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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12732#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 754 fasta sequence
[TCCTTCCTAGTCCCTCCAGATCCAACACCTCCTCCCTCAGATCCACAGGCGGCAGCACCGCGGGCGATCGGAGGAGAGGGTGGTGGC-GGGCTCGGGGCGCGGGC-GGC-GTGCTCGGGTGTGGGCGATAGC-GCTCGGGTGC-GGGCGACGGAGGAGAGTGC-GGCGGCGAGCTCGGGGCGC-GGGTGGTGAGGTCAGGCGTGGGCGGCGGCGCTCGGGCACGGGTGACGGAGGAGAGGACGGCGTGAGGTCAGGCGTAGGCGGCCCGGGCGGCGGCGCTCGGCGACAGGGAGGCGCGAGGCGGCGGATCCGGCGACGGGGAGGCGCGAGGTGGCGGATCCGGCGATGGGGAGGTGCGAGGTGGCGGATCCGGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGCGGTGGTGGCGAGGCGGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCAACGGTGATGGTGCAGGGGACTTCAAGGACGACGACGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTGTATTTGGATTGATGCTTGGTGTTCAAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAATGCTTGGGAGAATGGAAATTTTTAGCTGTAAAAAAAAAAAAAAAGNGGAAAA]
[+] EMBL CA754251 [TCCTTCCTAGTCCCTCCAGATCCAACACCTCCTCCCTCAGATCCACAGGCGGCAGCACCGCGGGCGATCGGAGGAGAGGGTGGTGGC GGACTCGGGGCGCGGGC GGC GTGCTCGGGTGTGGGCGATAGC GCTCGGGTGC GGGCGACGGAGGAGAGTGC GGCGGCGAGCTCGGGGCGC GGGTGGTGAGGTCAGGCGTGGGCGGCGGCGCTCGGGCACGGGTGACGGAGGAGAGGACGGCGTGAGGTCAGGCGTAGGCGGCTCGGGCGGCGGCGCTCGGCGACAGGGAGGCGCGAGGCGGCGGATCCGGCGACGGGGAGGCGCGAGGTGGCGGATCCGGCGATGGGGAGGTGCGAGGTGGCGGATCCGGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGCGGTGGTGGCGAGGCGGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGATCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGTGAGCAACGTCATCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGCTAGTGGAAACGGTGATGGAGCAGGGGACTTTCAGGACGACGACCCCGGCGACAGAGGTTACCGGTATTTGTGATGCTTGTAATATTTGg ]
[+] EMBL AK107705 [ ACCTCCTCCCTCAGATCCACAGGCGGCAGCACCGCGGGCGATCGGAGGAGAGGGTGGTGGC GGGCTCGGGGCGCGGGC GGC GTGCTCGGGTGTGGGCGATAGC GCTCGGGTGC GGGCGACGGAGGAGAGTGC GGCGGCGAGCTCGGGGCGC GGGTGGTGAGGTCAGGCGTGGGCGGCGGCGCTCGGGCACGGGTGACGGAGGAGAGGACGGCGTGAGGTCAGGCGTAGGCGGCCCGGGCGGCGGCGCTCGGCGACAGGGAGGCGCGAGGCGGCGGATCCGGCGACGGGGAGGCGCGAGGTGGCGGATCCGGCGATGGGGAGGTGCGAGGTGGCGGATCCGGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGCGGTGGTGGCGAGGCGGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCAACGGTGATGGTGCAGGGGACTTCAAGGACGACGACGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTGTATTTGGATTGATGCTTGGTGTTCAAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAATGCTTGGGAGAATGGAAAT ]
[-] EMBL CB678998 [ TCCCTCAGATCCACAGGCGGCAGCACCGCGGGCGATCGGAGGAGAGGGTGGTGGC GGGCTCGGGGCGCGGGC GGC GTGCTCGGGTGTGGGCGATAGC GCTCGGGTGC GGGCGACGGAGGAGAGTGC GGCGGCGAGCTCGGGGCGC GGGTGGTGAGGTCAGGCGTGGGCGGCGGCGCTCGGGCACGGGTGACGGAGGAGAGGACGGCGTGAGGTCAGGCGTAGGCGGCCCGGGCGGCGGCGCTCGGCGACAGGGAGGCGCGAGGCGGCGGATCCGGCGACGGGGAGGCGCGAGGTGGCGGATCCGGCGATGGGGAGGTGCGAGGTGGCGGATCCGGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGCGGTGGTGGCGAGGCGGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCAACGGTGATGGTGCAGGGGACTTCAAGGACGAAGACGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTGTATTTGG ]
[+] EMBL AU183856 [ AGATCCACAGGCGGCAGCACCGCGGGCGATCGGAGGAGAGGGTGGTGGCAGGGCTCGGGGCGCGGGCAGGCAGTGCTCGGGTGTGGGCGATAGCAGCTCGGGTGCAGGGCGACGGAGGAGAGTGCAGGCGGCGAGCTCGGGGCGCAGGGTGGTGAGGTCAGGCGTGGGCGGCGGCGCTCGGGCACGGGTGACGGAGGAGAGGACGGCGTGAGGTCAGGCGTAGGCGGCCCGGGCGGCGGCGCTCGGCGACAGGGAGGCGCGAGGCGGCGGATCCGGCGACGGGGAGGCGCGAGGTGGCGGATCCGGCGATGGGGAGGTGCGAGGTGGCGGATCCGGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGCGGTGGTGGCNAGGCGGANGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCG ]
