These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12682#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 3035 fasta sequence [TCTCGCCCTCTCCTCCCCCTCCCCCTCCCCCTCCAGTCCCCTCGCGAAACCCTAACTGTCTCCCCCTCCTCCTCCTCCTCCTCCTCGGGGTAGATCTTCGCGCGGGCTCTCCCGCTGGGGCGGCACCGCGCGCGCCCCGCCGTGATGGCGTCGGACGGCGCGCAGATGGAGGTGGAGCGGCGGCTTCGCGACATCGGCGCCCGCTTCACCTCGCTCCCGGACGCCGACGACGAGCTGCTCAGATTAATCGAGGAGGCAGAAACCTGGTTGGCCAGGGTTGACCAGTCGCCGCCGGAGAGCATGCACAAGGCTCTCCGGCCAACAATGAGTGCTCTGATTAAGAAGGAGTTACTGGATCACAGTGTCCCTGACATAAAGCTTGCTGTTGCCTCCTGTTTAACGGAGGTTACCAGGATCACTGCCCCGGAGGCCCCCTATGACGATGATGTCATGAAGGATGTATTTACCAGAGTTGTTGAGGCCTTTGAGAAGTTGGATGATATGGAAAGCCCCTCCTATGCAAGGAGGGTTGCGATGCTTGAAACCGTTGCGAAGGTCCGGAGCTGTGTCTTGATGCTAGATCTTGACTGCGACGATCTGATACGGGACATGTTTCACCACTTCTTCAGAACCATATCCAATACTCATCAAGAGAATGTCATCACCTCGATGGAAACTGTGATGAAGTTTGTAATTGATGAGAGCGAAGATGTCCAGCAAGATATGCCATCCTGCCTGCTTCAAGATCTAGCATCTTACCTTCTGAAGAACCTTAAAAAGGAAGAAAAAGAAACTCTTCCAGCATCTTTCGAACTTGCAGAGAAGGTAATTAATAAGTGTTATGAGAAGTTAAAGCCAGTGTTTACTCCTTTACTTCGGGGCACTCCCTTGGATGAGTACAGCGAAGTTGTTACATCATTGTTCGAAGATGCTTTAGATGCTGGAGTAGCCGACAATTCTGATGCCCCTGGAAAGGATATGGTGGCTGATGGGAAATTATCTCATAAGATTGTTTCAGATGAGTCAGCTCAGGAATCATCAAAATTAGAGCAAGATGCCAATTGCCCTGGAAAAGACGGTACTCCTCCAAACAATACTTCCACTTCGGCGGTTAGCAATGGTTGTGCTTTAATAGACAGGGTCAAGTCTCCAAGTGGACCATCCTCTTCTGATAAGAAGGCTGAACTGCCTTCTGATGACAATCAGGCAAAAGACACTGATGATTTGATATCCGGTGCTAAAGAAATACCAGAACCAATCACCACAGAGCCTGAAAAGCCATCTGATCACAATTTAAAGAAAAGCCATAAACTTGATACTTCCACTGATTCTGAAGTGGTTGATCATTCTAAGGCTGTTAACAACAACGAGGATATTTTAGTCTCTAGGGAGTTATCCCCAGAGACTGATGATGGGGATAATAAGCTGCCACCAGAGACTGGGAATAGAGCTGCTGATGACAAATCGAAACATGTTGATAACACACCTGCTGGCAAGGGAAAGCGGGGCCGGCCTCCTGCATCAAAGTCGCATGAGAAGAAGAATGTTGGAAAAGGCAAAGTATCAGGTTTAGAGTCTAAAAAAGCTGACGCAGTTAGTGATTCTGGTGGAAGGGCTACAAGGCGACTAGCTAAAGATGATGATATCAAGTCTTCATTCAAAAAGACTGGTGAAGGGGAATCTTCGAAGAAGAAGCAGAAGGAAAATTTGAAACAGCAGGAAGATACTCCACCCGATGAAGACACTGATGAGGATCTCAGTTTAAAGGATATCGTATCTCCCAAGTCTTCGGCCAAAACAGGTAAAAACAAAGGCCAGGCAGGTGACAGTGGGGGCTCAAAAAGGAAACGTGCACAGGAAGCTGAAGAGACTCCCCAGCCCAAGAAGAACAAAATTCTTAAAGGAAATCTTGTTGGCTCAAGAATCAAAGTGTGGTGGCCTGATGACAGAAAGTTCTATAAAGGTGTTGTTGAGTCATTTGATGTTGCTTCAAAAAAGCACAAGGTTGTTTATGATGATGGAGATGTTGAACGCCTACACCTTAAGAATGAAAAATGGGAATTCATTGATGAGGGGCGAGACAACAATCCTGACGCATCGTCTGATATGCCGCACGGCAGAAGGGGTAGAGTTAGCTTGGGTGAGCAAACAAAGGAAGGAAAAATAGAAACACCCAGCAGTGGGAAACATCGTGGCACTGATGTCGCTGATCCTCCCAAGAAAAGAGGACGCCCTAAAGGTGTGCGCTCCAGCAATAGTTCACAAAATGATGACAGTCCTTTGAAGGGGAAAAGTGCAGAAAACGATGATGAAGATATATCCAAGACACCTAAAAGTGGCAGTGCCCTCAAGAATGAAGGTGGAAGATCATCTCGATCCACTGGCAAGACAAAGGATGGCCTGCTAAAGGGAAGCAACAAGGATGAGACTGGTAACACTAAAAGCGCAAGCAAATCAAAAAATGATGGTGGCAGCAAACACAAGGATTCAAAAGATGAAGCTAAATCCAGCGGATCAAATCCAAAAGGTGCAAGCACTCCCAAAGCTGCTGATGGATCCAAGACAAATGGTCTTTCGACCAAAAGAAAGCAAAAGGAGAAAGAAGGCGAGTCATCTGAAGAGGAAGAGCATGTGTCTGCTAAAATTTCTACTGGAAAGAAG-CGCAGAAGGAAGGCTCATAACTAATTTGCTCTGGCCTTGTGCAGTTCTTCCAAGGGGTACTTATGAGGCATGCAGTCTGAAGGTTTTTGGCATGAGCAG-CCTAGCAATTTATATGGCTTCCATCCCTTGGCTGGTTGCCTGCCAAGTCTTGCCCTAATCGACCGTCACGAAACAGCTGGTAGTTGTAGCAGTTGCAGTGGTAGTTGTAATGTAGGTGTTACTTTTGTTCCTTGTGGTCAGCTGTGAGCCTCTAGCAAATATGGTTTCTTGCTTGCTGTCGTTCAACCCTTATTAGATTGTATTTTCTGCTGGAGCTATTTGAGACGTCAATTTTGCAGCAAGCATGAATGGAGAGAAATGTCGTAGTTCAAAAA] [+] EMBL