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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12746#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1120 fasta sequence
[CTCCCCAGGCTGCACAGCCCACCCCCGACCACCCCTCGATCCGCCTCCGCCTCCGCCTCGTCGTCGCCGTCGACGCCCCCACCCACCATGGCGGCGCTCCTCGCCCGGCAGGCAGCGCAGGCGCTCCGCGCGCGCCAGATGGCGCAGCTCGGGCCGTCCGCGACGGCGATGCAGGGGCACATCCGGACCTACATGGGCGCAGGGAAGCCCACGAGGTTCAAAGAGGATGAGGAGAAAGAGAAGCTTGCAAAGGAGATAGCGAAAGATTGGAATGCTGTATTTGAAAGGAGCATCAACACATTGTTTTTGACTGAAATGGTCCGCGGTTTGATGCTGACACTCAAGTACTTCTTCGAGAAGAATGTTACAATCAACTATCCATTTGAGAAGGGTCCTTTGAGCCCTCGCTTCCGAGGAGAGCATGCTCTCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGTAGTCGTAGAACTACAAGATATGATATTGATATGACCAAATGCATCTATTGTGGCTTCTGCCAAGAAGCTTGTCCTGTTGATGCCATCGTTGAGGGTCCTAACTTTGAGTTTGCTACTGAAACCCATGAGGAACTGCTATACGACAAGGAAAAATTGCTTGAGAACGGCGATCGTTGGGAGACTGAGATTGCTGCAAACTTGGAGTCCGAGAGTCTTTACCGTTGATTTTTGTTACTCATGATAAGGATTCAGCATTTCCCTGTTTTACTCAACTAGCTGATAAATAAGCAAACTTTGTATCATAACCTAAATACCTGGTACCATGCTTTTGTACCTTGGTCCATCATTTGTTATTTTGTGCCAGGGTAAAGGTGCATTACCATGTTTTTTTCGATATCATTGTACTGTTGTCGACTCAGATGGCATTTTGAACAAAATATTGTGGTTCAGAATGCACC-TTTTGTTAGTAAATTGCTT-GCATCTAGACAATG-CA-GGACCGATGCTTCTGTATTTAAAAAAAAAAAACTAGAAAAAAAAAGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK119532 [CTCCCCAGGCTGCACAGCCCACCCCCGACCACCCCTCGATCCGCCTCCGCCTCCGCCTCGTCGTCGCCGTCGACGCCCCCACCCACCATGGCGGCGCTCCTCGCCCGGCAGGCAGCGCAGGCGCTCCGCGCGCGCCAGATGGCGCAGCTCGGGCCGTCCGCGACGGCGATGCAGGGGCACATCCGGACCTACATGGGCGCAGGGAAGCCCACGAGGTTCAAAGAGGATGAGGAGAAAGAGAAGCTTGCAAAGGAGATAGCGAAAGATTGGAATGCTGTATTTGAAAGGAGCATCAACACATTGTTTTTGACTGAAATGGTCCGCGGTTTGATGCTGACACTCAAGTACTTCTTCGAGAAGAATGTTACAATCAACTATCCATTTGAGAAGGGTCCTTTGAGCCCTCGCTTCCGAGGAGAGCATGCTCTCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGTAGTCGTAGAACTACAAGATATGATATTGATATGACCAAATGCATCTATTGTGGCTTCTGCCAAGAAGCTTGTCCTGTTGATGCCATCGTTGAGGGTCCTAACTTTGAGTTTGCTACTGAAACCCATGAGGAACTGCTATACGACAAGGAAAAATTGCTTGAGAACGGCGATCGTTGGGAGACTGAGATTGCTGCAAACTTGGAGTCCGAGAGTCTTTACCGTTGATTTTTGTTACTCATGATAAGGATTCAGCATTTCCCTGTTTTACTCAACTAGCTGATAAATAAGCAAACTTTGTATCATAACCTAAATACCTGGTACCATGCTTTTGTACCTTGGTCCATCATTTGTTATTTTGTGCCAGGGTAAAGGTGCATTACCATGTTTTTTTCGATATCATTGTACTGTTGTCGACTCAGATGGCATTTTGAACAAAATATTGTGGTTCAGAATGCACC TTTTGTTAGTAAATTGCTT GCATCTAGACAATG CA GGACCG ]
