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Oryza sativa
cluster # 12788 cluster # 12788       Sequences # 11       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12788#0 length = 2008 sequences # 10  
consensus_12788#1 length = 782 sequences # 1  

consensusID : consensus_12788#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 2008
fasta sequence
                              [TGCTTCCAGAAGCGAGCGAGCTCTCCTTTCCTTTCTCCTACGCCTAGGCTTCTAGAAGCTTCCTTTCCAAATAGGGGCTAATCTCCTGAGCTCGAAGCTCTCCTCGTCAGCTTCAGGTGGTCGGGTGCTGCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTCCTCAAATCTCCCCGAGAGTTCGTGCTTTGCCGCGAGCAGCGAGCTGCGATCTCGCCTGAATCCTTCGTCGGC-GGGGGGGATGAATTGATCACGCGGTGTGCGCTTTCTGATTCTGTCGGGTTCCTTTCAGATGCACGAGCACGTCGGTGTCCGCCTCCTCTTTGCTTGATTTGCTTCCGCTGCTGCTGTTAGGTGCGCGAGAGCTCGTGATGGGGTGAAGCGTGTGTTCACAGGATTAGATTGCGCTCGCCTGATTCGCTGCATCTTGTTCTTCTTGCTGCCGCCTACGCGACTTGATTTCGTCACGCCAAAGCCGTGACAGGCTGATTGCTACCTTGCTTGGCGATCTGTGCTTTAAATTCCACCATTGTTTGCTGGTGCTGGATGAGCAAATTCTTGGTTCGTGTGGCTCTAGTTGGTAGTTCTTGATTGAGGTGAGGTTCTGAGCTGCCATGAACTACCGAGTGGTGAACCCGGTGAAGGTGGAGAGCGGGCCGTCGACGGGCGTGGCGAATGGCCAGCCGCCGAGGCCGATGGACGGGCTCGCCGACGGCGGCCCACCGCCGTTCCTCACCAAGACGTACGACATGGTGGATGACCCGACCACGGACGCCGTCGTGTCGTGGAGCGCCACCAACAACAGCTTCGTGGTGTGGGATCCTCACCTCTTTGGGAACGTGCTGCTGCCGAGGTACTTCAAGCACAACAACTTCTCCAGCTTCGTCCGGCAGCTCAATACCTATGGCTTCAGGAAGGTGGATCCTGACAAGTGGGAATTTGCAAATGAGGGTTTTCTGAGAGGACAGAAGCATCTCCTTAAAGGCATAAAGCGTCGGAAACCTCCGAATTCATCTCCAAGTCAGCAATCTCTTGGCTCATTCCTTGAGGTAGGGCACTTCGGATATGAGGGAGAGATTGATCAGTTGAAGAGGGACAAACATCTGTTGATGGCTGAAGTGGTGAAGCTGAGGCAGGAGCAGCAAAACACAAAGTCAGACCTGCAAGCTATGGAACAGAAGCTACAAGGTACTGAGCAAAAGCAACAGCACATGATGGCATTCTTGTCACGAGTTATGCATAATCCTGAGTTCATACGCCAGCTGTTCTCCCAGAGTGAGATGAGGAAGGAGCTTGAAGAGTTCGTCTCAAAGAAAAGAAGGCGCCGCATTGACCAGGGACCTGAACTTGATAGCATGGGTACCGGTTCTAGCCCCGAGCAAGTGTCACAGGTAATGTTTGAACCACATGATCCAGTGGATTCACTTTTCAATGGTGTTCCATCAGATCTTGAAAGTTCATCTGTTGAGGCCAATGGAGG-CAAGGCGC-AACAAGATGTTGCTTCCAGTAGCTCTGAA-CA-CGGGAAAATCAAGCCATCTAACGGAGAGTTAAATGAGGATTTCTGGGAGGACCTGCTGCACGAGGGTGGGCTCGATGAGGATACCAGGAACCCCGCTATAGATGATATGAACTTGCTGTCTCAAAAGAT-GGGCTACCTCAACTCAAGCAGCACCAAATCGCCACAGTAGTAGCTCTGGTCTGATCTTGCTGCAGCTCCAACGACCCTTGAGTACTTGTTAATCAAGCTTGTCATTATACTTATCCGCTTTGAGGATGATCAATTTGAGTAGGTCTCCTCCCCCATGGTGATGATCTTATGGTAGCATCAGCTGTACATACTATTGCCGCAATAATTACCATCGTATTCTGTTCAGCTTTGTGGAATTAGTTTTGGATCTGAATGTATGGTAC-TTTGACAGTGGACTTGAGGGTGCTGTATGTACATATAACAGTCTAACTAAATGCAGTTGTGCGTTGTAATGATGTATAGTTTTGCTTCAAAAAAAAAA]

[+] EMBL AK068660             [TGCTTCCAGAAGCGAGCGAGCTCTCCTTTCCTTTCTCCTACGCCTAGGCTTCTAGAAGCTTCCTTTCCAAATAGGGGCTAATCTCCTGAGCTCGAAGCTCTCCTCGTCAGCTTCAGGTGGTCGGGTGCTGCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTCCTCAAATCTCCCCGAGAGTTCGTGCTTTGCCGCGAGCAGCGAGCTGCGATCTCGCCTGAATCCTTCGTCGGC GGGGGGGATGAATTGATCACGCGGTGTGCGCTTTCTGATTCTGTCGGGTTCCTTTCAGATGCACGAGCACGTCGGTGTCCGCCTCCTCTTTGCTTGATTTGCTTCCGCTGCTGCTGTTAGGTGCGCGAGAGCTCGTGATGGGGTGAAGCGTGTGTTCACAGGATTAGATTGCGCTCGCCTGATTCGCTGCATCTTGTTCTTCTTGCTGCCGCCTACGCGACTTGATTTCGTCACGCCAAAGCCGTGACAGGCTGATTGCTACCTTGCTTGGCGACCTGTGCTTTAAATTCCACCATTGTTTGCTGGTGCTGGATGAGCAAATTCTTGGTTCGTGTGGCTCTAGTTGGTAGTTCTTGATTGAGGTGAGGTTCTGAGCTGCCATGAACTACCGAGTGGTGAACCCGGTGAAGGTGGAGAGCGGGCCGTCGACGGGCGTGGCGAATGGCCAGCCGCCGAGGCCGATGGACGGGCTCGCCGACGGCGGCCCACCGCCGTTCCTCACCAAGACGTACGACATGGTGGATGACCCGACCACGGACGCCGTCGTGTCGTGGAGCGCCACCAACAACAGCTTCGTGGTGTGGGATCCTCACCTCTTTGGGAACGTGCTGCTGCCGAGGTACTTCAAGCACAACAACTTCTCCAGCTTCGTCCGGCAGCTCAATACCTATGGCTTCAGGAAGGTGGATCCTGACAAGTGGGAATTTGCAAATGAGGGTTTTCTGAGAGGACAGAAGCATCTCCTTAAAGGCATAAAGCGTCGGAAACCTCCGAATTCATCTCCAAGTCAGCAATCTCTTGGCTCATTCCTTGAGGTAGGGCACTTCGGATATGAGGGAGAGATTGATCAGTTGAAGAGGGACAAACATCTGTTGATGGCTGAAGTGGTGAAGCTGAGGCAGGAGCAGCAAAACACAAAGTCAGACCTGCAAGCTATGGAACAGAAGCTACAAGGTACTGAGCAAAAGCAACAGCACATGATGGCATTCTTGTCACGAGTTATGCATAATCCTGAGTTCATACGCCAGCTGTTCTCCCAGAGTGAGATGAGGAAGGAGCTTGAAGAGTTCGTCTCAAAGAAAAGAAGGCGCCGCATTGACCAGGGACCTGAACTTGATAGCATGGGTACCGGTTCTAGCCCCGAGCAAGTGTCACAGGTAATGTTTGAACCACATGATCCAGTGGATTCACTTTTCAATGGTGTTCCATCAGATCTTGAAAGTTCATCTGTTGAGGCCAATGGAGG CAAGGCGC AACAAGATGTTGCTTCCAGTAGCTCTGAA CA