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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1432 fasta sequence
[ACCGACCCCCCGCCGAGCTTTCTCGCCTCCCGCGAAGTCGCCACCGCGCGCTGCTCGTCCGTCGTCGCCGCTGCATCCGCCTCCTCCTCGTCCTCCCTACGGCCGTAGGGTGCGGCGGCGGAGGGGGCGACGATGCCACGCTGCGGAGCCGGAGGTCCCTGCGTGTGGATCCGGGCCCTATCCCAGCCGCAACGCCACGGGAGGAAGCCATGGCGGGGCGTGAGGGTCGTCGTGCTGCTGCTGCACGCGCTGTTCATCGGCGCCGTCTTCCTGCTCGATCCGACGCTCCAGAGGCAAATCCACGAGGCCAAGTGGTACATAATTCTATATGGGTTGCTGGTTTTACTTACCTTGGTACAATACCTATATACAGCCACTTCTTCTCCAGGATATTTACCTGATATGTTGACAGCTGGCTCAAGGATGCATGCAACCTTTATTAATACAACAACTCTCTCAAAGCAGGCCAATTCCAAAAGTGGAAGCTTAAACTCTGCCATGAGTCGCAGCAAAATAGATCAGCAAAATCCACAATCCACTACAGCTTTGTTACTACAGCAGACGATGGATCTATATCCTCCTGGGACATCCACCAGGGATTTCACATGCTCTTACTGCCGGCTCATCCAGCCTCCACGCACCAAGCACTGTCATGACTGTGATAAATGTGTCCTCCAATTTGATCATCATTGTGTTTGGCTTGGAACATGCATTGCTAAAAGGAACTACTGCAGATTTTGGTGGTACATATTCGAACAAACAGTTTTAACTGTCTGGACTGTTGCTTTCTACATTCAGTTCTTTTATTTGGGCATCGTTGTATCCTGGTGGAAGTTTGCTATTGGTATTGTACTTTTGGTAGCATTGATA-TTAATCCTCGTGGTCCTGCTGCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGCCAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCAGGGTTCATCCATTCAGCAAAGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACA-GAGGGGATTTTTTCTGGAAGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGTAATCTCCTGCCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTTAGTGTAATGCAAATAATATGGTAGCTATAATTTGTGTCTCA-TTTTTCATGTACAGTGTATGCGCA-TTTTTCTCCTAGAAAATCTGGATT-GATCGATATCCATACCTTGATCTGAGTATGCTCAAATCTGGATTTTTTTTTCTTATGCATTTTAGATTCAGAAATGGTGAGAACTCTTATCAGCGTACCGGATGACGGATAGAATCCTGGGAATATATGGCCCTGTTTAGTTCAAAAAAAAAA]
[+] EMBL AK104521 [ACCGACCCCCCGCCGAGCTTTCTCGCCTCCCGCGAAGTCGCCACCGCGCGCTGCTCGTCCGTCGTCGCCGCTGCATCCGCCTCCTCCTCGTCCTCCCTACGGCCGTAGGGTGCGGCGGCGGAGGGGGCGACGATGCCACGCTGCGGAGCCGGAGGTCCCTGCGTGTGGATCCGGGCCCTATCCCAGCCGCAACGCCACGGGAGGAAGCCATGGCGGGGCGTGAGGGTCGTCGTGCTGCTGCTGCACGCGCTGTTCATCGGCGCCGTCTTCCTGCTCGATCCGACGCTCCAGAGGCAAATCCACGAGGCCAAGTGGTACATAATTCTATATGGGTTGCTGGTTTTACTTACCTTGGTACAATACCTATATACAGCCACTTCTTCTCCAGGATATTTACCTGATATGTTGACAGCTGGCTCAAGGATGCATGCAACCTTTATTAATACAACAACTCTCTCAAAGCAGGCCAATTCCAAAAGTGGAAGCTTAAACTCTGCCATGAGTCGCAGCAAAATAGATCAGCAAAATCCACAATCCACTACAGCTTTGTTACTACAGCAGACGATGGATCTATATCCTCCTGGGACATCCACCAGGGATTTCACATGCTCTTACTGCCGGCTCATCCAGCCTCCACGCACCAAGCACTGTCATGACTGTGATAAATGTGTCCTCCAATTTGATCATCATTGTGTTTGGCTTGGAACATGCATTGCTAAAAGGAACTACTGCAGATTTTGGTGGTACATATTCGAACAAACAGTTTTAACTGTCTGGACTGTTGCTTTCTACATTCAGTTCTTTTATTTGGGCATCGTTGTATCCTGGTGGAAGTTTGCTATTGGTATTGTACTTTTGGTAGCATTGATA TTAATCCTCGTGGTCCTGCTGCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGCCAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCAGGGTTCATCCATTCAGCAAAGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACA GAGGGGATTTTTTCTGGAAGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGTAATCTCCTGCCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTTAGTGTAATGCAAATAATATGGTAGCTATAATTTGTGTCTCA TTTTTCATGTACAGTGTATGCGCA TTTTTCTCCTAGAAAATCTGGATT GATCGATATCCATACCTTGATCTGAGTATGCTCAAATCTGGATTTTTTTTTCTTATGCATTT ]
