These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1432 fasta sequence [ACCGACCCCCCGCCGAGCTTTCTCGCCTCCCGCGAAGTCGCCACCGCGCGCTGCTCGTCCGTCGTCGCCGCTGCATCCGCCTCCTCCTCGTCCTCCCTACGGCCGTAGGGTGCGGCGGCGGAGGGGGCGACGATGCCACGCTGCGGAGCCGGAGGTCCCTGCGTGTGGATCCGGGCCCTATCCCAGCCGCAACGCCACGGGAGGAAGCCATGGCGGGGCGTGAGGGTCGTCGTGCTGCTGCTGCACGCGCTGTTCATCGGCGCCGTCTTCCTGCTCGATCCGACGCTCCAGAGGCAAATCCACGAGGCCAAGTGGTACATAATTCTATATGGGTTGCTGGTTTTACTTACCTTGGTACAATACCTATATACAGCCACTTCTTCTCCAGGATATTTACCTGATATGTTGACAGCTGGCTCAAGGATGCATGCAACCTTTATTAATACAACAACTCTCTCAAAGCAGGCCAATTCCAAAAGTGGAAGCTTAAACTCTGCCATGAGTCGCAGCAAAATAGATCAGCAAAATCCACAATCCACTACAGCTTTGTTACTACAGCAGACGATGGATCTATATCCTCCTGGGACATCCACCAGGGATTTCACATGCTCTTACTGCCGGCTCATCCAGCCTCCACGCACCAAGCACTGTCATGACTGTGATAAATGTGTCCTCCAATTTGATCATCATTGTGTTTGGCTTGGAACATGCATTGCTAAAAGGAACTACTGCAGATTTTGGTGGTACATATTCGAACAAACAGTTTTAACTGTCTGGACTGTTGCTTTCTACATTCAGTTCTTTTATTTGGGCATCGTTGTATCCTGGTGGAAGTTTGCTATTGGTATTGTACTTTTGGTAGCATTGATA-TTAATCCTCGTGGTCCTGCTGCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGCCAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCAGGGTTCATCCATTCAGCAAAGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACA-GAGGGGATTTTTTCTGGAAGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGTAATCTCCTGCCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTTAGTGTAATGCAAATAATATGGTAGCTATAATTTGTGTCTCA-TTTTTCATGTACAGTGTATGCGCA-TTTTTCTCCTAGAAAATCTGGATT-GATCGATATCCATACCTTGATCTGAGTATGCTCAAATCTGGATTTTTTTTTCTTATGCATTTTAGATTCAGAAATGGTGAGAACTCTTATCAGCGTACCGGATGACGGATAGAATCCTGGGAATATATGGCCCTGTTTAGTTCAAAAAAAAAA] [+] EMBL AK104521 [ACCGACCCCCCGCCGAGCTTTCTCGCCTCCCGCGAAGTCGCCACCGCGCGCTGCTCGTCCGTCGTCGCCGCTGCATCCGCCTCCTCCTCGTCCTCCCTACGGCCGTAGGGTGCGGCGGCGGAGGGGGCGACGATGCCACGCTGCGGAGCCGGAGGTCCCTGCGTGTGGATCCGGGCCCTATCCCAGCCGCAACGCCACGGGAGGAAGCCATGGCGGGGCGTGAGGGTCGTCGTGCTGCTGCTGCACGCGCTGTTCATCGGCGCCGTCTTCCTGCTCGATCCGACGCTCCAGAGGCAAATCCACGAGGCCAAGTGGTACATAATTCTATATGGGTTGCTGGTTTTACTTACCTTGGTACAATACCTATATACAGCCACTTCTTCTCCAGGATATTTACCTGATATGTTGACAGCTGGCTCAAGGATGCATGCAACCTTTATTAATACAACAACTCTCTCAAAGCAGGCCAATTCCAAAAGTGGAAGCTTAAACTCTGCCATGAGTCGCAGCAAAATAGATCAGCAAAATCCACAATCCACTACAGCTTTGTTACTACAGCAGACGATGGATCTATATCCTCCTGGGACATCCACCAGGGATTTCACATGCTCTTACTGCCGGCTCATCCAGCCTCCACGCACCAAGCACTGTCATGACTGTGATAAATGTGTCCTCCAATTTGATCATCATTGTGTTTGGCTTGGAACATGCATTGCTAAAAGGAACTACTGCAGATTTTGGTGGTACATATTCGAACAAACAGTTTTAACTGTCTGGACTGTTGCTTTCTACATTCAGTTCTTTTATTTGGGCATCGTTGTATCCTGGTGGAAGTTTGCTATTGGTATTGTACTTTTGGTAGCATTGATA TTAATCCTCGTGGTCCTGCTGCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGCCAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCAGGGTTCATCCATTCAGCAAAGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACA GAGGGGATTTTTTCTGGAAGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGTAATCTCCTGCCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTTAGTGTAATGCAAATAATATGGTAGCTATAATTTGTGTCTCA TTTTTCATGTACAGTGTATGCGCA