These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12681#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 842 fasta sequence [CCTTTTATGGAGATGTAAACCAGAGACTTCACTGGATTTTATTCCCTCTCGCGCCAAAGTTACGACATAACGTCTCGTTAAGACACGAATAAACGTCACGAATTCCAACGTTGATCGAATTTTACATGCACAAACCAGCAGCAGCAGGGTTGTGAACTTGTGACCCAAATGATATGAGATGAGATCCTTACACACATCGTCA-TGGCAATATGGCACGTATATCTAGGCGAACTTGGCGAGCTCGTCGGCGAAGGCGGCGGCGTGCGG-CTCCTCGACGCAGCGGAGCATGAGGCGGATGCCGCGCTTGGGCGCCGGCGGCCGGAGGTAGATCACCGACGCGAC-GATGTTGACGTCGTCGTTGAGCGTGAACACGTACCCGGGCTCGCCGAACCCGTAGTCCACCTCGTTGAACCCCACGCGGCTCCAGTCCGACACCGTCACCGTCCCGTAGTCCAGCGGCACGTCGTAGTGGTCGC-CGCCGC-CGCCGCCGCCGAGCCAGTCCGTGAACCGCGCCGCGAGCGCCTCCTTCGCCTCCCGCACCACGCCCACCACCTCCGCCAGCGCCGCGCCCCGCACCGCGCCGCGGTGACGGGCGATCCCCACCGGGTACACGCAGTTGCCGTAGTACCCGTCCACCGCCGGGAGAACGCCGGCGAGCAGGTGCCGCGTGCTGGCGGCGAACCCGAGGCGGACCTCGGCGTCGTCGGGGAGCGACGACGCGGCGAGCGCGCGGCACCTGAACACCACGGCGGTCACGGCGTCGAAGGTGGAGCAGGCCTGGCCGCCGCCCGTCGGGGAGGCGNTGAAGTCCTCCTTGANCCGCGCGATGGACTCCGCCTCGT] [+] EMBL CB682661 [CCTTTTATGGAGATGTAAACCAGAGACTTCACTGGATTTT CCCCCTCTCGCGCCAAAGTTACGACATAACGTCTCGTTAAGACACGAATAAACGTCACGAATTCCAACGTTGATCGAATTTTACATGCACAAACCAGCAGCAGCAGGGTTGTGAACTTGTGACCCAAATGATATGAGATGAGATCCTTACACACATCGTCA TGGCAATATGGCACGTATATCTAGGCGAACTTGGCGAGCTCGTCGGCGAAGGCGGCGGCGTGCGG CTCCTCGACGCAGCGGAGCATGAGGCGGATGCCGCGCTTGGGCGCCGGCGGCCGGAGGTAGATCACCGACGCGAC GATGTTGACGTCGTCGTTGAGCGTGAACACGTACCCGGGCTCGCCGAACCCGTAGTCCACCTCGTTGAACCCCACGCGGCTCCAGTCCGACACCGTCACCGTCCCGTAGTCCAGCGGCACGTCGTAGTGGTCGC CGCCGC CGCCGCCGCCGAGCCAGTCCGTGAACCGCGCCGCGAGCGCCTCCTTCGCCTCCCGCACCACGCCCACCACCTCCGCCAGCGCCGCGCCCCGCACCGCGCCGCGGTGACGGGCGATCCCCACCGGGTACACGCAGTTGCCGTAGTACCCGTCCACCGCCGGGAGAACGCCGGCGAGCAGGTGCCGCGTGCTGGCGGCGAACCCGAGGCGGACCTCGGCGTCGTCGGGGAGCGACGACGCGGCGAGCGCGCGGCACCTGAACACCACGGCGGTCACGGCGTCGAAGGTGGA ] [-] EMBL BI794890 [ TTTTTTTTAGATGTAAACCAGAGACTTCACGGGATTTTATTCCCTCTCGCGCCAAAGTTACGACATAACGTCTCGTTAAGACACGAATAAACGTCACGAATTCCAACG TGATCGAATTTTACATGCACAAACCAGCAGCAGCAGGG TGTGAACTTGTGACCCAAATGATATGAGATGAGATCCTTACACACATCGTCAGTGGCAATATGGCACGTATATCTAGGCGAACTTGGCGAGCTCGTCGGCGAAGGCGGCGGCGTGCGG CTCCTCGACGCAGCGGAGCATGAGGCGGATGCCGCGC TGGGCGCCGGCGGCCGGAGGTAGATCACCGACGCGAC