cluster # 12681

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Oryza sativa
cluster # 12681 cluster # 12681 Sequences # 11 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12681#0 length = 842 sequences # 10

consensus_12681#1 length = 256 sequences # 1

consensusID : consensus_12681#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 842
fasta sequence

                              [CCTTTTATGGAGATGTAAACCAGAGACTTCACTGGATTTTATTCCCTCTCGCGCCAAAGTTACGACATAACGTCTCGTTAAGACACGAATAAACGTCACGAATTCCAACGTTGATCGAATTTTACATGCACAAACCAGCAGCAGCAGGGTTGTGAACTTGTGACCCAAATGATATGAGATGAGATCCTTACACACATCGTCA-TGGCAATATGGCACGTATATCTAGGCGAACTTGGCGAGCTCGTCGGCGAAGGCGGCGGCGTGCGG-CTCCTCGACGCAGCGGAGCATGAGGCGGATGCCGCGCTTGGGCGCCGGCGGCCGGAGGTAGATCACCGACGCGAC-GATGTTGACGTCGTCGTTGAGCGTGAACACGTACCCGGGCTCGCCGAACCCGTAGTCCACCTCGTTGAACCCCACGCGGCTCCAGTCCGACACCGTCACCGTCCCGTAGTCCAGCGGCACGTCGTAGTGGTCGC-CGCCGC-CGCCGCCGCCGAGCCAGTCCGTGAACCGCGCCGCGAGCGCCTCCTTCGCCTCCCGCACCACGCCCACCACCTCCGCCAGCGCCGCGCCCCGCACCGCGCCGCGGTGACGGGCGATCCCCACCGGGTACACGCAGTTGCCGTAGTACCCGTCCACCGCCGGGAGAACGCCGGCGAGCAGGTGCCGCGTGCTGGCGGCGAACCCGAGGCGGACCTCGGCGTCGTCGGGGAGCGACGACGCGGCGAGCGCGCGGCACCTGAACACCACGGCGGTCACGGCGTCGAAGGTGGAGCAGGCCTGGCCGCCGCCCGTCGGGGAGGCGNTGAAGTCCTCCTTGANCCGCGCGATGGACTCCGCCTCGT]

