Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12711 cluster # 12711       Sequences # 11       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12711#0 length = 1711 sequences # 8  
consensus_12711#1 length = 694 sequences # 1  
consensus_12711#2 length = 229 sequences # 1  
consensus_12711#3 length = 167 sequences # 1  

consensusID : consensus_12711#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1711
fasta sequence
                              [ACAAAAACAAACCCAGACACACAAACAGGCGCACACATCCCCATAGCCCCCAAAAACCAAAAAAAAGAGGAGCAAAAAAAGAAGAGAAGAAGAGAAAAAAAAAATCCCACGCCGCGTTGGCTCGCGATCCCCTCCTCCCCCCTCCCCTGTCGATTTGCTCCCCGGTGGTGGCCGCCCACGACGAACCCCCGCGCCGCGCGCGATTCGATCGCTCCTTCCGGATTCTGCTCCCGGACTCGGATCTCCTCCTCCTCGTCGAGCTCCTCCCGCCACTGCCCGTGTAGGTCTACCTGAGTTTGGGGGGCGGAGGGGGGGAGGGGAGGGGGAGGTGATGGGGATTGGCCGGGCGCGCTGGGTGGCGCTGCTTGTCGGCCTCGCGGCAGCGGCCGTGGTGGCGACGTTGGGTGCGTCCGAGGGCGACGCCGATCCGCTCTACAGAGCCTGTGTTGACGAATGCGAAAAGACGGGTTCCCTCCGAGAGACCTCCGTGAGGCACTGCCAAGTTCCAACTGATGACCATCCTGCTGATAAATCATGGTACGCACATGAACCATTGTACTTGCAGTGGAAAGAATGGAACTGCAAGAGTGAATGCAGATACCACTGTATGATGGAGAGGGAAAGTGAAAGGGAGCAACTTGGATTAGGGTCAGTTAAGTATCATGGCAAATGGCCTATGAAGCGTGCATCTGTGTTTCAGGAGCCTATTTCTGCTGCTCTTTCCGCGCTCTCTCTCCTTGTACAATTTAATGGGTGGCTATCTTTTTTCCTCCTGCTTTCTTACAAGCTGCCTCTTAGGCCTGAAACTCAAATGACATACTATGAATACACTGGCCTATGGCACATTTATGGTCTTCTGGCCATGAATGCATGGTTTTGGCGTGCCATCTATCACAGTTGTGATACAGTTTGGACAGAAAAGTTGTATTATTCATCATTTGCTGCTTTTATTGGGTACTCCCTTATCTTGGCAATATTGCGAACTCTAAATCTGAAGGATGAAGCTTCCAGAGTGATGGTGGCAGCTCCAATTCTGGCATTCACAACAACTCATATTTTGTATCTCAATTTCTATGAACTTGATAAAGGCCTAAACACAAAGGTTTGCACTGCTGCTAGCCTTGCTCAGTTCCTCCTATGGGCAGTATGGGCTGTCATGACAAAACATCCTTCATGTTTTAAGATCTTGTTTGTCATTATTGGAAACGTATTCTCAATAGTCTTGGAAACCTATGACATACCACCACGTTGGGGATATGTTGAT-GGCCGTGTATTTTGTGTTGCTATTTCTATTCCCCTCACATATCTCTGGTGG-AAATTTGCCAAGGAAGACGCTGAGATGCGCACTTCAGCAATCATCAAGAAAACAAGGTAGTGTTCAGCACAAGTGAATAGCNCAAGGATTTGAGCCTATGTGAAATCTTATGCTCGAGATTCAGTCTTACCTTGTAAAAATTTGATCGTTCATGTTCTTTCTAGGCAGCTTGTGAATTATGTTTTTTTCCATCCCTTTTTGCCTCAGCTTAGAGGTTTAGGGTTAATGCTTAGGGTGTGACTAGTCACTTTATATTCATTTTCTTGCAATCCCGACAGTGTAACACGGTATGCTTGTAGCTGTGGTAATGTAACAGAAGAACGTAGATTCGAAGCTTTCTGAATGTATCATTGTGATCTGTGGCATAATAATAATTCTGGTTCATGAAAAAAAAAA]