GATGTTGACGTCGTCGTTGAGCGTGAACACGTACCCGGGCTCG CGAACCCGTAGTCCACCTCG TGAACCCCA GCGG TCCAGTCCGACACCGTCACCGTCCCGTAGTCCAGCGGCACGTCGTAGTGGTCGCGCGCCGCGCGCg ] [+] EMBL CB649892 [ AGATGTAAACCAGAGACTTCACTGGATTTTATTCCCTCTCGCGCCAAAGTTACGACATAACGTCTCGGTAAGACACGAATAAACGTCACGAATTCCAACGTTGATCGAATTTTACATGCACAAACCAGCAGCAGCAGGGTTGTGAACTTGTGACCCAAATGATATGAGATGAGATCCTTACACACATCGTCA TGGCAATATGGCACGTATATCTAGGCGAACTTGGCGAGCTCGTCGGCGAAGGCGGCGGCGTGCGG CTCCTCGACGCAGCGGAGCATGAGGCGGATGCCGCGCTTGGGCGCCGGCGGCCGGAGGTAGATCACCGACGCGAC GATGTTGACGTCGTCGTTGAGCGTGAACACGTACCCGGGCTCGCCGAACCCGTAGTCCACCTCGTTGAACCCCACGCGGCTCCAGTCCGACACCGTCACCGTCCCGTAGTCCAGCGGCACGTCGTAGTGGTCGC CGCCGC CGCCGCCGCCGAGCCAGTCCGTGAACCGCGCCGCGAGCGCCTCCTTCGCCTCCCGCACCACGCCCACCACCTCCGCCAGCGCCGCGCCCCGCACCGCGCCGCGGTGACGGGCGATCCCCACCcg ] [-] EMBL AU032331 [ ttttttnAACCAGAGACTTCACTGGATTTTATTCCCTCTCGCGCCAAAGTTACGACATAACGTCTCGTTAAGACACGAATAAACGTCACGAATTCCAACGTTGATCGAATTTTACATGCACAAACCAGCAGCAGCAGGGTTGTGAACTTGTGACCCAAATGATATGAGATGAGATCCTTACACACATCGTCA TGGCAATATGGCACGTATATCTAGGCGAACTTGGCGAGCTCGTCGGCGAANGCGGCGGCGTGCGGNCTCCTCGACGCAGCGGAGCATGAGGCGGATGCCGCGCTTNGGCGCCGGCGGCCGGANGTAGATCACCGNCGCGAC GATGTTGACG ] [+] EMBL CB667137 [ AGACTTCACTGGATTTTATTCCCTCTCGCGCCAAAGATACGACATAACGTCTCGTTAAGACACGAATAAACGTCACGAATTCCCACGCTGATCGAATTTTACATGCGCAAACCACCAGCAGCAGGGGTGTGAACTTGTGACCCCCATGATATGAGATGAGATCCTTACACACATCGTCA TGGGAATATGGGGCGTATATCTAGGCGAACTTGGCGAGCTCTTCGGCGAAAGCGGCGGCGTGCGG CTCCTCTACACACCGGAGCATGAGGCGGATGCCGCGCTTGGGCGCCCGCGGCCGGAGGTAGATCTCCGACGCGAC GATGTTGACGTCGTCGTTGAGCGTGAACACGTACCCGGGCTCGCCGAACCCGTAGACCACCTCGTTGAACCCCACGCGGGTCCAGTCCGACACCGTCACCGTCCCGTAGTCCAGCGGCACGTCGTAGTGGGCGC CGCCGC CGCCGCCGCCGAGACAGACTGTGAAAAGCGCCGCGAGAGCCTCCTTCGCCTCCCGCACCACGCCCACCACCTCTGCCAGCGCCGCGCCCCGCACCGCGCC ] [-] EMBL AU183292 [ tttTTTTATTCCCTCTCGCGCCAAAGTTACGACATAACGTCTCGTTAAGACACGAATAAACGTCACGAATTCCAACGTTGATCGAATTTTACATGCACAAACCAGCAGCAGCAGGGTTGTGAACTTGTGACCCAAATGATATGAGATGAGATCCTTACACACATCGTCA TGGCAATATGGCACGTATATCTAGGCGAACTTGGCGAGCTCGTCGGCGAAGGCGGCGGCGTGCGG CTCCTCGACGCAGCGGAGCATGAGGCGGATGCCGCGCTTGGGCGCCGGCGGCCGGAGGTAGATCACCGACGCGACTGATGTTGACGTCGTCGTTGAGCGTGAACACGTACCCGGGCTCGCCGAACCCGTAGTCCACCTCGTTGAACCCCACGCG ] [+] EMBL