[+] EMBL CA999708 [ CCCCCGACCACCCCTCGATCCGCCTCCGCCTCCGCCTCGTCGTCGCCGTCGACGCCCCCACCCACCATGGCGGCGCTCCTCGCCCGGCAGGCAGCGCAGGCGCTCCGCGCGCGCCAGATGGCGCAGCTCGGGCCGTCCGCGACGGCGATGCAGGGGCACATCCGGACCTACATGGGCGCAGGGAAGCCCACGAGGTTCAAAGAGGATGAGGAGAAAGAGAAGCTTGCAAAGGAGATAGCGAAAGATTGGAATGCTGTATTTGAAAGGAGCATCAACACATTGTTTTTGACTGAAATGGTCCGCGGTTTGATGCTGACACTCAAGTACTTCTTCGAGAAGAATGTTACAATCAACTATCCATTTGAGAAGGGTCCTTTGAGCCCTCGCTTCCGAGGAGAGCATGCTCTCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGTAGTCGTAGAACTACAAGATATGATATTGATATGACCAAATGCATCTATTGTGGCTTCTGCCAAGAAGCTTGTCCTGTTGATGCCATCGTTGAGGGTCCTAACTTTGAGTTTGCTACTGAAACCCATGAGGAACTGCTATACGACAAGGAAAAATTGCTTGAGAACGGCGATCG ]
[+] EMBL C72516 [ CCCCCGACCACCCCTCGATCCGCCTCCGCCTCCGCCTCGTCGTCGCCGTCGACGCCCCCACCCACCATGGCGGCGCTCCTCGCCCGGCAGGCAGCGCAGGCGCTCCG GCGCGCCAGATGGCG AG TCGGGCCGTCCGCGAC GCGATGCAGGGGCACATCCGGACCTACATGGGCGCAGGGAAGCCCACGAGGTTCAAAGAGGATGAGGAGAAAGAGAAGCTTGCAAAGGAGATAGCGAAAGATTGGAATGCTGTATTTGAAAGGAGCATCAACACATTGTTTTTGACTGAAATGGTCCGCGGTTTGATGCTGACACTCAAGTACTTCTTCGAGAAGAATGTTACAATCAACTATCCATTTGAGAAGGGTCCTTTGAGCCCTCGNTTCCG ]
[+] EMBL AK065851 [ CCGCCTCGTCGTCGCCATCGACGCCCCCACCCACCATGGCGGCGCTCCTCGCCCGGCAGGCAGCGCAGGCGCTCCGCGCGCGCCAGATGGCGCAGCTCGGGCCGTCCGCGACGGCGATGCAGGGGCACATCCGGACCTACATGGGCGCAGGGAAGCCCACGAGGTTCAAAGAGGATGAGGAGAAAGAGAAGCTTGCAAAGGAGATAGCGAAAGATTGGAATGCTGTATTTGAAAGGAGCATCAACACATTGTTTTTGACTGAAATGGTCCGCGGTTTGATGCTGACACTCAAGTACTTCTTCGAGAAGAATGTTACAATCAACTATCCATTTGAGAAGGGTCCTTTGAGCCCTCGCTTCCGAGGAGAGCATGCTCTCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGTAGTCGTAGAACTACAAGATATGATATTGATATGACCAAATGCATCTATTGTGGCTTCTGCCAAGAAGCTTGTCCTGTTGATGCCATCGTTGAGGGTCCTAACTTTGAGTTTGCTACTGAAACCCATGAGGAACTGCTATACGACAAGGAAAAATTGCTTGAGAACGGCGATCGTTGGGAGACTGAGATTGCTGCAAACTTGGAGTCCGAGAGTCTTTACCGTTGATTTTTGTTACTCATGATAAGGATTCAGCATTTCCCTGTTTTACTCAACTAGCTGATAAATAAGCAAACTTTGTATCATAACCTAAATACCTGGTACCATGCTTTTGTACCTTGGTCCATCATTTGTTATTTTGTGCCAGGGTAAAGGTGCATTACCATGTTTTTTTCGATATCATTGTACTGTTGTCGACTCAGATGGCATTTTGAACAAAATATTGTGGTTCAGAATGCACC TTTTGTTAGTAAATTGCTT GCATCTAGACAATG CA GGACCG ]
[+] EMBL OS1438A [ CGTCGCCGTCGACGCCCCCACCCACCATGGCGGCGCTCCTCGCCCGGCAGGCAGCGCAGGCGCTCCG G GCGCCAGATGGCG AG TCGGGCCGTCCGCGAC GNGATGCAGGGGCACATCCGGACCTACATGGGCGCAGGGAAGCCCACGAGGTTCAAAGAGGATGAGGAGAAAGAGAAGCTTGCAAAGGAGATAGCGAAAGATTGGAATGCTGTATTTGAAAGGAGCATCAACACATTGTTTTTGACTGAAATGGTCCGCGGTTTGATGCTGACACTCAAGTACTTCTTCGAGAAGAATGTTACAATCAACTATCCATTTGAGAAGGGTCCTT ]
