These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12676#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2069 fasta sequence [CGCCGTCCTTCTCCTCTCTCCCCCAATCACCGCCCACGCCACCCACCACCATGGCCTCCTCCGCCTCCGTTTCTCCCGCCGCCGCCTCCCACCACCGCCTCCTCCTCCCCTGCTCCCCGCGCCGCCTCCCCCGCCCCCGCCCCCGCCCTCGCCCGCGCCTCCTCCGCTCCGCCCGCCCCCGCCTCGTCGCCTGCCACGCCGACACCCTCCTCCCCTCCTCGTCCCCCGCCGCCGCCGCCGCCGCGTGCGCCTCCACCGCCTCCGCCAACGGGTTCTCCGACTGGCTGCGGGAGCACGGGCTGCCGCCGGGGAAGGTGGCCATCCTCGACCGACCCGTCCCCTGCTTCCGGGAGGGCAAGGACCTGCCGCTGCACTACGTCGCCGCGGGGCAGGATCTCGAGGCTGGGGATGTGGCGTTCGAGGTGCCCATGTCGCTCGTCGTCACGCTGGAGAGGGTGCTCGGAGACGAGTCCGTCGCTGAATTGCTAACAACAAACAAATTATCTGAGCTGGCATGCTTGGCTTTGTATCTCATGTATGAGAAAAAGCAAGGACAAGATTCATTTTGGTATCCTTACATTAAGGAGCTTGATCGCCAGCGAGGAAGGGGGCAATTAGCTGTTGAATCTCCACTTCTGTGGACCGAAAGTGAACTGAACTACCTGAAGGGTAGCCCCATCAAGGATGAAGTTGTTGCAAGAGACGAGGGAATAAGGCGAGAGTATAATGAGCTCGACACACTGTGGTTCATGGCAGGTTCATTGTTTCAGCAATATCCTTTTGACATACCTACCGAGGCTTTTCCATTTGAGATCTTCAAGCAAGCTTTTGTCGCAGTACAGTCTTGCGTGGTCCATTTGCAGAAAGTTAGTTTAGCTCGAAGATTTGCGCTAGTTCCATTGGGCCCACCACTATTGACCTACAAGAGCAACTGCAAAGCAATGCTGACAGCTGTTGGTGATTCTGTTCGGTTGGTTGTGGATCGACCATACAAAGCGGGAGAACCAATAATCGTCTGGTGTGGGCCACAGCCTAACTCTAGATTGCTCCTCAACTACGGTTTTATTGACGAAGATAATCCATATGATCGTATAGTGATTGAGGCATCCCTAAACATAGAAGATCCTCAGTTCCAAGAGAAGAGAATGGTTGCTCAAAGAAATGGGAAGCTGGCTATCCAAAATTTCCATGTCTGTGTGGGTAAAGAGAAGGAAACAATTGCAGAAATGCTGCCCTATTTGAGGCTAGGATACATTTCAGATCCAGATGAAATGCAATCCATACTTTCTTCAGAAGGTGATACATGTCCAGTCAGTCCATGCACAGAGCGAGCAGTACTTGACCAACTTGTTGGATACTTGGAGTCACGATTGGCTGATTATCCAACAAC-TTTGG-ATGAGG-ATGATGCT-ATGTTGGCAGATGGCAATTT-GGAACCAAAAAAGGAAGTC-GCTACTAGGCTTGTAAGATTGGAGAAGAAATTGTTGCATGGTTGTCTCCAGGCTGCTAATGAGTTCATAAATGATTTGCCTGACCACACTGTGTCACCTTGCCCTGCTCCATTTGCTCCT-GAA-TTGAAATAA-GAAAAGTAAAGCATGCAGCGAGCATTAATTCTTGCAACATGGGTGTCACTTCTAATGGTGTTCTCATTAATGATCACATCCAGTTGAAGTGCATTAGAAGGAAATCTGAAGCCTGGCTGACGGGTGTAATAGGGATTTCACTGCCCGCATGCAGATTTGGCGATTAGTTGCATTGCACACAAGTGTGCACGGATGTTTTGTTAACCTAGTGGCTTTTATATTCACTGAGTAGATTCTGTACATTCTGATGATTGACTGAGATGGTAATGCCAATGTACATGTTCAGTCTCATTTGTCAATANAGATTCTGTACATGTTATATTTTTGGGTGTTGGCATGATTTCCGCCGTTCTCTTTTCATGGCCTGTTTGATTTTTAGCTGTCTGACTACACAGCAGAGAATTGTATGCAACAGTTTACTGTGATGGCTGCCAAGGAATCGCATTCATTTGAAATGCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK068145 [CGCCGTCCTTCTCCTCTCTCCCCCAATCACCGCCCACGCCACCCACCACCATGGCCTCCTCCGCCTCCGTTTCTCCCGCCGCCGCCTCCCACCACCGCCTCCTCCTCCCCTGCTCCCCGCGCCGCCTCCCCCGCCCCCGCCCCCGCCCTCGCCCGCGCCTCCTCCGCTCCGCCCGCCCCCGCCTCGTCGCCTGCCACGCCGACACCCTCCTCCCCTCCTCGTCCCCCGCCGCCGCCGCCGCCGCGTGCGCCTCCACCGCCTCCGCCAACGGGTTCTCCGACTGGCTGCGGGAGCACGGGCTGCCGCCGGGGAAGGTGGCCATCCTCGACCGACCCGTCCCCTGCTTCCGGGAGGGCAAGGACCTGCCGCTGCACTACGTCGCCGCGGGGCAGGATCTCGAGGCTGGGGATGTGGCGTTCGAGGTGCCCATGTCGCTCGTCGTCACGCTGGAGAGGGTGCTCGGAGACGAGTCCGTCGCTGAATTGCTAACAACAAACAAATTATCTGAGCTGGCATGCTTGGCTTTGTATCTCATGTATGAGAAAAAGCAAGGACAAGATTCATTTTGGTATCCTTACATTAAGGAGCTTGATCGCCAGCGAGGAAGGGGGCAATTAGCTGTTGAATCTCCACTTCTGTGGACCGAAAGTGAACTGAACTACCTGAAGGGTAGCCCCATCAAGGATGAAGTTGTTGCAAGAGACGAGGGAATAAGGCGAGAGTATAATGAGCTCGACACACTGTGGTTCATGGCAGGTTCATTGTTTCAGCAATATCCTTTTGACATACCTACCGAGGCTTTTCCATTTGAGATCTTCAAGCAAGCTTTTGTCGCAGTACAGTCTTGCGTGGTCCATTTGCAGAAAGTTAGTTTAGCTCGAAGATTTGCGCTAGTTCCATTGGGCCCACCACTATTGACCTACAAGAGCAACTGCAAAGCAATGCTGACAGCTGTTGGTGATTCTGTTCGGTTGGTTGTGGATCGACCATACAAAGCGGGAGAACCAATAATCGTCTGGTGTGGGCCACAGCCTAACTCTAGATTGCTCCTCAACTACGGTTTTATTGACGAAGATAATCCATATGATCGTATAGTGATTGAGGCATCCCTAAACATAGAAGATCCTCAGTTCCAAGAGAAGAGAATGGTTGCTCAAAGAAATGGGAAGCTGGCTATCCAAAATTTCCATGTCTGTGTGGGTAAAGAGAAGGAAACAATTGCAGAAATGCTGCCCTATTTGAGGCTAGGATACATTTCAGATCCAGATGAAATGCAATCCATACTTTCTTCAGAAGGTGATACATGTCCAGTCAGTCCATGCACAGAGCGAGCAGTACTTGACCAACTTGTTGGATACTTGGAGTCACGATTGGCTGATTATCCAACAAC TTTGG ATGAGG ATGATGCT ATGTTGGCAGATGGCAATTT GGAACCAAAAAAGGAAGTC GCTACTAGGCTTGTAAGATTGGAGAAGAAATTGTTGCATGGTTGTCTCCAGGCTGCTAATGAGTTCATAAATGATTTGCCTGACCACACTGTGTCACCTTGCCCTGCTCCATTTGCTCCT GAA TTGAAATAA GAAAAGTAAAGCATGCAGCGAGCATTAATTCTTGCAACATGGGTGTCACTTCTAATGGTGTTCTCATTAATGATCACATCCAGTTGAAGTGCATTAGAAGGAAATCTGAAGCCTGGCTGACGGGTGTAATAGGGATTTCACTGCCCGCATGCAGATTTGGCGATTAGTTGCATTGCACACAAGTGTGCACGGATGTTTTGTTAACCTAGTGGCTTTTATATTCACTGAGTAGATTCTGTACATTCTGATGATTGACTGAGATGGTAATGCCAATGTACATGTTCAGT ] [+] EMBL CF304854 [ TCGCTCGTCGTCACGCTGGAGAGGGTGCTCGGAGACGAGTCCGTCGCTGAATTGCTAACAACAAACAAATTATCTGAGCTGGCATGCTTGGCTTTGTATCTCATGTATGAGAAAAAGCAAGGACAAGATTCATTTTGGTATCCTTACATTAAGGAGCTTGATCGCCAGCGAGGAAGGGGGCAATTAGCTGTTGAATCTCCACTTCTGTGGACCGAAAGTGAACTGAACTACCTGAAGGGTAGCCCCATCAAGGATGAAGTTGTTGCAAGAGACGAGGGAATAAGGCGAGAGTATAATGAGCTCGACACACTGTGGTTCATGGCAGGTTCATTGTTTCAGCAATATCCTTTTGACATACCTACCGAGGCTTTTCCATTTGAGATCTTCAAGCAAGCTTTTGTCGCAGTACAGTCTTGCGTGGTCCATTTGCAGAAAGTTAGTTTAGCTCGAAGATTTGCGCTAGTTCCATTGGGCCCACCACTATTGACCTACAAGAGCAACTGCAAAGCAATGCTGACAGCTGTTGGTGATTCTGTTCGGTTGGTTGTGGATCGACCATACAAAGCGGGAGAACCAATAATCGTCTGGTGTGGGCCACAGCCTAACTCTAGATTGCTCCTCAACTACGGTTTTATTGACGAAGATAATCCATATGATCGTATAGTGAT ] [+] EMBL CB653989 [ CTCGTAGTGACGCTGGAGAGGGTGCTCGGAGACGAGTCCGTCGCTGAATTGCTAACAACCAACAAATTATCTGAGCTGGCATGCTTGGCTTTGTATCTCATGTATGAGAAAAAGCAACGACAAGATTCATTTTGGTATCCTTACATTAACGAGCTTGATCGCCAGCGAGGAAGGGGGCAATTAGCTGTTGAATCTCCACTTCTGTGGACCGAAAGTGAACTGAACTACCTGAAGGGTACCCCCATCAAGGATGAAGTTGTTGCGAGAGACGAGGGAATAAGGCGAGAGTATAATGAGCTCGACACACTGTGGTTCATGGCAGGTTCCTTGTTTCAGCCATATCCTTTTGACATACCTACCGAGGCTTTTCCATTTGAGATCTTCAAGCAAGCTTTTGTCGCAGTACAGTCTTGCGTGGTCCATTTGCAGAAAGTTAGTTTAGCTCGAAGATTTGCGCTAGTTCCATTGGGCCCACCACTATT ] [+] EMBL CA757390 [ CTGTTGAATCTCCACTTCTGTGGACCGAAAGTGAACTGAACTACCTGAAGGGTAGCCCCATCAAGGATGAAGTTGTTGCAAGAGACGAGGGAATAAGGCGAGAGTATAATGAGCTCGACACACTGTGGTTCATGGCAGGTTCATTGTTTCAGCAATATCCTTTTGACATACCTACCGAGGCTTTTCCATTTGAGATCTTCAAGCAAGCTTTTGTCGCAGTACAGTCTTGCGTGGTC ] [-] EMBL CB653990 [ AGTGATTGAGGCATCCCTAAACATAGAAGATCCTCAGTTCCAAGAGAAGAGAATGGTTGCTCAAAGAAATGGGAAGCTGGCTATCCAAAATTTCCATGTCTGTGTGGGTAAAGAGAAGGAAACAATTGCAGAAATGCTGCCCTATTTGAGGCTAGGATACATTTCAGATCCAGATGAAATGCAATCCATACTTTCTTCAGAAGGTGATACATGTCCAGTCAGTCCATGCACAGAGCGAGCAGTACTTGACCAACTTGTTGGATACTTGGAGTCACGATTGGCTGATTATCCAACAAC TTTGG ATGAGG ATGATGCT ATGTTGGCAGATGGCAATTT GGAACCAAAAAAGGAAGTC GCTACTAGGCTTGTAAGATTGGAGAAGAAATTGTTGCATGGTTGTCTCCAGGCTGCTAATGAGTTCATAAATGATTTGCCTGACCACACTGTGTCACCTTGCCCTGCTCCATTTGCTCCT GAA TTGAAATAA GAAAAGTAAAGCATGCAGCGAGCATTAATTCTTGCAACATGGGTGTCACTTCTAATGGTGTTCTCATTAATGATCACATCCAGTTGAAGTGCATTAGAAGGAAATCTGAAGCCTGGCTGACGGGTGTAATAGGGATTTCACTGCCCGCATGCAGATTTGGCGATTAGTTGCATTGCACACAAGTGTGCACGGATGTTTTGTTAACCTAGTGGCTTTTATATTCACTGAGTAGATTCTGTACATTCTGATGATTGACTGAAAGGGTAATGCCAATGTACATGTTCAGTCTCATTTG ] [+] EMBL OSR18691A [ CCCTAAACATAGAAGATCCTCAGTTCCAAGAGAAGAGAATGGTTNCTCAAAGAAATGGGAAGCTGGCTATCCAAAATTTCCATGTCTGTGTGGGTAAAGAGAAGGAAACAATTGCAGAAATGCTGCCCTATTTGAGGCTAGGATACATTTCAGATCCAGATGAAATGCAATCCATACTTTCTTCAGAAGGTGATACATGTCCAGTCAGTCCATGCACAGAGCGAGCAGTACTTGACCAACTTGTTGGATACTTGGAGTCACGATTGGCTGATTATCCAACAAC