TTTTTCTCCTAGAAAATCTGGATT GATCGATATCCATACCTTGATCTGAGTATGCTCAAATCTGGATTTTTTTTTCTTATGCATTT ] [+] EMBL AK060894 [ACCGACCCCCCGCCGAGCTTTCTCGCCTCCCGCGAAGTCGCCACCGCGCGCTGCTCGTCCGTCGTCGCCGCTGCATCCGCCTCCTCCTCGTCCTCCCTACGGCCGTAGGGTGCGGCGGCGGAGGGGGCGACGATGCCACGCTGCGGAGCCGGAGGTCCCTGCGTGTGGATCCGGGCCCTATCCCAGCCGCAACGCCACGGGAGGAAGCCATGGCGGGGCGTGAGGGTCGTCGTGCTGCTGCTGCACGCGCTGTTCATCGGCGCCGTCTTCCTGCTCGATCCGACGCTCCAGAGGCAAATCCACGAGGCCAAGTGGTACATAATTCTATATGGGTTGCTGGTTTTACTTACCTTGGTACAATACCTATATACAGCCACTTCTTCTCCAGGATATTTACCTGATATGTTGACAGCTGGCTCAAGGATGCATGCAACCTTTATTAATACAACAACTCTCTCAAAGCAGGCCAATTCCAAAAGTGGAAGCTTAAACTCTGCCATGAGTCGCAGCAAAATAGATCAGCAAAATCCACAATCCACTACAGCTTTGTTACTACAGCAGACGATGGATCTATATCCTCCTGGGACATCCACCAGGGATTTCACATGCTCTTACTGCCGGCTCATCCAGCCTCCACGCACCAAGCACTGTCATGACTGTGATAAATGTGTCCTCCAATTTGATCATCATTGTGTTTGGCTTGGAACATGCATTGCTAAAAGGAACTACTGCAGATTTTGGTGGTACATATTCGAACAAACAGTTTTAACTGTCTGGACTGTTGCTTTCTACATTCAGTTCTTTTATTTGGGCATCGTTGTATCCTGGTGGAAGTTTGCTATTGGTATTGTACTTTTGGTAGCATTGATA TTAATCCTCGTGGTCCTGCTGCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGCCAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCAGGGTTCATCCATTCAGCAAAGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACA GAGGGGATTTTTTCTGGAAGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGTAATCTCCTGCCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTTAGTGTAATGCAAATAATATGGTAGCTATAATTTGTGTCTCA TTTTTCATGTACAGTGTATGCGCA TTTTTCTCCTAGAAAATCTGGATT GATCGATATCCATACCTTGATCTGAGTATGCTCAAATCTGGATTTTTTTTTCTTATGCATTT ] [+] EMBL OSR25061A [ TCGTCCGTCGTCGCCGCTGCATCCGCCTCCTCCTCGTCCTCCCTACGGCCGTAGGGTGCGGCGGCGGAGGGGGCGACGATGCCACGCTGCGGA NCGGAGGTCCCTGCGTGTGGATCCGGGCCCTATCCCAGCCGCAACGCCACGGGAGGAAGCCATGGCGGGGCGTGAGGGTCGTCGTGCTGCTGCTGCACGCGCTGTTCATCGGCGCCGTCTTCCTGCTCGATCCGACGCTCCAGAGGCAAATCCACGAGGCCAAGTGGTACATAATTCTATATGGGTTGCTGGTTTTACTTACCTTGGTACAATACCTATATACAGNCACTTCTTCTCCAGGATATTTACCTGATATGTTGACAGCTGGCTCAAG ] [+] EMBL BQ908132 [ ccgATTCAGTTCTTTTATTTGGGCATCGTTGTATCCTGGTGGAAGTTTGCTATTGGTATTGTACTTTTGGTAGCATTGATATTTAATCCTCGTGGTCCTGCTGCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACC AACAACATATGAAATTGCCAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCAGGGTTCATCCATTCAGCAAAGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACA GAGGGGATTTTTTCTGGAAGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGTAATCTCCTGCCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTTAGTGTAATGCAAATAATATGGTAGCTATAATTTG GTCTCA TTTTTCATGTACAGTGTATGCGCA TTTTTCTCCTAGAAAATCTGGATTGGATCGATATCCATACCTGGATCTGAGTATGCTCAAAaa ] [+] EMBL BM418635 [ GGTTCCTANCAGGGTTCATCCATTCACCAAAGGCATTTCCAGAAATCTGTATGATCTTTGCATCTCTAAACACGAGGGGATTTTTTCTGGAA CNGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGTAATCTCCTGCCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTTAGTGTAATGCNAATAATATGGTAGCTATAATTTGTGTCTCACTTTTTCATGTACCGTGTATGCGCACTTTTTCTCCTAGAAAATCTGGATT