CGGGAAAATCAAGCCATCTAACGGAGAGTTAAATGAGGATTTCTGGGAGGACCTGCTGCACGAGGGTGGGCTCGATGAGGATACCAGGAACCCCGCTATAGATGATATGAACTTGCTGTCTCAAAAGAT GGGCTACCTCAACTCAAGCAGCACCAAATCGCCACAGTAGTAGCTCTGGTCTGATCTTGCTGCAGCTCCAACGACCCTTGAGTACTTGTTAATCAAGCTTGTCATTATACTTATCCGCTTTGAGGATGATCAATTTGAGTAGGTCTCCTCCCCCATGGTGATGATCTTATGGTAGCATCAGCTGTACATACTATTGCCGCAATAATTACCATCGTATTCTGTTCAGCTTTGTGGAATTAGTTTTGGATCTGAATGTATGGTAC TTTGACAGTGGACTTGAGGGTGCTGTATGTACATATAACAGTCTAACTAAATGCAGTTGTGCGTT                                 ]
[+] EMBL CB646209             [                  AGCTCTCCTTTCCTTTCTCCTACGCCTAGGCTTCTAGAAGCTTCCTTTCCAAATAGGGGCTAATCTCCTGAGCTCGAAGCTCTCCTCGTCAGCTTCAGGTGGTCGGGTGCTGCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTCCTCAAATCTCCCCGAGAGTTCGTGCTTTGCCGCGAGCAGCGAGCTGCGATCTCGCCTGAATCCTTCATCGGC GGGGGGGATGAATTGATCACGCGGTGTGCGCTTTCTGATTCTGTCGGGTTCCTTTCAGATGCACGAGCACGACGGTGTCCGCCTCCTCTTTGCTTGATTTGCTTCCGCTGCTGCTGTTAGGTGCGCGAGAGCTCGTGATGGGGTGAAGCGTGTGTTCACAGGATTAGATTGCGCTCGCCTGATTCGCTGCATCTTGTTCTTCTTGCTGCCGCCTACGCGACTTGATTTCGTCACGCCAAAGCCGTGACAGGCTGATTGCTACCTTGCTTGGCGATCTGTGCTTTAAATTCCACCATTGTTTGCTGGTGCTGGATGAGCAAATTCTTGGATCGTGTGGCTCTAGTTGGTAGTTCTTGATTGAGGTGAGGTTCTGAGCTGCCATGAACTACCGAGTGGTGAACCCGGTGAAGGTGGAGAGCGGGCCGTCGACTGGCGTGGCGAATGGCCAGCCGCCGAGGCCGATGGACGGGCTCGCCGACGGCGGCCCACCGCCGTTCCTCACCAAGACGTACGACAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB655892             [                       TCCTTTCCTTTCTCCTACGCCTAGGCTTCTAGAAGCTTCCTTTCCAAATAGGGGCTAATCTCCTGAGCTCGAAGCTCTCCTCGTCAGCTTCAGGTGGTCGGGTGCTGCCTCCTCCTCCTCCTCCACCTCCTCCTCGTCCTCAAATCTCCCCGAGAGTTCGTGCTTTGCCGCGAGCAGCGAGCTGCGATCTCGCCTGAATCCTTCATCGGCGGGGGGGGATGAATTGATCACGCGGTGTGCGCTTTCTGATTCTGTCAGGTTCCTTTCAAATGCACGAACACGTCGGTGTCCGCCTCCTCTTTGCTTGATTTGCTTCCGCTGCTGCTGTTATGTGCGCGAGAGCTCGTGATGGGGTGAAGCGTGTGTTCACAGGATTAGATTGCGCTCGCCTGATTCGCTGCATCTTGTTCTTCTTGCTGCCGCCTACTCGACTTGATTTCGACACGCCAAAGCCGTGACAGGCTGATTGCTACCTTGCTTGGCGATCTGTGCTTTAAATTCCACCATTGTTTGCTGGTGCTGGATGAGCAAATTCTTGGTTCGTGTGGCTCTAGTTGGTACTTCTTGATTGAGGTGAGGTTCTGAGCTGCCATGAACTACCt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL C28866               [                                                                                                                                                                                 AGTTCGTGCTTTGCCGCGAGCAGCGAGCTGCGATCTCGCCTGAATCCTTCGTCGGC GGGGGGGATGAATTGATCACGCGGTGTGCGCTTTCTGATTCTGTCGGGTTCCTTTCAGATGCACGAGCACGTCGGTGTCCGCCTCCTCTTTGCTTGATTTGCTTCCGCTGCTGCTGTTAGGTGCGCGANAGCTCGTNATGGGGTGAAGCGTGTGTTCACAGGATTAGATTGCGCTCGCCTGATTCGCTGCATCTTGTTCTTCTTGCTGCCGCCTACGCGACTTGATTTCGTCACGNCAAAGCCGTGACAGGCTGATTGCTACCTTGCTTGGCGATCTGTGCTTTAAATTCCACCATTGTTTGCTGGTGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CA767409             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGCTACAAGGTACTGAGCAAAAGCAACAGCACATGATGGCATTCTTGTCACGAGTTATGCATAATCCTGAGTTCATACGCCAGCTGTTCTCCCAGAGTGAGATGAGGAAGGAGCTTGAAGAGTTCGTCTCAAAGAAAAGAAGGCGCCGCATTGACCAGGGACCTGAACTTGATAGCATGGGTACCGGTTCTAGCCCCGAGCAAGTGTCACAGGTAATGTTTGAACCACATGATCCAGTGGATTCACTTTTCAATGGTGTTCCATCAGATCTTGAAAGTTCATCTGTTGAGGCCAATGGAGG CAAGGCGC AACAAGATGTTGCTTCCAGTAGCTCTGAA CA CGGGAAAATCAAGCCATCTAACGGAGAGTTAAATGAGGATTTCTGGGAGGACCTGCTGCACGAGGGTGGGCTCGATGAGGATACCAGGAACCCCGCTATAGATGATATGAACTTGCTGTCTCAAAAGAT GGGCTACCTCAACTCAAGCAGCACCAAATCGCCACAGTAGTAGCTCTGGTCTGATCTTGCTGCAGCTCCAACGACCCTTGAGTACTTGTTAATCAAGCTTGTCATTATACTTATCCGCTTTGAGGATGATCAATTTGAGTAGGTCTCCTNCCCCATGGTGATGATCTTATGGTAGCATCAGCTGTACATACTATTGCCGCAATAATTACCATCGTATTCTGNTCAGCTTTGTGGAATTAGTTTTGGATCTGAATGNATGGTACTTTTGACAGNGGACTTGANGGTGCTGNATGTACATATAACAGTCTAACTAAATGCAGTTGGGCGTTGGAATGATGNATAGNTTT               ]
[-] EMBL CB655893             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AATCCTGAGTTCATACGCCAGCTGTTCTCCCAGAGTGAGATGAGGAAGGAGCTTGAAGAGTTCGTCTCAAAGAAAAGAAGGCGCCGCATTGACCAGGGACCTGAACTTGATAGCATGGGTACCGGTTCTAGCCCCGAGCAAGTGTCACAGGTAATGTTTGAACCACATGATCCAGTGGATTCACTTTTCAATGGTGTTCCATCAGATCTTGAAAGTTCATCTGTTGAGGCCAATGGAGG CAAGGCGC AACAAGATGTTGCTTCCAGTAGCTCTGAA CA CGGGAAAATCAAGCCATCTAACGGAGAGTTAAATGAGGATTTCTGGGAGGACCTGCTGCACGAGGGTGGGCTCGATGAGGATACCAGGAACCCCGCTATAGATGATATGAACTTGCTGTCTCAAAAGAT