[+] EMBL AK060894 [ACCGACCCCCCGCCGAGCTTTCTCGCCTCCCGCGAAGTCGCCACCGCGCGCTGCTCGTCCGTCGTCGCCGCTGCATCCGCCTCCTCCTCGTCCTCCCTACGGCCGTAGGGTGCGGCGGCGGAGGGGGCGACGATGCCACGCTGCGGAGCCGGAGGTCCCTGCGTGTGGATCCGGGCCCTATCCCAGCCGCAACGCCACGGGAGGAAGCCATGGCGGGGCGTGAGGGTCGTCGTGCTGCTGCTGCACGCGCTGTTCATCGGCGCCGTCTTCCTGCTCGATCCGACGCTCCAGAGGCAAATCCACGAGGCCAAGTGGTACATAATTCTATATGGGTTGCTGGTTTTACTTACCTTGGTACAATACCTATATACAGCCACTTCTTCTCCAGGATATTTACCTGATATGTTGACAGCTGGCTCAAGGATGCATGCAACCTTTATTAATACAACAACTCTCTCAAAGCAGGCCAATTCCAAAAGTGGAAGCTTAAACTCTGCCATGAGTCGCAGCAAAATAGATCAGCAAAATCCACAATCCACTACAGCTTTGTTACTACAGCAGACGATGGATCTATATCCTCCTGGGACATCCACCAGGGATTTCACATGCTCTTACTGCCGGCTCATCCAGCCTCCACGCACCAAGCACTGTCATGACTGTGATAAATGTGTCCTCCAATTTGATCATCATTGTGTTTGGCTTGGAACATGCATTGCTAAAAGGAACTACTGCAGATTTTGGTGGTACATATTCGAACAAACAGTTTTAACTGTCTGGACTGTTGCTTTCTACATTCAGTTCTTTTATTTGGGCATCGTTGTATCCTGGTGGAAGTTTGCTATTGGTATTGTACTTTTGGTAGCATTGATA TTAATCCTCGTGGTCCTGCTGCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGCCAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCAGGGTTCATCCATTCAGCAAAGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACA GAGGGGATTTTTTCTGGAAGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGTAATCTCCTGCCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTTAGTGTAATGCAAATAATATGGTAGCTATAATTTGTGTCTCA TTTTTCATGTACAGTGTATGCGCA TTTTTCTCCTAGAAAATCTGGATT GATCGATATCCATACCTTGATCTGAGTATGCTCAAATCTGGATTTTTTTTTCTTATGCATTT ]
[+] EMBL OSR25061A [ TCGTCCGTCGTCGCCGCTGCATCCGCCTCCTCCTCGTCCTCCCTACGGCCGTAGGGTGCGGCGGCGGAGGGGGCGACGATGCCACGCTGCGGA NCGGAGGTCCCTGCGTGTGGATCCGGGCCCTATCCCAGCCGCAACGCCACGGGAGGAAGCCATGGCGGGGCGTGAGGGTCGTCGTGCTGCTGCTGCACGCGCTGTTCATCGGCGCCGTCTTCCTGCTCGATCCGACGCTCCAGAGGCAAATCCACGAGGCCAAGTGGTACATAATTCTATATGGGTTGCTGGTTTTACTTACCTTGGTACAATACCTATATACAGNCACTTCTTCTCCAGGATATTTACCTGATATGTTGACAGCTGGCTCAAG ]
[+] EMBL BQ908132 [ ccgATTCAGTTCTTTTATTTGGGCATCGTTGTATCCTGGTGGAAGTTTGCTATTGGTATTGTACTTTTGGTAGCATTGATATTTAATCCTCGTGGTCCTGCTGCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACC AACAACATATGAAATTGCCAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCAGGGTTCATCCATTCAGCAAAGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACA GAGGGGATTTTTTCTGGAAGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGTAATCTCCTGCCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTTAGTGTAATGCAAATAATATGGTAGCTATAATTTG GTCTCA TTTTTCATGTACAGTGTATGCGCA TTTTTCTCCTAGAAAATCTGGATTGGATCGATATCCATACCTGGATCTGAGTATGCTCAAAaa ]
[+] EMBL BM418635 [ GGTTCCTANCAGGGTTCATCCATTCACCAAAGGCATTTCCAGAAATCTGTATGATCTTTGCATCTCTAAACACGAGGGGATTTTTTCTGGAA CNGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGTAATCTCCTGCCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTTAGTGTAATGCNAATAATATGGTAGCTATAATTTGTGTCTCACTTTTTCATGTACCGTGTATGCGCACTTTTTCTCCTAGAAAATCTGGATT GATCGATATCCATACCTTGATCTGAGTATGCTCNAATCTGGATTTTTTTTTCTTATCCTTTGTAGATTCAGAAATGGTGAGAACTCTTATCAGCGTACCGGATGACGGATAGAATCCTGGGAATATATGGCCCTGTTTAGTTCAAAAAAAAAA]
