These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12674#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1181 fasta sequence [AGATAGGGATAAGGGGAAGAGGAGGAAGAAGGAGGAGGTGTAGGGAGAAACCGGAGCAACCTCGAAGCTAGTCCAAACTAGTGGGAGGTTGTCTTTCCGGCAAGCCGGAGCCCGGAGCTATCGATCATCAAGCTTTCTACCCCGACCGACGAGGAAGAAGACGACTGATCAATTGATCAAACCGATCTCTCCATAGCTAGGTAGACAGGAGGAGAGGAGGAAGAAGAGGGGGAGAGGAGACTTATCTTGATCGATGGCGCGAGGCAAGGTGCAGCTCCGTCGCATCGAGAACCCGGTTCACCGTCAGGTCACCTTCTGCAAGCGCCGTGCCGGCCTGC-TGAAGAAGGCCA-GGGAGCTCTCCATCCTCTGCGAGG-CCGAC-ATCGGC-ATC-ATCATCTT-CTCCGCCCACGGC-AAGCTCTAC-GACCT--CGCCACCACCGGAACCATGGAGGAGCTGATCGAGAGGTACAAGAGTGCTAGTGGCGAACAGGCCAACGCCTGCGGCGACCAGAGAATGGACCCAAAACAGGAGGCAATGGTGCTCAAACAAGAAATCAATCTACTGCAGAAGGGCCTGAGGTACATCTATGGGAACAGGGCAAATGAACACATGACTGTTGAAGAGCTGAATGCCCTAGAGAGGTACTTAGAGATATGGATGTACAACATTCGCTCCGCAAAGATGCAGATAATGATCCAAGAGATCCAAGCACTAAAGAGCAAGGAAGGCATGTTGAAAGCTGCTAACGAAATTCTCCAAGAAAAGATAGTAGAACAGAATGGTCTGATCGACGTAGGCATGATGGTAGCAGATCAACAGAATGGGCATTTTAGTACAGTCCCACTGTTAGAAGAGATCACTAACCCACTGACTATACTGAGTGGCTATTCTACTTGTAGGGGCTCGGAG-ATGGGCTATTCCTTCTAACACTAATAATGGCCTGGGGGATACTTGTGTTCATTACTAGTGTGTAATATGGTTAATAATGCTTGTGTTGCTGTTTGCTTTGCTATTCTGATGTACCTTATTTAGACAAGTTCCCGCAGGAAGTGTCTTTTAGTATTGTATTTGTCTTGGGCTGTGGTGCTTTGTTTTTCCCTAAAGAACTCTTGAGGAGCTCTGTTGTTGAACCATTTCAAGTAATTGAGACTATTGTTTCCTGGAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK069122 [AGATAGGGATAAGGGGAAGAGGAGGAAGAAGGAGGAGGTGTAGGGAGAAACCGGAGCAACCTCGAAGCTAGTCCAAACTAGTGGGAGGTTGTCTTTCCGGCAAGCCGGAGCCCGGAGCTATCGATCATCAAGCTTTCTACCCCGACCGACGAGGAAGAAGACGACTGATCAATTGATCAAACCGATCTCTCCATAGCTAGGTAGACAGGAGGAGAGGAGGAAGAAGAGGGGGAGAGGAGACTTATCTTGATCGATGGCGCGAGGCAAGGTGCAGCTCCGTCGCATCGAGAACCCGGTTCACCGTCAGGTCACCTTCTGCAAGCGCCGTGCCGGCCTGC TGAAGAAGGCCA GGGAGCTCTCCATCCTCTGCGAGG CCGAC ATCGGC ATC ATCATCTT CTCCGCCCACGGC AAGCTCTAC GACCT CGCCACCACCGGAACCATGGAGGAGCTGATCGAGAGGTACAAGAGTGCTAGTGGCGAACAGGCCAACGCCTGCGGCGACCAGAGAATGGACCCAAAACAGGAGGCAATGGTGCTCAAACAAGAAATCAATCTACTGCAGAAGGGCCTGAGGTACATCTATGGGAACAGGGCAAATGAACACATGACTGTTGAAGAGCTGAATGCCCTAGAGAGGTACTTAGAGATATGGATGTACAACATTCGCTCCGCAAAGATGCAGATAATGATCCAAGAGATCCAAGCACTAAAGAGCAAGGAAGGCATGTTGAAAGCTGCTAACGAAATTCTCCAAGAAAAGATAGTAGAACAGAATGGTCTGATCGACGTAGGCATGATGGTAGCAGATCAACAGAATGGGCATTTTAGTACAGTCCCACTGTTAGAAGAGATCACTAACCCACTGACTATACTGAGTGGCTATTCTACTTGTAGGGGCTCGGAG