TTTGG ATGAGG ATGATGCT ATGTTGGCAGATGGCAATTT GGAACCAAAAAAGGAAGTC GCTACTAGGCTTGTAAGATTGGAGAAGAAATTGTTGCATGGTNGTCTCCAGGCTGCTAATGAGTTCATAAATGA ] [+] EMBL OSR25781A [ CCCTAAACATAGAAGATCCTCAGTTCCAAGAGAAGAGAATGGTTGCTCAAAGAAATGGGAAGCTGGCTATCCAAAATTTCCATGTCTGTGTGGGTAAAGAGAAGGAAACAATTGCAGAAATGCTGCCCTATTTGAGGCTAGGATACATTTCAGATCCAGATGAAATGCAATCCATACTTTCTTCAGAAGGTGATACATGTCCAGTCAGTCCATGCACAGAGCGAGCAGTACTTGACCAACTTGTTGGATACTTGGAGTCACGATTGGCTGATTATCCAACAAC TTTGG ATGAGG ATGATGCT ATGTTGGCAGATGGCAATTT GGNNCCAAAA ] [+] EMBL C73489 [ ACTTNCTTCAGAAGGTGATACATGTCCAGTCAGTCCATGCACAGAGCGAGCAGTACTTGACCAACTTGTTGGATACTTGGAGTCACGNTTGGCTGATTATCCAACAAC TNTGG ATGAGG ATGATGCT ATGTTNGCAGATGGCAATTT GGAACCAAAAAAGGAAGTC GCTACTAGGCTTGTAAGATTGGNGAAGANATTGTTGCATGGTTGTCTCCAGGCTGCTAATGAGTTCATAAATGATTTNCCTGACCACACTGTGTCACCTTGCCCTGCTCCATTTGCTCCTGGAATTTGAAATAAGGANAAGTAAAGCATtgc ] [+] EMBL AU165726 [ CCAACAACTTTTGGAATGAGGAATGATGCTAATGTTGCCAAATGCCAATTTNGNACCCAAAAAAGGAAGTCGGCTACTAGGCTTGTAAGATTGNAAAAGAAATTGTTGCATGGTTGTCTCCAGGCTGCTAATGAGTTCATAAATGATTTGCCTGACCACACTGTGTCACCTTGCCCTGCTCCATTTGCTCCT GAA TTGAAATAA GAAAAGTAAAGCATGCAGCGAGCATTAATTCTTGCAACATGGGTGTCACTTCTAATGGTGTTCTCATTAATGATCACATCCAGTTGAAGTGCATTAGAAGGAAATNTGAAGCCTGGCTGACGGGTGTAATAGGGATTTCACTGCCCGCATGCAGATTTGGCGATTAGTTGCATTGCACACAAGTGTGCACGGATGTTTTGTTAACCTAGTGGCTTTTATATTCACTGAGTAGATTCTGTACATTCTGATGATTGACTGAGATGGTAATGCCAATGTACATGTTCAGTCTCATTTGTCAATANAGATTCTGTACATGTTATATTTTTGGGTGTTGGCATGATTTCCGCCGTTCTCTTTTCATGGCCTGTTTGATTTTTAGCTGTCTGACTACACAGCAGAGAATTGTATGCAACAGTTTACTGTGATGGCTGCCAAGGAATCGCATTCATTTGAAATGCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU162353 [ GAGCATTAATTCTTGCAACATGGGTGTCACTTCTAATGGTGTTCTCATTAATGATCACATCCAGTTGAAGTGCATTAGAAGGAAATCTGAAGCCTGGCTGACGGGTGTAATANGGATTTCACTGCCCGCATGCAGATTTGGCGATTAGTTNCATTGCACACAAGTGTGCACGGATGTTTTGTTAACCTANTGGCTTTTATATTCACTGANNAGATTCTGTACATTCTGATGATTGACTGAGATGGTAATGCCAATGTAC ] [+] EMBL AU031398 [ CGGATGTTTTGTTAACCTAGTGGCTTTTATATTCACTGNGTAGATTCTGTACATTCTGATGATTGACTGAGNTGGTAATGCCNATGTACATGTTCAGTCTCATTTGTCAATAGAGATTCTGTACNTGTTATATTTTTGGGTGTTGGCATGATTTCCGCCGTTCTCTTTTCATGGCCTGTTTGATTTTTAGCTGTCTGACTACACAGCAGAGAATTGTATGCAACAGTTTACTGTGATGGCTGCCAAGGAATCGNATTCATTTGANATGCTCCAAAAAAAAAAAAAAAAAAAAAAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||