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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12677#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1564 fasta sequence
[TCGGCTGCTGCCGCTCCTCCTCTTCCTCCCATTCTTCTACCTCGCCGGCGGACGGCGGCACACCACCACCTCCCCGCCGCGCCGGCGCGACGCGCCCTCCGGTGGTCTCCCCCCGGTCGTGCTGCTGCCGGGGAGCACCTGCAGCTAGCTGGAGGCACGCCTCACGGACGCCTACGTGCCGCCGTCGCCGCAATGCGCCGCGCACCACCACGAGGCCGACGGCCGGTGGTTCCGGCTGTGGAAGAACACCACGGAGCTGGACGACCCCGTCGTCGCGCGCGCCCTGCGTCGCCGACCAGCTCCGCCTCGTCTTCGACCACGCCGCCGGTGACTACCACGGCGTCCCCGGCGTGGAGACTCGTGTCCTGGACTTCGGCTCCACCCGTGGGTTCCTCGCCGACGTGCCCGCCAACAGTTCAGCTCGCCGAGACTACTGTCTCCCATGAATTGCGCCAACAAAAACACATCGATCGTGACGAGAAATACTGTGGTTTGTACACGCGAGCAGAGACCTCTGCATGGGAAGGCTCGTCGAGGCGTTGGAGAAAGTCGGCTACCGCGACGGCGAGACCTTGTTCGGCGCGCCGTACGACTTCCGGCAGGCGCCAGCGGCACCGGGGAAGCCGTGCAGGGCGTTCTCGCGGTTCCGGCGTCAGCTCCGGGCGCTTGTCGAGCACGCGAGCAGGACGAACGGGGACCAACCGGTCGTCCTCGTGTCGCACAGCCAGGGCGGCTACTTCGCGCTCGAGTTCATCAACCGGAGCCCCATGGCGTGGCGCCGGAGGCACGTCAAGCACTTCGTCATGGCGTCCACCGGCGCCGGCGGGTTCGTGCTGGGATTGCAGTCCCTGGTCTCCGGCGTCAGCGACGCCTCCCCGATGGGCCTTGCCGGGAGGAGCCTCGCCTGCAAGTTCACGTCGCTGCCGTCACCCAAGGTGTTCGACCGCGACACGCCGCTGGTGGTCACGCGGGACAAGAACTACCGGAGCTCCTGACGGCAGTCGGTCTCCCGGCGTACGAGGTGACGCTATACAAGACGAGGGCGCTGCCGGTGGCGATGAATTTCAGGGCGCCGGCGGTGCCGACGACGTGCATCAACGGCGTCGGCGTGCCGACGACGGAGAAGCTGGTGTACTGGGACGGCGACTTCAGCCAGGCCCCGGAGATCGTGTACGGCGACGGCGATGGGGTCGTCAATTCGGCGAGCATACTGGCTCTCGACACGGTGATCGGCGAAGATCCGAGGCAGGGGTACTACAAGTCCGTCAAGATCGCCGGCACGTCTCACGACGGCGTTGTCTCTGATGGTGCCGCCTTGGAGCGTCTGGTTAGTGAGATTCCTCGGGAGAATTTTGTGCAAGCTTCGAAGGAGGAGGATAGTCGGGTTGCTCAACTGTAATTTATCAGCACTGGGATTCCTATTAGTTGATCACTTCATTCTCTTCAACTCATCGT-ACACGGCCAGACAATAATTCCG-CCGTGTTTAGTTACAAAGTTTTTCTTCAAACTTTCAACTTTTCCATCACATCA-AAACTTTTATACACACAAAAACTTCCAACTTTTC]
[+] EMBL AK062291 [TCGGCTGCTGCCGCTCCTCCTCTTCCTCCCATTCTTCTACCTCGCCGGCGGACGGCGGCACACCACCACCTCCCCGCCGCGCCGGCGCGACGCGCCCTCCGGTGGTCTCCCCCCGGTCGTGCTGCTGCCGGGGAGCACCTGCAGCTAGCTGGAGGCACGCCTCACGGACGCCTACGTGCCGCCGTCGCCGCAATGCGCCGCGCACCACCACGAGGCCGACGGCCGGTGGTTCCGGCTGTGGAAGAACACCACGGAGCTGGACGACCCCGTCGTCGCGCGCGCCCTGCGTCGCCGACCAGCTCCGCCTCGTCTTCGACCACGCCGCCGGTGACTACCACGGCGTCCCCGGCGTGGAGACTCGTGTCCTGGACTTCGGCTCCACCCGTGGGTTCCTCGCCGACGTGCCCGCCAACAGTTCAGCTCGCCGAGACTACTGTCTCCCATGAATTGCGCCAACAAAAACACATCGATCGTGACGAGAAATACTGTGGTTTGTACACGCGAGCAGAGACCTCTGCATGGGAAGGCTCGTCGAGGCGTTGGAGAAAGTCGGCTACCGCGACGGCGAGACCTTGTTCGGCGCGCCGTACGACTTCCGGCAGGCGCCAGCGGCACCGGGGAAGCCGTGCAGGGCGTTCTCGCGGTTCCGGCGTCAGCTCCGGGCGCTTGTCGAGCACGCGAGCAGGACGAACGGGGACCAACCGGTCGTCCTCGTGTCGCACAGCCAGGGCGGCTACTTCGCGCTCGAGTTCATCAACCGGAGCCCCATGGCGTGGCGCCGGAGGCACGTCAAGCACTTCGTCATGGCGTCCACCGGCGCCGGCGGGTTCGTGCTGGGATTGCAGTCCCTGGTCTCCGGCGTCAGCGACGCCTCCCCGATGGGCCTTGCCGGGAGGAGCCTCGCCTGCAAGTTCACGTCGCTGCCGTCACCCAAGGTGTTCGACCGCGACACGCCGCTGGTGGTCACGCGGGACAAGAACTACCGGAGCTCCTGACGGCAGTCGGTCTCCCGGCGTACGAGGTGACGCTATACAAGACGAGGGCGCTGCCGGTGGCGATGAATTTCAGGGCGCCGGCGGTGCCGACGACGTGCATCAACGGCGTCGGCGTGCCGACGATGGAGAAGCTGGTGTACTGGGACGGCGACTTCAGCCAGGCCCCGGAGATCGTGTACGGCGACGGCGATGGGGTCGTCAATTCGGCGAGCATACTGGCTCTCGACACGGTGATCGGCGAAGATCCGAGGCAGGGGTACTACAAGTCCGTCAAGATCGCCGGCACGTCTCACGACGGCGTTGTCTCTGATGGTGCCGCCTTGGAGCGTCTGGTTAGTGAGATTCCTCGGGAGAATTTTGTGCAAGCTTCGAAGGAGGAGGATAGTCGGGTTGCTCAACTGTAATTTATCAGCACTGGGATTCCTATTAGTTGATCACTTCATTCTCTTCAACTCATCGT