These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12671#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1486 fasta sequence [AATCTACCTGGAAGAACAAACTGCTCGCCCCCGCGTCGCCCACGCGCGGGCGACACGGGGGGAAACCCTAGCGCCGCCTCCGCCACTCTCTCCTCCTCTCCCTCCCCTCGCCGCTGCCGGAACGCGCCGCCGGAGAACCGCGCGGCCAGCCGGGATGGCGGCGGCGAGGCCAACCCCCGACGGCGCCCCGTCTCCGCGCGTGGATGGCGGGCCGGCGCGTGGTGCAAGGCTGACGACGCGGCGTGGAGACGGTGGATCCGGCGCCGCTGCGGCCGGATCTGGCCTCCCCGCGGTTGGATCCGGCGGATCCACGCCGGATCTGGCCGGAGGCGGCGGCGGCTAGCGGCTGGTGGCTGGTGGCTGGCGGCGACGACGAGAGCCGGAGGCTGGTGGCTGGCGGCCGCTGGCGAAGGAGGCCGGTGCATGCAGAGGATGCAGTGGCGACGGCGAGGCCACGGTGGCGGAGGCGGTGGAGGATGGCGCGGGGAGACGCGGCTGGAGGCCGACGCATGCGGAGGCCGCGGACGGCGATGCGACTGGAGGCTGCGGAGGCCGGCGCACATGGAGGCGCGGCTGGAGGCCGGCGTGCGTGGAGGCCGTGGTGGCGGCCGCAGCGGAGGCTCGGCCGATGACGGCGGAGGGCGACGTGGCACAGCCGGCGACAGGGGACGGCTACAAGGCGCGACGGATCGGCGGTGGTGAAGCCCGTCGGCGGTGGTGACGGTGAGGCGATGGCTGCGGTGAGGAGGACGGAGGCGACGGCGATGCGACCAAGCACCCGTTGACACGGCGGTTTGATCGAGGCGGCGATGACGGTCATGCTGTGAGGGGGGTGTTGAAGCCTGCGGCGAGCTTCCATCCAGGCGTCTGCCTTCTTGCGGTGGCGGCTTGCCGCCGAAAGATGGCCACGCTGGACGGGCGAGTGCGGGGAGAGGGGATCCATTCTTCTCTCTCACCTTCTCCCTCTCCAACCCAACCACGTGGATGGACGTGAAGCGCGGTGAAGGTTGAGACTCTTCTTTGATGGCCGGACGGTGGCGAGGCGTCGGCGCGGTGGCTACGTGTCAAAGGGAATTAGATGGTGGTTCTGCTAAACTGGCATGCACTTTTTGACGCGGGAGAGTAGAACAACAGGCGAAAGCCTAGCTTTCGGGCCGGCAACGGCGACGCCTACGGGCGCCGTTTTCCCCTTGGGGCATTGTCGTGTTTTCTATTTTTCCCAGTGGGTTCTTCAGGTGAAAACCTCGTCCTGGTTACCTAGGACGGACGGTGGCGGCGCTTTTGTCGTCGTTTTCCTTCTTGGAGGCATCGTTTAGAAGTCCTATTCCTTTGGGGTGTTGTGTGCTTGTTTTGTTTTAAACAGTAGGATCAGACGTAGACGCGTGGTGTGGTTGTATATTTTCTTTTTCCTGACTACAGTCTCCCAGGACTATAGGCTTGTATTTTATTCCTTCTTTATCAATAGAAACGTCGCACTATCTTGTGC] [+] EMBL AK107450 [AATCTACCTGGAAGAACAAACTGCTCGCCCCCGCGTCGCCCACGCGCGGGCGACACGGGGGGAAACCCTAGCGCCGCCTCCGCCACTCTCTCCTCCTCTCCCTCCCCTCGCCGCTGCCGGAACGCGCCGCCGGAGAACCGCGCGGCCAGCCGGGATGGCGGCGGCGAGGCCAACCCCCGACGGCGCCCCGTCTCCGCGCGTGGATGGCGGGCCGGCGCGTGGTGCAAGGCTGACGACGCGGCGTGGAGACGGTGGATCCGGCGCCGCTGCGGCCGGATCTGGCCTCCCCGCGGTTGGATCCGGCGGATCCACGCCGGATCTGGCCGGAGGCGGCGGCGGCTAGCGGCTGGTGGCTGGTGGCTGGCGGCGACGACGAGAGCCGGAGGCTGGTGGCTGGCGGCCGCTGGCGAAGGAGGCCGGTGCATGCAGAGGATGCAGTGGCGACGGCGAGGCCACGGTGGCGGAGGCGGTGGAGGATGGCGCGGGGAGACGCGGCTGGAGGCCGACGCATGCGGAGGCCGCGGACGGCGATGCGACTGGAGGCTGCGGAGGCCGGCGCACATGGAGGCGCGGCTGGAGGCCGGCGTGCGTGGAGGCCGTGGTGGCGGCCGCAGCGGAGGCTCGGCCGATGACGGCGGAGGGCGACGTGGCACAGCCGGCGACAGGGGACGGCTACAAGGCGCGACGGATCGGCGGTGGTGAAGCCCGTCGGCGGTGGTGACGGTGAGGCGATGGCTGCGGTGAGGAGGACGGAGGCGACGGCGATGCGACCAAGCACCCGTTGACACGGCGGTTTGATCGAGGCGGCGATGACGGTCATGCTGTGAGGGGGGTGTTGAAGCCTGCGGCGAGCTTCCATCCAGGCGTCTGCCTTCTTGCGGTGGCGGCTTGCCGCCGAAAGATGGCCACGCTGGACGGGCGAGTGCGGGGAGAGGGGATCCATTCTTCTCTCTCACCTTCTCCCTCTCCAACCCAACCACGTGGATGGACGTGAAGCGCGGTGAAGGTTGAGACTCTTCTTTGATGGCCGGACGGTGGCGAGGCGTCGGCGCGGTGGCTACGTGTCAAAGGGAATTAGATGGTGGTTCTGCTAAACTGGCATGCACTTTTTGACGCGGGAGAGTAGAACAACAGGCGAAAGCCTAGCTTTCGGGCCGGCAACGGCGACGCCTACGGGCGCCGTTTTCCCCTTGGGGCATTGTCGTGTTTTCTATTTTTCCCAGTGGGTTCTTCAGGTGAAAACCTCGTCCTGGTTACCTAGGACGGACGGTGGCGGCGCTTTTGTCGTCGTTTTCCTTCTTGGAGGCATCGTTTAGAAGTCCTATTCCTTTGGGGTGTTGTGTGCTTGTTTTGTTTTAAACAGTAGGATCAGACGTAGACGCGTGGTGTGGTTGTATATTTTCTTTTTCCTGACTACAGTCTCCCAGGACTATAGGCTTGTATTTTATTCCTTCTTTATCAATAGAAACGTCGCACTATCTTGTGC] consensusID : consensus_12671#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 912 fasta sequence [AATTAACTTGCATGCTCTCCAAGAAACTGATGCATCACAGTAACACACAGCCACCAATTCACATGTTTCCAGTTCATTTTTCATCAAATACACACTATTACTATCCTATCTACAGAAAGGCATCTCTATCTCTAACAATTTGCTGCTGCTATCTTGGCAGGAACCCGTACTGCGAGACCGGAACCTCGAACGCCATCATCTTCTCCCCTCGAGCAAACCCGTTGCGGTCGTAGGACGAGATCTCGGTGATGTCCAGCTCCTTGCACGCCCTGATGAGCTCCTCCCCGACCCTCCCAGCTGCCTCCACGGCGCCGCAGGGCGGGTCGCCGCAGATGGCCTTCTGCAGCGTGCTGCCGTAGAAGAGGATCTTCCTGTTGTGGTCGTCGACGAGCATGGCGTAGAGCTGCCTGTTGGAGCAGAACACGGACAGCCTCGGCTTCGTCGCCGTGCCATTGAACTTCTTCTGCAGCCTGCGGTTCCTGACCTTGGGGTTCTCCTTCCTCGCGCCGTGCCTCGCCGAGGCCTCGATCCTCGGGTACGAGCGCCGGCGCCCGACTCCGCCGGCGCCGCCTGCAGAAGCCGGAGTGAAGAACTGCACGCCAGGCGAGCTGGGAGGGCGGCAGCACGCCGGGCGCGGCGAGAATGGCAGCCCGGGGGCCGCGCGGAGCGATGCCATGGCACGCCCACGGGTGGAGACCTTGGCTAGCTGCTTGGGGTGGGCACGCAATCCGTCGAGCAGGTGCGGCGCGGAATACCCGGTGGGAGCTGCTACAGTGCCCGAGATTAGGATTTAGGAATGGGATTTGTCCTCACTTNTGGGGCCCCACCTGTCACCTGACAGGTAATACAAGGCTTAAGCAAGGGTGTAATCGCAAAATTCCCCCTCGAGTTTATTCTTTCCGTATCCAAAAA] [-] EMBL