[+] EMBL CB682661             [CCTTTTATGGAGATGTAAACCAGAGACTTCACTGGATTTT CCCCCTCTCGCGCCAAAGTTACGACATAACGTCTCGTTAAGACACGAATAAACGTCACGAATTCCAACGTTGATCGAATTTTACATGCACAAACCAGCAGCAGCAGGGTTGTGAACTTGTGACCCAAATGATATGAGATGAGATCCTTACACACATCGTCA TGGCAATATGGCACGTATATCTAGGCGAACTTGGCGAGCTCGTCGGCGAAGGCGGCGGCGTGCGG CTCCTCGACGCAGCGGAGCATGAGGCGGATGCCGCGCTTGGGCGCCGGCGGCCGGAGGTAGATCACCGACGCGAC GATGTTGACGTCGTCGTTGAGCGTGAACACGTACCCGGGCTCGCCGAACCCGTAGTCCACCTCGTTGAACCCCACGCGGCTCCAGTCCGACACCGTCACCGTCCCGTAGTCCAGCGGCACGTCGTAGTGGTCGC CGCCGC CGCCGCCGCCGAGCCAGTCCGTGAACCGCGCCGCGAGCGCCTCCTTCGCCTCCCGCACCACGCCCACCACCTCCGCCAGCGCCGCGCCCCGCACCGCGCCGCGGTGACGGGCGATCCCCACCGGGTACACGCAGTTGCCGTAGTACCCGTCCACCGCCGGGAGAACGCCGGCGAGCAGGTGCCGCGTGCTGGCGGCGAACCCGAGGCGGACCTCGGCGTCGTCGGGGAGCGACGACGCGGCGAGCGCGCGGCACCTGAACACCACGGCGGTCACGGCGTCGAAGGTGGA                                                                       ]
[-] EMBL BI794890             [  TTTTTTTTAGATGTAAACCAGAGACTTCACGGGATTTTATTCCCTCTCGCGCCAAAGTTACGACATAACGTCTCGTTAAGACACGAATAAACGTCACGAATTCCAACG TGATCGAATTTTACATGCACAAACCAGCAGCAGCAGGG TGTGAACTTGTGACCCAAATGATATGAGATGAGATCCTTACACACATCGTCAGTGGCAATATGGCACGTATATCTAGGCGAACTTGGCGAGCTCGTCGGCGAAGGCGGCGGCGTGCGG CTCCTCGACGCAGCGGAGCATGAGGCGGATGCCGCGC TGGGCGCCGGCGGCCGGAGGTAGATCACCGACGCGAC GATGTTGACGTCGTCGTTGAGCGTGAACACGTACCCGGGCTCG CGAACCCGTAGTCCACCTCG TGAACCCCA GCGG TCCAGTCCGACACCGTCACCGTCCCGTAGTCCAGCGGCACGTCGTAGTGGTCGCGCGCCGCGCGCg                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB649892             [          AGATGTAAACCAGAGACTTCACTGGATTTTATTCCCTCTCGCGCCAAAGTTACGACATAACGTCTCGGTAAGACACGAATAAACGTCACGAATTCCAACGTTGATCGAATTTTACATGCACAAACCAGCAGCAGCAGGGTTGTGAACTTGTGACCCAAATGATATGAGATGAGATCCTTACACACATCGTCA TGGCAATATGGCACGTATATCTAGGCGAACTTGGCGAGCTCGTCGGCGAAGGCGGCGGCGTGCGG CTCCTCGACGCAGCGGAGCATGAGGCGGATGCCGCGCTTGGGCGCCGGCGGCCGGAGGTAGATCACCGACGCGAC GATGTTGACGTCGTCGTTGAGCGTGAACACGTACCCGGGCTCGCCGAACCCGTAGTCCACCTCGTTGAACCCCACGCGGCTCCAGTCCGACACCGTCACCGTCCCGTAGTCCAGCGGCACGTCGTAGTGGTCGC CGCCGC CGCCGCCGCCGAGCCAGTCCGTGAACCGCGCCGCGAGCGCCTCCTTCGCCTCCCGCACCACGCCCACCACCTCCGCCAGCGCCGCGCCCCGCACCGCGCCGCGGTGACGGGCGATCCCCACCcg                                                                                                                                                                                                                                            ]
[-] EMBL AU032331             [          ttttttnAACCAGAGACTTCACTGGATTTTATTCCCTCTCGCGCCAAAGTTACGACATAACGTCTCGTTAAGACACGAATAAACGTCACGAATTCCAACGTTGATCGAATTTTACATGCACAAACCAGCAGCAGCAGGGTTGTGAACTTGTGACCCAAATGATATGAGATGAGATCCTTACACACATCGTCA TGGCAATATGGCACGTATATCTAGGCGAACTTGGCGAGCTCGTCGGCGAANGCGGCGGCGTGCGGNCTCCTCGACGCAGCGGAGCATGAGGCGGATGCCGCGCTTNGGCGCCGGCGGCCGGANGTAGATCACCGNCGCGAC GATGTTGACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB667137             [                       AGACTTCACTGGATTTTATTCCCTCTCGCGCCAAAGATACGACATAACGTCTCGTTAAGACACGAATAAACGTCACGAATTCCCACGCTGATCGAATTTTACATGCGCAAACCACCAGCAGCAGGGGTGTGAACTTGTGACCCCCATGATATGAGATGAGATCCTTACACACATCGTCA TGGGAATATGGGGCGTATATCTAGGCGAACTTGGCGAGCTCTTCGGCGAAAGCGGCGGCGTGCGG CTCCTCTACACACCGGAGCATGAGGCGGATGCCGCGCTTGGGCGCCCGCGGCCGGAGGTAGATCTCCGACGCGAC GATGTTGACGTCGTCGTTGAGCGTGAACACGTACCCGGGCTCGCCGAACCCGTAGACCACCTCGTTGAACCCCACGCGGGTCCAGTCCGACACCGTCACCGTCCCGTAGTCCAGCGGCACGTCGTAGTGGGCGC CGCCGC CGCCGCCGCCGAGACAGACTGTGAAAAGCGCCGCGAGAGCCTCCTTCGCCTCCCGCACCACGCCCACCACCTCTGCCAGCGCCGCGCCCCGCACCGCGCC                                                                                                                                                                                                                                                                    ]
[-] EMBL AU183292             [                                 tttTTTTATTCCCTCTCGCGCCAAAGTTACGACATAACGTCTCGTTAAGACACGAATAAACGTCACGAATTCCAACGTTGATCGAATTTTACATGCACAAACCAGCAGCAGCAGGGTTGTGAACTTGTGACCCAAATGATATGAGATGAGATCCTTACACACATCGTCA TGGCAATATGGCACGTATATCTAGGCGAACTTGGCGAGCTCGTCGGCGAAGGCGGCGGCGTGCGG CTCCTCGACGCAGCGGAGCATGAGGCGGATGCCGCGCTTGGGCGCCGGCGGCCGGAGGTAGATCACCGACGCGACTGATGTTGACGTCGTCGTTGAGCGTGAACACGTACCCGGGCTCGCCGAACCCGTAGTCCACCTCGTTGAACCCCACGCG                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB644118             [                                                                                                                                                CAGGGTTGTGAACTTGTGACCCAAATGATATGAGATGAGATCCTTACACACATCGTCA TGGCAATATGGCACGTATATCTAGGCGAACTTGGCGAGCTCTTCGGCGAAGGCGGCGGCGTGCGG CTCCTCTACGCAATGGAGCATGAGGCGGATGCCGCACTTGGGCGCCGGCTGCCGGAGGTAGATCACCGACCCCAC GATGATGACGTCGGCGTTGAGCGTGAACACTTACCCGGGCTCGCCGAACCCGTAGTCTACCTCGGTGAACCCCACGCGGCTCCAGTCCGACACC                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL AU032330             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ccCGCCGCGAGCGCNTCNTTCGCCTCCCGCACNACGCCCACCACCTCCGCCAGCGCCGCGCCCCGCA CGCGCCGCGGTGACGGGCGATCCCCACCGNGTACACGCAGTTGCCGTAGTACCCGTCCACCGCCGGGAGAACGCCGGCGAGCAGGTGCCGCGTGCTGGCGGCGAACCCGAGGCGGACCTCGG GTCGTCGGGGAGCGACGACGCGGCGAGCGCGCGGCACCTGAACACCACGGCGGT                                                                                         ]
[-] EMBL OSS16518A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ncggaCGCGCCGCGGTTACGGNCNATCCCCACCGGGTACANGCAGTTGCCGTAGTACCCGTCCACCGCCGGGANAANGCCNGCGAGCAGGTGCCGCGTGCTGGCGGCGAANCCGAGGCGGACCTCGTCGTCGTCGGGGAGCGACGACGCNGCGAGCGCGCGGCACCTGAACACCACGGCGGTCACGGCGTCGAAGGTGGAGCAGGCCTGGCCGCCGCCCGTCGGGGAGGCGNTGAAGTCCTCCTTGANCCGCGCGATG             ]
[-] EMBL CF326697             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CCTGAACACCACGGCGGTCACGGCGTCGAAGGTGGAGCAGGCCTGGCCGCCGCCCGTCGGGGAGGCGCTGAAGTCCTCCTTGATCCGCGCGATGGACTCCGCCTCGT]