ACACGGCCAGACAATAATTCCG CCGTGTTTAGTTACAAAGTTTTTCTTCAAACTTTCAACTTTTTCATCATATCA AAACTT ]
[+] EMBL CB651125 [ CCATTCTTCTACCTCGCCGGCGGACGGCGGCACACCACCACCTCCCCGCCGCGCCGGCGCGACGCGCCCTCCGGTGGTCTCCCCCCGGTCGTGCTGCTGCCGGGGAGCACCTGCAGCTAGCTGGAGGCACGCCTCACGGACGCCTACGTGCCGCCGTCGCCGCAATGCGCCGCGCACCACCACGAGGCCGACGGCCGGTGGTTCCGGCTGTGGAAGAACACCACGGAGCTGGACGACCCCGTCGTCGCGCGCGCCCTGCGTCGCCGACCAGCTCCGCCTCGTCTTCGACCACGCCGCCGGTGACTACCACGGCGTCCCCGGCGTGGAGACTCGTGTCCTGGACTTCGGCTCCACCCGTGGGTTCCTCGCCGACGTGCCCGCCAACAGTTCAGCTCGCCGAGACTACTGTCTCCCATGAATTGCGCCAACAAAAACACATCGATCGTGACGAGAAATACTGTGGTTTGTACACGCGAGCAGAGACCTCTGCATGGGAAGGCTCGTCGAGGCGTTGGAGAAAGTCGGCTACCGCGACGGCGAGACCTTGTTCGGCGCGCCGTACGACTTCCGGCAGGCGCCAGCGGCACCGGGGAAGCCGTGCAGGGCGTTCTCGCGGTTCCGGCGTCAGCTCCGGGCGCTTGTCGAGCACGCGAGCAGGACGAACGGGGACCAACCGGTCGTCCTCGTGTCGCACAGCCAGGGCGGCTACTTCGCGCTCGAGTTCATCAACCGGAGCCCCATGGCGTGGCGCCGGAGGCACGTCAAGCACTTCGTCATGGCGTCCACCGGCTGCGGCGGGTTCGTGCTG ]
[+] EMBL CB646499 [ CCATTCTTCTACCTCGCCGGCGGACGGCGGCACACCACCACCTCCCCGCCGCGCCGGCGCGACGCGCCCTCCGGTGGTCTCCCCCCGGTCGTGCTGCTGCCGGGGAGCACCTGCAGCTAGCTGGAGGCACGCCTCACGGACGCCTACATGCCGCCGTCGCCGCAATGCGCCGCGCACCACCACGAGGCCGACGGCCGGTGGTTCCGGCTGTGGAAGAACACCACGGAGCTGGACGACCCCGTCGTCGCGCGCGCCCTGCGTCGCCGACCAGCTCCGCCTCGTCTTCGACCACGCCGCCGGTGACTACCACGGCGTCCCCGGCGTGGAGACTCGTGTCCTGGACTTCGGCTCCACCCGTGGGTTCCTCGCCGACGTGCCCGCCAACAGTTCAGCTCGCCGAGACTACTGTCTCCCATGAATTGCGCCAACAAAAACACATCGATCGTGACGAGAAATACTGTGGTTTGTACACGCGAGCAGAGACCTCTGCATGGGAAGGCTCGTCGAGGCGTTGGAGAAAGTCGGCTACCGCGACGGCGAGACCTTGATCGGCGCGCCGTACGACTTCCGGCAGGCGCCAGCGGCACCGGGGAAGCCGTGCAGGGCGTTCTCGCGGTTCCGGCGTCAGCTCCGGGCGCTTGTCGAGCACGCGAGCAGGACGAACGGGGACCCACCGGTCGTCCT ]
[+] EMBL CB635564 [ ACCGGCGATGCCGTGCAGGGCGTTCTCGCGGTTCCGGCGTCAGCTCCGGGCGCTTGTCGAGCACGCGAGCAGGACGAACGGGGACCAACCGGTCGTCCTCGTGTCGCACAGCCAGGGCGGCTACTTCGCGCTCGAGTTCATCAACCGGAGCCCCATGGCGTGGCGCCGGAGGCACGTCAAGCACTTCGTCATGGCGTCCACCGGCGCCGGCGGGTTCGTGCTGGGATTGCAGTCCCTGGTCTCCGGCGTCAGCGACGCCTCCCCGATGGGCCTTGCCGGGAGGAGCCTGGCCTGCAAGTTCACGTCGCTGCCGTCACCCAAGGTGTTCGACCGCGACACGCCGCTGGTGGTCACGCGGGACAAGAACTACCGGAGCTCCTGACGGCAGTCGGTCTCCCGGCGTACGAGGTGACGCTATACAAGACGAGGGCGCTGCCGGTGGCGATGAATTTCAGGGCGCCGGCGGTGCCGACGACGTGCATCAACGGCGTCGGCGTGCCGACGACGGAGAAGCTGGTGTACTGGGACGGCGACTTCAGCCAGGCCCCGGAGATCGTGTACGGCGACGGCGATGGGGTCGTCAATTCGGCGAGCATACTGGCTCTCGACACGGTGATCGGCGAATATCCGAGGCAGGGGTACTACAAGTCCGTCAAGATCGCCGGCACGTCTCACGACGGCGTTGTCTCTGATGGTGCCGCCTTGGAGCGTCTGGTTAGTGAGATTCCTCGGGAGAATT ]
