Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12748 cluster # 12748       Sequences # 11       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12748#0 length = 1892 sequences # 10  
consensus_12748#1 length = 776 sequences # 1  

consensusID : consensus_12748#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1892
fasta sequence
                              [ATCCGCTCCTGTAGGTACTCGTACTACTCCAATTCTTTCTCTNGCCTACGCCTTCCTCCCAATCTTGTTGTTTCGGCGGCGGCGGCGGCGGCGGCGGTGAGGGAGATGGCGGCGGAGAGGAAGGACGTGGGCATTCTCGCCATGGACATCTACTTCCCGCCCACCTGCGTGCTCCAGGACGAGCTGGAGAATCATGATGGCGTGAGCAAAGGGAAGTACACCATTGGGCTTGGACAGGATAGCATGGCCTTTTGCACTGAAGTGGAAGATGTTATTTCCATGAGCTTGACAGTAGTGAAGTCACTCCTGGAAAACTATAAGATTGATCCAAAATGTATTGGACGTTTGGAAGTTGGCAGTGAAACAGTAATAGACAAGAGCAAGTCTATAAAAACATGGCTGATGCAAATATTTGAGGAATGCGGTAATACTGACATTGAAGGAGTTGACTCCTCAAATGCATGCTACGGTGGAACAGCTGCTTTATTTAATTGTGTTAATTGGGTCGAGAGCAACTCATGGGATGGACGTTATGGGCTTGTTGTTTGCACAGACAGCGCGGTTTACGCTGAAGGTCCGGCTCGTCCAACCGGTGGTGCAGCTGCTATTGCAATGTTGATTGGACCAAATGCTCCAGTTTCTTTCGAAAGCAAGTATAGAGGATCTCATATGGCACATGTCTATGACTTTTACAAGCCTGATCTTGCTAGTGAATACCCGGTGGTCGATGGAAAGCTATCACAGACATGCTATCTCATGGCATTAGATTCCTGCTACAATGTCTTCTGCAAAAAGTATGAAAAGCTTGAGGGAAAGCAATTTTCTATTCATGATGCAGACTATTTTGTATTTCACTCCCCATACAACAAGCTTGTGCAGAAGAGCTTTGCACGCCTATACTACAACGATTTTCTGAGAAAATGCAGCACGGTGGAAGAT-GGATCAAGAG-AAAAACT-GGAGCC-TTA-TTCAGGTTTGTCATCCGAGGAAAGCTACCAGAGTAGAGAACTTGAAAAGGTTTCTCAGCAAGTTGCGAAGCACCTCTATGATTCAAAGGTTCAACCAACTACATTAATCCCGAAACAAGTCGGGAATATGTACACAGCGTCTCTATATGCTGCTTTGGCATCAGTGATGCATAACAAAAATGAAACTCTGGCAGGCCAAAGGATTGTCATGTTCTCATACGGCAGTGGCTTGACATCAACAATGTTCTCTTTCAAGATCAATGAAGGCCAGCATCCATTCATCCTATCAAACATTGCAGGCATACTGGATGTCTCCAAGAAACTGGAGTCCAGGCATGTGGTTGCGCCGGAGAAGTTCGTGGCGGCGCTGAAGCTGATGGAGCACCGGTACGGCGCCAAGGATTTCACGACGAGCCAGGACACGAGCCTGCTCGCTCCAGGCACCTACTACCTCACCCACGTCGACTCCATGTACAGGAGGTTCTACGCCGTCAAAGGTCAAGC--CGTCACCGAAGT-GT-CCAATGGCCATTGAAAAAATTGTG-TTGTGATGT-GTGGTTCATTCAACCTGAA-GCTGCAATAAGCCAACGGCATAGAGGGTTCAGGGCGTGGGTGTACCA-AGT-TTTCTGATGAAAGCTTGTAAAGGGTGCTAGGTTAGAGCTGTTGGATTAGTTGGTTCGCTATTCGCTAGTAAGGCTTACTTGGTGAAATGGTATC-TCCACTTCGTTAATGTTCTTCAGTGGAACACACGGTAGCGAGCTGTAAGAATTCTTAATAATCTGCCGTCCCGTTCTTTTCTCTCCCACAAGAGTAGGATGAAGATTAAGATTTTCGTGGCACGCTTTTCAAACTGCTAAACAGTGCGTTTTATGCGAAAACTTTTTATATGAAAGTTGTTCTAAAATATCATATTAAAAAAAAAAAAAAAAA]

