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Oryza sativa
cluster # 12733 cluster # 12733       Sequences # 11       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12733#0 length = 1863 sequences # 8  
 consensus_12733#1 length = 1028 sequences # 2  
consensus_12733#2 length = 294 sequences # 1  
consensusID : consensus_12733#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1863
fasta sequence 
                              [CTCCCTTCCCCTCCCGCCGCGAAGCCACCAGCGCCACCAGCTTCCACGCCTCCACTGCCGCCACGAGAGCCGAACCACGCAGACCTAAGCCAGAGAGATCGCGAGAGGGAGCCTCCGCTCCTTCGCTTAGCGGCGGCGGAGACCATGGCGAGCTCCGGGGAGGAAGGGCGGGTGGTGGTGGACCTCCGCTCGGCGGCGGAGTCGGCGGGCGGCGGCGGCGGCGACGAGGAGGCCCACGCCGCGCCGCTCCACGAGATCGAGTCCCTTTGCATGCGCTGCGGCGACAACGGCACCACGAGGCTTCTGATGACCATGATTCCGCACTTCCGGGAGGTGGTTCTGATGGCTTTCGAGTGCCCGCATTGCGGTGAGAGGAACAATGAGGTTCAGTTTGCTGGACAGCTCCAGCCGAAGGGATGTTGTTACCGTTTGGAGGTCCCGCGCGGGCAGAACGAGATACTGAACCGTCAGGTTGTGAAATCTGATTCAGCAACTATTAAGATTCCAGAACTGGACTTTGAGATCCCTCCAGAAGCTCAACGTGGATCACTTTCAACAGTGGAAGGGATTATTATGCGAGCTGTGGATGAGCTGCAGGCACTTCAAGATGAAAGAAAGAAAGTGGATCCTCAAAAGGCCGAAGCTATTGATAAATTTTTAGCAAAATTGAGATCTCTTGGATTAGGAGAAGCTGCTTTCACCTTTGTTCTTGATGATCCTGCTGGAAATAGCTTCATTGAAAACCAGAATGCACCTTCATCAGATCCTTTGTTATCTGTGAGATTCTATGAAAGGATGCGTGAGCAACAGGCAGCACTTGGTTTTCTTGTTGAACCATCCACAGAAGAACCTGGGGATCAGCCTGTTAATCATGCTTCAACTGTGGAAGGGAACTCTGAGGTGTTGCAGGAGCCCCACGGTTCGGTTGGAGCTGTTGCAGGTCGCCGTGCTATAGCTCAAGGAAACCCTGATGAAGTTGCTGCAGCGCTGTGCAGATATTCAGCACCAGAAGAGGTTGATACTTTGCCATCAACATGTGGGGCCTGTGGAACTGAGTGTGTCACTCGTTTCTTTGCTACAAAAATCCCATATTTTCGTGAGGTTATTGTTATGGCAACAACATGCGACATGTGCGGCTATCGCAACTCAGAGTTGAAGCCTGGTGGTGAAATCCCAGCCAAAGGAAAGAAAATTACACTACGTGTGCAGAACGGAAAAGATCTTACACGTGATGTCATAAAGTCAGATTCAGCTGGCGTAAAAGTACCTGAACTCGAGTTGGAGCTAGCAAGTGGAACATTGGGTGGTATT-GTTACAAC--AG-TTGAAGGTTTAATTGTGAAAATATG-CGAGGCT-CTGCAGAGAGT-GCATGGAT-TCCA-TTTGGGTGA-TAGCACA-CT-GGA-AT-GGAAAAAGAAG-AA-ATGGGAGGATTTCAACGATAGATTATCCAAGCTTCTAAGTTTACAAGA-GCCTTGGACTTTAATTATCGATGATGGATTGGCAGCTTCATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGAC-AACCAGCTAACCATTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGACATGGACACATCGTCTGCTGACGCCGCCTACAACACCACCAACCCATAATGTACTCAATGTTGTAACATGTGATATTATCAAATATACTTATTGTGCTCCATGTTGTAGTAAGTTGCGATATTTCTCATTTTAAATCCTCAAGTTTTGTGTTAGCCATAGCTTTTGTTTCTGAGACGATCGAAGATATTCAGTTGACCAAATTTGCTTTATCAGAACGTTTCTTGTTTCTTTGCTTAATTACATTGAACGCCACCGGCATTG]