AK068500 [AATTAACTTGCATGCTCTCCAAGAAACTGATGCATCACAGTAACACACAGCCACCAATTCACATGTTTCCAGTTCATTTTTCATCAAATACACACTATTACTATCCTATCTACAGAAAGGCATCTCTATCTCTAACAATTTGCTGCTGCTATCTTGGCAGGAACCCGTACTGCGAGACCGGAACCTCGAACGCCATCATCTTCTCCCCTCGAGCAAACCCGTTGCGGTCGTAGGACGAGATCTCGGTGATGTCCAGCTCCTTGCACGCCCTGATGAGCTCCTCCCCGACCCTCCCAGCTGCCTCCACGGCGCCGCAGGGCGGGTCGCCGCAGATGGCCTTCTGCAGCGTGCTGCCGTAGAAGAGGATCTTCCTGTTGTGGTCGTCGACGAGCATGGCGTAGAGCTGCCTGTTGGAGCAGAACACGGACAGCCTCGGCTTCGTCGCCGTGCCATTGAACTTCTTCTGCAGCCTGCGGTTCCTGACCTTGGGGTTCTCCTTCCTCGCGCCGTGCCTCGCCGAGGCCTCGATCCTCGGGTACGAGCGCCGGCGCCCGACTCCGCCGGCGCCGCCTGCAGAAGCCGGAGTGAAGAACTGCACGCCAGGCGAGCTGGGAGGGCGGCAGCACGCCGGGCGCGGCGAGAATGGCAGCCCGGGGGCCGCGCGGAGCGATGCCATGGCACGCCCACGGGTGGAGACCTTGGCTAGCTGCTTGGGGTGGGCACGCAATCCGTCGAGCAGGTGCGGCGCGGA ] [+] EMBL AU222639 [ CGATCNTNGGGTACGAGCGCCGGCGCCCGACTCCGCCGGCGCCGCCTGCAGAAGCCGGAGTGAAGAACTGCACGCCAGGCGAGCTGGGAGGGCGGCAGCACGCCGGGCGCGGCGAGAATGGCAGCCCGGGGGCCGCGCGGAGCGATGCCATGGCACGCCCACGGGTGGAGACCTTGGCTAGCTGCTTGGGGTGGGCAGGCAATCCGTCGAGCAGGTGCGGCGCGGAATACCCGGTGGGAGCTGCTACAGTGCCCGAGATTAGGATTTAGGAATGGGATTTGTCCTCACTTNTGGGGCCCCACCTGTCACCTGACAGGTAATACAAGGCTTAAGCAAGGGTGTAATCGCAAAATTCCCCCTCGAGTTTATTCTTTCCGTATCCAAAAA] consensusID : consensus_12671#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 865 fasta sequence [CATACCATTCTAAAAAAAATAAAAAAAAACCAAATCCTTCTCTTCATTCCCAGCCTCCGTGACGCACGAGCAGAGTCCGTCGCCTCGCTTCCTCCGCCACCGCCAGCCCTTCCTCACCATCGCCACTTCCTCCAACGCCGGCGCCTCTCTTCCTTGGCTGGCGCCCATCCTCTCCTCCTCGACCAGCGCCTCAACTACAGATCCCCTCTCCAGTCTCATTTTCACTCGTCCCAGCCTCACNCCTGCGGCGGCGGCGGCGCTGTCGATTCACCGGCGGCGGCACNAGCGACGGCCAACGAGATCGGATTGTCTAAGGGGTTGGGATTTTGGGGGGGGTATGGCTCCGTCTGAGTGCCCGCCGTGGTGACAGGTGGGGCCCCAGAAATGAGGACAAATATCATTCATAAATCCTAATCTCGGGTACTGTAGAGCTCCCCCCGGGATTCCGCGCCCCACCTGCTCGACAGATTGCCCACCCCAAGCAGCTAGCCAGGTCTCCCCATGGCATCGCTCCGCGCGGCAACCGGGCTGCCATTCTCGCCGCGCCCGGCGTGCTGCCGCCCTCCCAGCTCGCCAGGCTCCAGGCGTGGCTTCGTGTTCCCGCCGCGCTTCGCACCTGGCGTGTTCCTTTTCTTTCCGCTGGATTCTGCAGGCGGCGGCGGAGTAGCTCGCCGGCGCGCGTACCCGAGGATCGAGGCCACGGCGAGGCACGGCGCGAGGAAGGAGAACCCCAAGGTCAGGAACCGCCGGCTGCAGAAGAAGTTCAATGGCACGGCGACGAAGCCGAGGCTATCCGTGTTCTGCTCCAACAGGCAGCTCTATGCCATGCTCGTCGACGACCACAACAAGAAGATCCTCTTCTATG] [+] EMBL C73161 [CATACCATTCTAAAAAAAATAAAAAAAAACCAAATCCTTCTCTTCATTCCCAGCCTCCGTGACGCACGAGCAGAGTCCGTCGCCTCGCTTCCTCCGCCACCGCCAGCCCTTCCTCACCATCGCCACTTCCTCCAACGCCGGCGCCTCTCTTCCTTGGCTGGCGCCCATCCTCTCCTCCTCGACCAGCGCCTCAACTACAGATCCCCTCTCCAGTCTCATTTTCACTCGTCCCAGCCTCACNCCTGCGGCGGCGGCGGCGCTGTCGATTCACCGGCGGCGGCACNAGCGACGGCCAACGAGATCGGATTGTCTAAGGGGTTGGGATTTTGGGGGGGGTATGGCTCC ] [+] EMBL CB642234 [ AGAGTCCGTCGCCTCGCTTCCTCCGCCACCGCCAGCCCTTCCTCACCATCGCCACTTCCTCCAACGCCGGCGCCTCTCTTCCTTGGCTGGCGCCCATCCTCTCCTCCTCGACCAGCGCCTCAACTACAGATCCCCTCTCCAGTCTCATTTTCACTCGTCCCAGCCTCACTCCTGCGGCGGCGGCGGCGCTGTCGATTCACCGGCGGCGGCAC TGCGACGGCCAACGAGATCGGATTGTCTA GGGTTTGGATTTT GGGGGTTATGGCTCCGTCTGAGTGCCCGCCGTGGTGACAGGTGGGGCCCCAGAAATGAGGACAAATATCATTCATAAATCCTAATCTCGGGTACTGTAGAGCTCCCCCCGGGATTCCGCGCCCCACCTGCTCGACAGATTGCCCACCCCAAGCAGCTAGCCAGGTCTCCCCATGGCATCGCTCCGCGCGGCAACCGGGCTGCCATTCTCGCCGCGCCCGGCGTGCTGCCGCCCTCCCAGCTCGCCAGGCTCCAGGCGTGGCTTCGTGTTCCCGCCGCGCTTCGCACCTGGCGTGTTCCTTTTCTTTCCGCTGGATTCTGCAGGCGGCGGCGGAGTAGCTCGCCGGCGCGCGTACCCGAGGATCGAGGCCACGGCGAGGCACGGCGCGAGGAAGGAGAACCCCAAGGTCAGGAACCGCCGGCTGCAGAAGAAGTTCAATGGCACGGCGACGAAGCCGAGGCTATCCGTGTTCTGCTCCAACAGGCAGCTCTATGCCATGCTCGTCGACGACCACAACAAGAAGATCCTCTTCTATG] consensusID : consensus_12671#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 719 fasta sequence [GCGACCAAGCACCCGTTGACACGGGCGGTCTGGTCGAGGCGGCAACGACGGTCATGCTGTGAGGGTGGGTGTTCAAGCCTGTGGCAAGCTTCCTTCCAGGCGTCTGCCCTCTTACGGTGGCGGCTTGCCG-CGAAAGATGGCCACAGTGGACGAGCGAGTGCGGGGGAGAGGGGATCCATTCTTCTCTCTCACCCTCTCCCTCTCCAACCCAACCACGTGGATGGATGTGAAGCGCGGTGAAGGTTAGGACTCTTCTTCGATGGCTAGCCGGCGGCGAGGCGTCGGCGCGGTGGCTGCGCGTCGAAGGGGATTAGATGGTGGTTCTGCTGAACTGGCATGCACTTTTTAACGCGGGAGAGTAGAACAACGGGCGAAAGCCTAGCCTTCGGGCCGGCAACGGCGACGCTGCGGGCGCCGTTTTCCCCTTGGGGTGTTGCCGTGTTTTCTATTTTCCCAGTGGGTTCTTCTTGGAGACGTCGTTTAGAAGTCATATTCCTTTGAGAGTGTTGTGTGCTTGTTTTGTTTTAAACAATAGGATCAGACGTATAAGCGTGGTGTGGTTGTTTATTTTCTTTTTCCTGACTATAGTCTCCCAGGACTATAGGCTTGTATTTTATTCCTTCTTTATCAATAGAAACATCATACTATCTTATGCGGGTTGTTTCAAAAAAAATGGCCGGGAAAACAAAATAAGGCTTTGCAGACAATTTTTAAAAAAA] [+] EMBL AU078772 [GCGACCAAGCACCCGTTGACACGGGCGGTCTGGTCGAGGCGGCAACGACGGTCATGCTGTGAGGGTGGGTGTTCAAGCCTGTGGCAAGCTTCCTTCCAGGCGTCTGCCCTCTTACGGTGGCGGCTTGCCG CGAAAGATGGCCACAGTGGACGAGCGAGTGCGGGGGAGAGGGGATCCATTCTTCTCTCTCACCCTCTCCCTCTCCAACCCAACCACGTGGATGGATGTGAAGCGCGGTGAAGGTTAGGACTCTTCTTCGATGGCTAGCCGGCGGCGAGGCGTCGGCGCGGTGGCTGCGCGTCGAAGGGGATTAGATGGTGGTTCTGCTGAACTGGCATGCACTTTTTAACGCGGGAGAGTAG ] [+] EMBL AU078773 [ aCCNTTGACACGGNCGGTCTGGTCGAGCCGGCAACGACGGTCATGCTGTGAGGGTGGGTGTTCAAG CTGTGGCAAGCTTCCTTCCAGGCGTCTGCCCTCTTACGGTGGC GCTTGCCGCCGAAAGATGGCCACAGTGGACGAGCGAGTGCGGGGGAGAGGGGATCCATTCTTCTCTCTCACCCTCTCCCTCTCCAACCCAACCACGTGGATGGATGTGAAGCGCGGTGAAGGTTAGGACTCTTCTTCGATGGCTAGCCGGCGGCGAGGCGTCGGCGCGGT GNTGCGCGTCGAAGGGGATTAGATGGTGGTTCTGCTGAACTGGCATGCACTTTTTAACGCGGGAGAGTAGAACAACGGGCGAAAGCCTAGCCTTCGGGCCGGCAACGGCGACGCTGCGGGCGCCGTTTTCCCCTTGGGGTGTTGCCGTGTTTTCTATTTTCCCAGTGGGTTCTTCTTGGAGACGTCGTTTAGAAGTCATATTCCTTTGAGAGTGTTGTGTGCTTGTTTTGTTTTAAACAATAGGATCAGACGTATAAGCGTGGTGTGGTTGTTTATTTTCTTTTTCCTGACTATAGTCTCCCAGGACTATAGGCTTGTATTTTATTCCTTCTTTATCAATAGAAACATCATACTATCTTATGCGGGTTGTTTCAAAAAAAATGGCCGGGAAAACAAAATAAGGCTTTGCAGACAATTTTTAAAAAAA] [+] EMBL C99135 [ gttttcCTTCTTGGAGACGTCGTTTAGAAGTCATATTCCTTTGAGAGTGTTGTGTGCTTGTTTTGTTTTAAACAATAGGATCAGACGTATAAGCGTGGTGTGGTTGTTTATTTTCTTTTTCCTGACTATAGTCTCCCAGGACTATAGGCTTGTATTTTATTCCTTCTTTATCAATAGAAACATCATACTATCTTAaaaaaa ] consensusID : consensus_12671#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence [TTTGAAAGTGCNACCCAAGCAGTAGCAGTTTCCCANGCTTGTCGGGGGCACCGGNTNCATTTTGCCGCCCCGGNGTGTGCCCCTTCCNAGTTGCCAGGNTCCAGGGTGGTTTGTGTTCCCCCNGCGTTTGCAACNTGGGTGTTCNTTTTCTTTCCGTTGGATTCTGCAGGCGGCGGCGGAGTAGTTCGCCGGCGCGCGTACCCGAGGATCGAGGCCACGGCGAGGCACGGCGCGAGGAAGGAGAACCCCAAGGTCAGGAACCGCCGGCTGCAGAAGAAGTTCAATGGCACGGCGACGAAGCCGAGGCTATCCGTGTTCTGCTCCAACAGGCAGCTCTATGCCATGCTCGTCGACGACCACAACAAGAAGATCCTCTTCTATGGCAGCACCCTGCAGAAGGCCATCTGCGGTGACCCTCCCTGCGGCGCCGTGGAGGCAGCTGGGAGGATCGGGGAGGAGCTCATCAGGGCGTGCAAGGAGCTGGACATCACCGAGATCTCGTCCTACGACCGC] [+] EMBL AA753612 [TTTGAAAGTGCNACCCAAGCAGTAGCAGTTTCCCANGCTTGTCGGGGGCACCGGNTNCATTTTGCCGCCCCGGNGTGTGCCCCTTCCNAGTTGCCAGGNTCCAGGGTGGTTTGTGTTCCCCCNGCGTTTGCAACNTGGGTGTTCNTTTTCTTTCCGTTGGATTCTGCAGGCGGCGGCGGAGTAGTTCGCCGGCGCGCGTACCCGAGGATCGAGGCCACGGCGAGGCACGGCGCGAGGAAGGAGAACCCCAAGGTCAGGAACCGCCGGCTGCAGAAGAAGTTCAATGGCACGGCGACGAAGCCGAGGCTATCCGTGTTCTGCTCCAACAGGCAGCTCTATGCCATGCTCGTCGACGACCACAACAAGAAGATCCTCTTCTATGGCAGCACCCTGCAGAAGGCCATCTGCGGTGACCCTCCCTGCGGCGCCGTGGAGGCAGCTGGGAGGATCGGGGAGGAGCTCATCAGGGCGTGCAAGGAGCTGGACATCACCGAGATCTCGTCCTACGACCGC] consensusID : consensus_12671#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [CTTGAATTAATTGCATGCTCTCCAAGAAACTGATGCATCACAGAACCCGTACTGCGAGACCGGAACCTCGAACGCCATCATCTTCTCCCCTCGAGCAAACCCGTTGCGGTCGTAGGACGAGATCTCGGTGATGTCCAGCTCCTTGCACGCCCTGATGAGCTCCTCCCCGACCCTCCCAGCTGCCTCCTGTCACAACAAGCCAGCCAGCTCAAGATATCAATACAATGAGCAGTTTATGTCTAATTACTAGGTGAAATTCTTGGAGGCGTCGTTTAGAAGTCCTATTCCTTTAGGGTGTTGTGTGCTTATNTTGTNTTAAGTAGTAGGATCAGACGTAGACGCGTGGTGTGGTTGTATATTTTCTTTTTCCTGTCTATAGTCTCCCAGGACTGTAGGCTTGTATTTTATTCCTTCAATAGAAACATCGCACTATCTTGTGCGGGT] [+] EMBL