[+] EMBL AK073567             [ACAAAAACAAACCCAGACACACAAACAGGCGCACACATCCCCATAGCCCCCAAAAACCAAAAAAAAGAGGAGCAAAAAAAGAAGAGAAGAAGAGAAAAAAAAAATCCCACGCCGCGTTGGCTCGCGATCCCCTCCTCCCCCCTCCCCTGTCGATTTGCTCCACGGTGGTGGCCGCCCACGACGAACCCCCGCGCCGCGCGCGATTCGATCGCTCCTTCCGGATTCTGCTCCCGGACTCGGATCTCCTCCTCCTCGTCGAGCTCCTCCCGCCACTGCCCGTGTAGGTCTACCTGAGTTTGGGGGGCGGAGGGGGGGAGGGGAGGGGGAGGTGATGGGGATTGGCCGGGCGCGCTGGGTGGCGCTGCTTGTCGGCCTCGCGGCAGCGGCCGTGGTGGCGACGTTGGGTGCGTCCGAGGGCGACGCCGATCCGCTCTACAGAGCCTGTGTTGACGAATGCGAAAAGACGGGTTCCCTCCGAGAGACCTCCGTGAGGCACTGCCAAGTTCCAACTGATGACCATCCTGCTGATAAATCATGGTACGCACATGAACCATTGTACTTGCAGTGGAAAGAATGGAACTGCAAGAGTGAATGCAGATACCACTGTATGATGGAGAGGGAAAGTGAAAGGGAGCAACTTGGATTAGGGTCAGTTAAGTATCATGGCAAATGGCCTATGAAGCGTGCATCTGTGTTTCAGGAGCCTATTTCTGCTGCTCTTTCCGCGCTCTCTCTCCTTGTACAATTTAATGGGTGGCTATCTTTTTTCCTCCTGCTTTCTTACAAGCTGCCTCTTAGGCCTGAAACTCAAATGACATACTATGAATACACTGGCCTATGGCACATTTATGGTCTTCTGGCCATGAATGCATGGTTTTGGCGTGCCATCTATCACAGTTGTGATACAGTTTGGACAGAAAAGTTGTATTATTCATCATTTGCTGCTTTTATTGGGTACTCCCTTATCTTGGCAATATTGCGAACTCTAAATCTGAAGGATGAAGCTTCCAGAGTGATGGTGGCAGCTCCAATTCTGGCATTCACAACAACTCATATTTTGTATCTCAATTTCTATGAACTTGATAAAGGCCTAAACACAAAGGTTTGCACTGCTGCTAGCCTTGCTCAGTTCCTCCTATGGGCAGTATGGGCTGTCATGACAAAACATCCTTCATGTTTTAAGATCTTGTTTGTCATTATTGGAAACGTATTCTCAATAGTCTTGGAAACCTATGACATACCACCACGTTGGGGATATGTTGAT GGCCGTGTATTTTGTGTTGCTATTTCTATTCCCCTCACATATCTCTGGTGG AAATTTGCCAAGGAAGACGCTGAGAT                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB681620             [                                                                                  AGAGACCATGAGAAAAAAAAAATCCCACGCCGCGTTGGCTCGCGATCCCCTCCTCCCCCCTCCCCTGTCGATTTGCTCCCTCGTGGTGGCCGCCCACGACGAACCCCCGCGCCGCGCGCGATTCGATCGCTCCTTCCGGATTCTGCTCCCGGACTCGGATCTCCTCCTCCTCGTCGAGCTCCTCCCGCCACTGCCCGTGTAGGTCTACCTGAGTTTGGGGGGCGGAGGGGGGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL OSS3978A             [                                                                                                      AATCCCACGCCGCGTTGGCTCGCGATCCCCTCCTCCCCCCTCCCCTGTCGATTTGCTCCCCGGTGGTGGCCGCCCACGACGAACCCCCGCGCCGCGCGANTNTCGATCGCTCCTTCCGGATTCTGCTCCCGGACTCGGATCTCCTCCTCCTCGTCGAGCTCCTCCCGCCACTGCCCGTGTAGGTCTACCTGAGTTTGGGGGGCGGAGGGGGGGAGGGGAGGGGGAGGTGATGGGGATTGGCCGGGCGCGCTGGGTGGCGCTGCTTGTCGGCCTCGCGGCAG AGCCGTGGTGGCGACGTTGNGTGCGTCCGAGGGCGACGGCGATCCGNTCTACAGAGCCTGTNTTGACGAATGCGAAAAGACGGGTT CCTCCGAGAGAACTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CA764360             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        caaggggGGAACTGCAAGAGTGAATGCAGATACCACTGTATGATGGAGAGGGAAAGTGAAAGGGAGCAACTTGGATTAGGGTCAGTTAAGTATCATGGCAAATGGCCTATGAAGCGTGCATCTGTGTTTCAGGAGCCTGTTTCTGCTGCTCTTTCCGCGCTCTCTCTCCTTGTACAATTTAATGGATGGCTATCTTTTTTCCTCCTGCTTTCTTACAAGCTGCCTCTTAGGCCTGAAACTCAAATGACATAGTATGAATACACTGGCCTATGGCACATTTATGGTCTTCTGGCCATGAATGCATGGTTTTGGCGTGCCATCTATCACAGTTGTGATACAGTTTGGACAGAAAAGTTGTATTATTCATCATTTGCTGCTTTTATTGGGTACTCCCTTATCTTGGCAATATTGCGAACTCTAAATCTGAAGGATGAAGCTTCCAGAGTGATGGTGGCAGCTCCAATTCTTGCATTCACAACAACTCATAGTTTGTATCTCAATTTCTATGAACTTGATAAAGGCCTAAACACAAAGGTTTGCACTGCTGCTAGCCTTGCTCAGTTCCTCCTATGGGCAGTATGGGCTGTCATGACGAAACATCCTTCATGTTTTAAGATTTTATTTGNCATTATTGGAAGCGTATTCTCAATAATCTTGGAAACCTATGACATACCACCACGCTGGGGATGTGNTGATGGGCCGGGTATTCTGGGNTGCTATTTCTATT