[+] EMBL AK069434             [CTCCCTTCCCCTCCCGCCGCGAAGCCACCAGCGCCACCAGCTTCCACGCCTCCACTGCCGCCACGAGAGCCGAACCACGCAGACCTAAGCCAGAGAGATCGCGAGAGGGAGCCTCCGCTCCTTCGCTTAGCGGCGGCGGAGACCATGGCGAGCTCCGGGGAGGAAGGGCGGGTGGTGGTGGACCTCCGCTCGGCGGCGGAGTCGGCGGGCGGCGGCGGCGGCGACGAGGAGGCCCACGCCGCGCCGCTCCACGAGATCGAGTCCCTTTGCATGCGCTGCGGCGACAACGGCACCACGAGGCTTCTGATGACCATGATTCCGCACTTCCGGGAGGTGGTTCTGATGGCTTTCGAGTGCCCGCATTGCGGTGAGAGGAACAATGAGGTTCAGTTTGCTGGACAGCTCCAGCCGAAGGGATGTTGTTACCGTTTGGAGGTCCCGCGCGGGCAGAACGAGATACTGAACCGTCAGGTTGTGAAATCTGATTCAGCAACTATTAAGATTCCAGAACTGGACTTTGAGATCCCTCCAGAAGCTCAACGTGGATCACTTTCAACAGTGGAAGGGATTATTATGCGAGCTGTGGATGAGCTGCAGGCACTTCAAGATGAAAGAAAGAAAGTGGATCCTCAAAAGGCCGAAGCTATTGATAAATTTTTAGCAAAATTGAGATCTCTTGGATTAGGAGAAGCTGCTTTCACCTTTGTTCTTGATGATCCTGCTGGAAATAGCTTCATTGAAAACCAGAATGCACCTTCATCAGATCCTTTGTTATCTGTGAGATTCTATGAAAGGATGCGTGAGCAACAGGCAGCACTTGGTTTTCTTGTTGAACCATCCACAGAAGAACCTGGGGATCAGCCTGTTAATCATGCTTCAACTGTGGAAGGGAACTCTGAGGTGTTGCAGGAGCCCCACGGTTCGGTTGGAGCTGTTGCAGGTCGCCGTGCTATAGCTCAAGGAAACCCTGATGAAGTTGCTGCAGCGCTGTGCAGATATTCAGCACCAGAAGAGGTTGATACTTTGCCATCAACATGTGGGGCCTGTGGAACTGAGTGTGTCACTCGTTTCTTTGCTACAAAAATCCCATATTTTCGTGAGGTTATTGTTATGGCAACAACATGCGACATGTGCGGCTATCGCAACTCAGAGTTGAAGCCTGGTGGTGAAATCCCAGCCAAAGGAAAGAAAATTACACTACGTGTGCAGAACGGAAAAGATCTTACACGTGATGTCATAAAGTCAGATTCAGCTGGCGTAAAAGTACCTGAACTCGAGTTGGAACTAGCAAGTGGAACATTGGGTGGTATT GTTACAAC  AG TTGAAGGTTTAATTGTGAAAATATG CGAGGCT CTGCAGAGAGT GCATGGAT TCCA TTTGGGTGA TAGCACA CT GGA AT GGAAAAAGAAG AA ATGGGAGGATTTCAACGATAGATTATCCAAGCTTCTAAGTTTACAAGA GCCTTGGACTTTAATTATCGATGATGGATTGGCAGCTTCATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGAC AACCAGCTAACCATTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGACATGGACACATCGTCTGCTGACGCCGCCTACAACACCACCAACCCATAATGTACTCAATGTTGTAACATGTGATATTATCAAATATACTTATTGTGCTCCATGTTGTAGTAAGTTGCGATATTTCTCATTTTAAATCCTCAAGTTTTGTGTTAGCCATAGCTTTTGTTTCTGAGACGATCGAAGATATTCAGTTGACCAAATTTGCTTTATCAGAACGTTTCTTGTTTCTTTGCTTAATTACATTGAACGCCACCGGCATTG]
[+] EMBL CB638618             [                                            CACGCCTCCACTGCCGCCACGAGAGCCGAACCACGCAGACCTAAGCCAGAGAGATCGCGAGAGGGAGCCTCCGCTCCTTCGCTTAGCGGCGGCGGAGACCATGGCGAGCTCCGGGGAGGAAGGGCGGGTGGTGGTGGACCTCCGCTCGGCGGCGGAGTCGGCGGGCGGCGGCGGCGGCGACNAGGAGGCCCACGCCGCGCCGCTCCACGAGATCGAGTCCCTTTGCATGCGCTGCGGCGACAACGGCACCACGAGGCTTCTGATGACCATGATTCCGCACTTCCGGGAGGTGGTTCTGATGGCTTTCGAGTGCCCGCATTGCGGTGAGAGGAACAATGAGGTTCAGTTTGCTGGACAGCTCCAGCCGAAGGGATGTTGTTACCGTTTGGAGGTCCCGCGCGGGCAGAACGAGATACTGAACCGTCAGGTTGTGAAATCTGATTCAGCAACTATTAAGATTCCAGAACTGGACTTTGAGATCCCTCCAGAAGCTCAACGTGGATCACTTTCAACAGTGGAAGGGATTATTATGCGAGCTGTGGATGAGCTGCAGGCACTTCAAGATGAAAGAAAGAAAGTGGATCCTCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB647064             [                                                                                                                         TTCGCTTAGCGGCGGCGGAGACCATGGCGAGCTCCGGGGAGGAAGGGCGGGTGGTGGTGGACCTCCGCTCGGCGGCGGAGTCGGCGGGCGGCGGCGGCGGCGACGAGGAGGCCCACGCCGCGCCGCTCCACGAGATCGAGTCCCTTTGCATGCGCTGCGGCGACAACGGCACCACGAGGCTTCTGATGACCATGATTCCGCACTTCCGGGAGGTGGTTCTGATGGCTTTCGAGTGCCCGCATTGCGGTGAGAGGAACAATGAGGTTCAGTTTGCTGGACAGCTCCAGCCGAAGGGATGTTGTTACCGTTTGGAGGTCCCGCGCGGGCAGAACGAGATACTGAACCGTCAGGTTGTGAAATCTGATTCAGCAACTATTAAGATTCCAGAACTGGACTTTGAGATCCCTCCAGAAGCTCAACGTGGATCACTTTCAACAGTGGAAGGGATTATTATGCGAGCTGTGGATGAGCTGCAGGCACTTCAAGATGAAAGAAAGAAAGTGGATCCTCAAAAGGCCGAAGCTATTGATAAATTTTTAGCAAAATTGAGATCTCTTGGATTAGGAGAAGCTGCTTTCACCTTTGTTCTTGATGATCCTGCTGGAAATAGCTTCATTGAAAACCAGAATGCACCTTCATCAGATCCTTTGTTATCTGTGAGATTCTATGAAAGGATGCGTGAGCAACAGGCAGCACTTGGTTTTCTTGTTGAACCATCCACAGAAGAACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB682348             [                                                                                                                                                                                                                       CGGCCGTTACGAGGAGGCCCACGCCGCGCCGCTCCACGAGATCGAGTCCCTTTGCATGCGCTGCGGCGACAACGGCACCACGAGGCTTCTGATGACCATGATTCCGCACTTCCGGGAGGTGGTTCTGATGGCTTTCGAGTGCCCGCATTGCGGTGAGAGGAACAATGAGGTTCAGTTTGCTGGACAGCTCCAGCCGAAGGGATGTTGTTACCGTTTGGAGGTCCCGCGCGGGCAGAACGAGATACTGAACCGTCAGGTTGTGAAATCTGATTCAGCAACTATTAAGATTCCAGAACTGGACTTTGAGATCCCTCCAGAAGCTCAACGTGGATCACTTTCAACAGTGGAAGGGATTATTATGCGAGCTGTGGATGAGCTGCAGGCACTTCAAGATGAAAGAAAGAAAGTGGATCCTCAAAAGGCCGAAGCTATTGATAAATTTTTAGCAAAATTGAGATCTCTTGGATTAGGAGAAGCTGCTTTCACCTTTGTTCTTGATGATCCTGCTGGAAATAGCTTCATTGAAAACCAGAATGCACCTTCATCAGATCCTTTGTTATCTGTGAGATTCTATGAAAGGATGCGTGAGCAACAGGCAGCACTTGGTTTTCTTGTTGAACCATCCACAGAAGAACCTGGGGATCAGCCTGTTAATCATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB647065             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CTTTGCTACAAAAATCCCATATTTTGGTGAGGTTATTGTTATGGCAACAACATGCGACATGTGCGGCTATCGCAACTCAGAGTTGAAGCCTGGTGGTGAAATCCCAGCCAAAGGAAAGAAAATTACACTACGTGTGCAGAACGGAAAAGATCTTACACGTGATGTCATAAAGTCAGATTCAGCTGGCGTAAAAGTACCTGAACTCGAGTTGGAGCTAGCAAGTGGAACATTGGGTGGTATT GTTACAAC  AG TTGAAGGTTTAATTGTGAAAATATG CGAGGCT CTGCAGAGAGT GCATGGAT TCCA TTTGGGTGA TAGCACA CT GGA AT GGAAAAAGAAG AA ATGGGAGGATTTCAACGATAGATTATCCAAGCTTCTAAGTTTACAAGA GCCTTGGACTTTAATTATCGATGATGGATTGGCAGCTTCATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGAC AACCAGCTAACCATTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGACATGGACACATCGTCTGCTGACGCCGCCTACAACACCACCAACCCATAATGTACTCAATGTTGTAACATGTGATATTATCAAATATACTTATTGTGCTCCATGTTGTAGTAAGTTGCGATATTTCTCATTTTAAATCCTCAAGTTTTGTGTTAGCCATAGCTTTTGTTTCTGAGACGATCGAAGATATTCAGTTGCCTAAAaaaggaaa                                                     ]
[-] EMBL CB638619             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ATTACACTACGTGTGCAGAACGGAAAAGATCTTACACGTGATGTCATAAAGTCAGATTCAGCTGGCGTAAAAGTACCTGAACTCGAGTTGGAGCTAGCAAGTGGAACATTGGGTGGTATT GTTACAAC  AG TTGAAGGTTTAATTGTGAAAATATG CGAGGCT CTGCAGAGAGT GCATGGAT TCCA TTTGGGTGA TAGCACA CT GGA AT GGAAAAAGAAG AA ATGGGAGGATTTCAACGATAGATTATCCAAGCTTCTAAGTTTACAAGA GCCTTGGACTTTAATTATCGATGATGGATTGGCAGCTTCATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGAC AACCAGCTAACCATTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGACATGGACACATCGTCTGCTGACGCCGCCTACAACACCACCAACCCATAATGTACTCAATGTTGTAACATGTGATATTATCAAATATACTTATTGTGCTCCATGTTGTAGTAAGTTGCGATATTTCTCATTTTAAATCCTCAAGTTTTGTGTTAGCCATAGCTTTTG TTCTGAGACGATCGAAGATATTCAGTTGACCAA                                                              ]
[-] EMBL CB638623             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GCTGGCGTAAAAGTACCTGAACTCGAGTTGGAGCTAGCAAGTGGAACATTGGGTGGTATT GTTACAAC  AG TTGAAGGTTTAATTGTGAAAATATG CGAGGCT CTGCAGAGAGT GCATGGAT TCCA TTTGGGTGA TAGCACA CT GGA AT GGAAAAAGAAG AA ATGGGAGGATTTCAACGATAGATTATCCAAGCTTCTAAGTTTACAAGA GCCTTGGACTTTAATTATCGATGATGGATTGGCAGCTTCATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGAC AACCAGCTAACCATTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGACATGGACACATCGTCTGCTGACGCCGCCTACAACACCACCAACCCATAATGTACTCAATGTTGTAACATGTGATATTATCAAATATACTTATTGTGCTCCATGTTGTAGTAAGTTGCGATATTTCTCATTTTAAATCCTCAAGTTTTGTGTTAGCCATAGCTTTTGTTTCTGAGACGATCGAAGATATTCAGTTGACCAA                                                              ]
[+] EMBL BI802057             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GTATTGGTTACCACCAAGTTTGAAGTTTTAATTGTGAAAATATGCCGAGCCTCCTGCAGAGAGTCGCATGGATCCCCACTTTGGGTGATTACCACACCTGGGATATGGGAAAAAGAAGTAATATGGGAGGATTTCAACGATAGATTATCCAAGCTTCTAAGTTTACAAGACCCCTTGGACTTTAATTATCGATGATGGATTGCCAGCTTCATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAAACCAGCTAACCCTTGAGGAGTATGTGAGGAGCTGGGACCAGAATGAGGAGCTTGGCTTGAATGACATGGACACATCGTCTGCTGAC CCGCCTAC ACACC CCAACCCATAATGTACTCAATGTTGTAACATGTGATATTATCAAATATACTTATTGTGCTCCATGTTGTAGTAAGTTGCGATATTTCTCATGTGAAA CCTCAAGTTTTGTGTTACCCATAGCTTTTGTTTCTGAGACGATCGAAGATATTCAGTGGACCAAATTTGCTTTATCAGAACGTTTCTGGTTTCTTGGCTTAAaaa                     ]