[+] EMBL OSS2724A             [ATCCGCTCCTGTAGGTACTCGTACTACTCCAATTCTTTCTCTNGCCTACGCCTTCCTCCCAATCTTGTTGTTTCGGCGGCGGCGGCGGCGGCGGCGGTGAGGGAGATGGCGGCGGAGAGGAAGGACGTGGGCATTCTCGCCATGGACATCTACTTCCCGCCCACCTGCGTGCTCCAGGACGAGCTGGAGAATCATGATGGCGTNA NAAAGGGAAGTACACCATTGGGCTTGGACAGGATAGCATGGCCTTTTGCACTGAAGTGGAAGATGTTATTTCCATGAGCTTGACAGTAGTGAAGTCACTCCTGGAAAACTATAAGATTGATCCAAAATGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK071039             [                ACTCGTACTACTCCAATTCTTTCTCTCGCCTACGCCTTCCTCCCAATCTTGTTGTTTCGGCGGCGGCGGCGGCGGCGGCGGTGAGGGAGATGGCGGCGGAGAGGAAGGACGTGGGCATTCTCGCCATGGACATCTACTTCCCGCCCACCTGCGTGCTCCAGGACGAGCTGGAGAATCATGATGGCGTGAGCAAAGGGAAGTACACCATTGGGCTTGGACAGGATAGCATGGCCTTTTGCACTGAAGTGGAAGATGTTATTTCCATGAGCTTGACAGTAGTGAAGTCACTCCTGGAAAACTATAAGATTGATCCAAAATGTATTGGACGTTTGGAAGTTGGCAGTGAAACAGTAATAGACAAGAGCAAGTCTATAAAAACATGGCTGATGCAAATATTTGAGGAATGCGGTAATACTGACATTGAAGGAGTTGACTCCTCAAATGCATGCTACGGTGGAACAGCTGCTTTATTTAATTGTGTTAATTGGGTCGAGAGCAACTCATGGGATGGACGTTATGGGCTTGTTGTTTGCACAGACAGCGCGGTTTACGCTGAAGGTCCGGCTCGTCCAACCGGTGGTGCAGCTGCTATTGCAATGTTGATTGGACCAAATGCTCCAGTTTCTTTCGAAAGCAAGTATAGAGGATCTCATATGGCACATGTCTATGACTTTTACAAGCCTGATCTTGCTAGTGAATACCCGGTGGTCGATGGAAAGCTATCACAGACATGCTATCTCATGGCATTAGATTCCTGCTACAATGTCTTCTGCAAAAAGTATGAAAAGCTTGAGGGAAAGCAATTTTCTATTCATGATGCAGACTATTTTGTATTTCACTCCCCATACAACAAGCTTGTGCAGAAGAGCTTTGCACGCCTATACTACAACGATTTTCTGAGAAAATGCAGCACGGTGGAAGAT GGATCAAGAG AAAAACT GGAGCC TTA TTCAGGTTTGTCATCCGAGGAAAGCTACCAGAGTAGAGAACTTGAAAAGGTTTCTCAGCAAGTTGCGAAGCACCTCTATGATTCAAAGGTTCAACCAACTACATTAATCCCGAAACAAGTCGGGAATATGTACACAGCGTCTCTATATGCTGCTTTGGCATCAGTGATGCATAACAAAAATGAAACTCTGGCAGGCCAAAGGATTGTCATGTTCTCATACGGCAGTGGCTTGACATCAACAATGTTCTCTTTCAAGATCAATGAAGGCCAGCATCCATTCATCCTATCAAACATTGCAGGCATACTGGATGTCTCCAAGAAACTGGAGTCCAGGCATGTGGTTGCGCCGGAGAAGTTCGTGGCGGCGCTGAAGCTGATGGAGCACCGGTACGGCGCCAAGGATTTCACGACGAGCCAGGACACGAGCCTGCTCGCTCCAGGCACCTACTACCTCACCCACGTCGACTCCATGTACAGGAGGTTCTACGCCGTCAAAGGTCAAGC  CGTCACCGAAGT GT CCAATGGCCATTGAAAAAATTGTG TTGTGATGT GTGGTTCATTCAACCTGAA GCTGCAATAAGCCAACGGCATAGAGGGTTCAGGGCGTGGGTGTACCA AGT TTTCTGATGAAAGCTTGTAAAGGGTGCTAGGTTAGAGCTGTTGGATTAGTTGGTTCGCTATTCGCTAGTAAGGCTTACTTGGTGAAATGGTATC TCCACTTCGTTAATGTTCTTCAGTGGAACACACGGTAGCGAGCTGT                                                                                                                                                                       ]
[+] EMBL CA998173             [                                                                                                                                                GACATCTACTTCCCGCCCACCTGCGTGCTCCAGGACGAGCTGGAGAATCATGATGGCGTGAGCAAAGGGAAGTACACCATTGGGCTTGGACAGGATAGCATGGCCTTTTGCACTGAAGTGGAAGATGTTATTTCCATGAGCTTGACAGTAGTGAAGTCACTCCTGGAAAACTATAAGATTGATCCAAAATGTATTGGACGTTTGGAAGTTGGCAGTGAAACAGTAATAGACAAGAGCAAGTCTATAAAAACATGGCTGATGCAAATATTTGAGGAATGCGGTAATACTGACATTGAAGGAGTTGACTCCTCAAATGCATGCTACGGTGGAACAGCTGCTTTATTTAATTGTGTTAATTGGGTCGAGAGCAACTCATGGGATGGACGTTATGGGCTTGTTGTTTGCACAGACAGCGCGGTTTACGCTGAAGGTCCGGCTCGTCCAACCGGTGGTGCAGCTGCTATTGCAATGTTGATTGGACCAAATGCTCCAGTTTCTTTCGAAAGCAAGTATAGAGGATCTCATATGGCACATGTCTATGACTTTTACAAGCCTGATCTTGCTAGTGAATACCCGGTGGTCGATGGAAAGCTATCACAGACATGCTATCTCATGGCATTAGATTCCTGCTACAATGTCTTtc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CA998175             [                                                                                                                                                GACATCTACTTCCCGCCCACCTGCGTGCTCCAGGACGAGCTGGAGAATCATGATGGCGTGAGCAAAGGGAAGTACACCATTGGGCTTGGACAGGATAGCATGGCCTTTTGCACTGAAGTGGAAGATGTTATTTCCATGAGCTTGACAGTAGTGAAGTCACTCCTGGAAAACTATAAGATTGATCCAAAATGTATTGGACGTTTGGAAGTTGGCAGTGAAACAGTAATAGACAAGAGCAAGTCTATAAAAACATGGCTGATGCAAATATTTGAGGAATGCGGTAATACTGACATTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CA766507             [                                                                                                                                                                                                                                                                                          AGCTTGACAGTAGTGAAGTCACTCCTGGAAAACTATAAGATTGATCCAAAATGTATTGGACGTTTGGAAGTTGGCAGTGAAACAGTAATAGACAAGAGCAAGTCTATAAAAACATGGCTGATGCAAATATTTGAGGAATGCGGTAATACTGACATTGAAGGAGTTGACTCCTCAAATGCATGCTACGGTGGAACAGCTGCTTTATTTAATTGTGTTAATTGGGTCGAGAGCAACTCATGGGATGGACGNTATGGGCTTGTTGTTTGCACAGACAGCGCGGTTTACGCTGAAGGTCCGGCTCGTCCAACCGGTGGTGCAGCTGCTATTGCAATGTTGATTGGACCAAATGCTCCAGTTTCTTTCGAAAGCAAGTATAGAGGATCTCATATGGCACATGTCTATGACTTTTACAAGCCTGATCTTGCTAGTGAATACCCGGTGGTCGATGGAAAGCTATCACAGACATGCTATCTCATGGCATTAGATTCCTGCTACAATGTCTTCTGCAAAAAGTATGAAAAGCTTGAGGGAAAGCAATTTTCTATTCATGATGCAGACTATTTTGTATTTCACTCCCCGTACAACAAGCTTGTGCAGAAGAGCTTTGCACGCCTATACTACAACGATTTTCTGAGAAAATGCAGCACGGTGGAAGATGGGATCAAGAGAAAAAACTGGGAGCCTTTATTTCAGGg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CA754313             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGAGGGAAAGCAATTTTCTATTCATGATGCAGACTATTTTGTATTTCACTCCCCATACAACAAGCTTGTGCAGAAGAGCTTTGCACGCCTATACTACAACGATTTTCTGAGAAAATGCAGCACGGTGGAAGAT GGATCAAGAG AAAAACT GGAGCC TTA TTCAGGTTTGTCATCCGAGGAAAGCTACCAGAGTAGAGAACTTGAAAAGGCTTCTCAGCAAGTTGCGAAGCACCTCTATGATTCAAAGGTTCAACCAACTACATTAATCCCGAAACAAGTCGGGAATATGTACACAGCGTCTCTATATGCTGCTTTGGCATCAGTGATGCATAACAAAAATGAAACTCTGGCAGGCCAAAGGATTGTCATGTTCTCATACGGCAGTGGCTTGACATCAACAATGTTCTCTTTCAAGATCAATGAAGGCCAGCATCCATTCATCCTATCAAACATTGCAGGCATACTGGATGTCTCCAAGAAACTGGAGTCCAGGCATGTGGTTGCGCCGGAAAAG TCGTGGCGGCGCTGAAGCTGATGGAGCACCGGTACGGCGCCAAGGATTTCACGACGAGCCAGGACACGAGCCTGCTCGCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU058104             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ATGTGGTTGCGCCGGAGAAGTTCGTGGCGGCGCTGAAGCTGATGGAGCACCGGTACGGCGCCAAGGATTTCACGACGAGCCAGGACACGAGCCTGCTCGCTCCAGGCACCTACTACCTCACCCACGTCGACTCCATGTACAGGAGGTTCTACGCCGTCAAAGGTCAAGC  CGTCACCGAAGT GT CCAATGGCCATTGAAAAAATTGTG TTGTGATGT GTGGTTCATTCAACCTGAA GCTGCAATAAGCCAACGGCATAGAGGGTTCAGGGCGTGGGTGTACCA AGT TTTCTGATGAAAGCTTGTAAAGGGTGCTAGGTTAGAGCTGTTGGATTAGTTGGTTCGCTATTCGCTAGTAAGGCTTACTTGGTGAAATGGTATCATNCA TTCGTTAATGTTCTTCAGTGGAACACACGGTAGCGAGCTGTAAGAATTCTTAATAAaaa                                                                                                                                                     ]
[+] EMBL BI796408             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGTCAAGCCACGTCACCGAAGTGGTGCCCAT GCCCTTGAAAAAATTGTGTTTGTGATGTGGTGGTTCATTCAACCTGAAGGCTGCCATAAGCCCACGGCATAGAGGGTTCAGGGCGTGGGTGTACCACAGTGTTTCTGATGAAAGCTTGTAAAGGGTGCTAGGTTAGAGCTGTTGGATTAGTTGGTTCGCTATTCGCTAGTAAGGCTTACTTGGGGAAATGGTATC TCC                                                                                                                                                                                                                  ]
[+] EMBL CF329263             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CTTGTAAAGGGTGCTAGGTTAGAGCTGTTGGATTAGTTGGTTCGCTATTCGCTAGTAAGGCTTACTTGGTGAAATGGTATC TCCACTTCGTTAATGTTCTTCAGTGGAACACACGGTAGCGAGCTGTAAGAATTCTTAATAATCTGCCGTCCCGTTCTTTTCTCTCCCACAAGAGTAGGATGAAGATTAAGATTTTCGTGGCACGCTTTTCAAACTGCTAAACAGTGCGTTTTATGCGAAAACTTTTTATATGAAAGTTGTTCTAAAATATCATATTAAAAAAAAAAAAAAAA ]
[-] EMBL CF329264             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TTGTAAAGGGTGCTAGGTTAGAGCTGTTGGATTAGTTGGTTCGCTATTCGCTAGTAAGGCTTACTTGGTGAAATGGTATC TCCACTTCGTTAATGTTCTTCAGTGGAACACACGGTAGCGAGCTGTAAGAATTCTTAATAATCTGCCGTCCCGTTCTTTTCTTTCCCCCAAGAGTAGGATGAAGATTAAGATTTTCGTGGCACGCTTTTCAAACTGCTAAACAGTGCGTTTTATGCGAAAACTTTTTATATGAAAGTTGTTTTAAAATATCATATTAAAAAAAAAAAAAAAAA]