GATCGATATCCATACCTTGATCTGAGTATGCTCNAATCTGGATTTTTTTTTCTTATCCTTTGTAGATTCAGAAATGGTGAGAACTCTTATCAGCGTACCGGATGACGGATAGAATCCTGGGAATATATGGCCCTGTTTAGTTCAAAAAAAAAA] consensusID : consensus_12700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1412 fasta sequence [CAGGTCGTCCCCACACGACAGCGCTCCGCCTCTCCTTCCCGACTCCACCGACCCCCCGCCGAGCTTTCTCGCCTCCCGCGAAGTCGCCACCGCGCGCTGCTCGTCCGTCGTCGCCGCTGCATCCGCCTCCTCCTCGTCCTCCCTACGGCCGTAGGGTGCGGCGGCGGAGGGGGCGACGATGCCACGCTGCGGAGCCGGAGGTCCCTGCGTGTGGATCCGGGCCCTATCCCAGCCGCAACGCCACGGGAGGAAGCCATGGCGGGGCGTGAGGGTCGTCGTGCTGCTGCTGCACGCGCTGTTCATCGGCGCCGTCTTCCTGCTCGATCCGACGCTCCAGAGGCAAATCCACGAGGCCAAGTGGTACATAATTCTATATGGGTTGCTGGTTTTACTTACCTTGGTACAATACCTATATACAGCCACTTCTTCTCCAGGATATTTACCTGATATGTTGACAGCTGGCTCAAGGATGCATGCAACCTTTATTAATACAACAACTCTCTCAAAGCAGGCCAATTCCAAAAGTGGAAGCTTAAACTCTGCCATGAGTCGCAGCAAAATAGATCAGCAAAATCCACAATCCACTACAGCTTTGTTACTACAGCAGACGATGGATCTATATCCTCCTGGGACATCCACCAGTTGTATGCCTCCATTTTATTTTAGGGATTTCACATGCTCTTACTGCCGGCTCATCCAGCCTCCACGCACCAAGCACTGTCATGACTGTGATAAATGTGTCCTCCAATTTGATCATCATTGTGTTTGGCTTGGAACATGCATTGCTAAAAGGAACTACTGCAGATTTTGGTGGTACATATTC-GAACA-AACAGTTTTAA-CTG-TCTGGACTGTTGCTTTCTACATTCAGTTCTTTTATTTGGGCATCGTTGTATCCTGGTGGAAGTTTGCTATTGGTATTGTACTTTTGGTAGCATTGATATTAATCCTCGTGGTCCTGCTGCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGCCAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCA-GGGTTCATCCATTCAGCA-AAGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACAGAGGGGATTTTTTCTGGAAGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGTAATCTCCTGCCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTTAGTGTAATGCAAATAATATGGTAGCTATAATTTGTGTCTCATTTTTCATGTACAGTGTATGCGCATTTTTCTCCTAGAAAATCTGGATTGATCGATATCCATA-CCTTGATCTGAGTATGCTCAAATCTGGATTTTTTTTTCTAAAAAAAAAA] [+] EMBL AK072630 [CAGGTCGTCCCCACACGACAGCGCTCCGCCTCTCCTTCCCGACTCCACCGACCCCCCGCCGAGCTTTCTCGCCTCCCGCGAAGTCGCCACCGCGCGCTGCTCGTCCGTCGTCGCCGCTGCATCCGCCTCCTCCTCGTCCTCCCTACGGCCGTAGGGTGCGGCGGCGGAGGGGGCGACGATGCCACGCTGCGGAGCCGGAGGTCCCTGCGTGTGGATCCGGGCCCTATCCCAGCCGCAACGCCACGGGAGGAAGCCATGGCGGGGCGTGAGGGTCGTCGTGCTGCTGCTGCACGCGCTGTTCATCGGCGCCGTCTTCCTGCTCGATCCGACGCTCCAGAGGCAAATCCACGAGGCCAAGTGGTACATAATTCTATATGGGTTGCTGGTTTTACTTACCTTGGTACAATACCTATATACAGCCACTTCTTCTCCAGGATATTTACCTGATATGTTGACAGCTGGCTCAAGGATGCATGCAACCTTTATTAATACAACAACTCTCTCAAAGCAGGCCAATTCCAAAAGTGGAAGCTTAAACTCTGCCATGAGTCGCAGCAAAATAGATCAGCAAAATCCACAATCCACTACAGCTTTGTTACTACAGCAGACGATGGATCTATATCCTCCTGGGACATCCACCAGTTGTATGCCTCCATTTTATTTTAGGGATTTCACATGCTCTTACTGCCGGCTCATCCAGCCTCCACGCACCAAGCACTGTCATGACTGTGATAAATGTGTCCTCCAATTTGATCATCATTGTGTTTGGCTTGGAACATGCATTGCTAAAAGGAACTACTGCAGATTTTGGTGGTACATATTC GAACA AACAGTTTTAA CTG TCTGGACTGTTGCTTTCTACATTCAGTTCTTTTATTTGGGCATCGTTGTATCCTGGTGGAAGTTTGCTATTGGTATTGTACTTTTGGTAGCATTGATATTAATCCTCGTGGTCCTGCTGCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGCCAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCA GGGTTCATCCATTCAGCA AAGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACAGAGGGGATTTTTTCTGGAAGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGTAATCTCCTGCCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTTAGTGTAATGCAAATAATATGGTAGCTATAATTTGTGTCTCATTTTTCATGTACAGTGTATGCGCATTTTTCTCCTAGAAAATCTGGATTGATCGATATCCATA CCTTGATCTGAGTATGCTCAAATCTGGAT ] [+] EMBL BI813109 [ tGTGTGACATATTCGGACCACACCAGTTTTAACCTGTTCTGGACTG TGC TTCTACATTCAGTTCTTTTATTTGGGCATCGTTGTATCCTGGTGGAAG TTGCTATTGGTATTGTACTTTTGGTA CATTGATATTAATCCTCGTGGTCCTGCTGCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCCAAC ACATATGAAATTGCCAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCACGGGTTCATCCATTCAGCACAAGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACAGAGGGGATTTTTTCTGGAAGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGTAATCTCCTGCCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTTAGTGTAATGCAAATAATATGGTAGCTATAATTTGTGTCTCATTTTTCATGTACAGTGTATGCGCATTTTTCTCCTAGAAAATCTGGATTGATCGATATCCATACCCTTGATCTGAGTATGCTC AATCTGGATTTTTTTTTCTAAAAAAAAAA] consensusID : consensus_12700#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1225 fasta sequence [AGTCGCCTCTGCGCGCTGCTCGTCCGTCGTCGCCGCTGCATCCGCCTCCTCCTCGTCCTCCCTACGGCCGTAGGGTGCGGCGGCGGAGGGGGCGACGATGCCACGCTGCGGAGCCGGAGGTCCCTGCGTGTGGATCCGGGCCCTATCCCAGCCGCAACGCCACGGGAGGAAGCCATGGCGGGGCGTGAGGGTCGTCGTGCTGCTGCTGCACGCGCTGTTCATCGGCGCCGTCTTCCTGCTCGATCCGACGCTCCAGAGGCAAATCCACGAGGCCAAGTGGTACATAATTCTATATGGGTTGCTGGTTTTACTTACCTTGGTACAATACCTATATACAGCCACTTCTTCTCCAGGATATTTACCTGATATGTTGACAGCTGGCTCAAGGATGCATGCAACCTTTATTAATACAACAACTCTCTCAAAGCAGGCCAATTCCAAAAGTGGAAGCTTAAACTCTGCCATGAGTCGCAGCAAAATAGATCAGCAAAATCCACAATCCACTACAGCTTTGTTACTACAGCAGACGATGGATCTATATCCTCCTGGGACATCCACCAGGGATTTCACATGCTCTTACTGCCGGCTCATCCAGCCTCCACGCACCAAGCACTGTCATGACTGTGATAAATGTGTCCTCCAATTTGATCATCATTGTGTTTGGCTTGGAACATGCATTGCTAAAAGGAACTACTGCAGATTTTGGTGGTACATATTCGAACAAACAGTTTTAACTGTCTGGACTGTTGCTTTCTACATTCAGTTCTTTTATTTGGGCATCGTTGTATCCTGGTGGAAGTTTGCTATTGGTATTGTACTTTTGGTAGCATTGATATTAATCCTCGTGGTCCTGCTGCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGCCAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCAGGGTTCATCCATTCAGCAAAGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACAGAGGGGATTTTTTCTGGAAGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGTAATCTCCTGCCGGTGCTGTTAGGAGCTTGTGTATGCGCATTTTTCTCCTAGAAAATCTGGATTGATCGATATCCATACCTTGATCAGGGTATGCTCAAATCTGGATTTTTTTTTCTAAAAAACAAAAAAG] [+] EMBL CB655352 [AGTCGCCTCTGCGCGCTGCTCGTCCGTCGTCGCCGCTGCATCCGCCTCCTCCTCGTCCTCCCTACGGCCGTAGGGTGCGGCGGCGGAGGGGGCGACGATGCCACGCTGCGGAGCCGGAGGTCCCTGCGTGTGGATCCGGGCCCTATCCCAGCCGCAACGCCACGGGAGGAAGCCATGGCGGGGCGTGAGGGTCGTCGTGCTGCTGCTGCACGCGCTGTTCATCGGCGCCGTCTTCCTGCTCGATCCGACGCTCCAGAGGCAAATCCACGAGGCCAAGTGGTACATAATTCTATATGGGTTGCTGGTTTTACTTACCTTGGTACAATACCTATATACAGCCACTTCTTCTCCAGGATATTTACCTGATATGTTGACAGCTGGCTCAAGGATGCATGCAACCTTTATTAATACAACAACTCTCTCAAAGCAGGCCAATTCCAAAAGTGGAAGCTTAAACTCTGCCATGAGTCGCAGCAAAATAGATCAGCAAAATCCACAATCCACTACAGCTTTGTTACTACAGCAGACGATGGATCTATATCCTCCTGGGACATCCACCAGGGATTTCACATGCTCTTACTGCCGGCTCATCCAGCCTCCACGCACCAAGCACTGTCATGACTGTGATAAATGTGTCCTCCAATTTGATCATCATTGTGTTTGGCTTGGAACATGCATTGCTAAAAGGAACTACTGCAGATTTTGGT ] [-] EMBL CB655353 [ TCAGCAAAATCCACAATCCACTACAGCTTTGTTACTACAGCAGACGATGGATCTATATCCTCCTGGGACATCCACCAGGGATTTCACATGCTCTTACTGCCGGCTCATCCAGCCTCCACGCACCAAGCACTGTCATGACTGTGATAAATGTGTCCTCCAATTTGATCATCATTGTGTTTGGCTTGGAACATGCATTGCTAAAAGGAACTACTGCAGATTTTGGTGGTACATATTCGAACAAACAGTTTTAACTGTCTGGACTGTTGCTTTCTACATTCAGTTCTTTTATTTGGGCATCGTTGTATCCTGGTGGAAGTTTGCTATTGGTATTGTACTTTTGGTAGCATTGATATTAATCCTCGTGGTCCTGCTGCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGCCAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCAGGGTTCATCCATTCAGCAAAGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACAGAGGGGATTTTTTCTGGAAGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGTAATCTCCTGCCGGTGCTGTTAGGAGCTTGTGTATGCGCATTTTTCTCCTAGAAAATCTGGATTGATCGATATCCATACCTTGATCAGGGTATGCTCAAATCTGGATTTTTTTTTCTAAAAAACAAAAAAG] consensusID : consensus_12700#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 475 fasta sequence [GTATCCTGGTGGAGTTGGCTATTGGTATTGTACTTTGGGTAGCATTGATATTATCTCGTGGTCCTGCTGCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGCCAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCA-GGGTTCATCCA-TTCAGCAAAGGCA-TTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACA-GAGGGGATTTTTTCTGGAAGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGTAATCTCCTG-CCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTTAGTGTAATGCAAATAATATGGTAGCTATAATTTGTGTCTCATTTTTCATGTACAGTGTATGCGCATTTTTCTCCTAGAAAATCTGGATTGATCGAAAAAAAAGCGGC] [-] EMBL AU225615 [GTATCCTGGTGGAGTTGGCTATTGGTATTGTACTTTGGGTAGCATTGATATTATCTCGTGGTCCTGCTGCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGCCAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCA GGGTTCATCCA TTCAGCAAAGGCA TTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACA GAGGGGATTTTTTCTGGAAGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGTAATCTCCTG CCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTTAGTGTAATGCAAATAATATGGTAGCTATAATTTGTGTCTCATTTTTCATGTACAGTGTATGCGCATTTTTCTCCTAGAAAATCTGGATTGATCGAAAAAAAAGCGGC] [+] EMBL BI809832 [ cGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTA CACGGGTTCATCCACTTCAGCAAAGGCACTTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACACGAGGGGATTTTTTCTGGAAGCCGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACAT CCGAGATGTAATCTCCTGCCCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTTAGTGTAATGCCAATAATATGGTAGCTATAATTTGTGTCTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12700#0 ------------------------------------------------------------ consensus_12700#3 ------------------------------------------------------------ consensus_12700#1 CAGGTCGTCCCCACACGACAGCGCTCCGCCTCTCCTTCCCGACTCCACCGACCCCCCGCC 60 consensus_12700#2 ------------------------------------------------------------ consensus_12700#0 ----------ACCGACCCCCCGCCGAGCTTTCTCGCCTCCCGCGAAGTCGCCACCGCGCG 50 consensus_12700#3 ------------------------------------------------------------ consensus_12700#1 GAGCTTTCTCGCCTCCCGCGAAGTCGCCACCGCGCGCTGCTCGTCCGTCGTCGCCGCTGC 120 consensus_12700#2 ---------------------AGTCGCCTCTGCGCGCTGCTCGTCCGTCGTCGCCGCTGC 39 consensus_12700#0 CTGCTCGTCCGTCGTCGCCGCTGCATCCGCCTCCTCCTCGTCCTCCCTACGGCCGTAGGG 110 consensus_12700#3 ------------------------------------------------------------ consensus_12700#1 ATCCGCCTCCTCCTCGTCCTCCCTACGGCCGTAGGGTGCGGCGGCGGAGGGGGCGACGAT 180 consensus_12700#2 ATCCGCCTCCTCCTCGTCCTCCCTACGGCCGTAGGGTGCGGCGGCGGAGGGGGCGACGAT 99 consensus_12700#0 TGCGGCGGCGGAGGGGGCGACGATGCCACGCTGCGGAGCCGGAGGTCCCTGCGTGTGGAT 170 consensus_12700#3 ------------------------------------------------------------ consensus_12700#1 GCCACGCTGCGGAGCCGGAGGTCCCTGCGTGTGGATCCGGGCCCTATCCCAGCCGCAACG 240 consensus_12700#2 GCCACGCTGCGGAGCCGGAGGTCCCTGCGTGTGGATCCGGGCCCTATCCCAGCCGCAACG 159 consensus_12700#0 CCGGGCCCTATCCCAGCCGCAACGCCACGGGAGGAAGCCATGGCGGGGCGTGAGGGTCGT 230 consensus_12700#3 ------------------------------------------------------------ consensus_12700#1 CCACGGGAGGAAGCCATGGCGGGGCGTGAGGGTCGTCGTGCTGCTGCTGCACGCGCTGTT 300 consensus_12700#2 CCACGGGAGGAAGCCATGGCGGGGCGTGAGGGTCGTCGTGCTGCTGCTGCACGCGCTGTT 219 consensus_12700#0 CGTGCTGCTGCTGCACGCGCTGTTCATCGGCGCCGTCTTCCTGCTCGATCCGACGCTCCA 290 consensus_12700#3 ------------------------------------------------------------ consensus_12700#1 CATCGGCGCCGTCTTCCTGCTCGATCCGACGCTCCAGAGGCAAATCCACGAGGCCAAGTG 360 consensus_12700#2 CATCGGCGCCGTCTTCCTGCTCGATCCGACGCTCCAGAGGCAAATCCACGAGGCCAAGTG 279 consensus_12700#0 GAGGCAAATCCACGAGGCCAAGTGGTACATAATTCTATATGGGTTGCTGGTTTTACTTAC 350 consensus_12700#3 ------------------------------------------------------------ consensus_12700#1 GTACATAATTCTATATGGGTTGCTGGTTTTACTTACCTTGGTACAATACCTATATACAGC 420 consensus_12700#2 GTACATAATTCTATATGGGTTGCTGGTTTTACTTACCTTGGTACAATACCTATATACAGC 339 consensus_12700#0 CTTGGTACAATACCTATATACAGCCACTTCTTCTCCAGGATATTTACCTGATATGTTGAC 410 consensus_12700#3 ------------------------------------------------------------ consensus_12700#1 CACTTCTTCTCCAGGATATTTACCTGATATGTTGACAGCTGGCTCAAGGATGCATGCAAC 480 consensus_12700#2 CACTTCTTCTCCAGGATATTTACCTGATATGTTGACAGCTGGCTCAAGGATGCATGCAAC 399 consensus_12700#0 AGCTGGCTCAAGGATGCATGCAACCTTTATTAATACAACAACTCTCTCAAAGCAGGCCAA 470 consensus_12700#3 ------------------------------------------------------------ consensus_12700#1 CTTTATTAATACAACAACTCTCTCAAAGCAGGCCAATTCCAAAAGTGGAAGCTTAAACTC 540 consensus_12700#2 CTTTATTAATACAACAACTCTCTCAAAGCAGGCCAATTCCAAAAGTGGAAGCTTAAACTC 459 consensus_12700#0 TTCCAAAAGTGGAAGCTTAAACTCTGCCATGAGTCGCAGCAAAATAGATCAGCAAAATCC 530 consensus_12700#3 ------------------------------------------------------------ consensus_12700#1 TGCCATGAGTCGCAGCAAAATAGATCAGCAAAATCCACAATCCACTACAGCTTTGTTACT 600 consensus_12700#2 TGCCATGAGTCGCAGCAAAATAGATCAGCAAAATCCACAATCCACTACAGCTTTGTTACT 519 consensus_12700#0 ACAATCCACTACAGCTTTGTTACTACAGCAGACGATGGATCTATATCCTCCTGGGACATC 590 consensus_12700#3 ------------------------------------------------------------ consensus_12700#1 ACAGCAGACGATGGATCTATATCCTCCTGGGACATCCACCAGTTGTATGCCTCCATTTTA 660 consensus_12700#2 ACAGCAGACGATGGATCTATATCCTCCTGGGACATCCACCAG------------------ 561 consensus_12700#0 CACCAGGGATTTCACATGCTCTTACTGCCGGCTCATCCAGCCTCCACGCACCAAGCACTG 650 consensus_12700#3 ------------------------------------------------------------ consensus_12700#1 TTTTAGGGATTTCACATGCTCTTACTGCCGGCTCATCCAGCCTCCACGCACCAAGCACTG 720 consensus_12700#2 ------GGATTTCACATGCTCTTACTGCCGGCTCATCCAGCCTCCACGCACCAAGCACTG 615 consensus_12700#0 TCATGACTGTGATAAATGTGTCCTCCAATTTGATCATCATTGTGTTTGGCTTGGAACATG 710 consensus_12700#3 ------------------------------------------------------------ consensus_12700#1 TCATGACTGTGATAAATGTGTCCTCCAATTTGATCATCATTGTGTTTGGCTTGGAACATG 780 consensus_12700#2 TCATGACTGTGATAAATGTGTCCTCCAATTTGATCATCATTGTGTTTGGCTTGGAACATG 675 consensus_12700#0 CATTGCTAAAAGGAACTACTGCAGATTTTGGTGGTACATATTCGAACAAACAGTTTTAAC 770 consensus_12700#3 ------------------------------------------------------------ consensus_12700#1 CATTGCTAAAAGGAACTACTGCAGATTTTGGTGGTACATATTCGAACAAACAGTTTTAAC 840 consensus_12700#2 CATTGCTAAAAGGAACTACTGCAGATTTTGGTGGTACATATTCGAACAAACAGTTTTAAC 735 consensus_12700#0 TGTCTGGACTGTTGCTTTCTACATTCAGTTCTTTTATTTGGGCATCGTTGTATCCTGGTG 830 consensus_12700#3 -------------------------------------------------GTATCCTGGTG 11 consensus_12700#1 TGTCTGGACTGTTGCTTTCTACATTCAGTTCTTTTATTTGGGCATCGTTGTATCCTGGTG 900 consensus_12700#2 TGTCTGGACTGTTGCTTTCTACATTCAGTTCTTTTATTTGGGCATCGTTGTATCCTGGTG 795 *********** consensus_12700#0 GAAGTTTGCTATTGGTATTGTACTTTTGGTAGCATTGATATTAATCCTCGTGGTCCTGCT 890 consensus_12700#3 GA-GTTGGCTATTGGTATTGTACTTTGGGTAGCATTGATATTA--TCTCGTGGTCCTGCT 68 consensus_12700#1 GAAGTTTGCTATTGGTATTGTACTTTTGGTAGCATTGATATTAATCCTCGTGGTCCTGCT 960 consensus_12700#2 GAAGTTTGCTATTGGTATTGTACTTTTGGTAGCATTGATATTAATCCTCGTGGTCCTGCT 855 ** *** ******************* **************** ************** consensus_12700#0 GCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGC 950 consensus_12700#3 GCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGC 128 consensus_12700#1 GCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGC 1020 consensus_12700#2 GCCCTTGTTGATATTCCATGCTTATCTTGCTCTTACGAACCAAACAACATATGAAATTGC 915 ************************************************************ consensus_12700#0 CAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCAGGGTTCATCCATTCAGCAA 1010 consensus_12700#3 CAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCAGGGTTCATCCATTCAGCAA 188 consensus_12700#1 CAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCAGGGTTCATCCATTCAGCAA 1080 consensus_12700#2 