>consensus_12733#0
CTCCCTTCCCCTCCCGCCGCGAAGCCACCAGCGCCACCAGCTTCCACGCCTCCACTGCCG
CCACGAGAGCCGAACCACGCAGACCTAAGCCAGAGAGATCGCGAGAGGGAGCCTCCGCTC
CTTCGCTTAGCGGCGGCGGAGACCATGGCGAGCTCCGGGGAGGAAGGGCGGGTGGTGGTG
GACCTCCGCTCGGCGGCGGAGTCGGCGGGCGGCGGCGGCGGCGACGAGGAGGCCCACGCC
GCGCCGCTCCACGAGATCGAGTCCCTTTGCATGCGCTGCGGCGACAACGGCACCACGAGG
CTTCTGATGACCATGATTCCGCACTTCCGGGAGGTGGTTCTGATGGCTTTCGAGTGCCCG
CATTGCGGTGAGAGGAACAATGAGGTTCAGTTTGCTGGACAGCTCCAGCCGAAGGGATGT
TGTTACCGTTTGGAGGTCCCGCGCGGGCAGAACGAGATACTGAACCGTCAGGTTGTGAAA
TCTGATTCAGCAACTATTAAGATTCCAGAACTGGACTTTGAGATCCCTCCAGAAGCTCAA
CGTGGATCACTTTCAACAGTGGAAGGGATTATTATGCGAGCTGTGGATGAGCTGCAGGCA
CTTCAAGATGAAAGAAAGAAAGTGGATCCTCAAAAGGCCGAAGCTATTGATAAATTTTTA
GCAAAATTGAGATCTCTTGGATTAGGAGAAGCTGCTTTCACCTTTGTTCTTGATGATCCT
GCTGGAAATAGCTTCATTGAAAACCAGAATGCACCTTCATCAGATCCTTTGTTATCTGTG
AGATTCTATGAAAGGATGCGTGAGCAACAGGCAGCACTTGGTTTTCTTGTTGAACCATCC
ACAGAAGAACCTGGGGATCAGCCTGTTAATCATGCTTCAACTGTGGAAGGGAACTCTGAG
GTGTTGCAGGAGCCCCACGGTTCGGTTGGAGCTGTTGCAGGTCGCCGTGCTATAGCTCAA
GGAAACCCTGATGAAGTTGCTGCAGCGCTGTGCAGATATTCAGCACCAGAAGAGGTTGAT
ACTTTGCCATCAACATGTGGGGCCTGTGGAACTGAGTGTGTCACTCGTTTCTTTGCTACA
AAAATCCCATATTTTCGTGAGGTTATTGTTATGGCAACAACATGCGACATGTGCGGCTAT
CGCAACTCAGAGTTGAAGCCTGGTGGTGAAATCCCAGCCAAAGGAAAGAAAATTACACTA
CGTGTGCAGAACGGAAAAGATCTTACACGTGATGTCATAAAGTCAGATTCAGCTGGCGTA
AAAGTACCTGAACTCGAGTTGGAGCTAGCAAGTGGAACATTGGGTGGTATTGTTACAACA
GTTGAAGGTTTAATTGTGAAAATATGCGAGGCTCTGCAGAGAGTGCATGGATTCCATTTG
GGTGATAGCACACTGGAATGGAAAAAGAAGAAATGGGAGGATTTCAACGATAGATTATCC
AAGCTTCTAAGTTTACAAGAGCCTTGGACTTTAATTATCGATGATGGATTGGCAGCTTCA
TTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCATTGAGGAGTAT
GTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGACATGGACACATCGTCTGCT
GACGCCGCCTACAACACCACCAACCCATAATGTACTCAATGTTGTAACATGTGATATTAT
CAAATATACTTATTGTGCTCCATGTTGTAGTAAGTTGCGATATTTCTCATTTTAAATCCT
CAAGTTTTGTGTTAGCCATAGCTTTTGTTTCTGAGACGATCGAAGATATTCAGTTGACCA
AATTTGCTTTATCAGAACGTTTCTTGTTTCTTTGCTTAATTACATTGAACGCCACCGGCA
TTG