>consensus_12748#0 ATCCGCTCCTGTAGGTACTCGTACTACTCCAATTCTTTCTCTNGCCTACGCCTTCCTCCC AATCTTGTTGTTTCGGCGGCGGCGGCGGCGGCGGCGGTGAGGGAGATGGCGGCGGAGAGG AAGGACGTGGGCATTCTCGCCATGGACATCTACTTCCCGCCCACCTGCGTGCTCCAGGAC GAGCTGGAGAATCATGATGGCGTGAGCAAAGGGAAGTACACCATTGGGCTTGGACAGGAT AGCATGGCCTTTTGCACTGAAGTGGAAGATGTTATTTCCATGAGCTTGACAGTAGTGAAG TCACTCCTGGAAAACTATAAGATTGATCCAAAATGTATTGGACGTTTGGAAGTTGGCAGT GAAACAGTAATAGACAAGAGCAAGTCTATAAAAACATGGCTGATGCAAATATTTGAGGAA TGCGGTAATACTGACATTGAAGGAGTTGACTCCTCAAATGCATGCTACGGTGGAACAGCT GCTTTATTTAATTGTGTTAATTGGGTCGAGAGCAACTCATGGGATGGACGTTATGGGCTT GTTGTTTGCACAGACAGCGCGGTTTACGCTGAAGGTCCGGCTCGTCCAACCGGTGGTGCA GCTGCTATTGCAATGTTGATTGGACCAAATGCTCCAGTTTCTTTCGAAAGCAAGTATAGA GGATCTCATATGGCACATGTCTATGACTTTTACAAGCCTGATCTTGCTAGTGAATACCCG GTGGTCGATGGAAAGCTATCACAGACATGCTATCTCATGGCATTAGATTCCTGCTACAAT GTCTTCTGCAAAAAGTATGAAAAGCTTGAGGGAAAGCAATTTTCTATTCATGATGCAGAC TATTTTGTATTTCACTCCCCATACAACAAGCTTGTGCAGAAGAGCTTTGCACGCCTATAC TACAACGATTTTCTGAGAAAATGCAGCACGGTGGAAGATGGATCAAGAGAAAAACTGGAG CCTTATTCAGGTTTGTCATCCGAGGAAAGCTACCAGAGTAGAGAACTTGAAAAGGTTTCT CAGCAAGTTGCGAAGCACCTCTATGATTCAAAGGTTCAACCAACTACATTAATCCCGAAA CAAGTCGGGAATATGTACACAGCGTCTCTATATGCTGCTTTGGCATCAGTGATGCATAAC AAAAATGAAACTCTGGCAGGCCAAAGGATTGTCATGTTCTCATACGGCAGTGGCTTGACA TCAACAATGTTCTCTTTCAAGATCAATGAAGGCCAGCATCCATTCATCCTATCAAACATT GCAGGCATACTGGATGTCTCCAAGAAACTGGAGTCCAGGCATGTGGTTGCGCCGGAGAAG TTCGTGGCGGCGCTGAAGCTGATGGAGCACCGGTACGGCGCCAAGGATTTCACGACGAGC CAGGACACGAGCCTGCTCGCTCCAGGCACCTACTACCTCACCCACGTCGACTCCATGTAC AGGAGGTTCTACGCCGTCAAAGGTCAAGCCGTCACCGAAGTGTCCAATGGCCATTGAAAA AATTGTGTTGTGATGTGTGGTTCATTCAACCTGAAGCTGCAATAAGCCAACGGCATAGAG GGTTCAGGGCGTGGGTGTACCAAGTTTTCTGATGAAAGCTTGTAAAGGGTGCTAGGTTAG AGCTGTTGGATTAGTTGGTTCGCTATTCGCTAGTAAGGCTTACTTGGTGAAATGGTATCT CCACTTCGTTAATGTTCTTCAGTGGAACACACGGTAGCGAGCTGTAAGAATTCTTAATAA TCTGCCGTCCCGTTCTTTTCTCTCCCACAAGAGTAGGATGAAGATTAAGATTTTCGTGGC ACGCTTTTCAAACTGCTAAACAGTGCGTTTTATGCGAAAACTTTTTATATGAAAGTTGTT CTAAAATATCATATTAAAAAAAAAAAAAAAAA