CAGAAGGAAGCGGATTTCTTACCTAAGGGAGGTTCCTAGCAGGGTTCATCCATTCAGCAA 975 ************************************************************ consensus_12700#0 AGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACAGAGGGGATTTTTTCTGGA 1070 consensus_12700#3 AGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACAGAGGGGATTTTTTCTGGA 248 consensus_12700#1 AGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACAGAGGGGATTTTTTCTGGA 1140 consensus_12700#2 AGGCATTTGCAGAAATCTGTATGATCTTTGCATCTCTAAACAGAGGGGATTTTTTCTGGA 1035 ************************************************************ consensus_12700#0 AGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGT 1130 consensus_12700#3 AGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGT 308 consensus_12700#1 AGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGT 1200 consensus_12700#2 AGCAGTGCCCCCGCTGGAGGTACTACAAGCCAGAGCTAGACCTTACACATGCCGAGATGT 1095 ************************************************************ consensus_12700#0 AATCTCCTGCCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTT 1190 consensus_12700#3 AATCTCCTGCCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTT 368 consensus_12700#1 AATCTCCTGCCGGTGCTGTTAGGAGCTTGGTATATGCTCTATATCTGGACTCACTAGTTT 1260 consensus_12700#2 AATCTCCTGCCGGTGCTGTTAGGAGCTTG------------------------------- 1124 ***************************** consensus_12700#0 AGTGTAATGCAAATAATATGGTAGCTATAATTTGTGTCTCATTTTTCATGTACAGTGTAT 1250 consensus_12700#3 AGTGTAATGCAAATAATATGGTAGCTATAATTTGTGTCTCATTTTTCATGTACAGTGTAT 428 consensus_12700#1 AGTGTAATGCAAATAATATGGTAGCTATAATTTGTGTCTCATTTTTCATGTACAGTGTAT 1320 consensus_12700#2 -------------------------------------------------------TGTAT 1129 ***** consensus_12700#0 GCGCATTTTTCTCCTAGAAAATCTGGATTGATCGATATCCATACCTTGATCTGAGTATGC 1310 consensus_12700#3 GCGCATTTTTCTCCTAGAAAATCTGGATTGATCGAAAAAAAAGCGGC------------- 475 consensus_12700#1 GCGCATTTTTCTCCTAGAAAATCTGGATTGATCGATATCCATACCTTGATCTGAGTATGC 1380 consensus_12700#2 GCGCATTTTTCTCCTAGAAAATCTGGATTGATCGATATCCATACCTTGATCAGGGTATGC 1189 *********************************** * * * consensus_12700#0 TCAAATCTGGATTTTTTTTTCTTATGCATTTTAGATTCAGAAATGGTGAGAACTCTTATC 1370 consensus_12700#3 ------------------------------------------------------------ consensus_12700#1 TCAAATCTGGATTTTTTTTTCTAAAAAAAAAA---------------------------- 1412 consensus_12700#2 TCAAATCTGGATTTTTTTTTCTAAAAAACAAAAAAG------------------------ 1225 consensus_12700#0 AGCGTACCGGATGACGGATAGAATCCTGGGAATATATGGCCCTGTTTAGTTCAAAAAAAA 1430 consensus_12700#3 ------------------------------------------------------------ consensus_12700#1 ------------------------------------------------------------ consensus_12700#2 ------------------------------------------------------------ consensus_12700#0 AA 1432 consensus_12700#3 -- consensus_12700#1 -- consensus_12700#2 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||