consensusID : consensus_12733#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1028
fasta sequence 
                              [TTTGTTATCTGTGAAATTCTATGAAAGGACGCGTGAGCAACAGGCAGCACTTGGTTTTCTTGTTGAACCATCCACAGAAGAACCTGGGGATCAGCCTGTTAATCATGCTTCAACTGTGGAAGGGAACTCTGAGGTGTTGCAGGAGCCCCACGGTTCGGTTGGAGCTGTTGCAGGTCGCCGTGCTATAGCTCAAGGAAACCCTGATGAAGTTGCTGCAGCGCTGTGCAGATATTCAGCACCAGAAGAGGTTGATACTTTGCCATCAACATGTGGGGCCTGTGGAACTGAGTGTGTCACTCGTTTCTTTGCTACAAGTATCCTTTTCACCTTTTGTTCACTATTTCTTCCATATGGACTCTTAAACTAAGAATAGAGAAATAGTGTATGTTCGTTTTTAAGTAAAACATGTTGATAATATCAGCAATAGTCAAATAGGTCATCTGTAGTGTTTCTATATGCTTGTTTGATTCTGTGATCAATCTTGGCCTCTTAGAAAAATGAGGGGCTAAGAAATATTTGGGACTTTAATTTAGAATGTTCCTCTTAAAAAATGAGGGGCTAAGAAATATTTGGGACTTTAATTTAGAATGTTCTTGCTGGTTACTTGCATGCTTTATGTGTTAGGGAGTATATCATAGTGCAAAGCATAAATAATATGCTGGAAAATTGGCAGTAACGGTCAAATTGCTTGGAAATATGGTTTATAGTGTCCTGAGATACAGCCAATTTAGGCTTACATAATGGTTTTATGATCTAAACATGGGGATTGATGGAATTTTTTTTGTGTGTGACCGTGCTGGATGATGGATTGATGGCCAAAGCATGCATGTCTATTACTCGCTGTTTTGTAGCATATGATTAGTGGAGCTAGGTTCCACAGTAATTGCTGTCACGCAGTGTAGTTGTAACATGTTTTGATTGGATCCTTGAATCGTACAGAACTCTCTAGTGATATTGTACTGCTAATTATTAATATTTGCTAGTGTCTGGTCTTTGACCTTTGGTTAGAAATCCCATATTTTCGTGAG]