consensusID : consensus_12748#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 776
fasta sequence
                              [AGGAGTCGTCTCCTCAAATGCATGCTACGGTGGAACAGCTGCTTTATTTAATTGTGTTAATTGGGTCGAGAGCAACTCATGGGATGGACGTTATGGGCTTGTTGTTTGCACAGACAGCGCGTTTCTGTTATTGACCACCACCACAAATCCACAAGTGTTTTTCCTTAAGTACTGAAGGCAAGCATAATATAGGTTTACGCTGAAGGTCCGGCTCGTCCAACCGGTGGTGCAGCTGCTATTGCAATGTTGATTGGACCAAATGCTCCAGTTTCTTTCGAAAGCAAGTATAGAGGATCTCATATGGCACATGTCTATGACTTTTACAAGCCTGATCTTGCTAGTGAATACCCGGTGGTCGATGGAAAGCTATCACAGACATGCTATCTCATGGCATTAGATTCCTGCTACAATGTCTTCTGCAAAAAGTATGAAAAGCTTGAGGGAAAGCAATTTTCTATTCATGATGCAGACTATTTTGTATTTCACTCCCCATACAACAAGCTTGTGCAGAAGAGCTTTGCACGCCTATACTACAACGATTTTCTGAGAAAATGCAGCACGGTGGAAGATGGATCAAGAGAAAAACTGGAGCCTTATTCAGGTTTGTCATCCGAGGAAAGCTACCAGAGTAGAGAACTTGAAAAGGCTTCTCAGCAAGTTGCGAAGCACCTCTATGATTCAAAGGTTCAACCAACTACATTAATCCCGAAACAAGTCGGGAATATGTACACAGCGTCTCTATATGCTGCTTTGGCATCAGTGATGCATAACAAAAA]

