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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12717#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 802 fasta sequence
[AGCCAGCGAGCGAGCAAAGCAAGATGATGATGACCATGTCGTCGCCGGCGGCCACCGCCTGCCTCCCCGCCTCGCCCTCCCTCGGGCCCCGCTCCCTTCGCCTCCTCCGCGGAGCTCTGGCCCGGAGGGGCAGCCGCCGGCTCGGGGTGGTGCGCGCGGCCAGCGCGGAG-GTGGCCGCGCCCGACGCCGCCGCCGCCGCTCCGGGCTACACCTCCGACTCCCTCATCCTCTACTTCAAGGCGGAGGGTACCATGGAGGAGAGGGCCATCCCCAAGATCACCCAGGCCCTCGAGGGGGTGGAGGGGGTGAGCGACCTGGAGGTGCTCATCGAGGAAGGCATCGGAAGTGTTGTGTTGACAAAGGAGACGACGGTGCAAGCTACCGGGGTGGCCTCAAACCTGGTAGAAGCCATCCAGGGAGCTGGCTTCAAGCTGCAAACACTTAGCCTCAGCTTCGACGATTTTAATGAGGATGCAGCCACAGTCGCAGGAGAGGATGACGACCAAGCCACAGAGTGAGTGACTATGTCATGTCAACAGCTGCTGATCAGAGCTACTTCAATTTGCGGAATGCATACGATTTGCTCATGTTATTGGCACTCTTCAACATTTTGTTTAGTTGCTGCACAGCACTCCCTCTCCTTGTAATCTCTGAGGAAGTTCGTTGAAGTTCTAGCTTATGGCCAACAAAGGAGGAAATGGTGTTTTTACTTGTGTATTCTGATTCAGAGAAAGTGTTCTGATTTTTTTTCAAGGTCCAAACAAAAAAGGGGAGATGTTTCAGCTAAAAAAAAAAAAAAAAA]
[+] EMBL OSS15423A [AGCCAGCGAGCGAGCAAAGCAAGATGATGATGACCATGTCGTCGCCGGCGGCCACCGCCTGCCTCCCCGCCTCGCCCTCCCTCGGGCCCCGCTCCCTTCGCCTCCTCCGCGGAGCTCTGGCCCGGA GGGCAGCCGNCGGCTCGGGGTGGTGCGCGCGGCCAGCG GGAG GTGGCCGCGCCCGACGNCGNCGNCGNCGNTCCGGGCTACACCTCCGACTCCCTCATCCTCTACTTCAAGGCGGAGGGTACCATGGAGGAGAGGGCCATNCCCAAGATCACCCAGGNCCTCGAGGGGTTGGAGGTGGTGAGNGACCTGGAGGTGGTC ]
[+] EMBL CB683803 [ AGCAAAGCAAGATGATGATGACCATGTCGTCGCCGGCGGCCACCGCCTGCCTCCCCGCCTCGCCCTCCCTCGGGCCCCGCTCCCTTCGCCTCCTCCGCGGAGCTCTGGCCCGGAGGGGCAGCCGCCGGCTCGGGGTGGTGCGCGCGGCCAGCGCGGAG GTGGCCGCGCCCGACGCCGCCGCCGCCGCTCCGGGCTACACCTCCGACTCCCTCATCCTCTACTTCAAGGCGGAGGGTACCATGGAGGAGAGGGCCATCCCCAAGATCACCCAGGCCCTCGAGGGGGTGGAGGGGGTGAGCGACCTGGAGGTGCTCATCGAGGAAGGCATCGGAAGTGTTGTGTTGACAAAGGAGACGACGGTGCAAGCTACCGGGGTGGCCTCAAACCTGGTAGAAGCCATCCAGGGAGCTGGCTTCAAGCTGCAAACACTTAGCCTCAGCTTCGACGATTTTAATGAGGATGCAGCCACAGTCGCAGGAGAGGATGACGACCAAGCCACAGAGTGAGTGACTATGTCATGTCAACAGCTGCTGATCAGAGCTACTTCAATTTGCGGAATGCATACGATTTGCTCATGTTATTGGCACTCTTCAACATTTTGTTTAGTTGCTGCACAGCACTCCCTCTCCTTGTAATCTCTGAGGAAGTTCGTTGAAGTTCTAGCTTATGGCCAACAAAGGAGGAAATGGTGTTTTTACTTGTGTATTCTGATTCAGAGAAAGTGTTCTGATTTTTT ]