CCCTCACATATCTCTGGNGGNAAATTTGCCAAGGAAGACGCTGAGATGCGCACTTCAGCAATCATCAAG AAACAAGGTAGNGGTCAGCACAAGGGAA AGCNCAAGGATTTGGGCCTATGGGAAA CTTATGCTCGANA TCAGNCTTACC TGGAAAAATTTGATCGGTCATGGTC TTCTAG                                                                                                                                                                                                                                        ]
[-] EMBL CB681621             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTATTATTCATCATTTGCTGCTTTTATTGGGTACTCCCTTATCTTGGCAATATTGCGAACTCTAAATCTGAAGGATGAAGCTTCCAGAGTGATGGTGGCAGCTCCAATTCTGGCATTCACAACAACTCATATTTTGTATCTCAATTTCTATGAACTTGATAAAGGCCTAAACACAAAGGTTTGCACTGCTGCTAGCCTTGCTCAGTTCCTCCTATGGGCAGTATGGGCTGTCATGACAAAACATCCTTCATGTTTTAAGATCTTGTTTGTCATTATTGGAAACGTATTCTCAATAGTCTTGGAAACCTATGACATACCACCACGTTGGGGATATGTTGAT GGCCGTGTATTTTGTGTTGCTATTTCTATTCCCCTCACATATCTCTGGTGG AAATTTGCCAAGGAAGACGCTGAGATG                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CA759117             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CAACAACTCATATTTTGTATCTCAANTTCTATGAACTTGATAAAGGCCTAAACACAAAGGTNTGCACTGCTGCTAGCCTTGCTCAGTTCCTCCTATGGGCAGTATGGGCTGTCATGACAAAACATCCTTCATGTTTTAAGATCTTGTTTGTCATTATTGGAAACGTATTCTCAATAGTCTTGGAAACCTATGACATACCACCACGTTGGGGATATGTTGAT GGCCGTGTATTTTGTGTTGCTATTTCTATTCCCCTCACATATCTCTGGTGG AAATTTGCCAAGGAAGACGCTGAGATGCGCACTTCAGCAATCATCAAGAAAACAAGGTAGTGTTCAGCCCAAGTGAATAGCCCAAGGATTTGAGCCTATGTGAAATCTTATGCTCGAGATTCAGTCTTACCTTGTAAAAATTTGATCGTTCATGTTCTTTCTAGGCAGCTTGTGAATTATGTTTTTTTCCATCCCTTTTTGCCTCAGCTTAGAGGTTTAGGGTTAATGCTTAGGGTGTGACTAGTCCCTTTATATTCATTTTCTTGCAATCCCGACAGTGCAACACGGTATGCTTGTAGCTGTGGTAATGTAACAGAAGAACGTAGATTCGAAGCTTTCTGAATGTATCATTGTGATCTGTGGCATAATAATAATTCTGGTTCATGAAAAAAAAAA]
[+] EMBL BQ907522             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GGAAACGTATTCTCAATAGTCTTGGAAACCTATGACATACCACCACGTTGGGGATATGTTGAT GGCCGTGTATTTTGTGTTGCTATTTCTATTCCCCTCACATATCTCTGGTGG AAATTTGCCAAGGAAGACGCTGAGATGCGCACTTCAGCAATCATCAAGAAAACAAGGTAGTGTTCAGCACAAGTGAATAGCACAAGGATTTGAGCCTATGTGAAATCTTATGCTCGAGATTCAGTCTTACCTTGTAAAAATTTGATCGTTCATGTTCTTTCTAGGCAGCTTGTGAATTATGTTTTTTTCCATCCCTTTTTGCCTCAGCTCAGAGGTTTAGGGTTAATGCTTAGGGTGTGACTAGTCACTTTATATTCATTTTCTTGCAATCCCGACAGTGTAACACGGTATGCTTGTAGCTGTGGTAATGTAACAGAAGAACGTAGATTCGAAGCTTaaaaaa                                                     ]
[+] EMBL CA765817             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TAGGGTTAATGCTTAGGGTGTGACTAGT ACTTTATATTCATTTTCTTGTAATCCCGACAGTGTAACACGGTATGCTTGTAGCTGTGGTAATGTAACAGAGGAACGTAGATTCGAAGCTTTCTGAATGTATCATTGTGATCTGTGGCATAATAATAATTCTGGTT              ]