C74907 [CTTGAATTAATTGCATGCTCTCCAAGAAACTGATGCATCACAGAACCCGTACTGCGAGACCGGAACCTCGAACGCCATCATCTTCTCCCCTCGAGCAAACCCGTTGCGGTCGTAGGACGAGATCTCGGTGATGTCCAGCTCCTTGCACGCCCTGATGAGCTCCTCCCCGACCCTCCCAGCTGCCTCCTGTCACAACAAGCCAGCCAGCTCAAGATATCAATACAATGAGCAGTTTATGTCTAATTACTAGGTGAAATTCTTGGAGGCGTCGTTTAGAAGTCCTATTCCTTTAGGGTGTTGTGTGCTTATNTTGTNTTAAGTAGTAGGATCAGACGTAGACGCGTGGTGTGGTTGTATATTTTCTTTTTCCTGTCTATAGTCTCCCAGGACTGTAGGCTTGTATTTTATTCCTTCAATAGAAACATCGCACTATCTTGTGCGGGT] consensusID : consensus_12671#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence [CGTCGGCGCGGTNGCTGCGCGTNGAAGGGGATTAGATGGTGGTTCTNCTGAACTGGCATGCACTTTTTAACGCGGGANAGTAGAACAACGGGCGAAANCTAGCCTTCGGGCCGGCAACNGCGACNCCTGCGGGCGCCGTTTTCCCCTTGGGGTGTTNCCGTGTTTTCTATTTTCCCAGTNGGTTCTTCAGGTGAAAACCTTGTCCTGGTTACCTAGGACGAACNGCGGCGGCGCTTTTNGCGTCGTTTTCCTTCTTGGAGACNTCGTTTAGAAGTCATATTCCTTTGAGAGTGTTGTGTGCTTGTTTTGTTTTAAACAATAGGATCAGACGTATAANCGTGGTGT] [+] EMBL C99134 [CGTCGGCGCGGTNGCTGCGCGTNGAAGGGGATTAGATGGTGGTTCTNCTGAACTGGCATGCACTTTTTAACGCGGGANAGTAGAACAACGGGCGAAANCTAGCCTTCGGGCCGGCAACNGCGACNCCTGCGGGCGCCGTTTTCCCCTTGGGGTGTTNCCGTGTTTTCTATTTTCCCAGTNGGTTCTTCAGGTGAAAACCTTGTCCTGGTTACCTAGGACGAACNGCGGCGGCGCTTTTNGCGTCGTTTTCCTTCTTGGAGACNTCGTTTAGAAGTCATATTCCTTTGAGAGTGTTGTGTGCTTGTTTTGTTTTAAACAATAGGATCAGACGTATAANCGTGGTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12671#1 ------------------------------------------------------------ consensus_12671#5 ------------------------------------------------------------ consensus_12671#0 AATCTACCTGGAAGAACAAACTGCTCGCCCCCGCGTCGCCCACGCGCGGGCGACACGGGG 60 consensus_12671#6 ------------------------------------------------------------ consensus_12671#3 ------------------------------------------------------------ consensus_12671#2 ------------------------------------------------------------ consensus_12671#4 ------------------------------------------------------------ consensus_12671#1 ------------------------------------------------------------ consensus_12671#5 ------------------------------------------------------------ consensus_12671#0 GGAAACCCTAGCGCCGCCTCCGCCACTCTCTCCTCCTCTCCCTCCCCTCGCCGCTGCCGG 120 consensus_12671#6 ------------------------------------------------------------ consensus_12671#3 ------------------------------------------------------------ consensus_12671#2 ------------------------------------------------------------ consensus_12671#4 ------------------------------------------------------------ consensus_12671#1 ------------------------------------------------------------ consensus_12671#5 ------------------------------------------------------------ consensus_12671#0 AACGCGCCGCCGGAGAACCGCGCGGCCAGCCGGGATGGCGGCGGCGAGGCCAACCCCCGA 180 consensus_12671#6 ------------------------------------------------------------ consensus_12671#3 ------------------------------------------------------------ consensus_12671#2 ------------------------------------------------------------ consensus_12671#4 ------------------------------------------------------------ consensus_12671#1 ------------------------------------------------------------ consensus_12671#5 ------------------------------------------------------------ consensus_12671#0 CGGCGCCCCGTCTCCGCGCGTGGATGGCGGGCCGGCGCGTGGTGCAAGGCTGACGACGCG 240 consensus_12671#6 ------------------------------------------------------------ consensus_12671#3 ------------------------------------------------------------ consensus_12671#2 ------------------------------------------------------------ consensus_12671#4 ------------------------------------------------------------ consensus_12671#1 ------------------------------------------------------------ consensus_12671#5 ------------------------------------------------------------ consensus_12671#0 GCGTGGAGACGGTGGATCCGGCGCCGCTGCGGCCGGATCTGGCCTCCCCGCGGTTGGATC 