GGGCTACCTCAACTCAAGCAGCACCAAATCGCCACAGTAGTAGCTCTGGTCTGATCTTGCTGCAGCTCCAACGACCCTTGAGTACTTGTTAATCAAGCTTGTCATTATACTTATCCGCTTTGAGGATGATCAATTTGAGTAGGTCTCCTCCCCCATGGTGATGATCTTATGGTAGCATCAGCTGTACATACTATTGCCGCAATAATTACCATCGTATTCTGTTCAGCTTTGTGGAATTAGTTTTGGATCTGAATGTATGGTAC TTTGACAGTGGACTTGAGGGTGCTGTATGTACATATAACAGTCTAACTAAATGCAGTTGTGC                                    ]
[+] EMBL BQ907710             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTTCCATCAGATCTNGAAAGTTCATC  TTGAGCCCAATGGAGC CAAGGCGCAAACAAGATGTTGCTTCCAGTAGCTCTGAA CA CGGGAAAATCAAGCCATCTAACGGAGAGTTAAATGAGGATTTCTGGGAGGACCTGCTGCACGAGGGTGGGCTCGATGAGGATACCAGGAACCCCGCTATAGATGATATGAACTTGCTGTCTCAAAAGAT GGGCTACCTCAACTCAAGCAGCACCAAATCGTCACAGTAGTAGCTCTGGTCTGATCTTGCTGCAGCTCCAACGACCCTTGAGTACTTGTTAATCAAGCTTGTCATTATACTTATCCGCTTTGAGGATGATCAATTTGAGTAGGTCTCCTCCCCCATGGTGATGATCTTATGGTAGCATCAGCTGTACATACTATTGCCGCAATAATTACCATCGTATTCTGTTCAGCTTTGTGGAATTAGTTTTGGATCTGAATGTATGGTAC TTTGACAGTGGACTTGAGGGTGCTGTATGTACATATAACAGTCTAACTAAATGCAGTTGTGCGTTGTAATGATGTAaaaa                  ]
[+] EMBL BQ907103             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGAGGCCAAGGCGC AACAAGATGTTGCTTCCAGTAGCTCTGAACCACCGGGAAAATCAAGCCATCTAACGGAGAGTTAAATGAGGATTTCTGGGAGGACCTGCTGCACGAGGGTGGGCTCGATGAGGATACCAGGAACCCCGCTATAGATGATATGAACTTGCTGTCTCAAAAGATGGGGCTACCTCAACTCAAGCAGCACCAAATCGTCACAGTAGTAGCTCTGGTCTGATCTTGCTGCAGCTCCAACGACCCTTGAGTACTTGTTAATCAAGCTTGTCATTATACTTATCCGCTTTGAGGATGATCAATTTGAGTAGGTCTCCTCCCCCATGGTGATGATCTTATGGTAGCATCAGCTGTACATACTATTGCCGCAATAATTACCATCGNATTCTGTTCAGCTTTGTGGAATTAGTTTTGGATCTGAATGTATGGTAC TTTGACAGTGGACTTGAGGGT CTGTATGTACATATAACAGTCTAACTAAATGCAGTTGTCCCTTGTAATGATGTATAGTTTTGCTTCAAAA      ]
[+] EMBL AU174661             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGGATTTCTGGGAGGACCTGCTGCACGAGGGTGGGCTCGATGAGGATACCAGGAACCCCGCTATAGATGATATGAACTTGCTGTCTCAAAAGAT GGGCTACCTCAACTCAAGCAGCACCAAATCGCCACAGTAGTAGCTCTGGTCTGATCTTGCTGCAGCTCCAACGACCCTTGAGTACTTGTTAATCAAGCTTGTCATTATACTTATCCGCTTTGAGGATGATCAATTTGAGTAGGTCTCCTCCCCCATGGTGATGATCTTATGGTAGCATCAGCTGTACATACTATTGCCGCAATAATTACCATCGTATTCTGTTCAGCTTTGTGGAATTAGTTTTGGATCTGAATGTATGGTAC TTTGACAGTGGACTTGAGGGTGCTGTATGTACATATAACAGTCTAACTAAATGCAGTTGTGCGTTGTAATGATGTATAGTTTTGCTTCAAAAAAAAAA]