consensusID : consensus_12700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1412 fasta sequence
[CAGGTCGTCCCCACACGACAGCGCTCCGCCTCTCCTTCCCGACTCCACCGACCCCCCGCCGAGCTTTCTCGCCTCCCGCGAAGTCGCCACCGCGCGCTGCTCGTCCGTCGTCGCCGCTGCATCCGCCTCCTCCTCGTCCTCCCTACGGCCGTAGGGTGCGGCGGCGGAGGGGGCGACGATGCCACGCTGCGGAGCCGGAGGTCCCTGCGTGTGGATCCGGGCCCTATCCCAGCCGCAACGCCACGGGAGGAAGCCATGGCGGGGCGTGAGGGTCGTCGTGCTGCTGCTGCACGCGCTGTTCATCGGCGCCGTCTTCCTGCTCGATCCGACGCTCCAGAGGCAAATCCACGAGGCCAAGTGGTACATAATTCTATATGGGTTGCTGGTTTTACTTACCTTGGTACAATACCTATATACAGCCACTTCTTCTCCAGGATATTTACCTGATATGTTGACAGCTGGCTCAAGGATGCATGCAACCTTTATTAATACAACAACTCTCTCAAAGCAGGCCAATTCCAAAAGTGGAAGCTTAAACTCTGCCATGAGTCGCAGCAAAATAGATCAGCAAAATCCACAATCCACTACAGCTTTGTTACTACAGCAGACGATGGATCTATATCCTCCTGGGACATCCACCAGTTGTATGCCTCCATTTTATTTTAGGGATTTCACATGCTCTTACTGCCGGCTCATCCAGCCTCCACGCACCAAGCACTGTCATGACTGTGATAAATGTGTCCTCCAATTTGATCATCATTGTGTTTGGCTTGGAACATGCATTGCTAAAAGGAACTACTGCAGATTTTGGTGGTACATATTC-GAACA-AACAGTTTTAA-CTG-TCTGGACTGTTGCTTTCTACATTCAGTTCTTTTATTTGGGCATCGTTGTATCCTGGTGGAAGTTTGCTATTGGTATTGTACTTTTGGTAGCATTGATATTAATCCTCGTGGTCCTGCTGCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGCCAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCA-GGGTTCATCCATTCAGCA-AAGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACAGAGGGGATTTTTTCTGGAAGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGTAATCTCCTGCCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTTAGTGTAATGCAAATAATATGGTAGCTATAATTTGTGTCTCATTTTTCATGTACAGTGTATGCGCATTTTTCTCCTAGAAAATCTGGATTGATCGATATCCATA-CCTTGATCTGAGTATGCTCAAATCTGGATTTTTTTTTCTAAAAAAAAAA]
[+] EMBL AK072630 [CAGGTCGTCCCCACACGACAGCGCTCCGCCTCTCCTTCCCGACTCCACCGACCCCCCGCCGAGCTTTCTCGCCTCCCGCGAAGTCGCCACCGCGCGCTGCTCGTCCGTCGTCGCCGCTGCATCCGCCTCCTCCTCGTCCTCCCTACGGCCGTAGGGTGCGGCGGCGGAGGGGGCGACGATGCCACGCTGCGGAGCCGGAGGTCCCTGCGTGTGGATCCGGGCCCTATCCCAGCCGCAACGCCACGGGAGGAAGCCATGGCGGGGCGTGAGGGTCGTCGTGCTGCTGCTGCACGCGCTGTTCATCGGCGCCGTCTTCCTGCTCGATCCGACGCTCCAGAGGCAAATCCACGAGGCCAAGTGGTACATAATTCTATATGGGTTGCTGGTTTTACTTACCTTGGTACAATACCTATATACAGCCACTTCTTCTCCAGGATATTTACCTGATATGTTGACAGCTGGCTCAAGGATGCATGCAACCTTTATTAATACAACAACTCTCTCAAAGCAGGCCAATTCCAAAAGTGGAAGCTTAAACTCTGCCATGAGTCGCAGCAAAATAGATCAGCAAAATCCACAATCCACTACAGCTTTGTTACTACAGCAGACGATGGATCTATATCCTCCTGGGACATCCACCAGTTGTATGCCTCCATTTTATTTTAGGGATTTCACATGCTCTTACTGCCGGCTCATCCAGCCTCCACGCACCAAGCACTGTCATGACTGTGATAAATGTGTCCTCCAATTTGATCATCATTGTGTTTGGCTTGGAACATGCATTGCTAAAAGGAACTACTGCAGATTTTGGTGGTACATATTC GAACA AACAGTTTTAA CTG TCTGGACTGTTGCTTTCTACATTCAGTTCTTTTATTTGGGCATCGTTGTATCCTGGTGGAAGTTTGCTATTGGTATTGTACTTTTGGTAGCATTGATATTAATCCTCGTGGTCCTGCTGCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGCCAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCA GGGTTCATCCATTCAGCA AAGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACAGAGGGGATTTTTTCTGGAAGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGTAATCTCCTGCCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTTAGTGTAATGCAAATAATATGGTAGCTATAATTTGTGTCTCATTTTTCATGTACAGTGTATGCGCATTTTTCTCCTAGAAAATCTGGATTGATCGATATCCATA CCTTGATCTGAGTATGCTCAAATCTGGAT ]