300 consensus_12671#6 ------------------------------------------------------------ consensus_12671#3 ------------------------------------------------------------ consensus_12671#2 ------------------------------------------------------------ consensus_12671#4 ------------------------------------------------------------ consensus_12671#1 ------------------------------------------------------------ consensus_12671#5 ------------------------------------------------------------ consensus_12671#0 CGGCGGATCCACGCCGGATCTGGCCGGAGGCGGCGGCGGCTAGCGGCTGGTGGCTGGTGG 360 consensus_12671#6 ------------------------------------------------------------ consensus_12671#3 ------------------------------------------------------------ consensus_12671#2 ------------------------------------------------------------ consensus_12671#4 ------------------------------------------------------------ consensus_12671#1 ------------------------------------------------------------ consensus_12671#5 ------------------------------------------------------------ consensus_12671#0 CTGGCGGCGACGACGAGAGCCGGAGGCTGGTGGCTGGCGGCCGCTGGCGAAGGAGGCCGG 420 consensus_12671#6 ------------------------------------------------------------ consensus_12671#3 ------------------------------------------------------------ consensus_12671#2 ------------------------------------------------------------ consensus_12671#4 ------------------------------------------------------------ consensus_12671#1 ------------------------------------------------------------ consensus_12671#5 ------------------------------------------------------------ consensus_12671#0 TGCATGCAGAGGATGCAGTGGCGACGGCGAGGCCACGGTGGCGGAGGCGGTGGAGGATGG 480 consensus_12671#6 ------------------------------------------------------------ consensus_12671#3 ------------------------------------------------------------ consensus_12671#2 ------------------------------------------------------------ consensus_12671#4 ------------------------------------------------------------ consensus_12671#1 ------------------------------------------------------------ consensus_12671#5 ------------------------------------------------------------ consensus_12671#0 CGCGGGGAGACGCGGCTGGAGGCCGACGCATGCGGAGGCCGCGGACGGCGATGCGACTGG 540 consensus_12671#6 ------------------------------------------------------------ consensus_12671#3 ------------------------------------------------------------ consensus_12671#2 ------------------------------------------------------------ consensus_12671#4 ------------------------------------------------------------ consensus_12671#1 ------------------------------------------------------------ consensus_12671#5 ------------------------------------------------------------ consensus_12671#0 AGGCTGCGGAGGCCGGCGCACATGGAGGCGCGGCTGGAGGCCGGCGTGCGTGGAGGCCGT 600 consensus_12671#6 ------------------------------------------------------------ consensus_12671#3 ------------------------------------------------------------ consensus_12671#2 ------------------------------------------------------------ consensus_12671#4 ------------------------------------------------------------ consensus_12671#1 ------------------------------------------------------------ consensus_12671#5 ------------------------------------------------------------ consensus_12671#0 GGTGGCGGCCGCAGCGGAGGCTCGGCCGATGACGGCGGAGGGCGACGTGGCACAGCCGGC 660 consensus_12671#6 ------------------------------------------------------------ consensus_12671#3 ------------------------------------------------------------ consensus_12671#2 ---CATACCATTCTAAAAAAAATAAAAAAAAACCAAATCCTTCTCTTCATTCCCAGCCTC 57 consensus_12671#4 ------------------------------------------------------------ consensus_12671#1 ------------------------------------------------------------ consensus_12671#5 ------------------------------------------------------------ consensus_12671#0 GACAGGGGACGGCTACAAGGCGCGACGGATCGGCGGTGGTGAAGCCCGTCGGCGGTGGTG 720 consensus_12671#6 ------------------------------------------------------------ consensus_12671#3 ------------------------------------------------------------ consensus_12671#2 CGTGACGCACGAGCAGAGTCCGTCGCCTCGCTTCCTCCGCCACCGCCAGCCCTTCCTCAC 117 consensus_12671#4 ------------------------------------------------------------ consensus_12671#1 ------------------------------------------------------------ consensus_12671#5 ------------------------------------------------------------ consensus_12671#0 ACGGTGAGGCGATGGCTGCGGTGAGGAGGACGGAGGCGACGGCGATGCGACCAAGCACCC 780 consensus_12671#6 ------------------------------------------------------------ consensus_12671#3 ----------------------------------------------GCGACCAAGCACCC 14 consensus_12671#2 CATCGCCACTTCCTCCAACGCCGGCGCCTCTCTTCCTTGGCTGGCGCCCATCCTCTCCTC 177 consensus_12671#4 ------------------------------------------------------------ consensus_12671#1 ------------------------------------------------------------ consensus_12671#5 ------------------------------------------------------------ consensus_12671#0 GTTGACACGG-CGGTTTGATCGAGGCGGCGATGACGGTCATGCTGTGAGGG-GGGTGTTG 838 consensus_12671#6 ------------------------------------------------------------ consensus_12671#3 GTTGACACGGGCGGTCTGGTCGAGGCGGCAACGACGGTCATGCTGTGAGGGTGGGTGTTC 74 consensus_12671#2 CTCGACCAGCGCCTCAACTACAGATCCCCTCTCCAGTCTCATTTTCACTCGTCCCAGCCT 237 consensus_12671#4 ------------------------------------------------------------ consensus_12671#1 ------------------------------------------------------------ consensus_12671#5 ------------------------------------------------------------ consensus_12671#0 AAGCCTGCGGCGAGCTTCCATCCAGGCGTCTGCCTTCTTGCGGTGGCGGCTTGCCGCCGA 898 consensus_12671#6 ------------------------------------------------------------ consensus_12671#3 AAGCCTGTGGCAAGCTTCCTTCCAGGCGTCTGCCCTCTTACGGTGGCGGCTTGCCGC-GA 133 consensus_12671#2 CACNCCTGCGGCGGCGGCGGCGCTGTCGATTCACCGGCGGCGGCACNAGCGACGGCCAAC 297 consensus_12671#4 ------------------------------------------------------------ consensus_12671#1 -----------AATTAACTTGCATGCTCTCCAAGAAACTGATGCATCACAGTAACACACA 49 consensus_12671#5 ------------------------------------------------------------ consensus_12671#0 AAGATGGCCACGCTGGACGGGCGAGTGCGGGG-AGAGGGGATCCATTCTTCTCTCTCACC 957 consensus_12671#6 ------------------------------------------------------------ consensus_12671#3 AAGATGGCCACAGTGGACGAGCGAGTGCGGGGGAGAGGGGATCCATTCTTCTCTCTCACC 193 consensus_12671#2 GAGATCGGATTGTCTAAGGGGTTGGGATTTTGGGGGGGGTATGGCTCCGTCTGAGTGCCC 357 consensus_12671#4 ------------------------------------------------------------ consensus_12671#1 GCCACCAATTCACATGTTTCCAGTTCATTTTTCATCAAATACACACTATTACTATCCTAT 109 consensus_12671#5 ----------------------------------------------------------CT 2 consensus_12671#0 TTCTCCCTCTCCAACCCAACCACGTGGATGGACGTGAAGCGCGGTGAAGGTTGAGACTCT 1017 consensus_12671#6 ------------------------------------------------------------ consensus_12671#3 CTCTCCCTCTCCAACCCAACCACGTGGATGGATGTGAAGCGCGGTGAAGGTTAGGACTCT 253 consensus_12671#2 GCCGTGGTGACAGGTGGGGCCCCAGAAATGAGGACAAATATCATTCATAAATCCTAATCT 417 consensus_12671#4 ------------------------------------------------------------ consensus_12671#1 CTACAGAAAGGCATCTCTATCTCTAACAATTTGCTGCTGCTATCTTGGCAGGAACCCGTA 169 consensus_12671#5 TGAATTAATTGCATGC---TCTCCAAGAAACTGATGC----ATCACAG----AACCCGTA 51 consensus_12671#0 TCTTTGATGGCCGGAC--GGTGGCGAGGCGTCGGCGCGG-TGGCTACGTGTCAAAGGGAA 1074 consensus_12671#6 ----------------------------CGTCGGCGCGG-TNGCTGCGCGTNGAAGGGGA 31 consensus_12671#3 TCTTCGATGGCTAGCC--GGCGGCGAGGCGTCGGCGCGG-TGGCTGCGCGTCGAAGGGGA 310 consensus_12671#2 