>consensus_12711#0 ACAAAAACAAACCCAGACACACAAACAGGCGCACACATCCCCATAGCCCCCAAAAACCAA AAAAAAGAGGAGCAAAAAAAGAAGAGAAGAAGAGAAAAAAAAAATCCCACGCCGCGTTGG CTCGCGATCCCCTCCTCCCCCCTCCCCTGTCGATTTGCTCCCCGGTGGTGGCCGCCCACG ACGAACCCCCGCGCCGCGCGCGATTCGATCGCTCCTTCCGGATTCTGCTCCCGGACTCGG ATCTCCTCCTCCTCGTCGAGCTCCTCCCGCCACTGCCCGTGTAGGTCTACCTGAGTTTGG GGGGCGGAGGGGGGGAGGGGAGGGGGAGGTGATGGGGATTGGCCGGGCGCGCTGGGTGGC GCTGCTTGTCGGCCTCGCGGCAGCGGCCGTGGTGGCGACGTTGGGTGCGTCCGAGGGCGA CGCCGATCCGCTCTACAGAGCCTGTGTTGACGAATGCGAAAAGACGGGTTCCCTCCGAGA GACCTCCGTGAGGCACTGCCAAGTTCCAACTGATGACCATCCTGCTGATAAATCATGGTA CGCACATGAACCATTGTACTTGCAGTGGAAAGAATGGAACTGCAAGAGTGAATGCAGATA CCACTGTATGATGGAGAGGGAAAGTGAAAGGGAGCAACTTGGATTAGGGTCAGTTAAGTA TCATGGCAAATGGCCTATGAAGCGTGCATCTGTGTTTCAGGAGCCTATTTCTGCTGCTCT TTCCGCGCTCTCTCTCCTTGTACAATTTAATGGGTGGCTATCTTTTTTCCTCCTGCTTTC TTACAAGCTGCCTCTTAGGCCTGAAACTCAAATGACATACTATGAATACACTGGCCTATG GCACATTTATGGTCTTCTGGCCATGAATGCATGGTTTTGGCGTGCCATCTATCACAGTTG TGATACAGTTTGGACAGAAAAGTTGTATTATTCATCATTTGCTGCTTTTATTGGGTACTC CCTTATCTTGGCAATATTGCGAACTCTAAATCTGAAGGATGAAGCTTCCAGAGTGATGGT GGCAGCTCCAATTCTGGCATTCACAACAACTCATATTTTGTATCTCAATTTCTATGAACT TGATAAAGGCCTAAACACAAAGGTTTGCACTGCTGCTAGCCTTGCTCAGTTCCTCCTATG GGCAGTATGGGCTGTCATGACAAAACATCCTTCATGTTTTAAGATCTTGTTTGTCATTAT TGGAAACGTATTCTCAATAGTCTTGGAAACCTATGACATACCACCACGTTGGGGATATGT TGATGGCCGTGTATTTTGTGTTGCTATTTCTATTCCCCTCACATATCTCTGGTGGAAATT TGCCAAGGAAGACGCTGAGATGCGCACTTCAGCAATCATCAAGAAAACAAGGTAGTGTTC AGCACAAGTGAATAGCNCAAGGATTTGAGCCTATGTGAAATCTTATGCTCGAGATTCAGT CTTACCTTGTAAAAATTTGATCGTTCATGTTCTTTCTAGGCAGCTTGTGAATTATGTTTT TTTCCATCCCTTTTTGCCTCAGCTTAGAGGTTTAGGGTTAATGCTTAGGGTGTGACTAGT CACTTTATATTCATTTTCTTGCAATCCCGACAGTGTAACACGGTATGCTTGTAGCTGTGG TAATGTAACAGAAGAACGTAGATTCGAAGCTTTCTGAATGTATCATTGTGATCTGTGGCA TAATAATAATTCTGGTTCATGAAAAAAAAAA