[+] EMBL BI813109 [ tGTGTGACATATTCGGACCACACCAGTTTTAACCTGTTCTGGACTG TGC TTCTACATTCAGTTCTTTTATTTGGGCATCGTTGTATCCTGGTGGAAG TTGCTATTGGTATTGTACTTTTGGTA CATTGATATTAATCCTCGTGGTCCTGCTGCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCCAAC ACATATGAAATTGCCAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCACGGGTTCATCCATTCAGCACAAGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACAGAGGGGATTTTTTCTGGAAGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGTAATCTCCTGCCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTTAGTGTAATGCAAATAATATGGTAGCTATAATTTGTGTCTCATTTTTCATGTACAGTGTATGCGCATTTTTCTCCTAGAAAATCTGGATTGATCGATATCCATACCCTTGATCTGAGTATGCTC AATCTGGATTTTTTTTTCTAAAAAAAAAA]
consensusID : consensus_12700#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1225 fasta sequence
[AGTCGCCTCTGCGCGCTGCTCGTCCGTCGTCGCCGCTGCATCCGCCTCCTCCTCGTCCTCCCTACGGCCGTAGGGTGCGGCGGCGGAGGGGGCGACGATGCCACGCTGCGGAGCCGGAGGTCCCTGCGTGTGGATCCGGGCCCTATCCCAGCCGCAACGCCACGGGAGGAAGCCATGGCGGGGCGTGAGGGTCGTCGTGCTGCTGCTGCACGCGCTGTTCATCGGCGCCGTCTTCCTGCTCGATCCGACGCTCCAGAGGCAAATCCACGAGGCCAAGTGGTACATAATTCTATATGGGTTGCTGGTTTTACTTACCTTGGTACAATACCTATATACAGCCACTTCTTCTCCAGGATATTTACCTGATATGTTGACAGCTGGCTCAAGGATGCATGCAACCTTTATTAATACAACAACTCTCTCAAAGCAGGCCAATTCCAAAAGTGGAAGCTTAAACTCTGCCATGAGTCGCAGCAAAATAGATCAGCAAAATCCACAATCCACTACAGCTTTGTTACTACAGCAGACGATGGATCTATATCCTCCTGGGACATCCACCAGGGATTTCACATGCTCTTACTGCCGGCTCATCCAGCCTCCACGCACCAAGCACTGTCATGACTGTGATAAATGTGTCCTCCAATTTGATCATCATTGTGTTTGGCTTGGAACATGCATTGCTAAAAGGAACTACTGCAGATTTTGGTGGTACATATTCGAACAAACAGTTTTAACTGTCTGGACTGTTGCTTTCTACATTCAGTTCTTTTATTTGGGCATCGTTGTATCCTGGTGGAAGTTTGCTATTGGTATTGTACTTTTGGTAGCATTGATATTAATCCTCGTGGTCCTGCTGCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGCCAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCAGGGTTCATCCATTCAGCAAAGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACAGAGGGGATTTTTTCTGGAAGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGTAATCTCCTGCCGGTGCTGTTAGGAGCTTGTGTATGCGCATTTTTCTCCTAGAAAATCTGGATTGATCGATATCCATACCTTGATCAGGGTATGCTCAAATCTGGATTTTTTTTTCTAAAAAACAAAAAAG]
[+] EMBL CB655352 [AGTCGCCTCTGCGCGCTGCTCGTCCGTCGTCGCCGCTGCATCCGCCTCCTCCTCGTCCTCCCTACGGCCGTAGGGTGCGGCGGCGGAGGGGGCGACGATGCCACGCTGCGGAGCCGGAGGTCCCTGCGTGTGGATCCGGGCCCTATCCCAGCCGCAACGCCACGGGAGGAAGCCATGGCGGGGCGTGAGGGTCGTCGTGCTGCTGCTGCACGCGCTGTTCATCGGCGCCGTCTTCCTGCTCGATCCGACGCTCCAGAGGCAAATCCACGAGGCCAAGTGGTACATAATTCTATATGGGTTGCTGGTTTTACTTACCTTGGTACAATACCTATATACAGCCACTTCTTCTCCAGGATATTTACCTGATATGTTGACAGCTGGCTCAAGGATGCATGCAACCTTTATTAATACAACAACTCTCTCAAAGCAGGCCAATTCCAAAAGTGGAAGCTTAAACTCTGCCATGAGTCGCAGCAAAATAGATCAGCAAAATCCACAATCCACTACAGCTTTGTTACTACAGCAGACGATGGATCTATATCCTCCTGGGACATCCACCAGGGATTTCACATGCTCTTACTGCCGGCTCATCCAGCCTCCACGCACCAAGCACTGTCATGACTGTGATAAATGTGTCCTCCAATTTGATCATCATTGTGTTTGGCTTGGAACATGCATTGCTAAAAGGAACTACTGCAGATTTTGGT ]