ATGGGCTATTCCTTCTAACACTAATAATGGCCTGGGGGATACTTGTGTTCATTACTAGTGTGTAATATGGTTAATAATGCTTGTGTTGCTGTTTGCTTTGCTATTCTGATGTACCTTATTTAGACAAGTTCCCGCAGGAAGTGTCTTTTAGTATTGTATTTGTCTTGGGCTGTGGTGCTTTGTTTTTCCCTAAAGAACTCTTGAGGAGCTCTGTTGTTGAACCATTTCAAGTAATTGAGAC ] [+] EMBL AY115556 [ GGGAGAAGGGGAAGAGGAG GAAGGAGGAGGTGTAGGGAGAAACCGGAGCAACCTCGAAGCTAGTCCAAACTAGTGGGAGGTTGTCTTTCCGGCAAGCCGGAGCCCGGAGCTATCGATCATCAAGCTTTCTACCCCGACCGACGAGGAAGAAGACGACTGATCAATTGATCAAACCGATCTCTCCATAGCTAGGTAGACAGGAGGAGAGGAGGAAGAAGAGGGGGAGAGGAGACTTATCTTGATCGATGGCGCGAGGCAAGGTGCAGCTCCGTCGCATCGAGAACCCGGTTCACCGTCAGGTCACCTTCTGCAAGCGCCGTGCCGGCCTGC TGAAGAAGGCCA GGGAGCTCTCCATCCTCTGCGAGG CCGAC ATCGGC ATC ATCATCTT CTCCGCCCACGGC AAGCTCTAC GACCT CGCCACCACCGGAACCATGGAGGAGCTGATCGAGAGGTACAAGAGTGCTAGTGGCGAACAGGCCAACGCCTGCGGCGACCAGAGAATGGACCCAAAACAGGAGGCAATGGTGCTCAAACAAGAAATCAATCTACTGCAGAAGGGCCTGAGGTACATCTATGGGAACAGGGCAAATGAACACATGACCGTTGAAGAGCTGAATGCCCTAGAGAGGTACTTAGAGATATGGATGTACAACATTCGCTCCGCAAAGATGCAGATAATGATCCAAGAGATCCAAGCACTAAAGAGCAAGGAAGGCATGTTGAAAGCTGCTAACGAAATTCTCCAAGAAAAGATAGTAGAACAGAATGGTCTGATCGACGTAGGCATGATGGTAGCAGATCAACAGAATGGGCATTTTAGTACAGTCCCACTGTTAGAAGAGATCACTAACCCACTGACTATACTGAGTGGCTATTCTACTTGTAGGGGCTCGGAGAATGGGCTATTCCTTCTAAC CTAATAATGGCCTGGGGGATACTTGTGTTCATTACTAAGGGGGAATATGGGTAATAATGCTTGGGGTGCTGgt ] [+] EMBL AU095354 [ GAAGAGGAGGAAGAAGGAGGAGGTGTAGGGAGAAACCGGAGCAACCTCGAAGCTAGTCCAAACTAGTGGGAGGTTGTCTTTCCGGCAAGCCGGAGCCCGGAGCTATCGATCATCAAGCTTTCTACCCCGACCGACGAGGAAGAAGACGACTGATCAATTGATCAAACCGATCTCTCCATAGCTAGGTAGACAGGAGGAGAGGAGGAAGAAGAGGGGGAGAGGAGACTTATCTTGATCGATGGCGCGAGGCAAGGTGCAGCTCCGTCGCATCGAGAACCCGGTTCACCGTCAGGTCACCTTCTGCAAGCGCCGTGCCGGCCTGC TGAAGAAGGCCA GGGAGCTCTCCATCCTCTGCGAGG CCGAC ATCGGC ATC ATCATCTT CTCCGCCCACGGC AAGCTCTAC GACCT CGCCANCACCGGAACCATGGAGGAGCTGATCGAGA ] [+] EMBL AB003326 [ AGGAGGTGTAGGGAGAAACCGGAGCAACCTCGAAGCTAGTCCAAACTAGTGGGAGGTTGTCTTTCCGGCAAGCCGGAGCCCGGAGCTATCGATCATCAAGCTTTCTACCCCGACCGACGAGGAAGAAGACGACTGATCAATTGATCAAACCGATCTCTCCATAGCTAGGTAGACAGGAGGAGAGGAGGAAGAAGAGGGGGAGAGGAGACTTATCTTGATCGATGGCGCGAGGCAAGGTGCAGCTCCGTCGCATCGAGAACCCGGTTCACCGTCAGGTCACCTTCTGCAAGCGCCGTGCCGGCCTGC TGAAGAAGGCCA GGGAGCTCTCCATCCTCTGCGAGG CCGAC ATCGGC ATC ATCATCTT CTCCGCCCACGGC AAGCTCTAC GACCT CGCCACCACCGGAACCATGGAGGAGCTGATCGAGAGGTACAAGAGTGCTAGTGGCGAACAGGCCAACGCCTGCGGCGACCAGAGAATGGACCCAAAACAGGAGGCAATGGTGCTCAAACAAGAAATCAATCTACTGCAGAAGGGCCTGAGGTACATCTATGGGAACAGGGCAAATGAACACATGACTGTTGAAGAGCTGAATGCCCTAGAGAGGTACTTAGAGATATGGATGTACAACATTCGCTCCGCAAAGATGCAGATAATGATCCAAGAGATCCAAGCACTAAAGAGCAAGGAAGGCATGTTGAAAGCTGCTAACGAAATTCTCCAAGAAAAGATAGTAGAACAGAATGGTCTGATCGACGTAGGCATGATGGTAGCAGATCAACAGAATGGGCATTTTAGTACAGTCCCACTGTTAGAAGAGATCACTAACCCACTGACTATACTGAGTGGCTATTCTACTTGTAGGGGCTCGGAG ATGGGCTATTCCTTCTAACACTAATAATGGCCTGGGGGATACTTGTGTTCATTACTAGTGTGTAATATGGTTAATAATGCTTGTGTTGCTGTTTGCTTTGCTATTCTGATGTACCTTATTTAGACAAGTTCCCGCAGGAAGTGTCTTTTAGTATTGTATTTGTCTTGGGCTGTGGTGCTTTGTTTTTCCCTAAAGAACTCTTGAGGAGCTCTGTTGTT ] [+] EMBL AU065432 [ AGGAGGTGTAGGGAGAAACCGGAGCAACCTCGAAGCTAGTCCAAACTAGTGGGAGGTTGTCTTTCCGGCAAGCCGGAGCCCGGAGCTATCGATCATCAAGCTTTCTACCCCGACCGACGAGGAAGAAGACGACTGATCAATTGATCAAACCGATCTCTCCATAGCTAGGTAGACAGGAGGAGAGGAGGAAGAAGAGGGGGAGAGGAGACTTATCTTGATCGATGGCGCGAGGCAAGGTGCAGCTCCGTCGCATCGAGAACCCGGTTCACCGTCA GTCACCTTCTGCAAGCGCCGTGCCGGCCTGCTTGAAGAAGGCCANGGGAGCTCTTCATCCTCTTCGAGGNCCGACAATCGGCAATCAATAATCTTNTTCCGCCCACGGCAAAGTTNTACGGACCTTNGGCAACCACCGG ACCATGGAGGAGCTta ] [+] EMBL AU164694 [ GGAGGTGTAGGGAGAAACCGGAGCAACCTCGAAGCTAGTCCAAACTAGTGGGAGGTTGTCTTTCCGGCAAGCCGGAGCCCGGAGCTATCGATCATCAAGCTTTCTACCCCGACCGACGAGGAAGAAGACGACTGATCAATTGATCAAACCGATCTCTCCATAGCTAGGTAGACAGGAGGAGAGGAGGAAGAAGAGGGGGAGAGGAGACTTATCTTGATCGATGGCGCGAGGCAAGGTGCAGCTCCGTCGCATCGAGAACCCGGTTCACCGTCA GTCACCTTCTGCAAGCGNCGTGCCGGCCTGC TGAAGAAGGCCA GGGAGCTCTCCATCCTCTTCGAGG NCGAC ATCGGC ATC ATCATCTT CTTCGNCC ] [+] EMBL AF141868 [ accaACCGGCAGGTCACCTTCTGCAAGCGCCGTGCCGGCCTGC TGAAGAAGGCCA GGGAGCTCTCCATCCTCTGCGAGG CCGAC ATCGGC ATC ATCATCTT CTCCGCCCACGGC AAGCTCTAC GACCT