CB644118 [ CAGGGTTGTGAACTTGTGACCCAAATGATATGAGATGAGATCCTTACACACATCGTCA TGGCAATATGGCACGTATATCTAGGCGAACTTGGCGAGCTCTTCGGCGAAGGCGGCGGCGTGCGG CTCCTCTACGCAATGGAGCATGAGGCGGATGCCGCACTTGGGCGCCGGCTGCCGGAGGTAGATCACCGACCCCAC GATGATGACGTCGGCGTTGAGCGTGAACACTTACCCGGGCTCGCCGAACCCGTAGTCTACCTCGGTGAACCCCACGCGGCTCCAGTCCGACACC ] [-] EMBL AU032330 [ ccCGCCGCGAGCGCNTCNTTCGCCTCCCGCACNACGCCCACCACCTCCGCCAGCGCCGCGCCCCGCA CGCGCCGCGGTGACGGGCGATCCCCACCGNGTACACGCAGTTGCCGTAGTACCCGTCCACCGCCGGGAGAACGCCGGCGAGCAGGTGCCGCGTGCTGGCGGCGAACCCGAGGCGGACCTCGG GTCGTCGGGGAGCGACGACGCGGCGAGCGCGCGGCACCTGAACACCACGGCGGT ] [-] EMBL OSS16518A [ ncggaCGCGCCGCGGTTACGGNCNATCCCCACCGGGTACANGCAGTTGCCGTAGTACCCGTCCACCGCCGGGANAANGCCNGCGAGCAGGTGCCGCGTGCTGGCGGCGAANCCGAGGCGGACCTCGTCGTCGTCGGGGAGCGACGACGCNGCGAGCGCGCGGCACCTGAACACCACGGCGGTCACGGCGTCGAAGGTGGAGCAGGCCTGGCCGCCGCCCGTCGGGGAGGCGNTGAAGTCCTCCTTGANCCGCGCGATG ] [-] EMBL CF326697 [ CCTGAACACCACGGCGGTCACGGCGTCGAAGGTGGAGCAGGCCTGGCCGCCGCCCGTCGGGGAGGCGCTGAAGTCCTCCTTGATCCGCGCGATGGACTCCGCCTCGT] consensusID : consensus_12681#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 256 fasta sequence [TTTTTTTTTTAAACCAGAGACTTCACTGGGATTTTATTCCCTCTCGCGCCAAAGTTACGACATAACGTCTCGTTAAGACACGAATAAACGTCACGAATTCCAACGTTGATCGAATTTTACATGCACAAACCAGCAGCAGCAGGGTTGTGAACTTGTGACCCAAATGATATGAGATGAGATCCTTACACACATCGTCATGGCAATATGGCACGTATATCTAGGCGAAACTTGGGCGAAGACTCAGATNCAGGNCGAA] [-] EMBL AU161486 [TTTTTTTTTTAAACCAGAGACTTCACTGGGATTTTATTCCCTCTCGCGCCAAAGTTACGACATAACGTCTCGTTAAGACACGAATAAACGTCACGAATTCCAACGTTGATCGAATTTTACATGCACAAACCAGCAGCAGCAGGGTTGTGAACTTGTGACCCAAATGATATGAGATGAGATCCTTACACACATCGTCATGGCAATATGGCACGTATATCTAGGCGAAACTTGGGCGAAGACTCAGATNCAGGNCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12681#0 CCTTTTATGGAGATGTAAACCAGAGACTTCACTGG-ATTTTATTCCCTCTCGCGCCAAAG 59 consensus_12681#1 -TTTTTTT-----TTTAAACCAGAGACTTCACTGGGATTTTATTCCCTCTCGCGCCAAAG 54 **** * * ******************** ************************ consensus_12681#0 TTACGACATAACGTCTCGTTAAGACACGAATAAACGTCACGAATTCCAACGTTGATCGAA 119 consensus_12681#1 TTACGACATAACGTCTCGTTAAGACACGAATAAACGTCACGAATTCCAACGTTGATCGAA 114 ************************************************************ consensus_12681#0 