[+] EMBL OSS12318A [ AGCAAGATGATGATGACCATGTCGTCGCCGGC GNCACCGNCTGCCTCCCCGNCTCGCCCTCCCTCGGGCCCCGCTCCCTTCGCCTCCTCCGCGGAGTTCTGGCCCGGA GGGCAGNCGCCGGCTCGGGGTGGTGCGCGCGGCCAG G GGAGTGTGGCCGCGACCGACGNCGACGNCGNCGCTCCGGGCTACACCTCCGACTCCCTCATCCTCTACTTCAAGGCGTAGGGTACCATGGAGGAGAGGGCCATCCCCAAGATCACCCAGGCCCTCGAGGGGGTGGAGGGGGTGAGCGACCTGGAGGTGCTCATCGAGGAAGGCATCGGAAGTGTTGTGTTGACAAAGNNGACGACGGTG ]
[+] EMBL CB673734 [ ACCATGTCCTTGCCGGCGGCCACCGCCTGCCTCCCCGCCTCGCCCTCCCTCGGGCCCCGCTCCCTTCGCCTCCTCCGCGGAGCTCTGGCCCGGAGGGGCAGCCGCCGGCTCGGGGTGGTGCGCGCGGCCAGCGCGGAG GTGGCCGCGCCCGACGCCGCCGCCGCCGCTCCGGGCTACACCTCCGACTCCCTCATCCTCTACTTCAAGGCGGAGGGTACCATGGAGGAGAGGGCCATCCCCAAGATCACCCAGGCCCTCGAGGGGGTGGAGGGGGTGAGCGACCTGGAGGTGCTCATCGAGGAAGGCATCGGAAGTGTTGTGTTGACAAAGGAGACGACGGTGCAAGCTACCGGGGTGGCCTCAAACCTGGTAGAAGCCATCCAGGGAGCTGGCTTCAAGCTGCAAACACTTAGCCTCAGCTTCGACGATTTTAATGAGGATGCAGCCACAGTCGCAGGAGAGGATGACGACCAACCCACAGAGTGAGTGACTATGTCATGTCAACAGCTGCTGATCAGAGCTACTTCAATTTGCGGAATGCATACGATTTGCTCATGTTATTGGCACTCTTCAACATTTTGTTTAGTTGCTGCACAGCACTCCCTCTCCTTGTAATCTCTGAGGAAGTTCGTTGAAGTTCTAGCTTATGGCCAACAAAGGAGGAAATGGTGTTTTTACTTGTGT ]
[-] EMBL CB683355 [ CCGCTCCCTTCGCCTCCTCCGCGGAGCTCTGGCCCGGAGGGGCAGCCGCCGGCTCGGGGTGGTGCGCGCGGCCAGCGCGGAG GTGGCCGCGCCCGACGCCGCCGCCGCCGCTCCGGGNTACACCTCCGACTCCCTCATCCTCTACTTCAAGGCGGAGGGTACCATGGAGGAGAGGGCCATCCCCAAGATCACCCAGGCCCTCGAGGGGGTGGAGGGGGTGAGCGACCTGGAGGTGCTCATCGAGGAAGGCATCGGAAGTGTTGTGTTGACAAAGGAGACGACGGTGCAAGCTACCGGGGTGGCCTCAAACCTGGTAGAAGCCATCCAGGGAGCTGGCTTCAAGCTGCAAACACTTAGCCTCAGCTTCGACGATTTTAATGAGGATGCAGCCACAGTCGCAGGAGAGGATGACGCCCAAGCCACAGAGTGAGTGACTATGTCATGTCAACAGCTGCTGATCAGAGCTACTTCAATTTGCGGAATGCATCCGATTTGCTCATGTTATTGGCCCTCTTCAACATTTTGTTTAGTCGCTGCACAGCACTCCCTCTCCTTGTAATCTCTGAGGAAGTTCGTTGAAGTTCTAGCTTATGGCCACCAAAGGAGGAAACGGTGTTTTTCCTTGTGTATTTTGATTCAGAGAAAGTGTTCTGATTTTTTTTCAAGGTCCAAACAACAAAGGG ]
[-] EMBL CB673735 [ TTCGCCTCCTCCGCGGAGCTCTGGCCCGGAGGGGCAGCCGCCGGCTCGGGGTGGTGCGCGCGGCCAGCGCGGAG GTGGCCGCGCCCGACGCCGCCGCCGCCGCTCCGGGNTACACCTCCGACTCCCTCATCCTCTACTTCAAGGCGGAGGGTACCATGGAGGAGAGGGCCATCCCCAAGATCACCCAGGCCCTCGAGGGGGTGGAGGGGGTGAGCGACCTGGAGGTGCTCATCGAGGAAGGCATCGGAAGTGTTGTGTTGACAAAGGAGACGACGGTGCAAGCTACCGGGGTGGCCTCAAACCTGGTAGAAGCCATCCAGGGAGCTGGCTTCAAGCTGCAAACACTTAGCCTCAGCTTCGACGATTTTAATGAGGATGCAGCCACAGTCGCAGGAGAGGATGACGACCAAGCCACAGAGTGAGTGACTATGTCATGTCAACAGCTGCTGATCAGAGCTACTTCAATTTGCGGAATGCATACGATTTGCTCATGTTATTGGCACTCTTCAACATTTTGTTTAGTTGCTGCACAGCACTCCCTCTCCTTGTAATCTCTGAGGAAGTTCGTTGAAGTTCTAGCTTATGGCCAACAAAGGAGGAAATGGTGTTTTTACTTGTGTATTCAGATTCAGAGAAAGTGTTCTGA ]