[-] EMBL CF326268 [ TCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGTAGTCGTAGAACTACAAGATATGATATTGATATGACCAAATGCATCTATTGTGGCTTCTGCCAAGAAGCTTGTCCTGTTGATGCCATCGTTGAGGGTCCTAACTTTGAGTTTGCTACTGAAACCCATGAGGAACTGCTATACGACAAGGAAAAATTGCTTGAGAACGGCGATCGTTGGGAGACTGAGATTGCTGCAAACTTGGAGTCCGAGAGTCTTTACCGTTGATTTTTGTTACTCATGATAAGGATTCAGCATTTCCCTGTTTTACTCAACTAGCTGATAAATAAGCAAACTTTGTATCATAACCTAAATACCTGGTACCATGCTTTTGTACCTTGGTCCATCATTTGTTATTTTGTGCCAGGGTAAAGGTGCATTACCATGTTTTTTTCGATATCATTGTACTGTTGTCGACTCAGATGGCATTTTGAACAAAATATTGTGGTTCAGAATGCACC TTTTGTTAGTAAATTGCTT GCATCTAGACAATG CA GGACCGATGCTTCTGTATTTAAAA ]
[+] EMBL CB679716 [ TATTGATATGACCAAATGCATCTATTGTGGCTTCTGCCAAGAAGCTTGTCCTGTTGATGCCATCGTTGAGGGTCCTAACTTTGAGTTTGCTACTGAAACCCATGAGGAACTGCTATACGACAAGGAAAAATTGCTTGAGAACGGCGATCGTTGGGAGACTGAGATTGCTGCAAACTTGGAGTCCGAGAGTCTTTACCGTTGATTTTTGTTACTCATGATAAGGATTCAGCATTTCCCTGTTTTACTCAACTAGCTGATAAATAAGCAAACTTTGTATCATAACCTAAATACCTGGTACCATGCTTTTGTACCTTGGTCCATCATTTGTTATTTTGTGCCAGGGTAAAGGTGCATTACCATGTTTTTTTCGATATCATTGTACTGTTGTCGACTCAGATGGCATTTTGAACAAAATATTGTGGTTCAGAATGCACC TTTTGTTAGTAAATTGCTT GCATCTAGACAATG CA GGACC TC A AAAAAAAAAAAACTAGAAAAAAAAAGAAAT ]
[+] EMBL CA767418 [ TATGACCAAATGCATCTATTGTGGCTTCTGCCAAGAAGCTTGTCCTGTTGATGCCATCGTTGAGGGTCCTAACTTTGAGTTTGCTACTGAAACCCATGAGGAACTGCTATACGACAAGGAAAAATTGCTTGAGAACGGCGATCGTTGGGAGACTGAGATTGCTGCAAACTTGGAGTCCGAGAGTCTTTACCGTTGATTTTTGTTACTCATGATAAGGATTCAGCATTTCCCTGTTTTACTCAACTAGCTGATAAATAAGCAAACTTTGTATCATAACCTAAATACCTGGTACCATGCTTTTGTACCTTGGTCCATCATTTGTTATTTTGTGCCAGGGTAAAGGTGCATTACCATGTTTTTTTCGATATCATTGTACTGTTGTCGACTCAGATGGCATCTTGAACAAAATATTGTGGTTCAGAATGCACC T ]
[+] EMBL AU056989 [ AAAATTGCTTGAGAACGGCGATCGTTGGGAGACTGAGATTGCTGCAAACTTGGAGTCCGAGAGTCTTTACCGTTGATTTTTGTTACTCATGATAAGGATTCAGCATTTCCCTGTTTTACTCAACTAGCTGATAAATAAGCAAACTTTGTATCATAACCTAAATACCTGGTACCATGCTTTTGTACCTTGGTCCATCATTTGTTATTTTGTGCCAGGGTAAAGGTGCATTACCATGTTTTTTTCGATATCATTGTACTGTTGTCGACTCAGATGGCA TTTGAACNAAATATTGTGGTTCAGAATGCACCTTTTTGTTAGTAAATTGCTTGGCATCTAGACAATGCCAGGGACCGATGCTTCTGT ]
[+] EMBL CF312227 [ CATTTCCCTGTTTTACTCAACTAGCTGATAAATAAGCAAACTTTGTATCATAACCTAAATACCTGGTACCATGCTTTTGTACCTTGGTCCATCATTTGTTATTTTGTGCCAGGGTAAAGGTGCATTACCATGTTTTTTTCGATATCATTGTACTGTTGTCGACTCAGATGGCATTTTGAACAAAATATTGTGGTTCAGAATGCACC TTTTGTTAGTAAATTGCTT GCATCTAGACAATG CA GGACCGATGCTTCTGTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_12746#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence
[AATTGGGGCCCCANNCCAAGATATGATATTGATATGCCCAAATGCATCTATTGTGGCTTCTGCCAANAAGCTTGTCCTGTTGATGCCATCGTTGAGGGTCCTAACTTTGAGTTTGCTACTGAAAACCCATGAGGAACTGCTATACGACAAGGAAAAATTGCTTGAGAACGGCGATCGTTGGGAGACTGAGATTGCTGCAAACTTGGAGTCCGAGAGTCTTTACCGTTGATTTTTGTTACTCATGATAAGGATTCAGCATTTCCCTGTTTTACTCAACTAGCTGATAAATAAGCAAACTTTGTATCATAACCTAAATACCTGGTACCATGCTTTTGTACCTTGGTCCATCATTTGTTATTTTGTGCCAGGGTAAAGGTGCATTACCATGTTTTTTTCGATATCATTGTNCTGTTGTCGACTCANATGGCATTTTGAACAAAATATTGTGGTTCAGAAAAAAAAAAAAA]
[+] EMBL AT003426 [AATTGGGGCCCCANNCCAAGATATGATATTGATATGCCCAAATGCATCTATTGTGGCTTCTGCCAANAAGCTTGTCCTGTTGATGCCATCGTTGAGGGTCCTAACTTTGAGTTTGCTACTGAAAACCCATGAGGAACTGCTATACGACAAGGAAAAATTGCTTGAGAACGGCGATCGTTGGGAGACTGAGATTGCTGCAAACTTGGAGTCCGAGAGTCTTTACCGTTGATTTTTGTTACTCATGATAAGGATTCAGCATTTCCCTGTTTTACTCAACTAGCTGATAAATAAGCAAACTTTGTATCATAACCTAAATACCTGGTACCATGCTTTTGTACCTTGGTCCATCATTTGTTATTTTGTGCCAGGGTAAAGGTGCATTACCATGTTTTTTTCGATATCATTGTNCTGTTGTCGACTCANATGGCATTTTGAACAAAATATTGTGGTTCAGAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12746#0 CTCCCCAGGCTGCACAGCCCACCCCCGACCACCCCTCGATCCGCCTCCGCCTCCGCCTCG 60
consensus_12746#1 ------------------------------------------------------------
consensus_12746#0 TCGTCGCCGTCGACGCCCCCACCCACCATGGCGGCGCTCCTCGCCCGGCAGGCAGCGCAG 120
consensus_12746#1 ------------------------------------------------------------
consensus_12746#0 GCGCTCCGCGCGCGCCAGATGGCGCAGCTCGGGCCGTCCGCGACGGCGATGCAGGGGCAC 180
consensus_12746#1 ------------------------------------------------------------
consensus_12746#0 ATCCGGACCTACATGGGCGCAGGGAAGCCCACGAGGTTCAAAGAGGATGAGGAGAAAGAG 240
consensus_12746#1 ------------------------------------------------------------
consensus_12746#0 AAGCTTGCAAAGGAGATAGCGAAAGATTGGAATGCTGTATTTGAAAGGAGCATCAACACA 300
consensus_12746#1 ------------------------------------------------------------
consensus_12746#0 TTGTTTTTGACTGAAATGGTCCGCGGTTTGATGCTGACACTCAAGTACTTCTTCGAGAAG 360
consensus_12746#1 ------------------------------------------------------------
consensus_12746#0 AATGTTACAATCAACTATCCATTTGAGAAGGGTCCTTTGAGCCCTCGCTTCCGAGGAGAG 420
consensus_12746#1 ------------------------------------------------------------
consensus_12746#0 CATGCTCTCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAA 480