CGGGTACTGTAGAGCTC--CCCCCGGGATTCCGCGCCCCACCTGCTCGACAGATTGCCCA 475 consensus_12671#4 ------------------------------------------------TTTGAAAGTGCN 12 consensus_12671#1 CTGCGAGACCGGAACCTCGAAC-GCCATCATCTTCTCCCCTCGAGCAAACCCG-TTGCGG 227 consensus_12671#5 CTGCGAGACCGGAACCTCGAAC-GCCATCATCTTCTCCCCTCGAGCAAACCCG-TTGCGG 109 consensus_12671#0 TTAGATGGTGGTTCTGCTAAACTGGCATGCACTTTTTGACGCGGGAGAGTAGAACAACAG 1134 consensus_12671#6 TTAGATGGTGGTTCTNCTGAACTGGCATGCACTTTTTAACGCGGGANAGTAGAACAACGG 91 consensus_12671#3 TTAGATGGTGGTTCTGCTGAACTGGCATGCACTTTTTAACGCGGGAGAGTAGAACAACGG 370 consensus_12671#2 CCCCAAG-CAGCTAGCCAGGTCTCCCCATGGCATCGCTCCGCGCGGCAACCGGGCTGCCA 534 consensus_12671#4 ACCCAAG-CAG-TAGC--AGTTTCCCAN-------GCTTGTCGGGGGCACCGGNT--NCA 59 * * * ** * consensus_12671#1 TCGTAGGACGAGATCTCGG--TGATGTCCA-GCTCCTTGCACGCCCTGATGAGCTCCTCC 284 consensus_12671#5 TCGTAGGACGAGATCTCGG--TGATGTCCA-GCTCCTTGCACGCCCTGATGAGCTCCTCC 166 consensus_12671#0 GCGAAAGCCTAGCTTTCGGGCCGGCAACGGCGACGCCTACGGGCGCCGTTTT-CCCCTTG 1193 consensus_12671#6 GCGAAANC-TAGCCTTCGGGCCGGCAACNGCGACNCCTGCGGGCGCCGTTTT-CCCCTTG 149 consensus_12671#3 GCGAAAGCCTAGCCTTCGGGCCGGCAACGGCGACGC-TGCGGGCGCCGTTTT-CCCCTTG 428 consensus_12671#2 TTCTCGCC---GCGCCCGGCGTGCTG-CCGCCCTCCCAGCTCGCCAGGCTCCAGGCGTGG 590 consensus_12671#4 TTTT-GCC---GC-CCCGGNGTG-TG-C--CCCTTCCNAGTTGCCAGGNTCCAGG-GTGG 109 * *** * * * ** * * * consensus_12671#1 CCGACCCTCCCAGCTGCCTCCACGGCGCCGCAGGGCGGGTCGCCGCAGATGGCCTTCTG- 343 consensus_12671#5 CCGACCCTCCCAGCTGCCTCC-TGTCACAACAAGCCAGCCAGCTCAAGATA----TCAA- 220 consensus_12671#0 GGGCATTGTCGTGTTTTCTATTTTTCCCAGTGGGTTCTTCAGGTGAAAACCTCGTCCTGG 1253 consensus_12671#6 GGGTGTTNCCGTGTTTTCTATTTT-CCCAGTNGGTTCTTCAGGTGAAAACCTTGTCCTGG 208 consensus_12671#3 GGGTGTTGCCGTGTTTTCTATTTT-CCCAGTGGGTTCTTC-------------------- 467 consensus_12671#2 CTTCGTGTTCCCGCCGCGCTTCGCACCTGGCGTGTTCCTTTTCTTTCCGCTGGATTCTGC 650 consensus_12671#4 -TTTGTGTTCCCCCNGCG-TTTGCAACNTGGGTGTTCNTTTTCTTTCCGTTGGATTCTGC 167 * * consensus_12671#1 ------CAGCGTGCTGCCGTAGAAGAGGATCTTCCTGTTGTGGTCGTCGACGAGCATGGC 397 consensus_12671#5 ------TACAATGA-GCAGTTTATGTCTAATTACTAGGTGAAATTCTTGGAG-GCGTCGT 272 consensus_12671#0 TTACCTAGGACGGACGGTGGCGGCGCTTTTGTCGTCGTTTTCCTTCTTGGAG-GCATCGT 1312 consensus_12671#6 TTACCTAGGACGAACNGCGGCGGCGCTTTTNGCGTCGTTTTCCTTCTTGGAG-ACNTCGT 267 consensus_12671#3 ----------------------------------------------TTGGAG-ACGTCGT 480 consensus_12671#2 -------------AGGCGGCGGCGGAGTAGCTCGCCGGCGCGCGTACCCGAGGATCGAGG 697 consensus_12671#4 -------------AGGCGGCGGCGGAGTAGTTCGCCGGCGCGCGTACCCGAGGATCGAGG 214 * * consensus_12671#1 GTAGAGCTGCCTGTTGGAGC-AGAACACGGACAGCCTCGGCTTCGTC--GCCGTGCCATT 454 consensus_12671#5 TTAGAAGT-CCTATTCCTTT-AGGGTGTTGTGTGCTTATNTTGTNTTAAGTAGTAGGATC 330 consensus_12671#0 TTAGAAGT-CCTATTCCTTTGGG-GTGTTGTGTGCTTGTTTTGTTTTAAACAGTAGGATC 1370 consensus_12671#6 TTAGAAGT-CATATTCCTTTGAGAGTGTTGTGTGCTTGTTTTGTTTTAAACAATAGGATC 326 consensus_12671#3 TTAGAAGT-CATATTCCTTTGAGAGTGTTGTGTGCTTGTTTTGTTTTAAACAATAGGATC 539 consensus_12671#2 CCACGGCGAGGCACGGCGCGAGGAAGGAGAACCCCAAGGTCAGGAACCGCCGGCTGCAGA 757 consensus_12671#4 CCACGGCGAGGCACGGCGCGAGGAAGGAGAACCCCAAGGTCAGGAACCGCCGGCTGCAGA 274 * * * * consensus_12671#1 GAACTTCTTCT-GCAGCCTGCGGTTCCTGACCTTGGGGTTCTCCTTCCTCGCGCCGTGCC 513 consensus_12671#5 AGACGTAGAC--GCGTGGTGTGGTTGTATATTTTCT--TTTTCCTGTCTATAGTCTCCCA 386 consensus_12671#0 AGACGTAGAC--GCGTGGTGTGGTTGTATATTTTCT--TTTTCCTGACTACAGTCTCCCA 1426 consensus_12671#6 AGACGTATAA--NCGTGGTGT--------------------------------------- 345 consensus_12671#3 AGACGTATAA--GCGTGGTGTGGTTGTTTATTTTCT--TTTTCCTGACTATAGTCTCCCA 595 consensus_12671#2 AGAAGTTCAATGGCACGGCGACGAAGCCGAGGCTATCCGTGTTCTGCTCCAA----CAGG 813 consensus_12671#4 AGAAGTTCAATGGCACGGCGACGAAGCCGAGGCTATCCGTGTTCTGCTCCAA----CAGG 330 * * * * consensus_12671#1 TCGCCG-AGGCCTCGATCCTCGGG------TACGAGCGCCGGCGCCCGACTCCGCCGGCG 566 consensus_12671#5 