[+] EMBL AU174104 [ CGAGGGGGTGGAGGGGGTGAGCGACCTGGAGGTGCTCATCGAGGAAGGCATCGGAAGTGTTGTGTTGACAAAGGAGACGACGGTGCAAGCTACCGGGGTGGCCTCAAACCTGGTAGAAGCCATCCAGGGAGCTGGCTTCAAGCTGCAAACACTTAGCCTCAGCTTCGACGATTTTAATGAGGATGCAGCCACAGTCGCAGGAGAGGATGACGACCAAGCCACAGAGTGAGTGACTATGTCATGTCAACAGCTGCTGATCAGAGCTACTTCAATTTGCGGAATGCATACGATTTGCTCATGTTATTGGCACTCTTCAACATTTTGTTTAGTTGCTGCACAGCACTCCCTCTCCTTGTAATCTCTGAGGAAGTTCGTTGAAGTTCTAGCTTATGGCCAACAAAGGAGGAAATGGTGTTTTTAaaaaaa ]
[+] EMBL AU198228 [ GCTACCGGGGTGGCCTCAAACCTGGTAGAAGCCATCCAGGGAGCTGGCTTCAAGCTGCAAACACTTAGCCTCAGCTTCGNCGATTTTAATGAGGATGCAGCCCCAGTCGCAGGAGAGGATGACGACCAAGCCNCAGAGTGAGTGACTATGTCATGTCAACAGCTGCTGATCAGAGCTACTTCAATTTGCGGAATGCATACGATTTGCTCATGTTATTGGCNCTCTTCAACATTTTGTTTAGTTGCTGCACAGCACTCCCTCTCCTTGTAATCTCTGAGGAAGTTCGTTGAAGTTCTAGCTTATGGCCAACAAAGGAGGAAATGGTGTTTTTACTTGTGTATTCTGATTCANAGAAAGTGTTCTGATTTTTTTTCAAGGTCCATATTAATTTGTTGAGATGTTTCAGCTAAAAAAAAAAAAAAAAA]
[+] EMBL AU096162 [ nGAGTGAGTGACTATGTCATGTCAACAGCTGCTGATCAGAGCTACTTCAATTTGCGGAATGCATACGATTTGCTCATGTTATTGGCACTCTTCAACATTTTGTTTAGTTGCTGCACAGCACTCCCTTTCCTTGTAATCTCTGAGGAAGTTCGTTGAAGTTCTAGCTTATGGCCAACAAAGGAGGAAATGGTGTTTTTACTTGTGTATTCTGATTCAGAGAAAGTGTTCTGATTTTTTTTCAAGGTCCAAAAAAAAA ]
consensusID : consensus_12717#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 473 fasta sequence
[NGAGTGATGATGACATGTCGTCGCCGGCGGCCACCGCCTGCCTCCCCGCCTCGCCCTCCCTCGGGCCCCGCTCCCTTCGCCTCCTCCGCGGANCTCTGGCCCGGANGGGCAGCCGCCGGCTCGGGGTGGTGCGCGCGGCCAGCGCGGANGTGGCCGCGCCCGACGCCGCCGCCGCCGCTCCGGGCTACACCTCCGACTCCCTCATCCTCTACTTCAAGGCGGANGGTACCATGGAGGANANGGCCATCCCCAAGATCACCCAGGCCCTCGAGGGGGTGGAGGGGGTGAGCGACCTGNAAGTGCTCATCGANGAAGCATCGGAAGTGTTGTGTTGACAAANGAGACNACGGTGCAANCTACCGGGGTGGGCTCAAACCTGGTTNAAACCATCCANGGAACTTGCTTCNACTGCAAANNTTNNCCTCAAGCTTTCCACAATTTTAATGAAGATGCANCCACNTCGCNNGAANAGG]
[+] EMBL AA753192 [NGAGTGATGATGACATGTCGTCGCCGGCGGCCACCGCCTGCCTCCCCGCCTCGCCCTCCCTCGGGCCCCGCTCCCTTCGCCTCCTCCGCGGANCTCTGGCCCGGANGGGCAGCCGCCGGCTCGGGGTGGTGCGCGCGGCCAGCGCGGANGTGGCCGCGCCCGACGCCGCCGCCGCCGCTCCGGGCTACACCTCCGACTCCCTCATCCTCTACTTCAAGGCGGANGGTACCATGGAGGANANGGCCATCCCCAAGATCACCCAGGCCCTCGAGGGGGTGGAGGGGGTGAGCGACCTGNAAGTGCTCATCGANGAAGCATCGGAAGTGTTGTGTTGACAAANGAGACNACGGTGCAANCTACCGGGGTGGGCTCAAACCTGGTTNAAACCATCCANGGAACTTGCTTCNACTGCAAANNTTNNCCTCAAGCTTTCCACAATTTTAATGAAGATGCANCCACNTCGCNNGAANAGG]
consensusID : consensus_12717#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence
[GGGAGGCTTGGGCTTTTCAAGCTGCGCCAACACCTTGAGCCTCAGCTGTGCGACGATGTTTGATATGAGGATCCCCCCCCCTGCCCACGGAGAGGATGGTACGACCCAGCCCCCGAGTGGAGTGGACTGATGTGCATGGTGCCACCGCTGGCTGGATGCCGAGTCTGACTGTGCCATGTGTCGCGGAATGGCATACGATTGTGGCTGCATGGTGTGATTGGGCACTGCTGTCACCTTTGTGTTTAGTTCTGCCCACCACTCCCTCTCCTTGTAATCTCTGAGGAAGTTCGCTTGAAGTTCTAGCTTATGCCCCCCCAAGGAGGAAATGGTGTTTTTACTTGTGTATTCTGATTCCGAGAAATGTTGCGGATTTTTTTGCCAGGTCCCTGATGAATTTGGTTGGAGATCTTTCCAGC]
[+] EMBL BI802563 [GGGAGGCTTGGGCTTTTCAAGCTGCGCCAACACCTTGAGCCTCAGCTGTGCGACGATGTTTGATATGAGGATCCCCCCCCCTGCCCACGGAGAGGATGGTACGACCCAGCCCCCGAGTGGAGTGGACTGATGTGCATGGTGCCACCGCTGGCTGGATGCCGAGTCTGACTGTGCCATGTGTCGCGGAATGGCATACGATTGTGGCTGCATGGTGTGATTGGGCACTGCTGTCACCTTTGTGTTTAGTTCTGCCCACCACTCCCTCTCCTTGTAATCTCTGAGGAAGTTCGCTTGAAGTTCTAGCTTATGCCCCCCCAAGGAGGAAATGGTGTTTTTACTTGTGTATTCTGATTCCGAGAAATGTTGCGGATTTTTTTGCCAGGTCCCTGATGAATTTGGTTGGAGATCTTTCCAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12717#0 AGCCAGCGAGCGAGCAAAGCAAGATGATGATGACCATGTCGTCGCCGGCGGCCACCGCCT 60
consensus_12717#1 --------------------NGAGTGATGATGAC-ATGTCGTCGCCGGCGGCCACCGCCT 39
consensus_12717#2 --------------------GGGAGGCTTGGGCTTTTCAAGCTGC--GCCAACACCTTGA 38
* * * * * ** ** ****
consensus_12717#0 GCCTCCCCGCCTCGCCCTCCCTCGGGCCCCGCTCCCTTCGCCTCCTCCGCGGAGCTC-TG 119
consensus_12717#1 GCCTCCCCGCCTCGCCCTCCCTCGGGCCCCGCTCCCTTCGCCTCCTCCGCGGANCTC-TG 98
consensus_12717#2 GCCTCAGCTGTGCGACGATGTTTGATATGAGGATCCCCCCCCCTGCCCACGGAGAGGATG 98
***** * ** * * * * ** * ** ** **** **
consensus_12717#0 GCCCGGAGGGGCAGCCGC-CGGCTCGGGGTGGTGCGCGCGG--CCAGCGCGGA--GGTGG 174
consensus_12717#1 GCCCGGANGGGCAGCCGC-CGGCTCGGGGTGGTGCGCGCGG--CCAGCGCGGA--NGTGG 153
consensus_12717#2 GTACGACCCAGCCCCCGAGTGGAGTGGACTGATGTGCATGGTGCCACCGCTGGCTGGATG 158
* ** ** *** ** ** ** ** ** ** *** *** * * *
consensus_12717#0 CCGCGCCCGACGCCGCCGC-CGCCGCTCCGGGCTACACCTCCGACTCCCTCATCCTCTAC 233
consensus_12717#1 CCGCGCCCGACGCCGCCGC-CGCCGCTCCGGGCTACACCTCCGACTCCCTCATCCTCTAC 212
consensus_12717#2 CCGAGTCTGACTGTGCCATGTGTCGCGGAATGGCATACGATTG-TGGCTGCATGGTGTGA 217
*** * * *** *** * *** * * ** * * *** * *
consensus_12717#0 TTCAAGGCGGAGGGTACCATGGAGGAGAGGGCCATCCCCAAGATCACC--CAGGCCCTCG 291
consensus_12717#1 TTCAAGGCGGANGGTACCATGGAGGANANGGCCATCCCCAAGATCACC--CAGGCCCTCG 270
consensus_12717#2 TTGGGCACTGCTGTCACCTTTGTGTTTAGTTCTGCCCACCACTCCCTCTCCTTGTAATCT 277