CGCCACCACCGGAACCATGGAGGAGCTGATCGAGAGGTACAAGAGTGCTAGTGGCGAACAGGCCAACGCCTGCGGCGACCAGAGAATGGACCCAAAACAGGAGGCAATGGTGCTCAAACAAGAAATCAATCTACTGCAGAAGGGCCTGAGGTACATCTATGGGAACAGGGCAAATGAACACATGACCGTTGAAGAGCTGAATGCCCTAGAGAGGTACTTAGAGATATGGATGTACAACATTCGCTCCGCAAAGATGCAGATAATGATCCAAGAGATCCAAGCACTAAAGAGCAAGGAAGGCATGTTGAAAGCTGCTAACGAAATTCTCCAAGAAAAGATAGTAGAACAGAATGGTCTGATCGACGTAGGCATGATGGTAGCAGATCAACAGAATGGGCATTTTAGTACAGTCCCACTGTTAGAAGAGATCACTAACCCACTGACTATACTGAGTGGCTATTCTACTTGTAGGGGCTCGGAGAATGGGCTATTCCTTCTAAC CTAATAATGGCCTGGGGGATACTTGTGTTCATTACTAAGGGGGAATATGGGTAATAATGCTTGGGGTGCTGgt ] [+] EMBL AU032614 [ ncCAGGCC CTACCT CCGCGACCAGAGANTGGACCCAAAACAGGAGGCAATGGTGCTCAAACAAG AATCATCCTACTGCAGAAGGNCCTGAGGTACATCTATGGGAACAGGGCAAATGAACACATGACTGTTGAAGAGCTGAATGCCCTAGAGAGGTACTTAGAGATATGGATGTACAACATTC CTCCGCAAAGATGCAGATAATGATCCAAGAGANCCAAGCACTAAAGAGCAAGGAAGGCATGTTGAAAGCTGCTAACGAAATTCTCCAAGAAAAGATAGTAGAACAGAATGGTCTGATCGACGTAGGCATGATGGTAGCAGATCAACAGAATGGGCATTTTAGTACAGTCCCACTGTTAGAAGAGATCACTAACCCACTGACTATACTGAGTGGCTATTCTACTTGTAGGGGCTCGGAG ATGGGCTATTCCTTCTAACACTAATAATGGCCTGGGGGATACTTGTGTTCATTACTAGTGTGTAATATGGTTAATAATGCTTGTGTTGCTGTTTGCTTTGCTATTCTGATGTACCTTATTTAGACAAGTTCCCGCAGGAAGTGTCTTTTAGTATTGTATTTGTCTTGGGCTGTGGTGCTTTGTTTTTCCCTAAAGAACTCTTGAGGAGCTCTGTTGTTGAACCATTTCAAGTAATTGAGACTATTGTTTCCTGGAACGTTTAAAAAAA ] [-] EMBL CA760365 [ GGCGACCAGAGAATGGACCCAAAACAGGAGGCAATGGTGCTCAAACAAGAAATCAATTTACTGCAGAAGGGCCTGAGGTACATCTATGGGAACAGGGCAAATGAACACATGACTGTTGAAGAGCTGAATGCCCTAGAGAGGTACTTAGAGATATGGATGTTCAACCTTCGCTCCGCAAAGATGCAGATAATGATCCAAGAGATCCCAGCCCTAAAGAGCAAGGAAGGCATGTTGAAAGCTGCTAACGAAATTTTCCAAGAAAAGATAGTAGAACAGAATGGTTTGATCGACGTAGGCATGATGGTAGCAGATCAACAGAATGGGCCTTTTAGTACAATCCCCCTGTTAGAAGAGATCCCTAACCCCCTGGCTATACTGAGTGGCTATTTTACTTGTAGGGGCTTGGAG ATGGGCTATTCCTTCTAACCCTAATAATGGCCTGGGGGATACTTGTGTTCATTACTAGTGGGTAATATGGTTAATAATGCTTTTGGTGCTGTTTGCTTTGCTATTTTGATGTACCTTATTTAGACAAGTTCCCGCAGGAAGGGTCTTTTAGTATTGTATTTGTCTTGGGCTGTGGTGCTTTGTTTTTCCCTAAAGAACTCTTGAGGAGCTCTGTTGTTGAACCCTTTCAAGTAATTGAGACTATTGTTTCCTGGAAAAAAAAAAAAAAAAAAA ] [+] EMBL AU031411 [ nGAATGGTCTGATCGACGTAGGCATGATGGTAGCAGATCNACAGAATGGGCATTTTAGTNCAGTCCCACTGTTAGAAGAGATCACTAACCCACTGACTATACTGAGTGGCTATTCTACTTGTAGGGGCTCGGAG