[+] EMBL CB623220             [TTTGTTATCTGTGAAATTCTATGAAAGGACGCGTGAGCAACAGGCAGCACTTGGTTTTCTTGTTGAACCATCCACAGAAGAACCTGGGGATCAGCCTGTTAATCATGCTTCAACTGTGGAAGGGAACTCTGAGGTGTTGCAGGAGCCCCACGGTTCGGTTGGAGCTGTTGCAGGTCGCCGTGCTATAGCTCAAGGAAACCCTGATGAAGTTGCTGCAGCGCTGTGCAGATATTCAGCACCAGAAGAGGTTGATACTTTGCCATCAACATGTGGGGCCTGTGGAACTGAGTGTGTCACTCGTTTCTTTGCTACAAGTATCCTTTTCACCTTTTGTTCACTATTTCTTCCATATGGACTCTTAAACTAAGAATAGAGAAATAGTGTATGTTCGTTTTTAAGTAAAACATGTTGATAATATCAGCAATAGTCAAATAGGTCATCTGTAGTGTTTCTATATGCTTGTTTGATTCTGTGATCAATCTTGGCCTCTTAGAAAAATGAGGGGCTAAGAAATATTTGGGACTTTAATTTAGAATGTTCCTCTTAAAAAATGAGGGGCTAAGAAATATTTGGGACTTTAATTTAGAATGTTCTTGCTGGTTACTTGCATGCTTTATGTGTTAGGGAGTATATCATAGTGCAAAGCATAAATAATATGCTGGAAAATTGGCAGTAACGGTCAAATTGCTTGGAAATATGGTTTATAGTGTCCTGAGATACAGCCAATTTAGGCTTACATAATGGTTTTATGATCTAAACATGGGGATTGATGGAATTTTTTTTGTGTGTGACCGTGCTGGATGATGGATTGATGGCCAAAGCATGCATGTCTATTACTCGCTGTTTTG                                                                                                                                                                                    ]
[+] EMBL CK085276             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTGATTCTGTGATCAATCTTGGCCTCTTTGAAAAATGAGGGGCTAAGAAATATTTGGGACTTTAATTTAGAATGTTCCTCTTAAAAAATGAGGGGCTAAGAAATATTTGGGACTTTAATTTAGAATGTTCTTGCTGGTTACTTGCATGCTTTATGTGTTAGGGAGTATATCATAGTGCAAAGCATAAATAATATGCTGGAAAATTGGCAGTAACGGTCAAATTGCTTGGAAATATGGTTTATAGTGTCCTGAGATACAGCCAATTTAGGCTTACGTAATGGTTTTATGATCTAAACATGGGGATTGATGGAATTTTTTTTGTGTGTGACCGTGCTGGATGATGGATTGATGGCCAAAGCATGCATGTCTTTTACTGGCTGGTTTGTAGCATATGATTAGTGGAGCTAGGTTCCACAGTAATTGCTGTCACGCAGTGTAGTTGTAACATGTTTTGATTGGATCCTTGAATCGTACAGAACTCTCTAGTGATATTGTACTGCTAATTATTAATATTTGCTAGTGTCTGGTCTTTGACCTTTGGTTAGAAATCCCATATTTTCGTGAG]