AK068612 [TCTCGCCCTCTCCTCCCCCTCCCCCTCCCCCTCCAGTCCCCTCGCGAAACCCTAACTGTCTCCCCCTCCTCCTCCTCCTCCTCCTCGGGGTAGATCTTCGCGCGGGCTCTCCCGCTGGGGCGGCACCGCGCGCGCCCCGCCGTGATGGCGTCGGACGGCGCGCAGATGGAGGTGGAGCGGCGGCTTCGCGACATCGGCGCCCGCTTCACCTCGCTCCCGGACGCCGACGACGAGCTGCTCAGATTAATCGAGGAGGCAGAAACCTGGTTGGCCAGGGTTGACCAGTCGCCGCCGGAGAGCATGCACAAGGCTCTCCGGCCAACAATGAGTGCTCTGATTAAGAAGGAGTTACTGGATCACAGTGTCCCTGACATAAAGCTTGCTGTTGCCTCCTGTTTAACGGAGGTTACCAGGATCACTGCCCCGGAGGCCCCCTATGACGATGATGTCATGAAGGATGTATTTACCAGAGTTGTTGAGGCCTTTGAGAAGTTGGATGATATGGAAAGCCCCTCCTATGCAAGGAGGGTTGCGATGCTTGAAACCGTTGCGAAGGTCCGGAGCTGTGTCTTGATGCTAGATCTTGACTGCGACGATCTGATACGGGACATGTTTCACCACTTCTTCAGAACCATATCCAATACTCATCAAGAGAATGTCATCACCTCGATGGAAACTGTGATGAAGTTTGTAATTGATGAGAGCGAAGATGTCCAGCAAGATATGCCATCCTGCCTGCTTCAAGATCTAGCATCTTACCTTCTGAAGAACCTTAAAAAGGAAGAAAAAGAAACTCTTCCAGCATCTTTCGAACTTGCAGAGAAGGTAATTAATAAGTGTTATGAGAAGTTAAAGCCAGTGTTTACTCCTTTACTTCGGGGCACTCCCTTGGATGAGTACAGCGAAGTTGTTACATCATTGTTCGAAGATGCTTTAGATGCTGGAGTAGCCGACAATTCTGATGCCCCTGGAAAGGATATGGTGGCTGATGGGAAATTATCTCATAAGATTGTTTCAGATGAGTCAGCTCAGGAATCATCAAAATTAGAGCAAGATGCCAATTGCCCTGGAAAAGACGGTACTCCTCCAAACAATACTTCCACTTCGGCGGTTAGCAATGGTTGTGCTTTAATAGACAGGGTCAAGTCTCCAAGTGGACCATCCTCTTCTGATAAGAAGGCTGAACTGCCTTCTGATGACAATCAGGCAAAAGACACTGATGATTTGATATCCGGTGCTAAAGAAATACCAGAACCAATCACCACAGAGCCTGAAAAGCCATCTGATCACAATTTAAAGAAAAGCCATAAACTTGATACTTCCACTGATTCTGAAGTGGTTGATCATTCTAAGGCTGTTAACAACAACGAGGATATTTTAGTCTCTAGGGAGTTATCCCCAGAGACTGATGATGGGGATAATAAGCTGCCACCAGAGACTGGGAATAGAGCTGCTGATGACAAATCGAAACATGTTGATAACACACCTGCTGGCAAGGGAAAGCGGGGCCGGCCTCCTGCATCAAAGTCGCATGAGAAGAAGAATGTTGGAAAAGGCAAAGTATCAGGTTTAGAGTCTAAAAAAGCTGACGCAGTTAGTGATTCTGGTGGAAGGGCTACAAGGCGACTAGCTAAAGATGATGATATCAAGTCTTCATTCAAAAAGACTGGTGAAGGGGAATCTTCGAAGAAGAAGCAGAAGGAAAATTTGAAACAGCAGGAAGATACTCCACCCGATGAAGACACTGATGAGGATCTCAGTTTAAAGGATATCGTATCTCCCAAGTCTTCGGCCAAAACAGGTAAAAACAAAGGCCAGGCAGGTGACAGTGGGGGCTCAAAAAGGAAACGTGCACAGGAAGCTGAAGAGACTCCCCAGCCCAAGAAGAACAAAATTCTTAAAGGAAATCTTGTTGGCTCAAGAATCAAAGTGTGGTGGCCTGATGACAGAAAGTTCTATAAAGGTGTTGTTGAGTCATTTGATGTTGCTTCAAAAAAGCACAAGGTTGTTTATGATGATGGAGATGTTGAACGCCTACACCTTAAGAATGAAAAATGGGAATTCATTGATGAGGGGCGAGACAACAATCCTGACGCATCGTCTGATATGCCGCACGGCAGAAGGGGTAGAGTTAGCTTGGGTGAGCAAACAAAGGAAGGAAAAATAGAAACACCCAGCAGTGGGAAACATCGTGGCACTGATGTCGCTGATCCTCCCAAGAAAAGAGGACGCCCTAAAGGTGTGCGCTCCAGCAATAGTTCACAAAATGATGACAGTCCTTTGAAGGGGAAAAGTGCAGAAAACGATGATGAAGATATATCCAAGACACCTAAAAGTGGCAGTGCCCTCAAGAATGAAGGTGGAAGATCATCTCGATCCACTGGCAAGACAAAGGATGGCCTGCTAAAGGGAAGCAACAAGGATGAGACTGGTAACACTAAAAGCGCAAGCAAATCAAAAAATGATGGTGGCAGCAAACACAAGGATTCAAAAGATGAAGCTAAATCCAGCGGATCAAATCCAAAAGGTGCAAGCACTCCCAAAGCTGCTGATGGATCCAAGACAAATGGTCTTTCGACCAAAAGAAAGCAAAAGGAGAAAGAAGGCGAGTCATCTGAAGAGGAAGAGCATGTGTCTGCTAAAATTTCTACTGGAAAGAAG