consensusID : consensus_12711#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence
                              [GAGCAAAAAAAGAAGAGAAGAAGAGAAAAAAAAAAAATCCCACGCCGCGTTGGCTCGCGATCCCCTCCTCCCCCCTCCCCTGTCGATTTGCTCCCCGGTGGTGGCCGCCCACGACGAACCCCCGCGCCGCGCGCGATTCGATCGCTCCTTCCGGATTCTGCTCCCGGACTCGGATCTCCTCCTCCTCGTCGAGCTCCTCCCGCCACTGCCCGTGTAGGTCTACCTGAGTTTGGGGGGCGGAGGGGGGGAGGGGANNNNNTNNTNNTTNTNTTTNTTTTTTTTTTTTTTTTTTTNNTNTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTNTTTTTTNTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTNTNTTTTNTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTNTTTTTTTTTTTTTTTTTTNTNNTTTTTTTTTTTTNTTTTTTTTTNTTTTNTTTNTTTTTTTTTTTTNNTTTTTTTTTTNNTTTTTTTTTTTTNTTTTTTNTTTTTTTTTTTTTTTTTTNTTTTTTTTNTTTNTTTTTTNNTTTTTNTTTTTTTTTTTTTNTNTTTTTTTTT]

[+] EMBL BE041089             [GAGCAAAAAAAGAAGAGAAGAAGAGAAAAAAAAAAAATCCCACGCCGCGTTGGCTCGCGATCCCCTCCTCCCCCCTCCCCTGTCGATTTGCTCCCCGGTGGTGGCCGCCCACGACGAACCCCCGCGCCGCGCGCGATTCGATCGCTCCTTCCGGATTCTGCTCCCGGACTCGGATCTCCTCCTCCTCGTCGAGCTCCTCCCGCCACTGCCCGTGTAGGTCTACCTGAGTTTGGGGGGCGGAGGGGGGGAGGGGANNNNNTNNTNNTTNTNTTTNTTTTTTTTTTTTTTTTTTTNNTNTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTNTTTTTTNTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTNTNTTTTNTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTNTTTTTTTTTTTTTTTTTTNTNNTTTTTTTTTTTTNTTTTTTTTTNTTTTNTTTNTTTTTTTTTTTTNNTTTTTTTTTTNNTTTTTTTTTTTTNTTTTTTNTTTTTTTTTTTTTTTTTTNTTTTTTTTNTTTNTTTTTTNNTTTTTNTTTTTTTTTTTTTNTNTTTTTTTTT]


>consensus_12711#1 GAGCAAAAAAAGAAGAGAAGAAGAGAAAAAAAAAAAATCCCACGCCGCGTTGGCTCGCGA TCCCCTCCTCCCCCCTCCCCTGTCGATTTGCTCCCCGGTGGTGGCCGCCCACGACGAACC CCCGCGCCGCGCGCGATTCGATCGCTCCTTCCGGATTCTGCTCCCGGACTCGGATCTCCT CCTCCTCGTCGAGCTCCTCCCGCCACTGCCCGTGTAGGTCTACCTGAGTTTGGGGGGCGG AGGGGGGGAGGGGANNNNNTNNTNNTTNTNTTTNTTTTTTTTTTTTTTTTTTTNNTNTTT TTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTNTTTTTTNTTTTTTTTTT NTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTT TTNTNTTTTNTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTT NNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTNTTTTTTTTTTTTTTTTT TNTNNTTTTTTTTTTTTNTTTTTTTTTNTTTTNTTTNTTTTTTTTTTTTNNTTTTTTTTT TNNTTTTTTTTTTTTNTTTTTTNTTTTTTTTTTTTTTTTTTNTTTTTTTTNTTTNTTTTT TNNTTTTTNTTTTTTTTTTTTTNTNTTTTTTTTT



consensusID : consensus_12711#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 229
fasta sequence
                              [TGCTTGTCGGCCTCGCGGCAGCGGCCGTGGTGGCGACGTTGGGTGCGTCCGAGGGCGACGCCGATCCGCTCTACAGGTATGTAGGGCTCGTGACTCCGTGGATTCTTTGTCCAGTGTTGCGACATCTCTTCAAAGATTTGGTGATTTGGCGAGGCTTGTGGGGGTGTGTGTGTGTTTTACGTTTGGTTCNAGGAGCTGATTGCGTGTGCAATGGAATCAGCGAGGGTGT]