[+] EMBL CB678997 [ ATCCACCGGCGGCAGCACCGCGGGCGATCGGAGGAGAGGGTGGTGGC GGGCTCGGGGCGCGGGC GGC GTGCTCGGGTGTGGGCGATAGC GCTCGGGTGC GGGCGACGGAGGAGAGTGC GGCGGCGAGCTCGGGGCGC GGGTGGTGAGGTCAGGCGTGGGCGGCGGCGCTCGGGCACGGGTGACGGAGGAGAGGACGGCGTGAGGTCAGGCGTAGGCGGCCCGGGCGGCGGCGCTCGGCGACAGGGAGGCGCGAGGCGGCGGATCCGGCGACGGGGAGGCGCGAGGTGGCGGATCCGGCGATGGGGAGGTGCGAGGTGGCGGATCCGGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGCGGTGGTGGCGAGGCGGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCAACGGTGATGGTGCAGGGGACTTCAAGGACGACGACGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTG ]
[+] EMBL AU085936 [ GCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCAACGGTGATGGTGCAGGGGACTTCAAGGACGACGACGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTGTATTTGGATTGATGCTTGGTGTTCAAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAATGCTTGGGAGAATGGAAATTTTTAGCTGTAA ]
[+] EMBL AU075715 [ CAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCAACGGTGATGGTGCAGGGGACTTCAAGGACGACGACGCCGGCGACA CGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTGTATTTGGATTGATGCTTGGTGTTCAAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAATGCTTGGGAGAATGGAAATTTTTAGCTGTAAAAAAAAAAAAAAAGNGGAAAA]
[+] EMBL AU058284 [ TGCAGGGGACTTCAAGGACGACGACGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTGTATTTGGATTGATGCTTGGTGTTCAAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAATGCTTGGGAGAATGGAAATTTTTAGCTGTAAAnn ]
consensusID : consensus_12732#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 507 fasta sequence
[GCGGCGGATCCGGCGACGGGAGGCGCGAGGTGCGGATCCGGCGATGGGGAGGTGCGAGGTGCGGATCCGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGGTCTCTCTCCCCCACTCCTCACTCCTCCTCTTCCCCCGCCGCCACCACCCCCTCTCCCTCTCTCAAATCTAGCGTTGCGTGGCTTTGCACGGTGGTGGCGAGCGGAGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCCACGGTGATGGTGCACGGGGACTTCAAGGACGACGACGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCCTTGTATTTGGATTGATGCTTGGTGTTCCAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAAAAAAAAAAAAAAAAA]
[+] EMBL BI809160 [GCGGCGGATCCGGCGACGGGAGGCGCGAGGTGCGGATCCGGCGATGGGGAGGTGCGAGGTGCGGATCCGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGGTCTCTCTCCCCCACTCCTCACTCCTCCTCTTCCCCCGCCGCCACCACCCCCTCTCCCTCTCTCAAATCTAGCGTTGCGTGGCTTTGCACGGTGGTGGCGAGCGGAGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCCACGGTGATGGTGCACGGGGACTTCAAGGACGACGACGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCCTTGTATTTGGATTGATGCTTGGTGTTCCAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAAAAA ]
[+] EMBL AU094173 [ AAGGACGACGACGCCGGCGACA NGGTTCTCTGTATTTNTAATGCTTGTAATATTTGTAATGATATTTGTNAAGCATTGTATTTGGATTNATGCTTGGTGTTCAAATTTTTTGTTAAATGTGTGGATATTTTTAATGCTTGAAAAAAAAAAAAAAAAA]
consensusID : consensus_12732#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 200 fasta sequence
[CGACAGAGACGACGTGACGAGGTGCGACCGGGGACTCGCGAGCAGCGTCGTCGAAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGTAGTGGCAACGTGATGGTGCAGGGGACTTCAAGGACGACGACTGCCGGCACAGCTTCTCTGATTTGTGATGTCTGTATATATGTGATGTATATTAGCTTGTATGTATGTAGTTCG]
[+] EMBL AA750987 [CGACAGAGACGACGTGACGAGGTGCGACCGGGGACTCGCGAGCAGCGTCGTCGAAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGTAGTGGCAACGTGATGGTGCAGGGGACTTCAAGGACGACGACTGCCGGCACAGCTTCTCTGATTTGTGATGTCTGTATATATGTGATGTATATTAGCTTGTATGTATGTAGTTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12732#1 ------------------------------------------------------------