>consensus_12681#0
CCTTTTATGGAGATGTAAACCAGAGACTTCACTGGATTTTATTCCCTCTCGCGCCAAAGT
TACGACATAACGTCTCGTTAAGACACGAATAAACGTCACGAATTCCAACGTTGATCGAAT
TTTACATGCACAAACCAGCAGCAGCAGGGTTGTGAACTTGTGACCCAAATGATATGAGAT
GAGATCCTTACACACATCGTCATGGCAATATGGCACGTATATCTAGGCGAACTTGGCGAG
CTCGTCGGCGAAGGCGGCGGCGTGCGGCTCCTCGACGCAGCGGAGCATGAGGCGGATGCC
GCGCTTGGGCGCCGGCGGCCGGAGGTAGATCACCGACGCGACGATGTTGACGTCGTCGTT
GAGCGTGAACACGTACCCGGGCTCGCCGAACCCGTAGTCCACCTCGTTGAACCCCACGCG
GCTCCAGTCCGACACCGTCACCGTCCCGTAGTCCAGCGGCACGTCGTAGTGGTCGCCGCC
GCCGCCGCCGCCGAGCCAGTCCGTGAACCGCGCCGCGAGCGCCTCCTTCGCCTCCCGCAC
CACGCCCACCACCTCCGCCAGCGCCGCGCCCCGCACCGCGCCGCGGTGACGGGCGATCCC
CACCGGGTACACGCAGTTGCCGTAGTACCCGTCCACCGCCGGGAGAACGCCGGCGAGCAG
GTGCCGCGTGCTGGCGGCGAACCCGAGGCGGACCTCGGCGTCGTCGGGGAGCGACGACGC
GGCGAGCGCGCGGCACCTGAACACCACGGCGGTCACGGCGTCGAAGGTGGAGCAGGCCTG
GCCGCCGCCCGTCGGGGAGGCGNTGAAGTCCTCCTTGANCCGCGCGATGGACTCCGCCTC
GT

consensusID : consensus_12681#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 256
fasta sequence

                              [TTTTTTTTTTAAACCAGAGACTTCACTGGGATTTTATTCCCTCTCGCGCCAAAGTTACGACATAACGTCTCGTTAAGACACGAATAAACGTCACGAATTCCAACGTTGATCGAATTTTACATGCACAAACCAGCAGCAGCAGGGTTGTGAACTTGTGACCCAAATGATATGAGATGAGATCCTTACACACATCGTCATGGCAATATGGCACGTATATCTAGGCGAAACTTGGGCGAAGACTCAGATNCAGGNCGAA]