** * * * *** * * * * * ** * * * * * * **
consensus_12717#0 AGGGGGTGGAGGGGGTGAGCGACCTGGAGGTGCTCATCGAGGAAGGCATCGGAAGTGTTG 351
consensus_12717#1 AGGGGGTGGAGGGGGTGAGCGACCTGNAAGTGCTCATCGANGAAG-CATCGGAAGTGTTG 329
consensus_12717#2 CTGAGGAAGTTCGCTTGAAGTTCTAGCTTATGCCCCCCCAAGGAG------GAAATGGTG 331
* ** * * *** * * *** * * * * ** *** ** **
consensus_12717#0 TGTTGACAAAGGAGACGACGGTGCAAGCTACCGGGGTGGCCTCAAACCTGGTAGAAGCCA 411
consensus_12717#1 TGTTGACAAANGAGACNACGGTGCAANCTACCGGGGTGGGCTCAAACCTGGTTNAAACCA 389
consensus_12717#2 TTTTTACTTGTGT-ATTCTGATTCCGAGAAATGTTGCGGATTT---TTTTGCCAGGTCC- 386
* ** ** * * * * * * * * ** * * * **
consensus_12717#0 TCCAGGGAGCTGGCTTCAAGCTGCAAACACTTAGCCTCAGCTT-CGACGATTTTAATGAG 470
consensus_12717#1 TCCANGGAACTTGCTTCNA-CTGCAAANNTTNNCCTCAAGCTTTCCACAATTTTAATGAA 448
consensus_12717#2 -CTGATGAATTTGGTTGGA------GATCTTTCCAGC----------------------- 416
* ** * * ** * * *
consensus_12717#0 GATGCAGCCACAGTCGCAGGAGAGGATGACGACCAAGCCACAGAGTGAGTGACTATGTCA 530
consensus_12717#1 GATGCANCCACN-TCGCNNGAANAGG---------------------------------- 473
consensus_12717#2 ------------------------------------------------------------
consensus_12717#0 TGTCAACAGCTGCTGATCAGAGCTACTTCAATTTGCGGAATGCATACGATTTGCTCATGT 590
consensus_12717#1 ------------------------------------------------------------
consensus_12717#2 ------------------------------------------------------------
consensus_12717#0 TATTGGCACTCTTCAACATTTTGTTTAGTTGCTGCACAGCACTCCCTCTCCTTGTAATCT 650
consensus_12717#1 ------------------------------------------------------------
consensus_12717#2 ------------------------------------------------------------
consensus_12717#0 CTGAGGAAGTTCGTTGAAGTTCTAGCTTATGGCCAACAAAGGAGGAAATGGTGTTTTTAC 710
consensus_12717#1 ------------------------------------------------------------
consensus_12717#2 ------------------------------------------------------------
consensus_12717#0 TTGTGTATTCTGATTCAGAGAAAGTGTTCTGATTTTTTTTCAAGGTCCAAACAAAAAAGG 770
consensus_12717#1 ------------------------------------------------------------
consensus_12717#2 ------------------------------------------------------------
consensus_12717#0 GGAGATGTTTCAGCTAAAAAAAAAAAAAAAAA 802
consensus_12717#1 --------------------------------
consensus_12717#2 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||