[+] EMBL CB654794             [AGGAGTCGTCTCCTCAAATGCATGCTACGGTGGAACAGCTGCTTTATTTAATTGTGTTAATTGGGTCGAGAGCAACTCATGGGATGGACGTTATGGGCTTGTTGTTTGCACAGACAGCGCGTTTCTGTTATTGACCACCACCACAAATCCACAAGTGTTTTTCCTTAAGTACTGAAGGCAAGCATAATATAGGTTTACGCTGAAGGTCCGGCTCGTCCAACCGGTGGTGCAGCTGCTATTGCAATGTTGATTGGACCAAATGCTCCAGTTTCTTTCGAAAGCAAGTATAGAGGATCTCATATGGCACATGTCTATGACTTTTACAAGCCTGATCTTGCTAGTGAATACCCGGTGGTCGATGGAAAGCTATCACAGACATGCTATCTCATGGCATTAGATTCCTGCTACAATGTCTTCTGCAAAAAGTATGAAAAGCTTGAGGGAAAGCAATTTTCTATTCATGATGCAGACTATTTTGTATTTCACTCCCCATACAACAAGCTTGTGCAGAAGAGCTTTGCACGCCTATACTACAACGATTTTCTGAGAAAATGCAGCACGGTGGAAGATGGATCAAGAGAAAAACTGGAGCCTTATTCAGGTTTGTCATCCGAGGAAAGCTACCAGAGTAGAGAACTTGAAAAGGCTTCTCAGCAAGTTGCGAAGCACCTCTATGATTCAAAGGTTCAACCAACTACATTAATCCCGAAACAAGTCGGGAATATGTACACAGCGTCTCTATATGCTGCTTTGGCATCAGTGATGCATAACAAAAA]