ATGGGCTATTCCTTCTAACACTAATAATGGCCTGGGGGATACTTGTGTTCATTACTAGTGTGTAATATGGTTAATAATGCTTGTGTTGCTGTTTGCTTTGCTATTCTGATGTACCTTATTTAGACAAGTTCCCGCAGGAAGTGTCTTTTAGTATTGTATTTGTCTTGGGCTGTGGTGCTTTGTTTTTCCCTAAAGAACTCTTGAGGAGCTCTGTTGTTGAACCATTTCAAGTAATTGAGACTATTGTTTCCTGGAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_12674#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 143 fasta sequence [GACAAGTTCCCNCAGGAAGTGTCTTTTAGTATTGTATTTGTCTTGGGCTGTGGTGCTTTGTTTTTCCCTAAAGAACTCTTGAGGAGCTCTGTTGTTGAACNNTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU032238 [GACAAGTTCCCNCAGGAAGTGTCTTTTAGTATTGTATTTGTCTTGGGCTGTGGTGCTTTGTTTTTCCCTAAAGAACTCTTGAGGAGCTCTGTTGTTGAACNNTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12674#0 AGATAGGGATAAGGGGAAGAGGAGGAAGAAGGAGGAGGTGTAGGGAGAAACCGGAGCAAC 60 consensus_12674#1 ------------------------------------------------------------ consensus_12674#0 CTCGAAGCTAGTCCAAACTAGTGGGAGGTTGTCTTTCCGGCAAGCCGGAGCCCGGAGCTA 120 consensus_12674#1 ------------------------------------------------------------ consensus_12674#0 TCGATCATCAAGCTTTCTACCCCGACCGACGAGGAAGAAGACGACTGATCAATTGATCAA 180 consensus_12674#1 ------------------------------------------------------------ consensus_12674#0 ACCGATCTCTCCATAGCTAGGTAGACAGGAGGAGAGGAGGAAGAAGAGGGGGAGAGGAGA 240 consensus_12674#1 ------------------------------------------------------------ consensus_12674#0 CTTATCTTGATCGATGGCGCGAGGCAAGGTGCAGCTCCGTCGCATCGAGAACCCGGTTCA 300 consensus_12674#1 ------------------------------------------------------------ consensus_12674#0 CCGTCAGGTCACCTTCTGCAAGCGCCGTGCCGGCCTGCTGAAGAAGGCCAGGGAGCTCTC 360 consensus_12674#1 ------------------------------------------------------------ consensus_12674#0 CATCCTCTGCGAGGCCGACATCGGCATCATCATCTTCTCCGCCCACGGCAAGCTCTACGA 420 consensus_12674#1 ------------------------------------------------------------ consensus_12674#0 CCTCGCCACCACCGGAACCATGGAGGAGCTGATCGAGAGGTACAAGAGTGCTAGTGGCGA 480 consensus_12674#1 ------------------------------------------------------------ consensus_12674#0 