>consensus_12733#1
TTTGTTATCTGTGAAATTCTATGAAAGGACGCGTGAGCAACAGGCAGCACTTGGTTTTCT
TGTTGAACCATCCACAGAAGAACCTGGGGATCAGCCTGTTAATCATGCTTCAACTGTGGA
AGGGAACTCTGAGGTGTTGCAGGAGCCCCACGGTTCGGTTGGAGCTGTTGCAGGTCGCCG
TGCTATAGCTCAAGGAAACCCTGATGAAGTTGCTGCAGCGCTGTGCAGATATTCAGCACC
AGAAGAGGTTGATACTTTGCCATCAACATGTGGGGCCTGTGGAACTGAGTGTGTCACTCG
TTTCTTTGCTACAAGTATCCTTTTCACCTTTTGTTCACTATTTCTTCCATATGGACTCTT
AAACTAAGAATAGAGAAATAGTGTATGTTCGTTTTTAAGTAAAACATGTTGATAATATCA
GCAATAGTCAAATAGGTCATCTGTAGTGTTTCTATATGCTTGTTTGATTCTGTGATCAAT
CTTGGCCTCTTAGAAAAATGAGGGGCTAAGAAATATTTGGGACTTTAATTTAGAATGTTC
CTCTTAAAAAATGAGGGGCTAAGAAATATTTGGGACTTTAATTTAGAATGTTCTTGCTGG
TTACTTGCATGCTTTATGTGTTAGGGAGTATATCATAGTGCAAAGCATAAATAATATGCT
GGAAAATTGGCAGTAACGGTCAAATTGCTTGGAAATATGGTTTATAGTGTCCTGAGATAC
AGCCAATTTAGGCTTACATAATGGTTTTATGATCTAAACATGGGGATTGATGGAATTTTT
TTTGTGTGTGACCGTGCTGGATGATGGATTGATGGCCAAAGCATGCATGTCTATTACTCG
CTGTTTTGTAGCATATGATTAGTGGAGCTAGGTTCCACAGTAATTGCTGTCACGCAGTGT
AGTTGTAACATGTTTTGATTGGATCCTTGAATCGTACAGAACTCTCTAGTGATATTGTAC
TGCTAATTATTAATATTTGCTAGTGTCTGGTCTTTGACCTTTGGTTAGAAATCCCATATT
TTCGTGAG

consensusID : consensus_12733#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 294
fasta sequence 
                              [TGAAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGACATGGACACATCGTCTGCTGACGCCGCCTACAACACCACCAACCCATAATGTACTCAATGTTGTAACATGTGATATTATCAAATATACTTATTGTGCTCCATGTTGTAGTAAGTTGCGATATTTCTCATTTTAAATCCTCAAGTTTTGTGTTAGCCATAGCTTTTGTTTCTGAGACGATCGAAGATATTCAGTTGACCAAATTTGCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF327020             [TGAAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGACATGGACACATCGTCTGCTGACGCCGCCTACAACACCACCAACCCATAATGTACTCAATGTTGTAACATGTGATATTATCAAATATACTTATTGTGCTCCATGTTGTAGTAAGTTGCGATATTTCTCATTTTAAATCCTCAAGTTTTGTGTTAGCCATAGCTTTTGTTTCTGAGACGATCGAAGATATTCAGTTGACCAAATTTGCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_12733#2
TGAAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGACATGGACA
CATCGTCTGCTGACGCCGCCTACAACACCACCAACCCATAATGTACTCAATGTTGTAACA
TGTGATATTATCAAATATACTTATTGTGCTCCATGTTGTAGTAAGTTGCGATATTTCTCA
TTTTAAATCCTCAAGTTTTGTGTTAGCCATAGCTTTTGTTTCTGAGACGATCGAAGATAT
TCAGTTGACCAAATTTGCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12733#0      CTCCCTTCCCCTCCCGCCGCGAAGCCACCAGCGCCACCAGCTTCCACGCCTCCACTGCCG 60
consensus_12733#2      ------------------------------------------------------------
consensus_12733#1      ------------------------------------------------------------
                                                                                   

consensus_12733#0      CCACGAGAGCCGAACCACGCAGACCTAAGCCAGAGAGATCGCGAGAGGGAGCCTCCGCTC 120
consensus_12733#2      ------------------------------------------------------------
consensus_12733#1      ------------------------------------------------------------
                                                                                   

consensus_12733#0      CTTCGCTTAGCGGCGGCGGAGACCATGGCGAGCTCCGGGGAGGAAGGGCGGGTGGTGGTG 180
consensus_12733#2      ------------------------------------------------------------
consensus_12733#1      ------------------------------------------------------------
                                                                                   