>consensus_12748#1 AGGAGTCGTCTCCTCAAATGCATGCTACGGTGGAACAGCTGCTTTATTTAATTGTGTTAA TTGGGTCGAGAGCAACTCATGGGATGGACGTTATGGGCTTGTTGTTTGCACAGACAGCGC GTTTCTGTTATTGACCACCACCACAAATCCACAAGTGTTTTTCCTTAAGTACTGAAGGCA AGCATAATATAGGTTTACGCTGAAGGTCCGGCTCGTCCAACCGGTGGTGCAGCTGCTATT GCAATGTTGATTGGACCAAATGCTCCAGTTTCTTTCGAAAGCAAGTATAGAGGATCTCAT ATGGCACATGTCTATGACTTTTACAAGCCTGATCTTGCTAGTGAATACCCGGTGGTCGAT GGAAAGCTATCACAGACATGCTATCTCATGGCATTAGATTCCTGCTACAATGTCTTCTGC AAAAAGTATGAAAAGCTTGAGGGAAAGCAATTTTCTATTCATGATGCAGACTATTTTGTA TTTCACTCCCCATACAACAAGCTTGTGCAGAAGAGCTTTGCACGCCTATACTACAACGAT TTTCTGAGAAAATGCAGCACGGTGGAAGATGGATCAAGAGAAAAACTGGAGCCTTATTCA GGTTTGTCATCCGAGGAAAGCTACCAGAGTAGAGAACTTGAAAAGGCTTCTCAGCAAGTT GCGAAGCACCTCTATGATTCAAAGGTTCAACCAACTACATTAATCCCGAAACAAGTCGGG AATATGTACACAGCGTCTCTATATGCTGCTTTGGCATCAGTGATGCATAACAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12748#0      ATCCGCTCCTGTAGGTACTCGTACTACTCCAATTCTTTCTCTNGCCTACGCCTTCCTCCC 60
consensus_12748#1      ------------------------------------------------------------
                                                                                   