[-] EMBL CB655353 [ TCAGCAAAATCCACAATCCACTACAGCTTTGTTACTACAGCAGACGATGGATCTATATCCTCCTGGGACATCCACCAGGGATTTCACATGCTCTTACTGCCGGCTCATCCAGCCTCCACGCACCAAGCACTGTCATGACTGTGATAAATGTGTCCTCCAATTTGATCATCATTGTGTTTGGCTTGGAACATGCATTGCTAAAAGGAACTACTGCAGATTTTGGTGGTACATATTCGAACAAACAGTTTTAACTGTCTGGACTGTTGCTTTCTACATTCAGTTCTTTTATTTGGGCATCGTTGTATCCTGGTGGAAGTTTGCTATTGGTATTGTACTTTTGGTAGCATTGATATTAATCCTCGTGGTCCTGCTGCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGCCAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCAGGGTTCATCCATTCAGCAAAGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACAGAGGGGATTTTTTCTGGAAGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGTAATCTCCTGCCGGTGCTGTTAGGAGCTTGTGTATGCGCATTTTTCTCCTAGAAAATCTGGATTGATCGATATCCATACCTTGATCAGGGTATGCTCAAATCTGGATTTTTTTTTCTAAAAAACAAAAAAG]
consensusID : consensus_12700#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 475 fasta sequence
[GTATCCTGGTGGAGTTGGCTATTGGTATTGTACTTTGGGTAGCATTGATATTATCTCGTGGTCCTGCTGCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGCCAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCA-GGGTTCATCCA-TTCAGCAAAGGCA-TTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACA-GAGGGGATTTTTTCTGGAAGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGTAATCTCCTG-CCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTTAGTGTAATGCAAATAATATGGTAGCTATAATTTGTGTCTCATTTTTCATGTACAGTGTATGCGCATTTTTCTCCTAGAAAATCTGGATTGATCGAAAAAAAAGCGGC]
[-] EMBL AU225615 [GTATCCTGGTGGAGTTGGCTATTGGTATTGTACTTTGGGTAGCATTGATATTATCTCGTGGTCCTGCTGCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGCCAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCA GGGTTCATCCA TTCAGCAAAGGCA TTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACA GAGGGGATTTTTTCTGGAAGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGTAATCTCCTG CCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTTAGTGTAATGCAAATAATATGGTAGCTATAATTTGTGTCTCATTTTTCATGTACAGTGTATGCGCATTTTTCTCCTAGAAAATCTGGATTGATCGAAAAAAAAGCGGC]
[+] EMBL BI809832 [ cGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTA CACGGGTTCATCCACTTCAGCAAAGGCACTTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACACGAGGGGATTTTTTCTGGAAGCCGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACAT CCGAGATGTAATCTCCTGCCCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTTAGTGTAATGCCAATAATATGGTAGCTATAATTTGTGTCTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12700#0 ------------------------------------------------------------
consensus_12700#3 ------------------------------------------------------------
consensus_12700#1 CAGGTCGTCCCCACACGACAGCGCTCCGCCTCTCCTTCCCGACTCCACCGACCCCCCGCC 60
consensus_12700#2 ------------------------------------------------------------