[+] EMBL CF305546             [TGCTTGTCGGCCTCGCGGCAGCGGCCGTGGTGGCGACGTTGGGTGCGTCCGAGGGCGACGCCGATCCGCTCTACAGGTATGTAGGGCTCGTGACTCCGTGGATTCTTTGTCCAGTGTTGCGACATCTCTTCAAAGATTTGGTGATTTGGCGAGGCTTGTGGGGGTGTGTGTGTGTTTTACGTTTGGTTCNAGGAGCTGATTGCGTGTGCAATGGAATCAGCGAGGGTGT]


>consensus_12711#2 TGCTTGTCGGCCTCGCGGCAGCGGCCGTGGTGGCGACGTTGGGTGCGTCCGAGGGCGACG CCGATCCGCTCTACAGGTATGTAGGGCTCGTGACTCCGTGGATTCTTTGTCCAGTGTTGC GACATCTCTTCAAAGATTTGGTGATTTGGCGAGGCTTGTGGGGGTGTGTGTGTGTTTTAC GTTTGGTTCNAGGAGCTGATTGCGTGTGCAATGGAATCAGCGAGGGTGT



consensusID : consensus_12711#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 167
fasta sequence
                              [CTGCAGCTCAGAGGTTTAGGGTTAATGCTTAGGGTGTGACTAGTCCACCTTATATTCCTTTTCTTGCCCATCCCGACCGTGGTAACCCGGTATGCTTGTAGCTGGTGGTAATGTACCGAAGACGTAGATTCGAAGCTTTCTGAATGTATCCTTGTGATCTGTGGCAT]

[+] EMBL BI807553             [CTGCAGCTCAGAGGTTTAGGGTTAATGCTTAGGGTGTGACTAGTCCACCTTATATTCCTTTTCTTGCCCATCCCGACCGTGGTAACCCGGTATGCTTGTAGCTGGTGGTAATGTACCGAAGACGTAGATTCGAAGCTTTCTGAATGTATCCTTGTGATCTGTGGCAT]


>consensus_12711#3 CTGCAGCTCAGAGGTTTAGGGTTAATGCTTAGGGTGTGACTAGTCCACCTTATATTCCTT TTCTTGCCCATCCCGACCGTGGTAACCCGGTATGCTTGTAGCTGGTGGTAATGTACCGAA GACGTAGATTCGAAGCTTTCTGAATGTATCCTTGTGATCTGTGGCAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12711#0      ACAAAAACAAACCCAGACACACAAACAGGCGCACACATCCCCATAGCCCCCAAAAACCAA 60
consensus_12711#3      ------------------------------------------------------------
consensus_12711#1      ------------------------------------------------------------
consensus_12711#2      ------------------------------------------------------------
                                                                                   

consensus_12711#0      AAAAAAGAGGAGCAAAAAAAGAAGAGAAGAAGAGAAAAAAAAAATCCCACGCCGCGTTGG 120
consensus_12711#3      ------------------------------------------------------------
consensus_12711#1      ------------------------------------------------------------
consensus_12711#2      ------------------------------------------------------------
                                                                                   

consensus_12711#0      CTCGCGATCCCCTCCTCCCCCCTCCCCTGTCGATTTGCTCCCCGGTGGTGGCCGCCCACG 180
consensus_12711#3      ------------------------------------------------------------
consensus_12711#1      ------------------------------------------------------------
consensus_12711#2      ------------------------------------------------------------
                                                                                   

consensus_12711#0      ACGAACCCCCGCGCCGCGCGCGATTCGATCGCTCCTTCCGGATTCTGCTCCCGGACTCGG 240
consensus_12711#3      ------------------------------------------------------------
consensus_12711#1      ------------------------------------------------------------
consensus_12711#2      ------------------------------------------------------------
                                                                                   

consensus_12711#0      ATCTCCTCCTCCTCGTCGAGCTCCTCCCGCCACTGCCCGTGTAGGTCTACCTGAGTTTGG 300
consensus_12711#3      ------------------------------------------------------------
consensus_12711#1      ------------------------------------------------------------
consensus_12711#2      ------------------------------------------------------------
                                                                                   

consensus_12711#0      GGGGCGGAGGGGGGGAGGGGAGGGGGAGGTGATGGGGATTGGCCGGGCGCGCTGGGTGGC 360
consensus_12711#3      ------------------------------------------------------------
consensus_12711#1      ------------------------------------------------------------
consensus_12711#2      ------------------------------------------------------------
                                                                                   

consensus_12711#0      GCTGCTTGTCGGCCTCGCGGCAGCGGCCGTGGTGGCGACGTTGGGTGCGTCCGAGGGCGA 420
consensus_12711#3      ------------------------------------------------------------
consensus_12711#1      ------------------------------------------------------------
consensus_12711#2      ------------------------------------------------------------
                                                                                   