[-] EMBL CB651126 [ CAGGACGAACGGGGACCAACCGGTCGTCCTCGTGTCGCACAGCCAGGGCGGCTACTTCGCGCTCGAGTTCATCAACCGGAGCCCCATGGCGTGGCGCCGGAGGCACGTCAAGCACTTCGTCATGGCGTCCACCGGCGCCGGCGGGTTCGTGCTGGGATTGCAGTCCCTGGTCTCCGGCGTCAGCGACGCCTCCCCGATGGGCCTTGCCGGGAGGAGCCTCGCCTGCAAGTTCACGTCGCTGCCGTCACCCAAGGTGTTCGACCGCGACACGCCGCTGGTGGTCACGCGGGACAAGAACTACCGGAGCTCCTGACGGCAGTCGGTCTCCCGGCGTACGAGGTGACGCTATACAAGACGAGGGCGCTGCCGGTGGCGATGAATTTCAGGGCGCCGGCGGTGCCGACGACGTGCATCAACGGCGTCGGCGTGCCGACGACGGAGAAGCTGGTGTACTGGGACGGCGACTTCAGCCAGGCCCCGGAGATCGTGTACGGCGACGGCGATGGGGTCGTCAATTCGGCGAGCATACTGGCTCTCGACACGGTGATCGGCGAAGATCCGAGGCAGGGGTACTACAAGTCCGTCAAGATCGCCGGCACGTCTCACGACGGCGTTGTCTCTGATGGTGCCGCCTTGGAGCGTCTGGTTAGTGAGATTCCTCGGGAGAATTTTGTGCAAGCTTCGAAGGAGGAGGATAGTCGGGTTGCTCAACTGTAATTTATCAGCACTGGGATTCCTATTAGTTGATCACTTC ]
[-] EMBL CB645296 [ CGAACGGGGACCAACCGGTCGTCCTCGTGTCGCACAGCCAGGGCGGCTACTTCGCGCTCGAGTTCATCAACCGGAGCCCCATGGCGTGGCGCCGGAGGCACGTCAAGCACTTCGTCATGGCGTCCACCGGCGCCGGCGGGTTCGTGCTGGGATTGCAGTCCCTGGTCTCCGGCGTCAGCGACGCCTCCCCGATGGGCCTTGCCGGGAGGAGCCTCGCCTGCAAGTTCACGTCGCTGCCGTCACCCAAGGTGTTCGACCGCGACACGCCGCTGGTGGTCACGCGGGACAAGAACTACCGGAGCTCCTGACGGCAGTCGGTCTCCCGGCGTACGAGGTGACGCTATACAAGACGAGGGCGCTGCCGGTGGCGATGAATTTCAGGGCGCCGGCGGTGCCGACGACGTGCATCAACGGCGTCGGCGTGCCGACGACGGAGAAGCTGGTGTACTGGGACGGCGACTTCAGCCAGGCCCCGGAGATCGTGTACGGCGACGGCGATGGGGTCGTCAATTCGGCGAGCATACTGGCTCTCGACACGGTGATCGGCGAAGATCCGAGGCAGGGGTACTACAAGTCCGTCAAGATCGCCGGCACGTCTCACGACGGCGTTGTCTCTGATGGTGCCGCCTTGGAGCGTCTGGTTAGTGAGATTCCTCGGGAGAATTTTGTGCAAGCTTCGAAGGAGGAGGATAGTCGGGTTGCTCAACTGTAATTTATCAGCACTGGGATTCCTATGAGTTGATCACTTC ]
[-] EMBL CB635565 [ CACGTCAAGCACTTCGTCATGGCGTCCACCGGCGCCGGCGGGTTCGTGCTGGGATTGCAGTCCCTGGTCTCCGGCGTCAGCGACGCCTCCCCGATGGGCCTTGCCGGGAGGAGCCTGGCCTGCAAGTTCACGTCGCTGCCGTCACCCAAGGTGTTCGACCGCGACACGCCGCTGGTGGTCACGCGGGACAAGAACTACCGGAGCTCCTGACGGCAGTCGGTCTCCCGGCGTACGAGGTGACGCTATACAAGACGAGGGCGCTGCCGGTGGCGATGAATTTCAGGGCGCCGGCGGTGCCGACGACGTGCATCAACGGCGTCGGCGTGCCGACGACGGAGAAGCTGGTGTACTGGGACGGCGACTTCAGCCAGGCCCCGGAGATCGTGTACGGCGACGGCGATGGGGTCGTCAATTCGGCGAGCATACTGGCTCTCGACACGGTGATCGGCGAAGATCCGAGGCAGGGGTACTACAAGTCCGTCAAGATCGCCGGCACGTCTCACGACGGCGTTGTCTCTGATGGTGCCGCCTTGGAGCGTCTGGTTAGTGAGATTCCTCGGGAGAATTTTGTGCAAGCTTCGAAGGAGGAGGATAGTCGGGTTGCTCAACTGTAATTTATCAGCACTGGGATTCCTATTAGTTGATCACTTCATTCTCTTCAACTCATCGT ACACGGCCAGACAATAATTCCG CCGTGTTTAGTTACAAAGGGTTTCTTCAAACTTTCAACTTTTCCATCACATCA AAAtaaaga ]
[-] EMBL CB631985 [ CGTGCTGGGATTGCAGTCCCTGGTCTCCGGCGTCAGCGACGCCTCCCCGATGGGCCTTGCCGGGAGGAGCCTGGCCTGCAAGTTCACGTCGCTGCCGTCACCCAAGGTGTTCGACCGCGACACGCCGCTGGTGGTCACGCGGGACAAGAACTACCGGAGCTCCTGACGGCAGTCGGTCTCCCGGCGTACGAGGTGACGCTATACAAGACGAGGGCGCTGCCGGTGGCGATGAATTTCAGGGCGCCGGCGGTGCCGACGACGTGCATCAACGGCGTCGGCGTGCCGACGACGGAGAAGCTGGTGTACTGGGACGGCGACTTCAGCCAGGCCCCGGAGATCGTGTACGGCGACGGCGATGGGGTCGTCAATTCGGCGAGCATACTGGCTCTCGACACGGTGATCGGCGAAGATCCGAGGCAGGGGTACTACAAGTCCGTCAAGATCGCCGGCACGTCTCACGACGGCGTTGTCTCTGATGGTGCCGCCTTGGAGCGTCTGGTTAGTGAGATTCCTCGGGAGAATTTTGTGCAAGCTTCGAAGGAGGAGGATAGTCGGGTTGCTCAACTGTAATTTATCAGCACTGGGATTCCTATTAGTTGATCACTTCATTCTCTTCAACTCATCGT ACACGGCCAGACAATAATTCCG CCGTGTTTAGTTACAAAGTTTTTCTTCAAACTTTCAACTTTTCCATCACATCA AAACTTTTCTACACACAAAAACTTCCAACTTTTC]