consensus_12732#2 ------------------------------------------------------------
consensus_12732#0 TCCTTCCTAGTCCCTCCAGATCCAACACCTCCTCCCTCAGATCCACAGGCGGCAGCACCG 60
consensus_12732#1 ------------------------------------------------------------
consensus_12732#2 ------------------------------------------------------------
consensus_12732#0 CGGGCGATCGGAGGAGAGGGTGGTGGCGGGCTCGGGGCGCGGGCGGCGTGCTCGGGTGTG 120
consensus_12732#1 ------------------------------------------------------------
consensus_12732#2 ------------------------------------------------------------
consensus_12732#0 GGCGATAGCGCTCGGGTGCGGGCGACGGAGGAGAGTGCGGCGGCGAGCTCGGGGCGCGGG 180
consensus_12732#1 -----------------------------GCGGCGGATCCGGCGACGGGAGGCGCGAGGT 31
consensus_12732#2 ------------------------------------------------------------
consensus_12732#0 TGGTGAGGTCAGGCGTGGGCGGCGGCGCTCGGGCACGGGTGACGGAGGAGAGGACGGCGT 240
consensus_12732#1 GCGGATCCGGCGATGGGGAGGTGCGAGGTGCGGATCCGCGACGGGAAGGCGCAAGGCGGC 91
consensus_12732#2 ------------------------------------------------------------
consensus_12732#0 GAGG-TCAGGCGTAGGCGGCCCGGGCGGCGGCGCTCGGCGACAGGGAGGCGCGAGGCGGC 299
consensus_12732#1 GGATCCACAGGTCTCTCTCCCCCACTCCTCACTCCTCCTCTTCCCCCGCCGCCACCACCC 151
consensus_12732#2 ------------------------------------------------------------
consensus_12732#0 GGATCCGGCGACGGGGAGGCGCGAGGTGGCGGATCCGGCGATGGGGAGGTGCGAGGTGGC 359
consensus_12732#1 CCTCTCCCTCTCTCAAATCTAGCGTTGCGTGGCTTTGCA-CGGTGGTGGCGAGC--GGAG 208
consensus_12732#2 ------------------------------------------------------------
consensus_12732#0 GGATCCGGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGCGGTGGTGGCGAGGCGGAGG 419
consensus_12732#1 CGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCT 268
consensus_12732#2 -----------------------CGACAGAGACGACGTGACGAGGTGCGAC-CGGGGACT 36
consensus_12732#0 CGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCT 479
* *** * ** ** * ** * * * * *** **
consensus_12732#1 CGGCAGCAGCGTCGTCGA-GGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCCAC 327
consensus_12732#2 CGCGAGCAGCGTCGTCGAAGGCGGAGGCGGTTGAGGCCGACGGGGCTCG-TAGTGGCAAC 95
consensus_12732#0 CGGCAGCAGCGTCGTCGA-GGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCAAC 538
** ************** ****************************** ******* **
consensus_12732#1 GGTGATGGTGCACGGGGACTTCAAGGACGACGAC-GCCGGCGACAGCGGTTCTCTGTATT 386
consensus_12732#2 G-TGATGGTGCA-GGGGACTTCAAGGACGACGACTGCCGGC-ACAGC--TTCTCTG-ATT 149
consensus_12732#0 GGTGATGGTGCA-GGGGACTTCAAGGACGACGAC-GCCGGCGACAGCGGTTCTCTGTATT 596
* ********** ********************* ****** ***** ******* ***
consensus_12732#1 TGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCCTTGTATTTGGATTGATGCTTG 446
consensus_12732#2 TGTGATGTCTGTA-TATATGTGATG-TATATTAGCTTGTATGTATGTAGTTCG------- 200
consensus_12732#0 TGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTGTATTTGGATTGATGCTTG 656
******* **** *** ******* *** * * ***** * * * *
consensus_12732#1 GTGTTCCAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAAAAAAAAAAAAAAAA 506
consensus_12732#2 ------------------------------------------------------------
consensus_12732#0 GTGTTCAAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAATGCTTGGGAGAATG 716
consensus_12732#1 A------------------------------------- 507
consensus_12732#2 --------------------------------------
consensus_12732#0 GAAATTTTTAGCTGTAAAAAAAAAAAAAAAGNGGAAAA 754
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||