consensus_12748#0      AATCTTGTTGTTTCGGCGGCGGCGGCGGCGGCGGCGGTGAGGGAGATGGCGGCGGAGAGG 120
consensus_12748#1      ------------------------------------------------------------
                                                                                   

consensus_12748#0      AAGGACGTGGGCATTCTCGCCATGGACATCTACTTCCCGCCCACCTGCGTGCTCCAGGAC 180
consensus_12748#1      ------------------------------------------------------------
                                                                                   

consensus_12748#0      GAGCTGGAGAATCATGATGGCGTGAGCAAAGGGAAGTACACCATTGGGCTTGGACAGGAT 240
consensus_12748#1      ------------------------------------------------------------
                                                                                   

consensus_12748#0      AGCATGGCCTTTTGCACTGAAGTGGAAGATGTTATTTCCATGAGCTTGACAGTAGTGAAG 300
consensus_12748#1      ------------------------------------------------------------
                                                                                   

consensus_12748#0      TCACTCCTGGAAAACTATAAGATTGATCCAAAATGTATTGGACGTTTGGAAGTTGGCAGT 360
consensus_12748#1      ------------------------------------------------------------
                                                                                   

consensus_12748#0      GAAACAGTAATAGACAAGAGCAAGTCTATAAAAACATGGCTGATGCAAATATTTGAGGAA 420
consensus_12748#1      ------------------------------------------------------------
                                                                                   

consensus_12748#0      TGCGGTAATACTGACATTGAAGGAGTTGACTCCTCAAATGCATGCTACGGTGGAACAGCT 480
consensus_12748#1      --------------------AGGAGTCGTCTCCTCAAATGCATGCTACGGTGGAACAGCT 40
                                           ****** * *******************************

consensus_12748#0      GCTTTATTTAATTGTGTTAATTGGGTCGAGAGCAACTCATGGGATGGACGTTATGGGCTT 540
consensus_12748#1      GCTTTATTTAATTGTGTTAATTGGGTCGAGAGCAACTCATGGGATGGACGTTATGGGCTT 100
                       ************************************************************

consensus_12748#0      GTTGTTTGCACAGACAGCGCG--------------------------------------- 561
consensus_12748#1      GTTGTTTGCACAGACAGCGCGTTTCTGTTATTGACCACCACCACAAATCCACAAGTGTTT 160
                       *********************                                       

consensus_12748#0      --------------------------------GTTTACGCTGAAGGTCCGGCTCGTCCAA 589
consensus_12748#1      TTCCTTAAGTACTGAAGGCAAGCATAATATAGGTTTACGCTGAAGGTCCGGCTCGTCCAA 220
                                                       ****************************

consensus_12748#0      CCGGTGGTGCAGCTGCTATTGCAATGTTGATTGGACCAAATGCTCCAGTTTCTTTCGAAA 649
consensus_12748#1      CCGGTGGTGCAGCTGCTATTGCAATGTTGATTGGACCAAATGCTCCAGTTTCTTTCGAAA 280
                       ************************************************************

consensus_12748#0      GCAAGTATAGAGGATCTCATATGGCACATGTCTATGACTTTTACAAGCCTGATCTTGCTA 709
consensus_12748#1      GCAAGTATAGAGGATCTCATATGGCACATGTCTATGACTTTTACAAGCCTGATCTTGCTA 340
                       ************************************************************

consensus_12748#0      GTGAATACCCGGTGGTCGATGGAAAGCTATCACAGACATGCTATCTCATGGCATTAGATT 769
consensus_12748#1      GTGAATACCCGGTGGTCGATGGAAAGCTATCACAGACATGCTATCTCATGGCATTAGATT 400
                       ************************************************************

consensus_12748#0      CCTGCTACAATGTCTTCTGCAAAAAGTATGAAAAGCTTGAGGGAAAGCAATTTTCTATTC 829
consensus_12748#1      CCTGCTACAATGTCTTCTGCAAAAAGTATGAAAAGCTTGAGGGAAAGCAATTTTCTATTC 460
                       ************************************************************

consensus_12748#0      ATGATGCAGACTATTTTGTATTTCACTCCCCATACAACAAGCTTGTGCAGAAGAGCTTTG 889
consensus_12748#1      ATGATGCAGACTATTTTGTATTTCACTCCCCATACAACAAGCTTGTGCAGAAGAGCTTTG 520
                       ************************************************************