CGCAGAAGGAAGGCTCATAACTAATTTGCTCTGGCCTTGTGCAGTTCTTCCAAGGGGTACTTATGAGGCATGCAGTCTGAAGGTTTTTGGCATGAGCAG CCTAGCAATTTATATGGCTTCCATCCCTTGGCTGGTTGCCTGCCAAGTCTTGCCCTAATCGACCGTCACGAAACAGCTGGTAGTTGTAGCAGTTGCAGTGGTAGTTGTAATGTAGGTGTTACTTTTGTTCCTTGTGGTCAGCTGTGAGCCTCTAGC AATATGGTTTCTTGCTTGCTGTCGTTCAACCCTTATTAGATTGTATTTTCTGCTGGAGCTATTTGAGACGTCAATTTTGCAGCAAGCATGAATGGAGAGAAAT ] [+] EMBL CB634774 [ GTGATGAAGTTTGTAATTGATGAGAGCGAAGATGTCCAGCAAGATATGCCATCCTGCCTGCTTCAAGATCTAGCATCTTACCTTCTGAAGAACCTTAAAAAGGAAGAAAAAGAAACTCTTCCAGCATCTTTTGAACTTGCAGAGAAGGTAATTAATAAGTGTTATGAGAAGTTAAAGCCAGTGTTTACTCCTTTACTTCGGGGCACTCCCTTGGATGAGTACAGCGAAGTTGTTACATCATTGTTCGAAGATGCTTTAGATGCTGGAGTAGCCGACAATTCTGATGCCCCTGGAAAGGATACGGTGGCTGATGGGAAATTATCTCATAAGATTGTTTCAGATGAGTCAGCTCAGGAATCTTCAAAATTAGAGCAAGATGCCAATTGTCCTGGAAAAGACGGTACTCCTCCAAACAATACTTCCACTTCGGCGGTTAGCAATGGTTGTGCTTTAATAGACAGGGTCAAGTCTCCAAGTGGACCATCCTCTTCTGATAAGAAGGCTGAACTGCCTTCTGATGACAATCAGGCAAAAGACACTGATGATTTGATATCCGGTGCTAAAGAAATACCAGAACCAATCACCACAGAGCCTGAAAAGCCATCTGATCACAATTTAAAGAAAAGCCATAAACTTGATACTTCCACTGATTCTGAAGTGGTTGATCATTCTAAGGCTGTTAACAACGACGAGGATATTTTAGTCTCTAGGGAG ] [+] EMBL CB640442 [ CATCCTGCCTGCTTCAAGATCTAGCATCTTACCTTCTGAAGAACCTTAAAAAGGAAGAAAAAGAAACTCTTCCAGCATCTTTCGAACTTGCAGAGAAGGTAATTAATAAGTGTTATGAGAAGTTAAAGCCAGTGTTTACTCCTTTACTTCGGGGCACTCCCTTGGATGAGTACAGCGAAGTTGTTACATCATTGTTCGAAGATGCTTTAGATGCTGGAGTAGCCGACAATTCTGATGCCCCTGGAAAGGATATGGTGGCTGATGGGAAATTATCTCATAAGATTGTTTCAGATGAGTCAGCTCAGGAATCATCAAAATTAGAGCAAGATGCCAATTGCCCTGGAAAAGACGGTACTCCTCCAAACAATACTTCCACTTCGGCGGTTAGCAATGGTTGTGCTTTAATAGACAGGGTCAAGTCTCCAAGTGGACCATCCTCTTCTGATAAGAAGGCTGAACTGCCTTCTGATGACAATCAGGCAAAAGACACTGATGATTTGATATCCGGTGCTAAAGAAATACCAGAACCAATCACCACAGAGCCTGAAAAGCCATCTGATCACAATTTAAAGAAAAGCCATAAACTTGATACTTCC ] [+] EMBL CB675537 [ TCTGAAGAACCTTAAAAAGGAAGAAAAAGAAACTCTTCCAGCATCTTTCGAACTTGCAGAGAAGGTAATTAATAAGTGTTATGAGAAGTTAAAGCCAGTGTTTACTCCTTTACTTCGGGGCACTCCCTTGGATGAGTACAGCGAAGTTGTTACATCATTGTTCGAAGATGCTTTAGATGCTGGAGTAGCCGACAATTCTGATGCCCCTGGAAAGGATATGGTGGCTGATGGGAAATTATCTCATAAGATTGTTTCAGATGAGTCAGCTCAGGAATCATCAAAATTAGAGCAAGATGCCAATTGCCCTGGAAAAGACGGTACTCCTCCAAACAATACTTCCACTTCGGCGGTTAGCAATGGTTGTGCTTTAATAGACAGGGTCAAGTCTCCAAGTGGACCATCCTCTTCTGATAAGAAGGCTGAACTGCCTTCTGATGACAATCAGGCAAAAGACACTGATGATTTGATATCCGGTGCTAAAGAAATACCAGAACCAATCACCACAGAGCCTGAAAAGCCATCTGATCACAATTTAAAGAAAAGCCATAAACTTGATACTTCCACTGATTCTGAAGTGGTTGATCATTCTAAGGCTGTTAACAACAACGAGGATATTTTAGTCTCTAGGGAGTTATCCCCAGAGACTGATGATGGGGATAATAAGCTGCCACCAGAGACTGGGAATAGAGCTGCTGATGACAAATCGAAACATGTTGATAACACACCTGCTGGCAAGGGAAAGCGGGGCCG ] [+] EMBL AK068884 [ CCAGCATCTTTCGAACTTGCAGAGAAGGTAATTAATAAGTGTTATGAGAAGTTAAAGCCAGTGTTTACTCCTTTACTTCGGGGCACTCCCTTGGATGAGTACAGCGAAGTTGTTACATCATTGTTCGAAGATGCTTTAGATGCTGGAGTAGCCGACAATTCTGATGCCCCTGGAAAGGATATGGTGGCTGATGGGAAATTATCTCATAAGATTGTTTCAGATGAGTCAGCTCAGGAATCATCAAAATTAGAGCAAGATGCCAATTGCCCTGGAAAAGACGGTACTCCTCCAAACAATACTTCCACTTCGGCGGTTAGCAATGGTTGTGCTTTAATAGACAGGGTCAAGTCTCCAAGTGGACCATCCTCTTCTGATAAGAAGGCTGAACTGCCTTCTGATGACAATCAGGCAAAAGACACTGATGATTTGATATCCGGTGCTAAAGAGATACCAGAACCAATCACCACAGAGCCTGAAAAGCCATCTGATCACAATTTAAAGAAAAGCCATAAACTTGATACTTCCACTGATTCTGAAGTGGTTGATCATTCTAAGGCTGTTAACAACAACGAGGATATTTTAGTCTCTAGGGAGTTATCCCCAGAGACTGATGATGGGGATAATAAGCTGCCACCAGAGACTGGGAATAGAGCTGCTGATGACAAATCGAAACATGTTGATAACACACCTGCTGGCAAGGGAAAGCGGGGCCGGCCTCCTGCATCAAAGTCGCATGAGAAGAAGAATGTTGGAAAAGGCAAAGTATCAGGTTTAGAGTCTAAAAAAGCTGACGCAGTTAGTGATTCTGGTGGAAGGGCTACAAGGCGACTAGCTAAAGATGATGATATCAAGTCTTCATTCAAAAAGACTGGTGAAGGGGAATCTTCGAAGAAGAAGCAGAAGGAAAATTTGAAACAGCAGGAAGATACTCCACCCGATGAAGACACTGATGAGGATCTCAGTTTAAAGGATATCGTATCTCCCAAGTCTTCGGCCAAAACAGGTAAAAACAAAGGCCAGGCAGGTGACAGTGGGGGCTCAAAAAGGAAACGTGCACAGGAAGCTGAAGAGACTCCCCAGCCCAAGAAGAACAAAATTCTTAAAGGAAATCTTGTTGGCTCAAGAATCAAAGTGTGGTGGCCTGATGACAGAAAGTTCTATAAAGGTGTTGTTGAGTCATTTGATGTTGCTTCAAAAAAGCACAAGGTTGTTTATGATGATGGAGATGTTGAACGCCTACACCTTAAGAATGAAAAATGGGAATTCATTGATGAGGGGCGAGACAACAATCCTGACGCATCGTCTGATATGCCGCACGGCGGAAGGGGTAGAGTTAGCTTGGGTGAGCAAACAAAGGAAGGAAAAATAGAAACACCCAGCAGTGGGAAACATCGTGGCACTGATGTCGCTGATCCTCCCAAGAAAAGAGGACGCCCTAAAGGTGTGCGCTCCAGCAATAGTTCACAAAATGATGACAGTCCTTTGAAGGGGAAAAGTGCAGAAAACGATGATGAAGATATATCCAAGACACCTAAAAGTGGCAGTGCCCTCAAGAATGAAGGTGGAAGATCATCTCGATCCACTGGCAAGACAAAGGATGGCCTGCTAAAGGGAAGCAACAAGGATGAGACTGGTAACACTAAAAGCGCAAGCAAATCAAAAAATGATGGTGGCAGCAAACACAAGGATTCAAAAGATGAAGCTAAATCCAGCGGATCAAATCCAAAAGGTGCAAGCACTCCCAAAGCTGCTGATGGATCCAAGACAAATGGTCTTTCGACCAAAAGAAAGCAAAAGGAGAAAGAAGGCGAGTCATCTGAAGAGGAAGAGCATGTGTCTGCTAAAATTTCTACTGGAAAGAAG CGCAGAAGGAAGGCTCATAACTAATTTGCTCTGGCCTTGTGCAGTTCTTCCAAGGGGTACTTATGAGGCATGCAGTCTGAAGGTTTTTGGCATGAGCAG CCTAGCAATTTATATGGCTTCCATCCCTTGGCTGGTTGCCTGCCAAGTCTTGCCCTAATCGACCGTCACGAAACAGCTGGTAGTTGTAGCAGTTGCAGTGGTAGTTGTAATGTAGGTGTTACTTTTGTTCCTTGTGGTCAGCTGTGAGCCTCTAGCAAATATGGTTTCTTGCTTGCTGTCGTTCAACCCTTATTAGATTGTATTTTCTGCTGGAGCTATTTGAGACGTCAATTTTGCAGCAAGCATGAATGGAGAGAAATGTCGTAGTT ] [+] EMBL OSR22261A [ AAGAAAAGCCATAAACTTGATACTTCCACTGATTCTGAAGTGGTTGATCATTCTAAGGCTGTTAACAACAACGAGGATATTTTAGTCTCTAGGGAGTTATCCCCAGAGACTGATGATGGGGATAATAAGCTGCCACCAGAGACTGGGAATAGAGCTGCTGATGACAAATCGAAACATGTTGATAACACACCTGCTGGCAAGGGAAAGCGGGGCCGGCCTCCTGCATCAAAGTCGCATGAGAAGAAGAATGTTGGAAAAGGCAAAGTATCAGGTTTAGAGTCTAAAAANGCTGACGCAGTTAGTGATTCTGGTGGAAGGGCTACAAGGCGACTAGCTAAAGATGATGATATCAAGTCTT ] [-] EMBL CB675538 [ GAAAAGAGGACGCCCTAAAGGTGTGCGCTCCAGCAATAGTTCACAAAATGATGACAGTCCTTTGAAGGGGAAAAGTGCAGAAAACGATGATGAAGATATATCCAAGACACCTAAAAGTGGCAGTGCCCTCAAGAATGAAGGTGGAAGATCATCTCGATCCACTGGCAAGACAAAGGATGGCCTGCTAAAGGGAAGCAACAAGGATGAGACTGGTAACACTAAAAGCGCAAGCAAATCAAAAAATGATGGTGGCAGCAAACACAAGGATTCAAAAGATGAAGCTAAATCCAGCGGATCAAATCCAAAAGGTGCAAGCACTCCCAAAGCTGCTGATGGATCCAAGACAAATGGTCTTTCGACCAAAAGAAAGCAAAAGGAGAAAGAAGGCGAGTCATCTGAAGAGGAAGAGCATGTGTCTGCTAAAATTTCTACTGGAAAGAAG CGCAGAAGGAAGGCTCATAACTAATTTGCTCTGGCCTTGTGCAGTTCTTCCAAGGGGTACTTATGAGGCATGCAGTCTGAAGGTTTTTGGCATGAGCAG