consensus_12700#0 ----------ACCGACCCCCCGCCGAGCTTTCTCGCCTCCCGCGAAGTCGCCACCGCGCG 50
consensus_12700#3 ------------------------------------------------------------
consensus_12700#1 GAGCTTTCTCGCCTCCCGCGAAGTCGCCACCGCGCGCTGCTCGTCCGTCGTCGCCGCTGC 120
consensus_12700#2 ---------------------AGTCGCCTCTGCGCGCTGCTCGTCCGTCGTCGCCGCTGC 39
consensus_12700#0 CTGCTCGTCCGTCGTCGCCGCTGCATCCGCCTCCTCCTCGTCCTCCCTACGGCCGTAGGG 110
consensus_12700#3 ------------------------------------------------------------
consensus_12700#1 ATCCGCCTCCTCCTCGTCCTCCCTACGGCCGTAGGGTGCGGCGGCGGAGGGGGCGACGAT 180
consensus_12700#2 ATCCGCCTCCTCCTCGTCCTCCCTACGGCCGTAGGGTGCGGCGGCGGAGGGGGCGACGAT 99
consensus_12700#0 TGCGGCGGCGGAGGGGGCGACGATGCCACGCTGCGGAGCCGGAGGTCCCTGCGTGTGGAT 170
consensus_12700#3 ------------------------------------------------------------
consensus_12700#1 GCCACGCTGCGGAGCCGGAGGTCCCTGCGTGTGGATCCGGGCCCTATCCCAGCCGCAACG 240
consensus_12700#2 GCCACGCTGCGGAGCCGGAGGTCCCTGCGTGTGGATCCGGGCCCTATCCCAGCCGCAACG 159
consensus_12700#0 CCGGGCCCTATCCCAGCCGCAACGCCACGGGAGGAAGCCATGGCGGGGCGTGAGGGTCGT 230
consensus_12700#3 ------------------------------------------------------------
consensus_12700#1 CCACGGGAGGAAGCCATGGCGGGGCGTGAGGGTCGTCGTGCTGCTGCTGCACGCGCTGTT 300
consensus_12700#2 CCACGGGAGGAAGCCATGGCGGGGCGTGAGGGTCGTCGTGCTGCTGCTGCACGCGCTGTT 219
consensus_12700#0 CGTGCTGCTGCTGCACGCGCTGTTCATCGGCGCCGTCTTCCTGCTCGATCCGACGCTCCA 290
consensus_12700#3 ------------------------------------------------------------
consensus_12700#1 CATCGGCGCCGTCTTCCTGCTCGATCCGACGCTCCAGAGGCAAATCCACGAGGCCAAGTG 360
consensus_12700#2 CATCGGCGCCGTCTTCCTGCTCGATCCGACGCTCCAGAGGCAAATCCACGAGGCCAAGTG 279
consensus_12700#0 GAGGCAAATCCACGAGGCCAAGTGGTACATAATTCTATATGGGTTGCTGGTTTTACTTAC 350
consensus_12700#3 ------------------------------------------------------------
consensus_12700#1 GTACATAATTCTATATGGGTTGCTGGTTTTACTTACCTTGGTACAATACCTATATACAGC 420
consensus_12700#2 GTACATAATTCTATATGGGTTGCTGGTTTTACTTACCTTGGTACAATACCTATATACAGC 339
consensus_12700#0 CTTGGTACAATACCTATATACAGCCACTTCTTCTCCAGGATATTTACCTGATATGTTGAC 410
consensus_12700#3 ------------------------------------------------------------
consensus_12700#1 CACTTCTTCTCCAGGATATTTACCTGATATGTTGACAGCTGGCTCAAGGATGCATGCAAC 480
consensus_12700#2 CACTTCTTCTCCAGGATATTTACCTGATATGTTGACAGCTGGCTCAAGGATGCATGCAAC 399
consensus_12700#0 AGCTGGCTCAAGGATGCATGCAACCTTTATTAATACAACAACTCTCTCAAAGCAGGCCAA 470
consensus_12700#3 ------------------------------------------------------------
consensus_12700#1 CTTTATTAATACAACAACTCTCTCAAAGCAGGCCAATTCCAAAAGTGGAAGCTTAAACTC 540
consensus_12700#2 CTTTATTAATACAACAACTCTCTCAAAGCAGGCCAATTCCAAAAGTGGAAGCTTAAACTC 459
consensus_12700#0 TTCCAAAAGTGGAAGCTTAAACTCTGCCATGAGTCGCAGCAAAATAGATCAGCAAAATCC 530
consensus_12700#3 ------------------------------------------------------------
consensus_12700#1 TGCCATGAGTCGCAGCAAAATAGATCAGCAAAATCCACAATCCACTACAGCTTTGTTACT 600