[-] EMBL CB631984 [ CAAGAACTACCGGAGCTCCGGACGGCAGTCGGTCTCCCGACGTACGAGGTGACGCTATACAAGACGAGGGCGCTCCCGGTGGCGATGAATTTCAGGGCGCCGGCGGTGCCGACGACGTGCATCAACGGCGTCGGCGTGCCGACGACGGAGAAGCTGGTGTACTGGGACGGCGACTTCAGCCAGGCCCCGGAGATCGTGTACGGCGACGGCGATGGGGTCGTCAATTCGGCGAGCATACTGGCTCTCGACACGGTGATCGGCGAAGATCCGAGGCAGGGGTACTACAAGTCCGTCAAGATCTCCGGCACGTCTCACGACGGCGTTGTCTCTGATGGTGCCCCCTTGGAGCCTCTGGTTAGTGAGATTCCTCGGGAGAATTTTGTCCAAGCTTCGAAGGAGGAGGATAGTCGGGTTGCTCAACTGTAATTTATCAGCCCTGGGATTCCTATTAGTTGATCACTTCATTCTCTTCAACTCATTTTGGCGGGGCCAGACAATAATTCCGCCCGTGTTTAGTTACAAAGTTTTTCTTCAAACTTTCAACTTTTCCATC CCTAATGGGCTTTTGTACACAC ]
consensusID : consensus_12677#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1400 fasta sequence
[TCGATCCATGGCGACTCAACTCCCTCGGCTGCTCCCGTTACTCCTCTTTCTCCCCTTCTTCCACATCGCCGCCTCAACCTCGCCGTCCGGCCTCCACCCCGTCGTGCTGCTGCCGGACACCACCTGCAGCCAGCTCGAGGCACGCCTCACGGACGCCTACGTGCCGCCGTCGCCGCAATGCGCCGCGCACCACAAGGATCACGACGGCCGGTGGTTCCGGCTGTGGAAGAACACCACGGAGCTCGACGACCCAGCCGTTGCCCCCTGCGTCGCCGACCAGCTCCGCCTCGTCTTCGACCACGTCGCCGGCGACTACCGCAACGTCCCCGGCGTGGAGACGCGCGTCCTGGACTTCGGCTCCACCCGTGGGTTCCTCGCCGACGAGCCCGCCAACAGAAACCGGTGCATGGGAAGGCTCGTCGAGGCGTTGGAGGAACTCGGCTACCGCGACGGCGAGAACCTCTTCGGCGCGCCGTACGACTTCCGGCAGTCGCCGGTGGCGCTGGGGCAGCCATGTAGGGCGTTCTCGCGGTACAGGCAGCGGCTCCGGGCTCTCGTCGAGCACGCGAGCAGGGCGAATGGGGACAGACCGGTCGTCCTCGTGTCGCACAGCGAAGGCGGCTACTTCGCGCTCGAGTTCCTCAACCGGAGCCCCTTGCCGTGGCGGCGGAGGCACATCAAGCACTTCGTCATGGCCTCCACCGGCGCCGGCGGGTTCGTGAGGTTCATGGAGGTCGTCGCGTCCTGCGTCAGCGACGTGTCCCCGCTTGCACGCGTGAGGAGGAGCGTCCCCAGCAAGTTCACGCCGCTGCCGTCGCCCAAGGTGTTCGACCGCGACACGCCGCTGGTGGTTACGCGGGACAAGAACTACACCGCGCACGACATGCCGGCGTTCCTCGCGGCGGCGGGGCTACCGGAGTTCGAGGTGACGCTGTACGAGACGAGGGAGCTGCCCATGGCGATGAACTTCAGAGCTCCTGTTGTGCCGACGACGTGCATCAACGGCATCGGCGTGCCCACGGCGGAGAAGCTGGTGTACTGGGACGGCAACTTCGGCGAGGCCCCCGAAATCGTGTACGGCGACGGCGATGGGCTTGTCAATTCGGCGAGCATATTGGCCCTCGACACGGTGATCGGCGATGATCCGATGCAGCAGTACTACAAGTCCATCAAGATCGCCGGCATGTATCACGCCGGCGTTATCTCCGACGGTGTCGCCTTGGAGCGTTTGATCAGTGAGATTCTTCGGGAGAGTTTTGTGCAAGATTCCAAGAAGGTGGATTATCGTCGAGTTGCTCAACTCTAAGTTGATCACTTTTTCTATTCTCTTTAACTCATCGTTTAGATCAACATGTATGCGCTACTTGTAATGTATTCACTTGGTTCCACATTATAAAATG]
[+] EMBL AK059918 [TCGATCCATGGCGACTCAACTCCCTCGGCTGCTCCCGTTACTCCTCTTTCTCCCCTTCTTCCACATCGCCGCCTCAACCTCGCCGTCCGGCCTCCACCCCGTCGTGCTGCTGCCGGACACCACCTGCAGCCAGCTCGAGGCACGCCTCACGGACGCCTACGTGCCGCCGTCGCCGCAATGCGCCGCGCACCACAAGGATCACGACGGCCGGTGGTTCCGGCTGTGGAAGAACACCACGGAGCTCGACGACCCAGCCGTTGCCCCCTGCGTCGCCGACCAGCTCCGCCTCGTCTTCGACCACGTCGCCGGCGACTACCGCAACGTCCCCGGCGTGGAGACGCGCGTCCTGGACTTCGGCTCCACCCGTGGGTTCCTCGCCGACGAGCCCGCCAACAGAAACCGGTGCATGGGAAGGCTCGTCGAGGCGTTGGAGGAACTCGGCTACCGCGACGGCGAGAACCTCTTCGGCGCGCCGTACGACTTCCGGCAGTCGCCGGTGGCGCTGGGGCAGCCATGTAGGGCGTTCTCGCGGTACAGGCAGCGGCTCCGGGCTCTCGTCGAGCACGCGAGCAGGGCGAATGGGGACAGACCGGTCGTCCTCGTGTCGCACAGCGAAGGCGGCTACTTCGCGCTCGAGTTCCTCAACCGGAGCCCCTTGCCGTGGCGGCGGAGGCACATCAAGCACTTCGTCATGGCCTCCACCGGCGCCGGCGGGTTCGTGAGGTTCATGGAGGTCGTCGCGTCCTGCGTCAGCGACGTGTCCCCGCTTGCACGCGTGAGGAGGAGCGTCCCCAGCAAGTTCACGCCGCTGCCGTCGCCCAAGGTGTTCGACCGCGACACGCCGCTGGTGGTTACGCGGGACAAGAACTACACCGCGCACGACATGCCGGCGTTCCTCGCGGCGGCGGGGCTACCGGAGTTCGAGGTGACGCTGTACGAGACGAGGGAGCTGCCCATGGCGATGAACTTCAGAGCTCCTGTTGTGCCGACGACGTGCATCAACGGCATCGGCGTGCCCACGGCGGAGAAGCTGGTGTACTGGGACGGCAACTTCGGCGAGGCCCCCGAAATCGTGTACGGCGACGGCGATGGGCTTGTCAATTCGGCGAGCATATTGGCCCTCGACACGGTGATCGGCGATGATCCGATGCAGCAGTACTACAAGTCCATCAAGATCGCCGGCATGTATCACGCCGGCGTTATCTCCGACGGTGTCGCCTTGGAGCGTTTGATCAGTGAGATTCTTCGGGAGAGTTTTGTGCAAGATTCCAAGAAGGTGGATTATCGTCGAGTTGCTCAACTCTAAGTTGATCACTTTTTCTATTCTCTTTAACTCATCGTTTAGATCAACATGTATGCGCTACTTGTAATGTATTCACTTGGTTCCACATTATAAAATG]
consensusID : consensus_12677#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1287 fasta sequence
[TACGCGGCCTCGGCGTCCGGTCTCCATCCGGTCGTGCTGCTGCCGGGCGCCACGTGCAGCCAGCTCGAGGCCCGCCTCACGGACGCCTACTTGCCGCCCTCGCCGCAGTGCGCCGCCGCCGCGCCACGCGGCGCGCGCTGGTTCCGCCTGTGGAAGAACTCCACCGCGCTGGACGACCCCACCGTCGCGCCGTGCGTCGCCGACCAGCTCAGCGTGGTGTTCGACCGCGTCGCCGGCGACTACCGTGACACGCGCGGCGTCGAGACGCGCCTCCTCGACTTCGGCTCCACCCGTGGGTTCCTCGCCGACGACCCCGCCGACCGAGACCTGTGCATGGGGAGGCTCGTCGAGGCGTTGGAGAGAGTCGGTTACCGCGACGGCGAGACGCTCTTCGGCGCGCCGTACGACTTCCGGCAGCCGCCGGCGGCGCCGGGGCAGCCGTGCAGGTCGTTCTCGCGGTTCCAGCGGCGGCTCCGGGCGCTCGTCGAGCGCGCGAGCAGGACGAACGGGGGCAGGCCGGTCGTCGTCGTGTCGCACAGCCAGGGCGGCTACTTCGCGCTCGAGTTCCTCAACCGGAGCCCCATGGCGTGGCGGCGGAGGCACGTCAAGCACTTCGTCATGGCGTCCACCGGCGCCGGCGGCTTCGTGGGCTCGATGCGGTTCCTCGCCACCAGGGACGACTCCCCGCTCGGCCGCGTCGGGCGGAGCTCCGCCATCAAGTTCACGCCGCTGCCGTCGCCCAAGGTGTTCGACCGCCACACGCCGCTGGTGATCACGCGCCACAAGAACTACACCGCGGAGGACATGCCGGAGTTCATGGCGGCGGTCGGGCTACCGGCGTCCGAGGTGGCGCTGTACGAGACGCGGGCTCTTCCGGTGGCGATGAGCTTCCGAGCGCCGGTGGTGCCGACGACGTGCGTCAACGGCGGCGGCGTGCCGACGACGGAGACGCTGGTGTACTGGGACGGCGACTTCGGCAAGGACCCGCGAGTCGTGTACGGCGACGGCGACGGTGTTGTGAACTCGGCGAGCATACTGGCCCTTGACACGGTGATCGGCGACGATCCGAAGCAGGTGTACTACAGATCGGTCAAAATCGCCGGCGCGTCTCACGTCGGGGTCGTCTCGGATGCTGCCGCCTTGCGGCGTGTGATCGCTGTGATTCTTCAAGACAATTTTGTGTGAACTCGAGAAGATGGCGTCGCTAAACACTACAAATTGTACTTCGGTAGTCCAGAGTACCGGACACATCATTAATTAATTAATAGTAACAGGAAACGTGTTCTA]
[+] EMBL AK063665 [TACGCGGCCTCGGCGTCCGGTCTCCATCCGGTCGTGCTGCTGCCGGGCGCCACGTGCAGCCAGCTCGAGGCCCGCCTCACGGACGCCTACTTGCCGCCCTCGCCGCAGTGCGCCGCCGCCGCGCCACGCGGCGCGCGCTGGTTCCGCCTGTGGAAGAACTCCACCGCGCTGGACGACCCCACCGTCGCGCCGTGCGTCGCCGACCAGCTCAGCGTGGTGTTCGACCGCGTCGCCGGCGACTACCGTGACACGCGCGGCGTCGAGACGCGCCTCCTCGACTTCGGCTCCACCCGTGGGTTCCTCGCCGACGACCCCGCCGACCGAGACCTGTGCATGGGGAGGCTCGTCGAGGCGTTGGAGAGAGTCGGTTACCGCGACGGCGAGACGCTCTTCGGCGCGCCGTACGACTTCCGGCAGCCGCCGGCGGCGCCGGGGCAGCCGTGCAGGTCGTTCTCGCGGTTCCAGCGGCGGCTCCGGGCGCTCGTCGAGCGCGCGAGCAGGACGAACGGGGGCAGGCCGGTCGTCGTCGTGTCGCACAGCCAGGGCGGCTACTTCGCGCTCGAGTTCCTCAACCGGAGCCCCATGGCGTGGCGGCGGAGGCACGTCAAGCACTTCGTCATGGCGTCCACCGGCGCCGGCGGCTTCGTGGGCTCGATGCGGTTCCTCGCCACCAGGGACGACTCCCCGCTCGGCCGCGTCGGGCGGAGCTCCGCCATCAAGTTCACGCCGCTGCCGTCGCCCAAGGTGTTCGACCGCCACACGCCGCTGGTGATCACGCGCCACAAGAACTACACCGCGGAGGACATGCCGGAGTTCATGGCGGCGGTCGGGCTACCGGCGTCCGAGGTGGCGCTGTACGAGACGCGGGCTCTTCCGGTGGCGATGAGCTTCCGAGCGCCGGTGGTGCCGACGACGTGCGTCAACGGCGGCGGCGTGCCGACGACGGAGACGCTGGTGTACTGGGACGGCGACTTCGGCAAGGACCCGCGAGTCGTGTACGGCGACGGCGACGGTGTTGTGAACTCGGCGAGCATACTGGCCCTTGACACGGTGATCGGCGACGATCCGAAGCAGGTGTACTACAGATCGGTCAAAATCGCCGGCGCGTCTCACGTCGGGGTCGTCTCGGATGCTGCCGCCTTGCGGCGTGTGATCGCTGTGATTCTTCAAGACAATTTTGTGTGAACTCGAGAAGATGGCGTCGCTAAACACTACAAATTGTACTTCGGTAGTCCAGAGTACCGGACACATCATTAATTAATTAATAGTAACAGGAAACGTGTTCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12677#0 TCGGCTGCTGCCGCTCCTCCTCTTCCTCCCATTCTTCTACCTCGCCGGCGGACGGCGGCA 60
consensus_12677#1 -----------------TCGATCCATGGCGACTCAACTCCCTCGGCTGCTCCCGTTACTC 43
consensus_12677#2 ------------------------------------------------------------
consensus_12677#0 CACCACCACCTCCCCG-CCGCGCCGGCGCGACGCGCCCTCCGGT-GGTCTCCCCCCGGTC 118
consensus_12677#1 CTCTTTCTCCCCTTCTTCCACATCGCCGCCTCAACCTCGCCGTCCGGCCTCCACCCCGTC 103
consensus_12677#2 ---------------------------TACGCGGCCTCGGCGTCCGGTCTCCATCCGGTC 33
* * * ** ** **** ** ***
consensus_12677#0 GTGCTGCTGCCGGGGAGCACCTGCAGCTAGCTGGAGGCACGCCTCACGGACGCCTACGTG 178
consensus_12677#1 GTGCTGCTGCCGGACACCACCTGCAGCCAGCTCGAGGCACGCCTCACGGACGCCTACGTG 163
consensus_12677#2 GTGCTGCTGCCGGGCGCCACGTGCAGCCAGCTCGAGGCCCGCCTCACGGACGCCTACTTG 93
************* *** ****** **** ***** ****************** **
consensus_12677#0 CCGCCGTCGCCGCAATGCGCCGCGCACCACCACGAGGCCGACGGCCGGTGGTTCCGGCTG 238
consensus_12677#1 CCGCCGTCGCCGCAATGCGCCGCGCACCACAAGGATCACGACGGCCGGTGGTTCCGGCTG 223
consensus_12677#2 CCGCCCTCGCCGCAGTGCGCCGC-CGCCGCGCCA--CGCGGCGCGCGCTGGTTCCGCCTG 150
***** ******** ******** * ** * ** ** ** ******** ***
consensus_12677#0 TGGAAGAACACCACGGAGCTGGACGACCCCGTCGTCGCGCGCGCCCTGCGTCGCCGACCA 298
consensus_12677#1 TGGAAGAACACCACGGAGCTCGACGACCCAGCCGTTGC----CCCCTGCGTCGCCGACCA 279
consensus_12677#2 TGGAAGAACTCCACCGCGCTGGACGACCCCACCGTCGC----GCCGTGCGTCGCCGACCA 206
********* **** * *** ******** *** ** ** **************
consensus_12677#0 GCTCCGCCTCGTCTTCGACCACGCCGCCGGTGACTACCACGGCGTCCCCGGCGTGGAGAC 358
consensus_12677#1 GCTCCGCCTCGTCTTCGACCACGTCGCCGGCGACTACCGCAACGTCCCCGGCGTGGAGAC 339
consensus_12677#2 GCTCAGCGTGGTGTTCGACCGCGTCGCCGGCGACTACCGTGACACGCGCGGCGTCGAGAC 266
**** ** * ** ******* ** ****** ******* * * ****** *****
consensus_12677#0 TCGTGTCCTGGACTTCGGCTCCACCCGTGGGTTCCTCGCCGACGTGCCCGCCAACAGTTC 418
consensus_12677#1 GCGCGTCCTGGACTTCGGCTCCACCCGTGGGTTCCTCGCCGACGAGCCCGCCAACAG--- 396
consensus_12677#2 GCGCCTCCTCGACTTCGGCTCCACCCGTGGGTTCCTCGCCGACGACCCCGCCGACCG--- 323
** **** ********************************** ****** ** *
consensus_12677#0 AGCTCGCCGAGACTACTGTCTCCCATGAATTGCGCCAACAAAAACACATCGATCGTGACG 478