[+] EMBL BQ906600             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ccGATCTTATGGTAGCATCAGCTGTACATACTATTGCCGCAATAATTACCATCGTATTCTGTTCAaaaaaaa                                                                                                                                  ]


>consensus_12788#0 TGCTTCCAGAAGCGAGCGAGCTCTCCTTTCCTTTCTCCTACGCCTAGGCTTCTAGAAGCT TCCTTTCCAAATAGGGGCTAATCTCCTGAGCTCGAAGCTCTCCTCGTCAGCTTCAGGTGG TCGGGTGCTGCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTCCTCAAATCTCCCCGAGAGT TCGTGCTTTGCCGCGAGCAGCGAGCTGCGATCTCGCCTGAATCCTTCGTCGGCGGGGGGG ATGAATTGATCACGCGGTGTGCGCTTTCTGATTCTGTCGGGTTCCTTTCAGATGCACGAG CACGTCGGTGTCCGCCTCCTCTTTGCTTGATTTGCTTCCGCTGCTGCTGTTAGGTGCGCG AGAGCTCGTGATGGGGTGAAGCGTGTGTTCACAGGATTAGATTGCGCTCGCCTGATTCGC TGCATCTTGTTCTTCTTGCTGCCGCCTACGCGACTTGATTTCGTCACGCCAAAGCCGTGA CAGGCTGATTGCTACCTTGCTTGGCGATCTGTGCTTTAAATTCCACCATTGTTTGCTGGT GCTGGATGAGCAAATTCTTGGTTCGTGTGGCTCTAGTTGGTAGTTCTTGATTGAGGTGAG GTTCTGAGCTGCCATGAACTACCGAGTGGTGAACCCGGTGAAGGTGGAGAGCGGGCCGTC GACGGGCGTGGCGAATGGCCAGCCGCCGAGGCCGATGGACGGGCTCGCCGACGGCGGCCC ACCGCCGTTCCTCACCAAGACGTACGACATGGTGGATGACCCGACCACGGACGCCGTCGT GTCGTGGAGCGCCACCAACAACAGCTTCGTGGTGTGGGATCCTCACCTCTTTGGGAACGT GCTGCTGCCGAGGTACTTCAAGCACAACAACTTCTCCAGCTTCGTCCGGCAGCTCAATAC CTATGGCTTCAGGAAGGTGGATCCTGACAAGTGGGAATTTGCAAATGAGGGTTTTCTGAG AGGACAGAAGCATCTCCTTAAAGGCATAAAGCGTCGGAAACCTCCGAATTCATCTCCAAG TCAGCAATCTCTTGGCTCATTCCTTGAGGTAGGGCACTTCGGATATGAGGGAGAGATTGA TCAGTTGAAGAGGGACAAACATCTGTTGATGGCTGAAGTGGTGAAGCTGAGGCAGGAGCA GCAAAACACAAAGTCAGACCTGCAAGCTATGGAACAGAAGCTACAAGGTACTGAGCAAAA GCAACAGCACATGATGGCATTCTTGTCACGAGTTATGCATAATCCTGAGTTCATACGCCA GCTGTTCTCCCAGAGTGAGATGAGGAAGGAGCTTGAAGAGTTCGTCTCAAAGAAAAGAAG GCGCCGCATTGACCAGGGACCTGAACTTGATAGCATGGGTACCGGTTCTAGCCCCGAGCA AGTGTCACAGGTAATGTTTGAACCACATGATCCAGTGGATTCACTTTTCAATGGTGTTCC ATCAGATCTTGAAAGTTCATCTGTTGAGGCCAATGGAGGCAAGGCGCAACAAGATGTTGC