consensus_12700#2 TGCCATGAGTCGCAGCAAAATAGATCAGCAAAATCCACAATCCACTACAGCTTTGTTACT 519
consensus_12700#0 ACAATCCACTACAGCTTTGTTACTACAGCAGACGATGGATCTATATCCTCCTGGGACATC 590
consensus_12700#3 ------------------------------------------------------------
consensus_12700#1 ACAGCAGACGATGGATCTATATCCTCCTGGGACATCCACCAGTTGTATGCCTCCATTTTA 660
consensus_12700#2 ACAGCAGACGATGGATCTATATCCTCCTGGGACATCCACCAG------------------ 561
consensus_12700#0 CACCAGGGATTTCACATGCTCTTACTGCCGGCTCATCCAGCCTCCACGCACCAAGCACTG 650
consensus_12700#3 ------------------------------------------------------------
consensus_12700#1 TTTTAGGGATTTCACATGCTCTTACTGCCGGCTCATCCAGCCTCCACGCACCAAGCACTG 720
consensus_12700#2 ------GGATTTCACATGCTCTTACTGCCGGCTCATCCAGCCTCCACGCACCAAGCACTG 615
consensus_12700#0 TCATGACTGTGATAAATGTGTCCTCCAATTTGATCATCATTGTGTTTGGCTTGGAACATG 710
consensus_12700#3 ------------------------------------------------------------
consensus_12700#1 TCATGACTGTGATAAATGTGTCCTCCAATTTGATCATCATTGTGTTTGGCTTGGAACATG 780
consensus_12700#2 TCATGACTGTGATAAATGTGTCCTCCAATTTGATCATCATTGTGTTTGGCTTGGAACATG 675
consensus_12700#0 CATTGCTAAAAGGAACTACTGCAGATTTTGGTGGTACATATTCGAACAAACAGTTTTAAC 770
consensus_12700#3 ------------------------------------------------------------
consensus_12700#1 CATTGCTAAAAGGAACTACTGCAGATTTTGGTGGTACATATTCGAACAAACAGTTTTAAC 840
consensus_12700#2 CATTGCTAAAAGGAACTACTGCAGATTTTGGTGGTACATATTCGAACAAACAGTTTTAAC 735
consensus_12700#0 TGTCTGGACTGTTGCTTTCTACATTCAGTTCTTTTATTTGGGCATCGTTGTATCCTGGTG 830
consensus_12700#3 -------------------------------------------------GTATCCTGGTG 11
consensus_12700#1 TGTCTGGACTGTTGCTTTCTACATTCAGTTCTTTTATTTGGGCATCGTTGTATCCTGGTG 900
consensus_12700#2 TGTCTGGACTGTTGCTTTCTACATTCAGTTCTTTTATTTGGGCATCGTTGTATCCTGGTG 795
***********
consensus_12700#0 GAAGTTTGCTATTGGTATTGTACTTTTGGTAGCATTGATATTAATCCTCGTGGTCCTGCT 890
consensus_12700#3 GA-GTTGGCTATTGGTATTGTACTTTGGGTAGCATTGATATTA--TCTCGTGGTCCTGCT 68
consensus_12700#1 GAAGTTTGCTATTGGTATTGTACTTTTGGTAGCATTGATATTAATCCTCGTGGTCCTGCT 960
consensus_12700#2 GAAGTTTGCTATTGGTATTGTACTTTTGGTAGCATTGATATTAATCCTCGTGGTCCTGCT 855
** *** ******************* **************** **************
consensus_12700#0 GCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGC 950
consensus_12700#3 GCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGC 128
consensus_12700#1 GCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGC 1020
consensus_12700#2 GCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGC 915
************************************************************
consensus_12700#0 CAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCAGGGTTCATCCATTCAGCAA 1010
consensus_12700#3 CAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCAGGGTTCATCCATTCAGCAA 188
consensus_12700#1 CAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCAGGGTTCATCCATTCAGCAA 1080