CCTAGCAATTTATATGGCTTCCATCCCTTGGCTGGTTGCCTGCCAAGTCTTGCCCTAATCGACCGTCACGAAACAGCTGGTAGTTGTAGCAGTTGCAGTGGTAGTTGTAATGTAGGTGTTACTTTTGTTCCTTGTGGTCAGCTGTGAGCCTCTAGCAAATATGGTTTCTTGCTTGCTGTCGTTCAACCCTTATTAGATTGTATTTTCTGCTGGAGCTATTTGAGACGTCAATTTTGCA ] [-] EMBL CB634775 [ AAGTGCAGAAAACGATGATGAAGATATATCCAAGACACCTAAAAGTGGCAGTGCCCTCAAGAATGAAGGTGGAAGATCATCTCGATCCACTGGCAAGACAAAGGATGGCCTGCTAAAGGGAAGCAACAAGGATGAGACTGGTAACACTAAAAGCGCAAGCAAATCAAAAAATGATGGTGGCAGCAAACACAAGGATTCAAAAGATGAAGCTAAATCCAGCGGATCAAATCCAAAAGGTGCAAGCACTCCCAAAGCTGCTGATGGATCCAAGACAAATGGTCTTTCGACCAAAAGAAAGCAAAAGGAGAAAGAAGGCGAGTCATCTGAAGAGGAAGAGCATGTGTCTGCTAAAATTTCTACTGGAAAGAAG CGCAGAAGGAAGGCTCATAACTAATTTGCTCTGGCCTTGTGCAGTTCTTCCAAGGGGTACTTATGAGACATGCAGTCTGAAGGTTTTTGGCATGAGCAG CCTAGCAATTTATATGGCTTCCATCCCTTGGCTGGTTGCCTGCCAAGTCTTGCCCTAATCGACCGTCACGAAACAGCTGGTAGTTGTAGCAGTTGCAGTGGTAGTTGTAATGTAGGTGTTACTTTTGTTCCTTGTGGTCAGCTGTGAGCCTCTAGCAAATATGGTTTCATGCTTGCTGTCGTTCAACCCTTATTAGATTGTATTTTCTGCTGGAGCTATTTGAGACGTCAATTTTGCAGCAAGCATGAATGGAGAGAAATGTCGTA ] [+] EMBL AU031859 [ GAAAGAAGGCGANTCATCTGAAGAGGAAGAGCATGTGTCTGCTAAAATTTCTACTGGAAAGAAGCCGCAGAAGGAAGGCTCATAACTAATTTGCTCTGGCCTTGTGCAGTTCTTCCAAGGGGTACTTATGAGGCATGCAGTCTGAAGGTTTTTGGCATGAGCAGCCCTAGCAATTTATATGGCTTCCATCCCTTGGCTGGTTGCCTGCCAAGTCTTGCCCTAATCGACCGTCACGAAACAGCTGGTAGTTGTAGCAGTTGCAGTGGTAGTTGTAATGTAGGTGTTACTTTTGTTCCTTGTGGTCAGCTGTGAGCCTCTAGCAAATATGGTTTCTTGCTTGCTGTCGTTCAACCCTTATTAGATTGTATTTTCTGCTGGAGCTATTTGAGACGTCAATTTTGCAGCAAGCATGAATGGAGAGAAATGTCGTAGTTCAAAAA] consensusID : consensus_12682#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 839 fasta sequence [AAACCCTAACTGTCTCCCCCTCCTCCTCCTCCTCCTCCTCGGGGTAGATCTTCGCGCGGGCTCTCCCGCTGGGGCGGCACCGCGCGCGCCCCGCCGTGATGGCGTCGGACGGCGCGCAGATGGAGGTGGAGCGGCGGCTTCGCGACATCGGCGCCCGCTTCACCTCGCTCCCGGACGCCGACGACGAGCTGCTCAGATTAATCGAGGAGGCAGAAACCTGGTTGGCCAGGGTTGACCAGTCGCCGCCGGAGAGCATGCACAAGGCTCTCCGGCCAACAATGAGTGCTCTGATTAAGAAGGAGTTACTGGATCACAGTGTCCCTGACATAAAGCTTGCTGTTGCCTCCTGTTTAACGGAGGTTACCAGGATCACTGCCCCGGAGGCCCCCTATGACGATGATGTCATGAAGGATGTATTTACCAGAGTTGTTGAGGCCTTTGAGAAGTTGGATGATATGGAAAGCCCCTCCTATGCAAGGAGGGTTGCGATGCTTTGAAACCGTGCGAAGGCCCGGAGCTGGTCTTGATGCTAGATCTGCTGCGAGATCTGATCNGGACATGTTACCACTCTCAGACCATATCATACTATCAGAGATGCATACTCATGGACTGGAGAGTTGTATGTGANACAGATGCACAGATTGCATCTGCTGTAGACACATTACTCGAGACTAAAGGAGAAGACTTCGGTTTTGACTGAAAGGTTATGGTTGAATACCAGTCCTATTGGCACTGCATCGGAAACAATTTTCTTGAATTTGGGGCCCCCTCCGGGGGGGAGGTTATTTAATTGGTGATATAATGGCGCTTAAGAGTATAACAAAGCTTGGGGGAAGCGC] [+] EMBL AW155198 [AAACCCTAACTGTCTCCCCCTCCTCCTCCTCCTCCTCCTCGGGGTAGATCTTCGCGCGGGCTCTCCCGCTGGGGCGGCACCGCGCGCGCCCCGCCGTGATGGCGTCGGACGGCGCGCAGATGGAGGTGGAGCGGCGGCTTCGCGACATCGGCGCCCGCTTCACCTCGCTCCCGGACGCCGACGACGAGCTGCTCAGATTAATCGAGGAGGCAGAAACCTGGTTGGCCAGGGTTGACCAGTCGCCGCCGGAGAGCATGCACAAGGCTCTCCGGCCAACAATGAGTGCTCTGATTAAGAAGGAGTTACTGGATCACAGTGTCCCTGACATAAAGCTTGCTGTTGCCTCCTGTTTAACGGAGGTTACCAGGATCACTGCCCCGGAGGCCCCCTATGACGATGATGTCATGAAGGATGTATTTACCAGAGTTGTTGAGGCCTTTGAGAAGTTGGATGATATGGAAAGCCCCTCCTATGCAAGGAGGGTTGCGATGCTTTGAAACCGTGCGAAGGCCCGGAGCTGGTCTTGATGCTAGATCTGCTGCGAGATCTGATCNGGACATGTTACCACTCTCAGACCATATCATACTATCAGAGATGCATACTCATGGACTGGAGAGTTGTATGTGANACAGATGCACAGATTGCATCTGCTGTAGACACATTACTCGAGACTAAAGGAGAAGACTTCGGTTTTGACTGAAAGGTTATGGTTGAATACCAGTCCTATTGGCACTGCATCGGAAACAATTTTCTTGAATTTGGGGCCCCCTCCGGGGGGGAGGTTATTTAATTGGTGATATAATGGCGCTTAAGAGTATAACAAAGCTTGGGGGAAGCGC] consensusID : consensus_12682#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 153 fasta sequence [TTGCATGTAGGCTGGATCAATATGGCACATCCATATGAAAAGAACCTGCTGGGTGTTTCTATTTTTCCTTCCTTTGTTTGCTCACCCAAGCTAACTCTACCCCTTCTGCCGCGCGGCCTGGTAAAAATGATCAAAGAACTCAAATATATAAAA] [+] EMBL BI803414 [TTGCATGTAGGCTGGATCAATATGGCACATCCATATGAAAAGAACCTGCTGGGTGTTTCTATTTTTCCTTCCTTTGTTTGCTCACCCAAGCTAACTCTACCCCTTCTGCCGCGCGGCCTGGTAAAAATGATCAAAGAACTCAAATATATAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12682#0 TCTCGCCCTCTCCTCCCCCTCCCCCTCCCCCTCCAGTCCCCTCGCGAAACCCTAACTGTC 60 consensus_12682#1 ----------------------------------------------AAACCCTAACTGTC 14 consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 TCCCCCTCCTCCTCCTCCTCCTCCTCGGGGTAGATCTTCGCGCGGGCTCTCCCGCTGGGG 120 consensus_12682#1 TCCCCCTCCTCCTCCTCCTCCTCCTCGGGGTAGATCTTCGCGCGGGCTCTCCCGCTGGGG 74 consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 CGGCACCGCGCGCGCCCCGCCGTGATGGCGTCGGACGGCGCGCAGATGGAGGTGGAGCGG 180 consensus_12682#1 CGGCACCGCGCGCGCCCCGCCGTGATGGCGTCGGACGGCGCGCAGATGGAGGTGGAGCGG 134 consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 CGGCTTCGCGACATCGGCGCCCGCTTCACCTCGCTCCCGGACGCCGACGACGAGCTGCTC 240 consensus_12682#1 CGGCTTCGCGACATCGGCGCCCGCTTCACCTCGCTCCCGGACGCCGACGACGAGCTGCTC 194 consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 AGATTAATCGAGGAGGCAGAAACCTGGTTGGCCAGGGTTGACCAGTCGCCGCCGGAGAGC 300 consensus_12682#1 AGATTAATCGAGGAGGCAGAAACCTGGTTGGCCAGGGTTGACCAGTCGCCGCCGGAGAGC 254 consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 ATGCACA-AGGCTCTCCGGCCAACAATGAGTGCTCTGATTAAGAAGGAGTTACTGGATCA 359 consensus_12682#1 ATGCACA-AGGCTCTCCGGCCAACAATGAGTGCTCTGATTAAGAAGGAGTTACTGGATCA 313 consensus_12682#2 TTGCATGTAGGCTG---GATCAATATGGCACATCCATAT-GAAAAGAACCTGCTGG---- 52 **** ***** * *** * * * ** * *** * * **** consensus_12682#0 CAGTGTCCCTGACATAAAGCTTGCTGTTGCCTCCTGTTTAACGGAGGTTACCAGGATCAC 419 consensus_12682#1 CAGTGTCCCTGACATAAAGCTTGCTGTTGCCTCCTGTTTAACGGAGGTTACCAGGATCAC 373 consensus_12682#2 --GTGTTTCT-------ATTTTTCCTTCCTTTGTTTGCTCACCCAAGCTAACTCTACCCC 103 **** ** * ** * * * * * ** * * ** * * * * consensus_12682#0 TGCCCCGGAGGCCCCCTATGACGATGATGTCATGAAGGATGTATTTACCAGAGTTGTTGA 479 consensus_12682#1 TGCCCCGGAGGCCCCCTATGACGATGATGTCATGAAGGATGTATTTACCAGAGTTGTTGA 433 consensus_12682#2 TTCTGCCGCGCGGCCTGGTAAAAATGAT--CAAAGAACTCAAATATATAAAA-------- 153 * * * * * ** * * ***** ** * ** ** * * consensus_12682#0 GGCCTTTGAGAAGTTGGATGATATGGAAAGCCCCTCCTATGCAAGGAGGGTTGCGATGCT 539 consensus_12682#1 GGCCTTTGAGAAGTTGGATGATATGGAAAGCCCCTCCTATGCAAGGAGGGTTGCGATGCT 493 consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 