consensus_12733#0      GACCTCCGCTCGGCGGCGGAGTCGGCGGGCGGCGGCGGCGGCGACGAGGAGGCCCACGCC 240
consensus_12733#2      ------------------------------------------------------------
consensus_12733#1      ------------------------------------------------------------
                                                                                   

consensus_12733#0      GCGCCGCTCCACGAGATCGAGTCCCTTTGCATGCGCTGCGGCGACAACGGCACCACGAGG 300
consensus_12733#2      ------------------------------------------------------------
consensus_12733#1      ------------------------------------------------------------
                                                                                   

consensus_12733#0      CTTCTGATGACCATGATTCCGCACTTCCGGGAGGTGGTTCTGATGGCTTTCGAGTGCCCG 360
consensus_12733#2      ------------------------------------------------------------
consensus_12733#1      ------------------------------------------------------------
                                                                                   

consensus_12733#0      CATTGCGGTGAGAGGAACAATGAGGTTCAGTTTGCTGGACAGCTCCAGCCGAAGGGATGT 420
consensus_12733#2      ------------------------------------------------------------
consensus_12733#1      ------------------------------------------------------------
                                                                                   

consensus_12733#0      TGTTACCGTTTGGAGGTCCCGCGCGGGCAGAACGAGATACTGAACCGTCAGGTTGTGAAA 480
consensus_12733#2      ------------------------------------------------------------
consensus_12733#1      ------------------------------------------------------------
                                                                                   

consensus_12733#0      TCTGATTCAGCAACTATTAAGATTCCAGAACTGGACTTTGAGATCCCTCCAGAAGCTCAA 540
consensus_12733#2      ------------------------------------------------------------
consensus_12733#1      ------------------------------------------------------------
                                                                                   

consensus_12733#0      CGTGGATCACTTTCAACAGTGGAAGGGATTATTATGCGAGCTGTGGATGAGCTGCAGGCA 600
consensus_12733#2      ------------------------------------------------------------
consensus_12733#1      ------------------------------------------------------------
                                                                                   

consensus_12733#0      CTTCAAGATGAAAGAAAGAAAGTGGATCCTCAAAAGGCCGAAGCTATTGATAAATTTTTA 660
consensus_12733#2      ------------------------------------------------------------
consensus_12733#1      ------------------------------------------------------------
                                                                                   

consensus_12733#0      GCAAAATTGAGATCTCTTGGATTAGGAGAAGCTGCTTTCACCTTTGTTCTTGATGATCCT 720
consensus_12733#2      ------------------------------------------------------------
consensus_12733#1      ------------------------------------------------------------
                                                                                   

consensus_12733#0      GCTGGAAATAGCTTCATTGAAAACCAGAATGCACCTTCATCAGATCCTTTGTTATCTGTG 780
consensus_12733#2      ------------------------------------------------------------
consensus_12733#1      -----------------------------------------------TTTGTTATCTGTG 13
                                                                                   

consensus_12733#0      AGATTCTATGAAAGGATGCGTGAGCAACAGGCAGCACTTGGTTTTCTTGTTGAACCATCC 840
consensus_12733#2      ------------------------------------------------------------
consensus_12733#1      AAATTCTATGAAAGGACGCGTGAGCAACAGGCAGCACTTGGTTTTCTTGTTGAACCATCC 73
                                                                                   

consensus_12733#0      ACAGAAGAACCTGGGGATCAGCCTGTTAATCATGCTTCAACTGTGGAAGGGAACTCTGAG 900
consensus_12733#2      ------------------------------------------------------------
consensus_12733#1      ACAGAAGAACCTGGGGATCAGCCTGTTAATCATGCTTCAACTGTGGAAGGGAACTCTGAG 133
                                                                                   

consensus_12733#0      GTGTTGCAGGAGCCCCACGGTTCGGTTGGAGCTGTTGCAGGTCGCCGTGCTATAGCTCAA 960
consensus_12733#2      ------------------------------------------------------------
consensus_12733#1      GTGTTGCAGGAGCCCCACGGTTCGGTTGGAGCTGTTGCAGGTCGCCGTGCTATAGCTCAA 193
                                                                                   

consensus_12733#0      GGAAACCCTGATGAAGTTGCTGCAGCGCTGTGCAGATATTCAGCACCAGAAGAGGTTGAT 1020
consensus_12733#2      ------------------------------------------------------------
consensus_12733#1      GGAAACCCTGATGAAGTTGCTGCAGCGCTGTGCAGATATTCAGCACCAGAAGAGGTTGAT 253
                                                                                   

consensus_12733#0      ACTTTGCCATCAACATGTGGGGCCTGTGGAACTGAGTGTGTCACTCGTTTCTTTGCTACA 1080
consensus_12733#2      ------------------------------------------------------------
consensus_12733#1      ACTTTGCCATCAACATGTGGGGCCTGTGGAACTGAGTGTGTCACTCGTTTCTTTGCTACA 313
                                                                                   

consensus_12733#0      AAAATCCCATATTTTCGTGAGGTTATTGTTATGGCAACAACATGCGACATGTGCGGCTAT 1140
consensus_12733#2      ------------------------------------------------------------
consensus_12733#1      AGTATCC----TTTTCACCTTTTGTTCACTATTTCTTCCATAT-----------GGACTC 358
                                                                                   