GGACTGTAGGCTTGTATTTTATTC------CTTCAATAGAAACATCGCACTAT-CTTGTG 439 consensus_12671#0 GGACTATAGGCTTGTATTTTATTCCTTCTTTATCAATAGAAACGTCGCACTAT-CTTGTG 1485 consensus_12671#6 ------------------------------------------------------------ consensus_12671#3 GGACTATAGGCTTGTATTTTATTCCTTCTTTATCAATAGAAACATCATACTAT-CTTATG 654 consensus_12671#2 CAGCTCTATGCCATGCTCGTCGACGA----CCACAACAAGAAGATCCTCTTCTATG---- 865 consensus_12671#4 CAGCTCTATGCCATGCTCGTCGACGA----CCACAACAAGAAGATCCTCTTCTATGGCAG 386 consensus_12671#1 CCGCCTGCAGAAGCCGGAGTGAAGAACTGCACGCCAGGCGAGCTGGGAGGGCGGCAGCAC 626 consensus_12671#5 CGGGT------------------------------------------------------- 444 consensus_12671#0 C----------------------------------------------------------- 1486 consensus_12671#6 ------------------------------------------------------------ consensus_12671#3 CGGGTTGTTTCAAAAAAAATGGCCGGGAAAACAAAATAAGGCTTTGCAGACAATTTTTAA 714 consensus_12671#2 ------------------------------------------------------------ consensus_12671#4 CACCCTGCAGAAGGCCATCTGCGGTGACCCTCCCTGCGGCGCCGTGGAGGCAGCTGGGAG 446 consensus_12671#1 GCCGGGCGCGGCGAGAATGGCAGCCCGGGGGCCGCGCGGAGCGATGCCATGGCACGCCCA 686 consensus_12671#5 ------------------------------------------------------------ consensus_12671#0 ------------------------------------------------------------ consensus_12671#6 ------------------------------------------------------------ consensus_12671#3 AAAAA------------------------------------------------------- 719 consensus_12671#2 ------------------------------------------------------------ consensus_12671#4 GATCGGGGAGGAGCTCATCAGGGCGTGCAAGGAGCTGGACATCACCGAGATCTCGTCCTA 506 consensus_12671#1 CGGGTGGAGACCTTGGCTAGCTGCTTGGGGTGGGCACGCAATCCGTCGAGCAGGTGCGGC 746 consensus_12671#5 ------------------------------------------------------------ consensus_12671#0 ------------------------------------------------------------ consensus_12671#6 ------------------------------------------------------------ consensus_12671#3 ------------------------------------------------------------ consensus_12671#2 ------------------------------------------------------------ consensus_12671#4 CGACCGC----------------------------------------------------- 513 consensus_12671#1 GCGGAATACCCGGTGGGAGCTGCTACAGTGCCCGAGATTAGGATTTAGGAATGGGATTTG 806 consensus_12671#5 ------------------------------------------------------------ consensus_12671#0 ------------------------------------------------------------ consensus_12671#6 ------------------------------------------------------------ consensus_12671#3 ------------------------------------------------------------ consensus_12671#2 ------------------------------------------------------------ consensus_12671#4 ------------------------------------------------------------ consensus_12671#1 TCCTCACTTNTGGGGCCCCACCTGTCACCTGACAGGTAATACAAGGCTTAAGCAAGGGTG 866 consensus_12671#5 ------------------------------------------------------------ consensus_12671#0 ------------------------------------------------------------ consensus_12671#6 ------------------------------------------------------------ consensus_12671#3 ------------------------------------------------------------ consensus_12671#2 ------------------------------------------------------------ consensus_12671#4 ------------------------------------------------------------ consensus_12671#1 TAATCGCAAAATTCCCCCTCGAGTTTATTCTTTCCGTATCCAAAAA 912 consensus_12671#5 ---------------------------------------------- consensus_12671#0 ---------------------------------------------- consensus_12671#6 ---------------------------------------------- consensus_12671#3 ---------------------------------------------- consensus_12671#2 ---------------------------------------------- consensus_12671#4 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||