGTGCGGCGGCGAGCAGGGTGTCGTCGGCCATGGCCGTGGCGGCGGCGGCGTTGGTGGTGATGTGGGCGGGGACGGCGGCGGCGGCGGCGGCGGCCGTGTACGAGGTGGGCGACAAGACCGGGTGGACCATCTTGGGCAACCCCAACTACACAGCCTGGGCCGCCTCCAAGAAGTTCCATCTCGGCGACACCGTCGTGTTCACGGTACAACAAGSAGGCTCCACAACGGT]

[+] EMBL AA752388             [CGAGCTTCGCTCTCTACTCCTCTCGCTCTCGGTCATGGGTGGTGGTGCGGCGGCGAGCAGGGTGTCGTCGGCCATGGCCGTGGCGGCGGCGGCGTTGGTGGTGATGTGGGCGGGGACGGCGGCGGCGGCGGCGGCGGCCGTGTACGAGGTGGGCGACAAGACCGGGTGGACCATCTTGGGCAACCCCAACTACACAGCCTGGGCCGCCTCCAAGAAGTTCCATCTCGGCGACACCGTCGTGTTCACGGTACAACAAGSAGGCTCCACAACGGT]




>consensus_1267#1
CGAGCTTCGCTCTCTACTCCTCTCGCTCTCGGTCATGGGTGGTGGTGCGGCGGCGAGCAG
GGTGTCGTCGGCCATGGCCGTGGCGGCGGCGGCGTTGGTGGTGATGTGGGCGGGGACGGC
GGCGGCGGCGGCGGCGGCCGTGTACGAGGTGGGCGACAAGACCGGGTGGACCATCTTGGG
CAACCCCAACTACACAGCCTGGGCCGCCTCCAAGAAGTTCCATCTCGGCGACACCGTCGT
GTTCACGGTACAACAAGSAGGCTCCACAACGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1267#0      CGGCGCCGCGATGATAAAAGGCGAGAGAAATTTACCCACGAGTCGCTCGCGCGGTGACTG 60
consensus_1267#1      ------------------------------------------------------------
                                                                                  

consensus_1267#0      ACACACCGTGGCGATGACACACGCCGAAAGGAAAGCTTGGCCGCGGCGCGGGGGCATTTT 120
consensus_1267#1      ------------------------------------------------------------
                                                                                  

consensus_1267#0      CGGGAGGAGACACGACCACGACCCCACGAGGGGATCGAAAAGTTGCGGAGCTTTTATTTA 180
consensus_1267#1      ------------------------------------------------------------
                                                                                  

consensus_1267#0      ACCGGCCGGTTTGTGCCATTCTCGCCACTGTCCTAACCTGCACTTCGCTCTCTACTCCTC 240
consensus_1267#1      --------------------------------------CGAGCTTCGCTCTCTACTCCTC 22
                                                             *  ******************

consensus_1267#0      TCGCTCTCGGTCATGGGTGGTGGTGCGGCGGCGAGCAGGGTGTCGTCGGCCATGGCCGTG 300
consensus_1267#1      TCGCTCTCGGTCATGGGTGGTGGTGCGGCGGCGAGCAGGGTGTCGTCGGCCATGGCCGT- 81
                      *********************************************************** 

consensus_1267#0      GCGGTGGCGGCGGCGGCGGCGTTGGTGGTGATGTGGGCGGGGACGGCGACGGCGGCGGCG 360
consensus_1267#1      --------GGCGGCGGCGGCGTTGGTGGTGATGTGGGCGGGGACGGCGGCGGCGGCGGCG 133
                              **************************************** ***********

consensus_1267#0      GC---CGTGTACGAGGTGGGCGACAAGACCGGGTGGACCATCATGGGCAGCCCCAACTAC 417
consensus_1267#1      GCGGCCGTGTACGAGGTGGGCGACAAGACCGGGTGGACCATCTTGGGCAACCCCAACTAC 193
                      **   ************************************* ****** **********

consensus_1267#0      ACAGCCTGGGCCGCCTCCAAGAAGTTCCATCTCGGCGACACCGTCGGTACGTACGTTTCG 477
consensus_1267#1      ACAGCCTGGGCCGCCTCCAAGAAGTTCCATCTCGGCGACACCGTCG---TGTTCACGGTA 250
                      **********************************************    ** *      

consensus_1267#0      TGGCGAGTTTATCCCTCT-CGCTCACGCGTTCTCCGCTCCTCCTGCTGCATTCCGGCGTT 536
consensus_1267#1      CAACAAGSAGGCTCCACAACGGT------------------------------------- 273
                         * **      ** *  ** *                                     

consensus_1267#0      TTATCTCCTCAGAAACATTGGTGCGAACGACACACGTTTGTAGTTTTGTTGCTTGAACAT 596
consensus_1267#1      ------------------------------------------------------------
                                                                                  

consensus_1267#0      GAATCTTGCCATGTGCAAGACTGCAAGTGCAAGTTCGTTGTTGAGACAAAATCTAGTAAG 656
consensus_1267#1      ------------------------------------------------------------
                                                                                  

consensus_1267#0      TAGTAGCCTTTTATCAGACGAATCAGTCACAGAGAAGAAGGGAAAAGAA 705
consensus_1267#1      -------------------------------------------------