consensus_12748#0      CACGCCTATACTACAACGATTTTCTGAGAAAATGCAGCACGGTGGAAGATGGATCAAGAG 949
consensus_12748#1      CACGCCTATACTACAACGATTTTCTGAGAAAATGCAGCACGGTGGAAGATGGATCAAGAG 580
                       ************************************************************

consensus_12748#0      AAAAACTGGAGCCTTATTCAGGTTTGTCATCCGAGGAAAGCTACCAGAGTAGAGAACTTG 1009
consensus_12748#1      AAAAACTGGAGCCTTATTCAGGTTTGTCATCCGAGGAAAGCTACCAGAGTAGAGAACTTG 640
                       ************************************************************

consensus_12748#0      AAAAGGTTTCTCAGCAAGTTGCGAAGCACCTCTATGATTCAAAGGTTCAACCAACTACAT 1069
consensus_12748#1      AAAAGGCTTCTCAGCAAGTTGCGAAGCACCTCTATGATTCAAAGGTTCAACCAACTACAT 700
                       ****** *****************************************************

consensus_12748#0      TAATCCCGAAACAAGTCGGGAATATGTACACAGCGTCTCTATATGCTGCTTTGGCATCAG 1129
consensus_12748#1      TAATCCCGAAACAAGTCGGGAATATGTACACAGCGTCTCTATATGCTGCTTTGGCATCAG 760
                       ************************************************************

consensus_12748#0      TGATGCATAACAAAAATGAAACTCTGGCAGGCCAAAGGATTGTCATGTTCTCATACGGCA 1189
consensus_12748#1      TGATGCATAACAAAAA-------------------------------------------- 776
                       ****************                                            

consensus_12748#0      GTGGCTTGACATCAACAATGTTCTCTTTCAAGATCAATGAAGGCCAGCATCCATTCATCC 1249
consensus_12748#1      ------------------------------------------------------------
                                                                                   

consensus_12748#0      TATCAAACATTGCAGGCATACTGGATGTCTCCAAGAAACTGGAGTCCAGGCATGTGGTTG 1309
consensus_12748#1      ------------------------------------------------------------
                                                                                   

consensus_12748#0      CGCCGGAGAAGTTCGTGGCGGCGCTGAAGCTGATGGAGCACCGGTACGGCGCCAAGGATT 1369
consensus_12748#1      ------------------------------------------------------------
                                                                                   

consensus_12748#0      TCACGACGAGCCAGGACACGAGCCTGCTCGCTCCAGGCACCTACTACCTCACCCACGTCG 1429
consensus_12748#1      ------------------------------------------------------------
                                                                                   

consensus_12748#0      ACTCCATGTACAGGAGGTTCTACGCCGTCAAAGGTCAAGCCGTCACCGAAGTGTCCAATG 1489
consensus_12748#1      ------------------------------------------------------------
                                                                                   

consensus_12748#0      GCCATTGAAAAAATTGTGTTGTGATGTGTGGTTCATTCAACCTGAAGCTGCAATAAGCCA 1549
consensus_12748#1      ------------------------------------------------------------
                                                                                   

consensus_12748#0      ACGGCATAGAGGGTTCAGGGCGTGGGTGTACCAAGTTTTCTGATGAAAGCTTGTAAAGGG 1609
consensus_12748#1      ------------------------------------------------------------
                                                                                   

consensus_12748#0      TGCTAGGTTAGAGCTGTTGGATTAGTTGGTTCGCTATTCGCTAGTAAGGCTTACTTGGTG 1669
consensus_12748#1      ------------------------------------------------------------
                                                                                   

consensus_12748#0      AAATGGTATCTCCACTTCGTTAATGTTCTTCAGTGGAACACACGGTAGCGAGCTGTAAGA 1729
consensus_12748#1      ------------------------------------------------------------
                                                                                   

consensus_12748#0      ATTCTTAATAATCTGCCGTCCCGTTCTTTTCTCTCCCACAAGAGTAGGATGAAGATTAAG 1789
consensus_12748#1      ------------------------------------------------------------
                                                                                   

consensus_12748#0      ATTTTCGTGGCACGCTTTTCAAACTGCTAAACAGTGCGTTTTATGCGAAAACTTTTTATA 1849
consensus_12748#1      ------------------------------------------------------------
                                                                                   

consensus_12748#0      TGAAAGTTGTTCTAAAATATCATATTAAAAAAAAAAAAAAAAA 1892
consensus_12748#1      -------------------------------------------
                                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)