consensus_12700#2 CAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCAGGGTTCATCCATTCAGCAA 975
************************************************************
consensus_12700#0 AGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACAGAGGGGATTTTTTCTGGA 1070
consensus_12700#3 AGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACAGAGGGGATTTTTTCTGGA 248
consensus_12700#1 AGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACAGAGGGGATTTTTTCTGGA 1140
consensus_12700#2 AGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACAGAGGGGATTTTTTCTGGA 1035
************************************************************
consensus_12700#0 AGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGT 1130
consensus_12700#3 AGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGT 308
consensus_12700#1 AGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGT 1200
consensus_12700#2 AGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGT 1095
************************************************************
consensus_12700#0 AATCTCCTGCCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTT 1190
consensus_12700#3 AATCTCCTGCCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTT 368
consensus_12700#1 AATCTCCTGCCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTT 1260
consensus_12700#2 AATCTCCTGCCGGTGCTGTTAGGAGCTTG------------------------------- 1124
*****************************
consensus_12700#0 AGTGTAATGCAAATAATATGGTAGCTATAATTTGTGTCTCATTTTTCATGTACAGTGTAT 1250
consensus_12700#3 AGTGTAATGCAAATAATATGGTAGCTATAATTTGTGTCTCATTTTTCATGTACAGTGTAT 428
consensus_12700#1 AGTGTAATGCAAATAATATGGTAGCTATAATTTGTGTCTCATTTTTCATGTACAGTGTAT 1320
consensus_12700#2 -------------------------------------------------------TGTAT 1129
*****
consensus_12700#0 GCGCATTTTTCTCCTAGAAAATCTGGATTGATCGATATCCATACCTTGATCTGAGTATGC 1310
consensus_12700#3 GCGCATTTTTCTCCTAGAAAATCTGGATTGATCGAAAAAAAAGCGGC------------- 475
consensus_12700#1 GCGCATTTTTCTCCTAGAAAATCTGGATTGATCGATATCCATACCTTGATCTGAGTATGC 1380
consensus_12700#2 GCGCATTTTTCTCCTAGAAAATCTGGATTGATCGATATCCATACCTTGATCAGGGTATGC 1189
*********************************** * * *
consensus_12700#0 TCAAATCTGGATTTTTTTTTCTTATGCATTTTAGATTCAGAAATGGTGAGAACTCTTATC 1370
consensus_12700#3 ------------------------------------------------------------
consensus_12700#1 TCAAATCTGGATTTTTTTTTCTAAAAAAAAAA---------------------------- 1412
consensus_12700#2 TCAAATCTGGATTTTTTTTTCTAAAAAACAAAAAAG------------------------ 1225
consensus_12700#0 AGCGTACCGGATGACGGATAGAATCCTGGGAATATATGGCCCTGTTTAGTTCAAAAAAAA 1430
consensus_12700#3 ------------------------------------------------------------
consensus_12700#1 ------------------------------------------------------------
consensus_12700#2 ------------------------------------------------------------
consensus_12700#0 AA 1432
consensus_12700#3 --
consensus_12700#1 --
consensus_12700#2 --
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||