TGAAACCGTTGCGAAGGTCCGGAGCTGTGTCTTGATGCTAGATCTTGACTGCGACGATCT 599 consensus_12682#1 TTGAAACCGTGCGAAGGCCCGGAGCTG-GTCTTGATGCTAGATCT--GCTGCGA-GATCT 549 consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 GATACGGGACATGTTTCACCACTTCTTCAGAACCATATCCAATACTCATCAAGAGAATGT 659 consensus_12682#1 GAT-CNGGACATGTT--ACCACT--CTCAGA-CCATATC--ATACT-ATCAGAGATGCAT 600 consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 CATCACCTCGATGGAAACTGTGATGAAGTTTGTAATTGATGAGAGCGAAGATGTCCAGCA 719 consensus_12682#1 ACTCAT--------GGACTG----GAGAGTTGTATGTGA------NACAGATGCACAG-- 640 consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 AGATATGCCATCCTGCCTGCTTCAAGATCTAGCATCTTACCTTCTGAAGAACCTTAAAAA 779 consensus_12682#1 ---------ATTGCATCTGCTGTAGA------CACATTAC-------------TCGAGAC 672 consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 GGAAGAAAAAGAAACTCTTCCAGCATCTTTCGAACTTGCAGAGAAGGTAATTAATAAGTG 839 consensus_12682#1 TAAAGGAGAAGA-----CTTCGG----TTTTGACTGAAAGGTTATGGTTGAATACCAGTC 723 consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 TTATGAGAAGTTAAAGCCAGTGTTTACTCCTTTACTTCGGGGCACTCCCTTGGATG-AGT 898 consensus_12682#1 CTATTGGCA-CTGCATCGGAAACAATTTTCTTGAATTTGGGGCCCCCTCCGGGGGGGAGG 782 consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 ACAGCGAAGTTGTTACATCAT--TGTTCGAAGATGCTTTAGATGCTGGAGTAGCCGACAA 956 consensus_12682#1 TTATTTAATTGGTGATATAATGGCGCTTAAGAGTATAACAAAGCTTGGGGGAAGCGC--- 839 consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 TTCTGATGCCCCTGGAAAGGATATGGTGGCTGATGGGAAATTATCTCATAAGATTGTTTC 1016 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 AGATGAGTCAGCTCAGGAATCATCAAAATTAGAGCAAGATGCCAATTGCCCTGGAAAAGA 1076 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 CGGTACTCCTCCAAACAATACTTCCACTTCGGCGGTTAGCAATGGTTGTGCTTTAATAGA 1136 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 CAGGGTCAAGTCTCCAAGTGGACCATCCTCTTCTGATAAGAAGGCTGAACTGCCTTCTGA 1196 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 TGACAATCAGGCAAAAGACACTGATGATTTGATATCCGGTGCTAAAGAAATACCAGAACC 1256 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 AATCACCACAGAGCCTGAAAAGCCATCTGATCACAATTTAAAGAAAAGCCATAAACTTGA 1316 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 TACTTCCACTGATTCTGAAGTGGTTGATCATTCTAAGGCTGTTAACAACAACGAGGATAT 1376 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 TTTAGTCTCTAGGGAGTTATCCCCAGAGACTGATGATGGGGATAATAAGCTGCCACCAGA 1436 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 GACTGGGAATAGAGCTGCTGATGACAAATCGAAACATGTTGATAACACACCTGCTGGCAA 1496 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 GGGAAAGCGGGGCCGGCCTCCTGCATCAAAGTCGCATGAGAAGAAGAATGTTGGAAAAGG 1556 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 CAAAGTATCAGGTTTAGAGTCTAAAAAAGCTGACGCAGTTAGTGATTCTGGTGGAAGGGC 1616 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 TACAAGGCGACTAGCTAAAGATGATGATATCAAGTCTTCATTCAAAAAGACTGGTGAAGG 1676 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 GGAATCTTCGAAGAAGAAGCAGAAGGAAAATTTGAAACAGCAGGAAGATACTCCACCCGA 