TTTTACATGCACAAACCAGCAGCAGCAGGGTTGTGAACTTGTGACCCAAATGATATGAGA 179 consensus_12681#1 TTTTACATGCACAAACCAGCAGCAGCAGGGTTGTGAACTTGTGACCCAAATGATATGAGA 174 ************************************************************ consensus_12681#0 TGAGATCCTTACACACATCGTCATGGCAATATGGCACGTATATCTAGGCGAACTT--GGC 237 consensus_12681#1 TGAGATCCTTACACACATCGTCATGGCAATATGGCACGTATATCTAGGCGAAACTTGGGC 234 **************************************************** * *** consensus_12681#0 GAGCTCGTCGGCGAAGGCGGCGGCGTGCGGCTCCTCGACGCAGCGGAGCATGAGGCGGAT 297 consensus_12681#1 GAAGACTCAGATNCAGGNCGAA-------------------------------------- 256 ** * * *** * consensus_12681#0 GCCGCGCTTGGGCGCCGGCGGCCGGAGGTAGATCACCGACGCGACGATGTTGACGTCGTC 357 consensus_12681#1 ------------------------------------------------------------ consensus_12681#0 GTTGAGCGTGAACACGTACCCGGGCTCGCCGAACCCGTAGTCCACCTCGTTGAACCCCAC 417 consensus_12681#1 ------------------------------------------------------------ consensus_12681#0 GCGGCTCCAGTCCGACACCGTCACCGTCCCGTAGTCCAGCGGCACGTCGTAGTGGTCGCC 477 consensus_12681#1 ------------------------------------------------------------ consensus_12681#0 GCCGCCGCCGCCGCCGAGCCAGTCCGTGAACCGCGCCGCGAGCGCCTCCTTCGCCTCCCG 537 consensus_12681#1 ------------------------------------------------------------ consensus_12681#0 CACCACGCCCACCACCTCCGCCAGCGCCGCGCCCCGCACCGCGCCGCGGTGACGGGCGAT 597 consensus_12681#1 ------------------------------------------------------------ consensus_12681#0 CCCCACCGGGTACACGCAGTTGCCGTAGTACCCGTCCACCGCCGGGAGAACGCCGGCGAG 657 consensus_12681#1 ------------------------------------------------------------ consensus_12681#0 CAGGTGCCGCGTGCTGGCGGCGAACCCGAGGCGGACCTCGGCGTCGTCGGGGAGCGACGA 717 consensus_12681#1 ------------------------------------------------------------ consensus_12681#0 CGCGGCGAGCGCGCGGCACCTGAACACCACGGCGGTCACGGCGTCGAAGGTGGAGCAGGC 777 consensus_12681#1 ------------------------------------------------------------ consensus_12681#0 CTGGCCGCCGCCCGTCGGGGAGGCGNTGAAGTCCTCCTTGANCCGCGCGATGGACTCCGC 837 consensus_12681#1 ------------------------------------------------------------ consensus_12681#0 CTCGT 842 consensus_12681#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||