consensus_12711#0      CGCCGATCCGCTCTACAGAGCCTGTGTTGACGAATGCGAAAAGACGGGTTCCCTCCGAGA 480
consensus_12711#3      ------------------------------------------------------------
consensus_12711#1      ------------------------------------------------------------
consensus_12711#2      ------------------------------------------------------------
                                                                                   

consensus_12711#0      GACCTCCGTGAGGCACTGCCAAGTTCCAACTGATGACCATCCTGCTGATAAATCATGGTA 540
consensus_12711#3      ------------------------------------------------------------
consensus_12711#1      ------------------------------------------------------------
consensus_12711#2      ------------------------------------------------------------
                                                                                   

consensus_12711#0      CGCACATGAACCATTGTACTTGCAGTGGAAAGAATGGAACTGCAAGAGTGAATGCAGATA 600
consensus_12711#3      ------------------------------------------------------------
consensus_12711#1      ------------------------------------------------------------
consensus_12711#2      ------------------------------------------------------------
                                                                                   

consensus_12711#0      CCACTGTATGATGGAGAGGGAAAGTGAAAGGGAGCAACTTGGATTAGGGTCAGTTAAGTA 660
consensus_12711#3      ------------------------------------------------------------
consensus_12711#1      ------------------------------------------------------------
consensus_12711#2      ------------------------------------------------------------
                                                                                   

consensus_12711#0      TCATGGCAAATGGCCTATGAAGCGTGCATCTGTGTTTCAGGAGCCTATTTCTGCTGCTCT 720
consensus_12711#3      ------------------------------------------------------------
consensus_12711#1      ------------------------------------------------------------
consensus_12711#2      ------------------------------------------------------------
                                                                                   

consensus_12711#0      TTCCGCGCTCTCTCTCCTTGTACAATTTAATGGGTGGCTATCTTTTTTCCTCCTGCTTTC 780
consensus_12711#3      ------------------------------------------------------------
consensus_12711#1      ------------------------------------------------------------
consensus_12711#2      ------------------------------------------------------------
                                                                                   

consensus_12711#0      TTACAAGCTGCCTCTTAGGCCTGAAACTCAAATGACATACTATGAATACACTGGCCTATG 840
consensus_12711#3      ------------------------------------------------------------
consensus_12711#1      ------------------------------------------------------------
consensus_12711#2      ------------------------------------------------------------
                                                                                   

consensus_12711#0      GCACATTTATGGTCTTCTGGCCATGAATGCATGGTTTTGGCGTGCCATCTATCACAGTTG 900
consensus_12711#3      ------------------------------------------------------------
consensus_12711#1      ------------------------------------------------------------
consensus_12711#2      ------------------------------------------------------------
                                                                                   

consensus_12711#0      TGATACAGTTTGGACAGAAAAGTTGTATTATTCATCATTTGCTGCTTTTATTGGGTACTC 960
consensus_12711#3      ------------------------------------------------------------
consensus_12711#1      ------------------------------------------------------------
consensus_12711#2      ------------------------------------------------------------
                                                                                   

consensus_12711#0      CCTTATCTTGGCAATATTGCGAACTCTAAATCTGAAGGATGAAGCTTCCAGAGTGATGGT 1020
consensus_12711#3      ------------------------------------------------------------
consensus_12711#1      ---------------------------------------------------GAGCAAAAA 9
consensus_12711#2      ------------------------------------------------------------
                                                                                   

consensus_12711#0      GGCAGCTCCAATTCTGGCATTCACAACAACTCATATTTTGTATCTCAATTTCTATGAACT 1080
consensus_12711#3      ------------------------------------------------------------
consensus_12711#1      AAGAAGAGAAGAAGAGAAAAAAAAAAAATCCCACGCCGCGTTGGCTCGCGATCCCCTCCT 69
consensus_12711#2      ------------------------------------------------------------
                                                                                   

consensus_12711#0      TGATAAAGGCCTAAACACAAAGGTTTGCACTGCTGCTAGCCTTGCTCAGTTCCTCCTATG 1140
consensus_12711#3      ------------------------------------------------------------
consensus_12711#1      CCCCCCTCCCCTGTCGATTTGCTCCCCGGTGGTGGCCGCCCACGACGAACCCCCGCGCCG 129
consensus_12711#2      ------------------------------------------------------------
                                                                                   

consensus_12711#0      GGCAGTATGGGCTGTCATGACAAAACATCCTTCATGTTTTAAGATCTTGTTTGTCATTAT 1200
consensus_12711#3      ------------------------------------------------------------
consensus_12711#1      CGCGCGATTCGATCGCTCCTTCCGGATTCTGCTCCCGGACTCGGATCTCCTCCTCCTCGT 189
consensus_12711#2      ------------------------------------------------------------
                                                                                   