consensus_12746#1 ------------------------------------------------------------
consensus_12746#0 GCTATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGTAGTCGT 540
consensus_12746#1 ---------------------------------------------------AATTGGGGC 9
* * *
consensus_12746#0 AGAACTACAAGATATGATATTGATATGACCAAATGCATCTATTGTGGCTTCTGCCAAGAA 600
consensus_12746#1 CCCANNCCAAGATATGATATTGATATGCCCAAATGCATCTATTGTGGCTTCTGCCAANAA 69
* ******************** ***************************** **
consensus_12746#0 GCTTGTCCTGTTGATGCCATCGTTGAGGGTCCTAACTTTGAGTTTGCTACTGAAA-CCCA 659
consensus_12746#1 GCTTGTCCTGTTGATGCCATCGTTGAGGGTCCTAACTTTGAGTTTGCTACTGAAAACCCA 129
******************************************************* ****
consensus_12746#0 TGAGGAACTGCTATACGACAAGGAAAAATTGCTTGAGAACGGCGATCGTTGGGAGACTGA 719
consensus_12746#1 TGAGGAACTGCTATACGACAAGGAAAAATTGCTTGAGAACGGCGATCGTTGGGAGACTGA 189
************************************************************
consensus_12746#0 GATTGCTGCAAACTTGGAGTCCGAGAGTCTTTACCGTTGATTTTTGTTACTCATGATAAG 779
consensus_12746#1 GATTGCTGCAAACTTGGAGTCCGAGAGTCTTTACCGTTGATTTTTGTTACTCATGATAAG 249
************************************************************
consensus_12746#0 GATTCAGCATTTCCCTGTTTTACTCAACTAGCTGATAAATAAGCAAACTTTGTATCATAA 839
consensus_12746#1 GATTCAGCATTTCCCTGTTTTACTCAACTAGCTGATAAATAAGCAAACTTTGTATCATAA 309
************************************************************
consensus_12746#0 CCTAAATACCTGGTACCATGCTTTTGTACCTTGGTCCATCATTTGTTATTTTGTGCCAGG 899
consensus_12746#1 CCTAAATACCTGGTACCATGCTTTTGTACCTTGGTCCATCATTTGTTATTTTGTGCCAGG 369
************************************************************
consensus_12746#0 GTAAAGGTGCATTACCATGTTTTTTTCGATATCATTGTACTGTTGTCGACTCAGATGGCA 959
consensus_12746#1 GTAAAGGTGCATTACCATGTTTTTTTCGATATCATTGTNCTGTTGTCGACTCANATGGCA 429
************************************** ************** ******
consensus_12746#0 TTTTGAACAAAATATTGTGGTTCAGAATGCACCTTTTGTTAGTAAATTGCTTGCATCTAG 1019
consensus_12746#1 TTTTGAACAAAATATTGTGGTTCAGAAAAAAAAAAAAA---------------------- 467
*************************** *
consensus_12746#0 ACAATGCAGGACCGATGCTTCTGTATTTAAAAAAAAAAAACTAGAAAAAAAAAGAAATAA 1079
consensus_12746#1 ------------------------------------------------------------
consensus_12746#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1120
consensus_12746#1 -----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||