ACAGGCCAACGCCTGCGGCGACCAGAGAATGGACCCAAAACAGGAGGCAATGGTGCTCAA 540 consensus_12674#1 ------------------------------------------------------------ consensus_12674#0 ACAAGAAATCAATCTACTGCAGAAGGGCCTGAGGTACATCTATGGGAACAGGGCAAATGA 600 consensus_12674#1 ------------------------------------------------------------ consensus_12674#0 ACACATGACTGTTGAAGAGCTGAATGCCCTAGAGAGGTACTTAGAGATATGGATGTACAA 660 consensus_12674#1 ------------------------------------------------------------ consensus_12674#0 CATTCGCTCCGCAAAGATGCAGATAATGATCCAAGAGATCCAAGCACTAAAGAGCAAGGA 720 consensus_12674#1 ------------------------------------------------------------ consensus_12674#0 AGGCATGTTGAAAGCTGCTAACGAAATTCTCCAAGAAAAGATAGTAGAACAGAATGGTCT 780 consensus_12674#1 ------------------------------------------------------------ consensus_12674#0 GATCGACGTAGGCATGATGGTAGCAGATCAACAGAATGGGCATTTTAGTACAGTCCCACT 840 consensus_12674#1 ------------------------------------------------------------ consensus_12674#0 GTTAGAAGAGATCACTAACCCACTGACTATACTGAGTGGCTATTCTACTTGTAGGGGCTC 900 consensus_12674#1 ------------------------------------------------------------ consensus_12674#0 GGAGATGGGCTATTCCTTCTAACACTAATAATGGCCTGGGGGATACTTGTGTTCATTACT 960 consensus_12674#1 ------------------------------------------------------------ consensus_12674#0 AGTGTGTAATATGGTTAATAATGCTTGTGTTGCTGTTTGCTTTGCTATTCTGATGTACCT 1020 consensus_12674#1 ------------------------------------------------------------ consensus_12674#0 TATTTAGACAAGTTCCCGCAGGAAGTGTCTTTTAGTATTGTATTTGTCTTGGGCTGTGGT 1080 consensus_12674#1 ------GACAAGTTCCCNCAGGAAGTGTCTTTTAGTATTGTATTTGTCTTGGGCTGTGGT 54 *********** ****************************************** consensus_12674#0 GCTTTGTTTTTCCCTAAAGAACTCTTGAGGAGCTCTGTTGTTGAACCATTTCAAGTAATT 1140 consensus_12674#1 GCTTTGTTTTTCCCTAAAGAACTCTTGAGGAGCTCTGTTGTTGAACNNTTTCAAAAAAAA 114 ********************************************** ****** ** consensus_12674#0 GAGACTATTGTTTCCTGGAAAAAAAAAAAAAAAAAAAAAAA 1181 consensus_12674#1 AAAA------------AAAAAAAAAAAAAAAAAAAAAAAAA 143 * * *********************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||