[-] EMBL AU161486             [TTTTTTTTTTAAACCAGAGACTTCACTGGGATTTTATTCCCTCTCGCGCCAAAGTTACGACATAACGTCTCGTTAAGACACGAATAAACGTCACGAATTCCAACGTTGATCGAATTTTACATGCACAAACCAGCAGCAGCAGGGTTGTGAACTTGTGACCCAAATGATATGAGATGAGATCCTTACACACATCGTCATGGCAATATGGCACGTATATCTAGGCGAAACTTGGGCGAAGACTCAGATNCAGGNCGAA]




>consensus_12681#1
TTTTTTTTTTAAACCAGAGACTTCACTGGGATTTTATTCCCTCTCGCGCCAAAGTTACGA
CATAACGTCTCGTTAAGACACGAATAAACGTCACGAATTCCAACGTTGATCGAATTTTAC
ATGCACAAACCAGCAGCAGCAGGGTTGTGAACTTGTGACCCAAATGATATGAGATGAGAT
CCTTACACACATCGTCATGGCAATATGGCACGTATATCTAGGCGAAACTTGGGCGAAGAC
TCAGATNCAGGNCGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12681#0      CCTTTTATGGAGATGTAAACCAGAGACTTCACTGG-ATTTTATTCCCTCTCGCGCCAAAG 59
consensus_12681#1      -TTTTTTT-----TTTAAACCAGAGACTTCACTGGGATTTTATTCCCTCTCGCGCCAAAG 54
                         **** *     * ******************** ************************

consensus_12681#0      TTACGACATAACGTCTCGTTAAGACACGAATAAACGTCACGAATTCCAACGTTGATCGAA 119
consensus_12681#1      TTACGACATAACGTCTCGTTAAGACACGAATAAACGTCACGAATTCCAACGTTGATCGAA 114
                       ************************************************************

consensus_12681#0      TTTTACATGCACAAACCAGCAGCAGCAGGGTTGTGAACTTGTGACCCAAATGATATGAGA 179
consensus_12681#1      TTTTACATGCACAAACCAGCAGCAGCAGGGTTGTGAACTTGTGACCCAAATGATATGAGA 174
                       ************************************************************

consensus_12681#0      TGAGATCCTTACACACATCGTCATGGCAATATGGCACGTATATCTAGGCGAACTT--GGC 237
consensus_12681#1      TGAGATCCTTACACACATCGTCATGGCAATATGGCACGTATATCTAGGCGAAACTTGGGC 234
                       ****************************************************  *  ***

consensus_12681#0      GAGCTCGTCGGCGAAGGCGGCGGCGTGCGGCTCCTCGACGCAGCGGAGCATGAGGCGGAT 297
consensus_12681#1      GAAGACTCAGATNCAGGNCGAA-------------------------------------- 256
                       **   *   *    ***  *                                        

consensus_12681#0      GCCGCGCTTGGGCGCCGGCGGCCGGAGGTAGATCACCGACGCGACGATGTTGACGTCGTC 357
consensus_12681#1      ------------------------------------------------------------
                                                                                   

consensus_12681#0      GTTGAGCGTGAACACGTACCCGGGCTCGCCGAACCCGTAGTCCACCTCGTTGAACCCCAC 417
consensus_12681#1      ------------------------------------------------------------
                                                                                   

consensus_12681#0      GCGGCTCCAGTCCGACACCGTCACCGTCCCGTAGTCCAGCGGCACGTCGTAGTGGTCGCC 477
consensus_12681#1      ------------------------------------------------------------
                                                                                   

consensus_12681#0      GCCGCCGCCGCCGCCGAGCCAGTCCGTGAACCGCGCCGCGAGCGCCTCCTTCGCCTCCCG 537
consensus_12681#1      ------------------------------------------------------------
                                                                                   

consensus_12681#0      CACCACGCCCACCACCTCCGCCAGCGCCGCGCCCCGCACCGCGCCGCGGTGACGGGCGAT 597
consensus_12681#1      ------------------------------------------------------------
                                                                                   

consensus_12681#0      CCCCACCGGGTACACGCAGTTGCCGTAGTACCCGTCCACCGCCGGGAGAACGCCGGCGAG 657
consensus_12681#1      ------------------------------------------------------------
                                                                                   

consensus_12681#0      CAGGTGCCGCGTGCTGGCGGCGAACCCGAGGCGGACCTCGGCGTCGTCGGGGAGCGACGA 717
consensus_12681#1      ------------------------------------------------------------
                                                                                   

consensus_12681#0      CGCGGCGAGCGCGCGGCACCTGAACACCACGGCGGTCACGGCGTCGAAGGTGGAGCAGGC 777
consensus_12681#1      ------------------------------------------------------------
                                                                                   

consensus_12681#0      CTGGCCGCCGCCCGTCGGGGAGGCGNTGAAGTCCTCCTTGANCCGCGCGATGGACTCCGC 837
consensus_12681#1      ------------------------------------------------------------
                                                                                   

consensus_12681#0      CTCGT 842
consensus_12681#1      -----