consensus_12711#0      TGGAAACGTATTCTCAATAGTCTTGGAAACCTATGACATACCACCACGTTGGGGATATGT 1260
consensus_12711#3      ------------------------------------------------------------
consensus_12711#1      CGAGCTCCTCCCGCCACTGCCCGTGTAGGTCTACCTGAGTTTGGGGGGCGGAGGGGGGGA 249
consensus_12711#2      ------------------------------------------------------------
                                                                                   

consensus_12711#0      TGATGGCCGTGTATTTTGTGTTGCTATTTCTATTCCCCTCACATATCTCTGGTGGAAATT 1320
consensus_12711#3      ------------------------------------------------------------
consensus_12711#1      GGGGANNNNNTNNTNNTTNTNTTTNTTTTTTTTTTTTTTTTTTTNNTNTTTTTTTTTTTT 309
consensus_12711#2      ------------------------------------------------------------
                                                                                   

consensus_12711#0      TGCCAAGGAAGACGCTGAGATGCGCACTTCAGCAATCATCAAGAAAACAAGGTAGTGTTC 1380
consensus_12711#3      ------------------------------------------------------------
consensus_12711#1      TTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTNTTTTTTNTTTTTTTTTTNTTTTTTTT 369
consensus_12711#2      ------------------------------------------------------------
                                                                                   

consensus_12711#0      AGCACAAGTGAATAGCNCAAGGATTTGAGCCTATGTGAAATCTTATGCTCGAGATTCAGT 1440
consensus_12711#3      ------------------------------------------------------------
consensus_12711#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTNTNTTTT 429
consensus_12711#2      ------------------------------------------------------------
                                                                                   

consensus_12711#0      CTTACCTTGTAAAAATTTGATCGTTCATGTTCTTTCTAGGCAGCTTGTGAATTATGTTTT 1500
consensus_12711#3      ------------------------------------------------------------
consensus_12711#1      NTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTT 489
consensus_12711#2      ----------------------------TGCTTGTCGGCCTCGCGGCAGCGGCCGTGGTG 32
                                                                                   

consensus_12711#0      TTTCCATCCCTTTTTGCCTCAGCTTAGAGGTTTAGGGTTAATGCTTAGGGTGTGACTAGT 1560
consensus_12711#3      ----------------CTGCAGCTCAGAGGTTTAGGGTTAATGCTTAGGGTGTGACTAGT 44
consensus_12711#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTNTTTTTTTTTTTTTTTTTTNTNNTTTT 549
consensus_12711#2      GCGACGTTGGGTGCGTCCGAGGGCGACGCCGATCCGCTCTACAGGTATGTAGGGCTCGTG 92
                                                       *    *       *              

consensus_12711#0      C-ACTTTATATTCATTTTCTTGCA-ATCCCGACAGTG-TAACACGGTATGCTTGTAGCTG 1617
consensus_12711#3      CCACCTTATATTCCTTTTCTTGCCCATCCCGACCGTGGTAACCCGGTATGCTTGTAGCTG 104
consensus_12711#1      TTTTTTTTNTTTTTTTTTNTTTTNTTTNTTTTTTTTTTTTNNTTTTTTTTTTNNTTTTTT 609
consensus_12711#2      ACTCCGTGGATTCTTTGTCCAGTGTTGCGACATCTCTTCAAAGATTTGGTGATTTGGCGA 152
                             *   **  ** *                            *       *     

consensus_12711#0      -TGGTAATGTAACAGAAGAACGTAGATTCGAAGCTTTCTGAATGTATCATTGTGATCTGT 1676
consensus_12711#3      GTGGTAATGTACCGAAG--ACGTAGATTCGAAGCTTTCTGAATGTATCCTTGTGATCTGT 162
consensus_12711#1      TTTTTTNTTTTTTNTTTTTTTTTTTTTTTTTTNTTTTTTTTNTTTNTTTTTTNNTTTTTN 669
consensus_12711#2      GGCTTGTGGGGGTGTGTGTGTGTTTTACGTTTGGTTCNAGGAGCTGATTGCGTGTGCAAT 212
                           *                 *           **        *               

consensus_12711#0      GGCATAATAATAATTCTGGTTCATGAAAAAAAAAA 1711
consensus_12711#3      GGCAT------------------------------ 167
consensus_12711#1      TTTTTTTTTTTTTNTNTTTTTTTTT---------- 694
consensus_12711#2      GGAATCAGCGAGGGTGT------------------ 229
                           *                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)