consensus_12677#1 ------------------------------------------------------------
consensus_12677#2 ------------------------------------------------------------
consensus_12677#0 AGAAATACTGTGGTTTGTACACGCGAGCAGAGACCTCTGCATGGGAAGGCTCGTCGAGGC 538
consensus_12677#1 ------------------------------AAACCGGTGCATGGGAAGGCTCGTCGAGGC 426
consensus_12677#2 ------------------------------AGACCTGTGCATGGGGAGGCTCGTCGAGGC 353
* *** ******** **************
consensus_12677#0 GTTGGAGAAAGTCGGCTACCGCGACGGCGAGACCTTGTTCGGCGCGCCGTACGACTTCCG 598
consensus_12677#1 GTTGGAGGAACTCGGCTACCGCGACGGCGAGAACCTCTTCGGCGCGCCGTACGACTTCCG 486
consensus_12677#2 GTTGGAGAGAGTCGGTTACCGCGACGGCGAGACGCTCTTCGGCGCGCCGTACGACTTCCG 413
******* * **** **************** * ***********************
consensus_12677#0 GCAGGCGCCAGCGGCACCGGGGAAGCCGTGCAGGGCGTTCTCGCGGTTCCGGCGTCAGCT 658
consensus_12677#1 GCAGTCGCCGGTGGCGCTGGGGCAGCCATGTAGGGCGTTCTCGCGGTACAGGCAGCGGCT 546
consensus_12677#2 GCAGCCGCCGGCGGCGCCGGGGCAGCCGTGCAGGTCGTTCTCGCGGTTCCAGCGGCGGCT 473
**** **** * *** * **** **** ** *** ************ * ** * ***
consensus_12677#0 CCGGGCGCTTGTCGAGCACGCGAGCAGGACGAACGGGGACCAACCGGTCGTCCTCGTGTC 718
consensus_12677#1 CCGGGCTCTCGTCGAGCACGCGAGCAGGGCGAATGGGGACAGACCGGTCGTCCTCGTGTC 606
consensus_12677#2 CCGGGCGCTCGTCGAGCGCGCGAGCAGGACGAACGGGGGCAGGCCGGTCGTCGTCGTGTC 533
****** ** ******* ********** **** **** * ********* *******
consensus_12677#0 GCACAGCCAGGGCGGCTACTTCGCGCTCGAGTTCATCAACCGGAGCCCCATGGCGTGGCG 778
consensus_12677#1 GCACAGCGAAGGCGGCTACTTCGCGCTCGAGTTCCTCAACCGGAGCCCCTTGCCGTGGCG 666
consensus_12677#2 GCACAGCCAGGGCGGCTACTTCGCGCTCGAGTTCCTCAACCGGAGCCCCATGGCGTGGCG 593
******* * ************************ ************** ** *******
consensus_12677#0 CCGGAGGCACGTCAAGCACTTCGTCATGGCGTCCACCGGCGCCGGCGGGTTCGTGCTGGG 838
consensus_12677#1 GCGGAGGCACATCAAGCACTTCGTCATGGCCTCCACCGGCGCCGGCGGGTTCGTGAGGTT 726
consensus_12677#2 GCGGAGGCACGTCAAGCACTTCGTCATGGCGTCCACCGGCGCCGGCGGCTTCGTGGGCTC 653
********* ******************* ***************** ******
consensus_12677#0 ATTGCAGTCCCTGGTCTCCGGCGTCAGCGACGCCTCCCCGATGGGCCTTGCCGGGAGGAG 898
consensus_12677#1 CATGGAGGTCGTCGCGTCCTGCGTCAGCGACGTGTCCCCGCTTGCACGCGTGAGGAGGAG 786
consensus_12677#2 GATGCGGTTCCTCGC------CACCAGGGACGACTCCCCGCTCGGCCGCGTCGGGCGGAG 707
** * * * * * *** **** ****** * * * * ** ****
consensus_12677#0 CCTCGCCTGCAAGTTCACGTCGCTGCCGTCACCCAAGGTGTTCGACCGCGACACGCCGCT 958
consensus_12677#1 CGTCCCCAGCAAGTTCACGCCGCTGCCGTCGCCCAAGGTGTTCGACCGCGACACGCCGCT 846
consensus_12677#2 CTCCGCCATCAAGTTCACGCCGCTGCCGTCGCCCAAGGTGTTCGACCGCCACACGCCGCT 767
* * ** ********** ********** ****************** **********
consensus_12677#0 GGTGGTCACGCGGGACAAGAACTAC----------------CGGAGCTCCTGACGGCAGT 1002
consensus_12677#1 GGTGGTTACGCGGGACAAGAACTACACCGCGCACGACATGCCGGCGTTCCTCGCGGCGGC 906
consensus_12677#2 GGTGATCACGCGCCACAAGAACTACACCGCGGAGGACATGCCGGAGTTCATGGCGGCGGT 827