consensus_12733#0      CGCAACTCAGAGTTGAAGCCTGGTGGTGAAATCCCAGCCAAAGGAAAGAAAATTACACTA 1200
consensus_12733#2      ------------------------------------------------------------
consensus_12733#1      TTAAACTAAGAATAGAGA---AATAGTGTATGTTCGTTTTTAAGTAAAACATGTTGATAA 415
                                                                                   

consensus_12733#0      CGTGTGCAGAACGGAAAAGATCTTACACGTGATGTCATAAAGTCAGATTCAGCTGGCGTA 1260
consensus_12733#2      ------------------------------------------------------------
consensus_12733#1      TATCAGCAATA-GTCAAATAGGTCATCTGTAGTGTTTCTATATGCTTGTTTGATTCTGTG 474
                                                                                   

consensus_12733#0      AAAGTACCTGAACTCGAGTTGGAGCTAGCAAGTGGAACATTGGGTGGTATTGTTACAACA 1320
consensus_12733#2      ------------------------------------------------------------
consensus_12733#1      ATCAATCTTGGCCTCTTAGAAAAATGAGGGGCTAAGAAATAT-------TTGGGACTTTA 527
                                                                                   

consensus_12733#0      GTTGAAGGTTTAATTGTGAAAATATGCGAGGCTCTGCAGAGAGTGCATGGATTCCATTTG 1380
consensus_12733#2      ------------------------------------------------------------
consensus_12733#1      ATTTAGAATGTTCCTCTTAAAAAATGAGGGGCTAAG--AAATATTTGGGACTTTAATTTA 585
                                                                                   

consensus_12733#0      GGTGATAGCACACTGGAATGGAAAAAGAAGAAATGGGAGGATTTCAACGATAGATTATCC 1440
consensus_12733#2      ------------------------------------------------------------
consensus_12733#1      GAATGTTCTTGCTGGTTACTTGCATGCTTTATGTGTTAGGGAGTATATCATAGTGCA--- 642
                                                                                   

consensus_12733#0      AAGCTTCTAAGTTTACAAGAGCCTTGGACTTTAATTATCGATGATGGATTGGCAGCTTCA 1500
consensus_12733#2      ------------------------------------------------------------
consensus_12733#1      AAGCATAAATAATATGCTGGAAAATTGGCAGTAACGGTCAA--ATTGCTTGGAAATATGG 700
                                                                                   

consensus_12733#0      TTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAACCAGCTAACCATTGAGGAGTAT 1560
consensus_12733#2      -------------------------------------------------TGAAGGAGTAT 11
consensus_12733#1      TTTATAGTGTCCT---------------GAGATACAGCCAATTTAGGCTTACATAATGGT 745
                                                                        *  *  *   *

consensus_12733#0      GTGAGGAGCTGGGAGCAGAA--TGA-GGAGCTTGGCTTGAATGACATGGACACATCGTCT 1617
consensus_12733#2      GTGAGGAGCTGGGAGCAGAA--TGA-GGAGCTTGGCTTGAATGACATGGACACATCGTCT 68
consensus_12733#1      TTTATGATCTAAACATGGGGATTGATGGAATTTTTTTTGTGTG---TGACCGTGCTGGAT 802
                        * * ** **       *    *** ***  **   ***  **   **  *     *  *

consensus_12733#0      GCTGACGCCGCCTACAACACCACCAACCCATAATGTACTCAATGTTGTAACATGTGATAT 1677
consensus_12733#2      GCTGACGCCGCCTACAACACCACCAACCCATAATGTACTCAATGTTGTAACATGTGATAT 128
consensus_12733#1      GATGG-ATTGATGGCCAAAGCATGCATGTCTATTACTCGCTGTTTTGTAGCATATGATTA 861
                       * **     *    * * * **   *    ** *   * *  * ***** *** ****  

consensus_12733#0      TATCAAATATACTT-ATTGTGCTCCATGTT--GTAGTA-AGTTGCGATATTTCTCATTTT 1733
consensus_12733#2      TATCAAATATACTT-ATTGTGCTCCATGTT--GTAGTA-AGTTGCGATATTTCTCATTTT 184
consensus_12733#1      GTGGAGCTAGGTTCCACAGTAATTGCTGTCACGCAGTGTAGTTGTAACATGTTTTGATT- 920
                           *  **   *  *  **  *   ***   * ***  *****  * ** * *   ** 

consensus_12733#0      AAATCCTCAAGTTTTGTGTTAGCCATAGCTTTTGTTTCTGAGACGATCGAAGATATTCAG 1793
consensus_12733#2      AAATCCTCAAGTTTTGTGTTAGCCATAGCTTTTGTTTCTGAGACGATCGAAGATATTCAG 244
consensus_12733#1      GGATCCTTGAATCGTACAGAACTCTCTAGTGATATTGTACTGCTAATTATTAATATTTGC 980
                         *****  * *  *     *  *     *  * **     *   **     *****   

consensus_12733#0      T--TGACCAAATTTG---CTTTATCAGAACGTTTCTTGTTTCTTTGCTTAATTACATTGA 1848
consensus_12733#2      T--TGACCAAATTTG---CTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----- 294
consensus_12733#1      TAGTGTCTGGTCTTTGACCTTTGGTTAGAAATCCCATATTTTCGTGAG------------ 1028
                       *  ** *     **    ****      *                               

consensus_12733#0      ACGCCACCGGCATTG 1863
consensus_12733#2      ---------------
consensus_12733#1      ---------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)