These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12749#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1823 fasta sequence [TGTTGCATCACGCATATATATACTTTCTGTCTTTCTTGACATCATGTCGCAATCCAATGGGAAAGAACAGATACGGGGAAGGCCGTTCTCGCAAAATTTCAGCTATGAACTCGCGAAATCTTGCAACATGGATGAAATTTTGCGAATATCTAGTAAAGTGTGTAATGTAGAAACGTACGCGGTCGCTGTCAGGGTGGCGTAGAGGGGGCGGCAAAGTGAGAGAAAAACATTAGGCCGAGTCTGAGTCGTTGCAAGGCTGAGGTGTTTGACGGCAACAAAAAAAGTAAACACGACGGGCTGAGCCTGAGCCTGCCAAATCCACGCGGAGTCCGCT-AAAATTTTTCCACTGGTTCTAGATGATCGCCATCGATGATGCAACGACCAACTGCTTCCTCTGCGGAATAGCTGAATAAATTCAGAGTTCAGGTCCATCTAGGCTGCTGCTGCTGCTCTTCGTCTTTGCTGACCTCGGCACAGGCAGAGAGAGAAGCCAAGAAAAGGGAAAAGAGAGGAAGAAGAGAGGGAAGAGGAGAAGGGAGACGCGCGGTGATCGGAGGTTGATCCATGGCTGGCAGGTCGAGATACGACAACCCCTTCGAGGAGGGCGGCGGCGACGAGGTCAACCCTTTCGCGGATAAAGCTTCTAAAGGAGGATCAGCAGGTCAATCCAGCTATTCCGGAGGCGCATTCTATACAACACAATCACGCCCTAGTGCTCCACCGGCCACCCACCTTTCGCCTCTTCCTCCTGAGCCAGCTGACTTCTACAATGACTTCTCGACCCCGGTGGATATTCCAATGGACACTAGCAAGGATATGAAAACAAGGGAGAAGGAACTTCTTGCAAAGGAAGCCGAGCTAAACAGGCGAGAGAAGGAAATCAAAAGGAGAGAGGAGGCTGCAGCACGAGCTGGTATTGTGTTGGAAGACAAAAACTGGCCTCCATTTTTCCCCATCATCCATAATGATATTGGCAATGAGATACCTGTCCACCTGCAAAGAACACAGTATGTCGCATTTGCGTCACTCTTAGGATTGGTCCTGTGCTTGTTTTGGAACATCATCTGTGTTACGGCTGCTTGGATTAAAGGGGAAGGTCCCAAGATCTGGTTTCTTGCTGTCATCTATTTCATTCTTGGATGCCCAGGTGCCTACTATCTGTGGTACCGACCACTTTACCGTGCCATGAGGAATGAGAGTGCTCTGAAATTTGGATGGTTTTTCCTGTTCTACTTGGTCCACATCGCTTTCTGTGTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGACAGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGGGTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGCATGTGGGTTATTCAGCGTGTGTATCTTTACTTCCGGGGCAGCGGGAAAGAGGCCGAGATGAAGCGCGAGGCTGCACGCAGCGCAGCGAGGGCGGCGTTTTGATGATGATGTACGTATGCGTGAAATGCATAGGAGTGTCCATTGTTTGAAAAATTACTGTGCGCTGTAAATTTGGAGAGTGGTAGTAGAGTTGTTCTGCTTATGATATGTAGGATTTTGTGACTTGATTTGAGATTTCTTCCGCTGTCCATGTCCATTTCTTCTGATCTGTTCTAACTTCATGCTTTGCACTTTAGGGATACTAGTATATATTTGAGAGAGAAAAATTGTGGCATTAGGACTTGCCAGATCTATGTATGTAACAAAAAGCATACCTTTCTGCATGCCGTTTCTAAACATGGAGTTTGATTTTCAAAAAA] [+] EMBL CB640511 [TGTTGCATCACGCATATATATACTTTCTGTCTTTCTTGACATCATGTCGCAATCCAATGGGAAAGAACAGATACGGGGAAGGCCGTTCTCGCAAAATTTCAGCTATGAACTCGCGAAATCTTGCAACATGGATGAAATTTTGCGAATATCTAGTAAAGTGTGTAATGTAGAAACGTACGCGGTCGCTGTCAGGGTGGCGTAGAGGGGGCGGCAAAGTGAGAGAAAAACATTAGGCCGAGTCTGAGTCGTTGCAAGGCTGAGGTGTTTGACGGCAACAAAAAAAGTAAACACGACGGGCTGAGCCTGAGCCTGCCAAATCCACGCGGAGTCCGCTAAAAATTTTTCCACTGGTTCTAGATGATCGCCATCGATGATGCAACGACCAACTGCTTCCTCTGCGGAATAGCTGAATAAATTCAGAGTTCAGGTCCATCTAGGCTGCTGCTGCTGCTCTTCGTCTTTGC ] [+] EMBL AK058432 [ AAATCCACGCGGAGTCCGCT AAAATTTTTCCACTGGTTCTAGATGATCGCCATCGATGATGCAACGACCAACTGCTTCCTCTGCGGAATAGCTGAATAAATTCAGAGTTCAGGTCCATCTAGGCTGCTGCTGCTGCTCTTCGTCTTTGCTGACCTCGGCACAGGCAGAGAGAGAAGCCAAGAAAAGGGAAAAGAGAGGAAGAAGAGAGGGAAGAGGAGAAGGGAGACGCGCGGTGATCGGAGGTTGATCCATGGCTGGCAGGTCGAGA ACGACAACCCCTTCGAGGAGGGCGGCGGCGACGAGGTCAACCCTTTCGCGGATAAAGCTTCTAAAGGAGGATCAGCAGGTCAATCCAGCTATTCCGGAGGCGCATTCTATACAACACAATCACGCCCTAGTGCTCCACCGGCCACCCACCTTTCGCCTCTTCCTCCTGAGCCAGCTGACTTCTACAATGACTTCTCGACCCCGGTGGATATTCCAATGGACACTAGCAAGGATATGAAAACAAGGGAGAAGGAACTTCTTGCAAAGGAAGCCGAGCTAAACAGGCGAGAGAAGGAAATCAAAAGGAGAGAGGAGGCTGCAGCACGAGCTGGTATTGTGTTGGAAGACAAAAACTGGCCTCCATTTTTCCCCATCATCCATAATGATATTGGCAATGAGATACCTGTCCACCTGCAAAGAACACAGTATGTCGCATTTGCGTCACTCTTAGGATTGGTCCTGTGCTTGTTTTGGAACATCATCTGTGTTACGGCTGCTTGGATTAAAGGGGAAGGTCCCAAGATCTGGTTTCTTGCTGTCATCTATTTCATTCTTGGATGCCCAGGTGCCTACTATCTGTGGTACCGACCACTTTACCGTGCCATGAGGAATGAGAGTGCTCTGAAATTTGGATGGTTTTTCCTGTTCTACTTGGTCCACATCGCTTTCTGTGTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGACAGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGGGTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGCATGTGGGTTATTCAGCGTGTGTATCTTTACTTCCGGGGCAGCGGGAAAGAGGCCGAGATGAAGCGCGAGGCTGCACGCAGCGCAGCGAGGGCGGCGTTTTGATGATGATGTACGTATGCGTGAAATGCATAGGAGTGTCCATTGTTTGAAAAATTACTGTGCGCTGTAAATTTGGAGAGTGGTAGTAGAGTTGTTCTGCTTATGATATGTAGGATTTTGTGACTTGATTTGAGATTTCTTCCGCTGTCCATGTCCATTTCTTCTGATCTGTTCTAACTTCATGCTTTGCACTTTAGGGATACTAGTATATATTTGAGAGAGAAAAATTGTGGCATTAGGACTTGCCAGATCTATGTATGTAACAAAAAGCAT ] [+] EMBL CB658992 [ cTCTGAGTTCAGGTCCATCTAGGCTGCTGCTGCTGCTCTTCGTCTTTGCTGACCTCGGCACAGGCAGAGAGAGAAGCCAAGAAAAGGGAAAAGAGAGGAAGAAGAGAGGGAAGAGGAGAAGGGAGACGCGCGGTGATCGGAGGTTGATCCATGGCTGGCAGGTCGAGATACGACAACCCCTTCGAGGAGGGCGGCGGCGACGAGGTCAACCCTTTCGCGGATAAAGCTTCTAAAGGAGGATCAGCAGGTCAATCCAGCTATTCCGGAGGCGCATTCTATACAACACAATCACGCCCTAGTGCTCCACCGGCCACCCACCTTTCGCCTCTTCCTCCTGAGCCAGCTGACTTCTACAATGACTTCTCGACCCCGGTGGATATTCCAATGGACACTAGCAAGGATATGAAAACAAGGGAGAAGGAACTTCTTGCAAAGGAAGCCGAGCTAAACAGGCGAGAGAAGGAAATCAAAAGGAGAGAGGAGGCTGCAGCACGAGCTGGTATTGTGTTGGAACACAAAAACTGGCCTCCATTTTTCCCCATCATCCATAATGATATTGGCAATGAGATACCTGTCCACCTGCAAAGAACACAGTATGTCGCATTTGCGTCACTCTTAGGATTGGTCCTGTGCTTGTTTTGGAACATCATCTGTGTTACGGCTGCTTGGATTAAAGGGGAAAGTCCCAAGATCTGGTTTCTTGCTGTCATCTATTTCATTCTTGGATGCCCAGGTG ] [+] EMBL CB658956 [ ttcccctTTCAGGTCCATCTAGGCTGCTGCTGCTGCTCTTCGTCTTTGCTGACCTCGGCACAGGCAGAGAGAGAAGCCAAGAAAAGGGAAAAGAGAGGAAGAAGAGAGGGAAGAGGAGAAGGGAGACGCGCGGTGATCGGAGGTTGATCCATGGCTGGCAGGTCGAGATACGACAACCCCTTCGAGGAGGGCGGCGGCGACGAGGTCAACCCTTTCGCGGATAAAGCTTCTAAAGGAGGATCAGCAGGTCAATCCAGCTATTCCGGAGGCGCATTCTATACAACACAATCACGCCCTAGTGCTCCACCGGCCACCCACCTTTCGCCTCTTCCTCCTGAGCCAGCTGACTTCTACAATGACTTCTCGACCCCGGTGGATATTCCAATGGACACTAGCAAGGATATGAAAACAAGGGAGAAGGAACTTCTTGCAAAGGAAGCCGAGCTAAACAGGCGAGAGAAGGAAATCAAAAGGAGAGAGGAGGCTGCAGCACGAGCTGGTATTGTGTTGGAAGACAAAAACTGGCCTCCATTTTTCCCCATCATCCATAATGATATTGGCAATGAGATACCTGTCCACCTGCAAAGAACACAGTATGTCGCATTTGCGTCACTCTTAGGATTGGTCCTGTGCTTGTTTTGGAACATCATCTGTGTTACGGCTGCTTGGATTAAAGGGGAAGGTCCCAAGATCTGGTTTCTTGCTGTCATCTATTTCATTCTTGGATGCCCAGGTGCCTACTATCTGTGGTACCGACCACTTTACCGTGCCATGAGGAATGAGAGTGCTCTG ] [+] EMBL AK099288 [ GCTGCTCTTCGTCTTTGCTGACCTCGGCACAGGCAGAGAGAGAAGCCAAGAAAAGGGAAAAGAGAGGAAGAAGAGAGGGAAGAGGAGAAGGGAGACGCGCGGTGATCGGAGGTTGATCCATGGCTGGCAGGTCGAGATACGACAACCCCTTCGAGGAGGGCGGCGGCGACGAGGTCAACCCTTTCGCGGATAAAGCTTCTAAAGGAGGATCAGCAGGTCAATCCAGCTATTCCGGAGGCGCATTCTATACAACACAATCACGCCCTAGTGCTCCACCGGCCACCCACCTTTCGCCTCTTCCTCCTGAGCCAGCTGACTTCTACAATGACTTCTCGACCCCGGTGGATGTTCCAATGGACACTAGCAAGGATATGAAAACAAGGGAGAAGGAACTTCTTGCAAAGGAAGCCGAGCTAAACAGGCGAGAGAAGGAAATCAAAAGGAGAGAGGAGGCTGCAGCACGAGCTGGTATTGTGTTGGAAGACAAAAACTGGCCTCCATTTTTCCCCATCATCCATAATGATATTGGCAATGAGATACCTGTCCACCTGCAAAGAACACAGTATGTCGCATTTGCGTCACTCTTAGGATTGGTCCTGTGCTTGTTTTGGAACATCATCTGTGTTACGGCTGCTTGGATTAAAGGGGAAGGTCCCAAGATCTGGTTTCTTGCTGTCATCTATTTCATTCTTGGATGCCCAGGTGCCTACTATCTGTGGTACCGACCACTTTACCGTGCCATGAGGAATGAGAGTGCTCTGAAATTTGGATGGTTTTTCCTGTTCTACTTGGTCCACATCGCTTTCTGTGTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGACAGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGGGTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGCATGTGGGTTATTCAGCGTGTGTATCTTTACTTCCGGGGCAGCGGGAAAGAGGCCGAGATGAAGCGCGAGGCTGCACGCAGCGCAGCGAGGGCGGCGTTTTGATGATGATGTACGTATGCGTGAAATGCATAGGAGTGTCCATTGTTTGAAAAATTACTGTGCGCTGTAAATTTGGAGAGTGGTAGTAGAGTTGTTCTGCTTATGATATGTAGGATTTTGTGACTTGATTTGAGATTTCTTCCGCTGTCCATGTCCATTTCTTCTGATCTGTTCTAACTTCATGCTTTGCACTTTAGGGATACTAGTATATATTTGAGAGAGAAAAATTGTGGCATTAGGACTTGCCAGATCTATGTATGTAACAAAAAGCATACCTTTCTGCATGCCGTTTCTAAACATGGAGTTTGAT ] [+] EMBL C25920 [ AAGCCAAGAAAAGGGAAAAGAGAGGAAGAAGAGAGGGAAGAGGAGAAGGGAGACGCGCGGTGATCGGAGGTTGATCCATGGCTGGCAGGTCGAGATACGACAACCCCTTCGAGGAGGGCGGCGGCGACGAGGTCAACCCTTTCGCGGATAAAGCTTCTAAAGGAGGATCAGCAGGTCAATCCAGCTATTCCGGA GCGCATTCTATACAACACAATCACGCCCTAGTGCTCCACCGGCCACCCACCTTTCGCCTCTTCCTCCTGAGCCAGCTGACTTCTACAATGACTTCTCGACCCCGGTGGATATTCCAATGGACACTAGCAAGGATATNAAAACAAGGGAGAAGG ACTTTTTGCAAAGGAAGCCGAGCTAAAC ] [+] EMBL CA755591 [ CCTAGTGCTCCACCGGCCACCCACCTTTCGCCTCTTCCTCCTGAGCCAGCTGACTTCTACAATGACTTCTCGACCCCGGTGGATATTCCAATGGACACTAGCAAGGATATGAAAACAAGGGAGAAGGAACTTCTTGCAAAGGAAGCCGAGCTAAACAGGCGAGAGAAGGAAATCAAAAGGAGAGAGGAGGCTGCAGCACGAGCTGGTATTGTGTTGGAAGACAAAAACTGGCCTCCATTTTTCCCCATCATCCATAATGATATTGGCAATGAGATACCTGTCCACCTGCAAAGAACACAGTATGTCGCATTTGCGTCACTCTTAGGATTGGTCCTGTGCTTGTTTTGGAACATCATCTGTGTTACGGCTGCTTGGATTAAAGGGGAAGGTCCCAAGATCTGGTTTCTTGCTGTCATCTATTTCATTCTTGGATGCCCAGGTGCCTACTATCTGTGGTACCGACCACTTTACCGTGCCATGAGGAATGAGAGTGCTCTGAAATTTGGATGGTTTTTCCTGTTCTACTTGGTCCACATCGCTTTCTGTGTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGACAGGAAT ] [-] EMBL CB658993 [ ACTGGCCTCCATTTTTCCCCATCATCCATAATGATATTGGCAATGAGATACCTGTCCACCTGCAAAGAACACAGTATGTCGCATTTGCGTCACTCTTAGGATTGGTCCTGTGCTTGTTTTGGAACATCATCTGTGTTACGGCTGCTTGGATTAAAGGGGAAGGTCCCAAGATCTGGTTTCTTGCTGTCATCTATTTCATTCTTGGATGCCCAGGTGCCTACTATCTGTGGTACCGACCACTTTACCGTGCCATGAGGAATGAGAGTGCTCTGAAATTTGGATGGTTTTTCCTGTTCTACTTGGTCCACATCGCTTTCTGTGTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGACAGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGGGTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGCATGTGGGTTATTCAGCGTGTGTATCTTTACTTCCGGGGCAGCGGGAAAGAGGCCGAGATGAAGCGCGAGGCTGCACGCAGCGCAGCGAGGGCGGCGTTTTGATGATGATGTACGTATGCGTGAAATGCATAGGAGTGTCCATTGTTTGAAAAATTACTGTGCGCTGTAAATTTGGAGAGTGGTAGTAGAGTTGTTCTGCTTATGATATGTAGGATTTTGTGACTTGATTTGAGATTTCTTCCGCTGTCCATGTCCATTTCTTCTGATCTGTTCTAACTTCATGCTTTGCACTTTAGGGATGCTAGTATATATTTGAGAGAGAAAAATTGgg ] [-] EMBL CB658957 [ ATCATCCATAATGATATTGGCAATGAGATACCTGTCCACCTGCAAAGAACACAGTATGTCGCATTTGCGTCACTCTTAGGATTGGTCCTGTGCTTGTTTTGGAACATCATCTGTGTTACGGCTGCTTGGATTAAAGGGGAAGGTCCCAAGATCTGGTTTCTTGCTGTCATCTATTTCATTCTTGGATGCCCAGGTGCCTACTATCTGTGGTACCGACCACTTTACCGTGCCATGAGGAATGAGAGTGCTCTGAAATTTGGATGGTTTTTCCTGTTCTACTTGGTCCACATCGCTTTCTGTGTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGACAGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTTATCGTTGGGGTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGCATGTGGGTTATTCAGCGTGTGTATCTTTACTTCCGGGGCAGCGGGAAAGAGGCCGAGATGAAGCGCGAGGCTGCACGCAGCGCAGCGAGGGCGGCGTTTTGATGATGATGTACGTATGCGTGAAATGCATAGGAGTGTCCATTGTTTGAAAAATTACTGTGCGCTGTAAATTTGGAGAGTGGTAGTAGAGTTGTTCTGCTTATGATATGTAGGATTTTGTGACTTGATTTGAGATTTCTTCCGCTGTCCATGTCCATTTCTTCTGATCTGTTCTAACTTCATGCTTTGCACTTTAAGGGTACTAGTATATATTTGAG ] [-] EMBL CB659044 [ ACCGTGCCATGAGGAATGAGAGTGCTCTGAAATTTGGATGGTTTTTCCGGTTCTACTGGGTCCACATCGCTTTCTGTGTGTATGCGGCTGTTTCTCCATCAATTCTATTTGTAGGGAAATCATTGACAGGAATTTTTCCAGCAATCAGCTTAATAGGCAATAGTGTTATCGTTGGGGTGTTTTATTTTGTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGCATGTGGGTTATTCAGCGTGGGTATCTTTACTTCCGGGGCAGCGGGAAAGAGGCCGA ] [+] EMBL AU166328 [ CAGCATGTGGGTTATTCAGCGTGTGTATCTTTACTTCCGGGGCAGCGGGAAAGAGGCCGAGATGAAGCGCGAGGCTGCACGCAGCGCAGCGAGGGCGGCGTTTTGATGATGATGTACGTATGCGTGAAATGCATAGGAGTGTCCATTGTTTGAAAAATTACTGTGCGCTGTAAATTTGGAGAGTGGTAGTAGAGTTGTTCTGCTTATGATATGTAGGATTTTGTGACTTGATTTGAGATTTCTTCCGCTGTCCATGTCCATTTCTTCTGATCTGTTCTAACTTCATGCTTTGCACTTTAGGGATACTAGTATATATTTGAGAGAGAAAAATTGTGGCATTAGGACTTGCCAGATCTATGTATGTAACAAAAAGCATACCTTTCTGCATGCCGTTTCTAAACATGGAGTTTGATTTTCAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||