**** * ***** *********** *** * ** * **** *
consensus_12677#0 CGGTCTCCCGGCGTACGAGGTGACGCTATACAAGACGAGGGCGCTGCCGGTGGCGATGAA 1062
consensus_12677#1 GGGGCTACCGGAGTTCGAGGTGACGCTGTACGAGACGAGGGAGCTGCCCATGGCGATGAA 966
consensus_12677#2 CGGGCTACCGGCGTCCGAGGTGGCGCTGTACGAGACGCGGGCTCTTCCGGTGGCGATGAG 887
** ** **** ** ******* **** *** ***** *** ** ** *********
consensus_12677#0 TTTCAGGGCGCCGGCGGTGCCGACGACGTGCATCAACGGCGTCGGCGTGCCGACGACGGA 1122
consensus_12677#1 CTTCAGAGCTCCTGTTGTGCCGACGACGTGCATCAACGGCATCGGCGTGCCCACGGCGGA 1026
consensus_12677#2 CTTCCGAGCGCCGGTGGTGCCGACGACGTGCGTCAACGGCGGCGGCGTGCCGACGACGGA 947
*** * ** ** * *************** ******** ********* *** ****
consensus_12677#0 GAAGCTGGTGTACTGGGACGGCGACTTCAGCCAGGCCCCGGAGATCGTGTACGGCGACGG 1182
consensus_12677#1 GAAGCTGGTGTACTGGGACGGCAACTTCGGCGAGGCCCCCGAAATCGTGTACGGCGACGG 1086
consensus_12677#2 GACGCTGGTGTACTGGGACGGCGACTTCGGCAAGGACCCGCGAGTCGTGTACGGCGACGG 1007
** ******************* ***** ** *** *** ****************
consensus_12677#0 CGATGGGGTCGTCAATTCGGCGAGCATACTGGCTCTCGACACGGTGATCGGCGAAGATCC 1242
consensus_12677#1 CGATGGGCTTGTCAATTCGGCGAGCATATTGGCCCTCGACACGGTGATCGGCGATGATCC 1146
consensus_12677#2 CGACGGTGTTGTGAACTCGGCGAGCATACTGGCCCTTGACACGGTGATCGGCGACGATCC 1067
*** ** * ** ** ************ **** ** ***************** *****
consensus_12677#0 GAGGCAGGGGTACTACAAGTCCGTCAAGATCGCCGGCACGTCTCACGACGGCGTTGTCTC 1302
consensus_12677#1 GATGCAGCAGTACTACAAGTCCATCAAGATCGCCGGCATGTATCACGCCGGCGTTATCTC 1206
consensus_12677#2 GAAGCAGGTGTACTACAGATCGGTCAAAATCGCCGGCGCGTCTCACGTCGGGGTCGTCTC 1127
** **** ******** ** **** ********* ** ***** *** ** ****
consensus_12677#0 TGATGGTGCCGCCTTGGAGCGTCTGGTTAGTGAGATTCCTCGGGAGAATTTTGTGCAAGC 1362
consensus_12677#1 CGACGGTGTCGCCTTGGAGCGTTTGATCAGTGAGATTCTTCGGGAGAGTTTTGTGCAAGA 1266
consensus_12677#2 GGATGCTGCCGCCTTGCGGCGTGTGATCGCTGTGATTCTTCAAGACAATTTTGTGTGAAC 1187
** * ** ******* **** ** * ** ***** ** ** * ******* *
consensus_12677#0 TTCGAAGGAGGAGGATA---GTCGGGTTGCTCAACTGTAATTT-ATCAGCACTGGGATTC 1418
consensus_12677#1 TTCCAAGAAGGTGGATTATCGTCGAGTTGCTCAACTCTAAGTTGATCACTTTTTCTATTC 1326
consensus_12677#2 TC--GAGAAGATGGCGT--CGCTAAACACTACAAATTGTACTTCGGTAGT-CCAGAGTAC 1242
* ** ** ** * *** * * ** * * *
consensus_12677#0 CTATTAGTTGATCACTTCATTCTCTTCAACTCATCGTACACGGCCAGACAATAATTCCGC 1478
consensus_12677#1 TCTTTAACTCATCGTTTAGATC-----AACATGT-ATGCGCTACTTGTAATGTATTCACT 1380
consensus_12677#2 CGGACACATCATTAATTAATTAATAGTAACAGGAAACGTGTTCTA--------------- 1287
* * ** ** * ***
consensus_12677#0 CGTGTTTA-GTTACAAAGTTTTTCTTCAAACTTTCAACTTTTCCATCACATCAAAACTTT 1537
consensus_12677#1 TGGTTCCACATTATAAAATG---------------------------------------- 1400
consensus_12677#2 ------------------------------------------------------------
consensus_12677#0 TATACACACAAAAACTTCCAACTTTTC 1564
consensus_12677#1 ---------------------------
consensus_12677#2 ---------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||