1736 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 TGAAGACACTGATGAGGATCTCAGTTTAAAGGATATCGTATCTCCCAAGTCTTCGGCCAA 1796 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 AACAGGTAAAAACAAAGGCCAGGCAGGTGACAGTGGGGGCTCAAAAAGGAAACGTGCACA 1856 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 GGAAGCTGAAGAGACTCCCCAGCCCAAGAAGAACAAAATTCTTAAAGGAAATCTTGTTGG 1916 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 CTCAAGAATCAAAGTGTGGTGGCCTGATGACAGAAAGTTCTATAAAGGTGTTGTTGAGTC 1976 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 ATTTGATGTTGCTTCAAAAAAGCACAAGGTTGTTTATGATGATGGAGATGTTGAACGCCT 2036 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 ACACCTTAAGAATGAAAAATGGGAATTCATTGATGAGGGGCGAGACAACAATCCTGACGC 2096 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 ATCGTCTGATATGCCGCACGGCAGAAGGGGTAGAGTTAGCTTGGGTGAGCAAACAAAGGA 2156 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 AGGAAAAATAGAAACACCCAGCAGTGGGAAACATCGTGGCACTGATGTCGCTGATCCTCC 2216 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 CAAGAAAAGAGGACGCCCTAAAGGTGTGCGCTCCAGCAATAGTTCACAAAATGATGACAG 2276 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 TCCTTTGAAGGGGAAAAGTGCAGAAAACGATGATGAAGATATATCCAAGACACCTAAAAG 2336 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 TGGCAGTGCCCTCAAGAATGAAGGTGGAAGATCATCTCGATCCACTGGCAAGACAAAGGA 2396 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 TGGCCTGCTAAAGGGAAGCAACAAGGATGAGACTGGTAACACTAAAAGCGCAAGCAAATC 2456 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 AAAAAATGATGGTGGCAGCAAACACAAGGATTCAAAAGATGAAGCTAAATCCAGCGGATC 2516 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 AAATCCAAAAGGTGCAAGCACTCCCAAAGCTGCTGATGGATCCAAGACAAATGGTCTTTC 2576 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 GACCAAAAGAAAGCAAAAGGAGAAAGAAGGCGAGTCATCTGAAGAGGAAGAGCATGTGTC 2636 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 TGCTAAAATTTCTACTGGAAAGAAGCGCAGAAGGAAGGCTCATAACTAATTTGCTCTGGC 2696 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 CTTGTGCAGTTCTTCCAAGGGGTACTTATGAGGCATGCAGTCTGAAGGTTTTTGGCATGA 2756 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 GCAGCCTAGCAATTTATATGGCTTCCATCCCTTGGCTGGTTGCCTGCCAAGTCTTGCCCT 2816 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 AATCGACCGTCACGAAACAGCTGGTAGTTGTAGCAGTTGCAGTGGTAGTTGTAATGTAGG 2876 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 TGTTACTTTTGTTCCTTGTGGTCAGCTGTGAGCCTCTAGCAAATATGGTTTCTTGCTTGC 2936 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 TGTCGTTCAACCCTTATTAGATTGTATTTTCTGCTGGAGCTATTTGAGACGTCAATTTTG 2996 consensus_12682#1 ------------------------------------------------------------ consensus_12682#2 ------------------------------------------------------------ consensus_12682#0 CAGCAAGCATGAATGGAGAGAAATGTCGTAGTTCAAAAA 3035 consensus_12682#1 --------------------------------------- consensus_12682#2 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||