TTCCAGTAGCTCTGAACACGGGAAAATCAAGCCATCTAACGGAGAGTTAAATGAGGATTT CTGGGAGGACCTGCTGCACGAGGGTGGGCTCGATGAGGATACCAGGAACCCCGCTATAGA TGATATGAACTTGCTGTCTCAAAAGATGGGCTACCTCAACTCAAGCAGCACCAAATCGCC ACAGTAGTAGCTCTGGTCTGATCTTGCTGCAGCTCCAACGACCCTTGAGTACTTGTTAAT CAAGCTTGTCATTATACTTATCCGCTTTGAGGATGATCAATTTGAGTAGGTCTCCTCCCC CATGGTGATGATCTTATGGTAGCATCAGCTGTACATACTATTGCCGCAATAATTACCATC GTATTCTGTTCAGCTTTGTGGAATTAGTTTTGGATCTGAATGTATGGTACTTTGACAGTG GACTTGAGGGTGCTGTATGTACATATAACAGTCTAACTAAATGCAGTTGTGCGTTGTAAT GATGTATAGTTTTGCTTCAAAAAAAAAA



consensusID : consensus_12788#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 782
fasta sequence
                              [TCTCTTGGCTCATTCCTTGAGGTAGGGCACTTCGGATATGAGGGAGAGATTGATCAGTTGAAGAGGGACAAACATCTGTTGATGGCTGAAGTGGTGAAGCTGAGGCAGGAGCAGCAAAACACAAAGTCAGACCTGCAAGCTATGGAACAGAAGCTACAAGCTGTTCTCCCAGAGTGAGATGAGGAAGGAGCTTGAAGAGTTCGTCTCAAAGAAAAGAAGGCGCCGCATTGACCAGGGACCTGAACTTGATAGCATGGGTACCGGTTCTAGCCCCGAGCAAGTGTCACAGGTAATGTTTGAACCACATGATCCAGTGGATTCACTTTTCAATGGTGTTCCATCAGATCTTGAAAGTTCATCTGTTGAGGCCAATGGAGGCAAGGCGCAACAAGATGTTGCTTCCAGTAGCTCTGAACACGGGAAAATCAAGCCATCTAACGGAGAGTTAAATGAGGATTTCTGGGAGGACCTGCTGCACGAGGGTGGGCTCGATGAGGATACCAGGAACCCCGCTATAGATGATATGAACTTGCTGTCTCAAAAGATGGGCTACCTCAACTCAAGCAGCACCAAATCGCCACAGTAGTAGCTCTGGTCTGATCTTGCTGCAGCTCCAACGACCCTTGAGTACTTGTTAATCAAGCTTGTCATTATACTTATCCGCTTTGAGGATGATCAATTTGAGTAGGTCTCCTCCCCCATGGTGATGATCTTATGGTAGCATCAGCTGTACATAATAGGGCCGCAATAATTACCATCGTATTCTGTTCAAACCTTAAAGG]

[-] EMBL CB646210             [TCTCTTGGCTCATTCCTTGAGGTAGGGCACTTCGGATATGAGGGAGAGATTGATCAGTTGAAGAGGGACAAACATCTGTTGATGGCTGAAGTGGTGAAGCTGAGGCAGGAGCAGCAAAACACAAAGTCAGACCTGCAAGCTATGGAACAGAAGCTACAAGCTGTTCTCCCAGAGTGAGATGAGGAAGGAGCTTGAAGAGTTCGTCTCAAAGAAAAGAAGGCGCCGCATTGACCAGGGACCTGAACTTGATAGCATGGGTACCGGTTCTAGCCCCGAGCAAGTGTCACAGGTAATGTTTGAACCACATGATCCAGTGGATTCACTTTTCAATGGTGTTCCATCAGATCTTGAAAGTTCATCTGTTGAGGCCAATGGAGGCAAGGCGCAACAAGATGTTGCTTCCAGTAGCTCTGAACACGGGAAAATCAAGCCATCTAACGGAGAGTTAAATGAGGATTTCTGGGAGGACCTGCTGCACGAGGGTGGGCTCGATGAGGATACCAGGAACCCCGCTATAGATGATATGAACTTGCTGTCTCAAAAGATGGGCTACCTCAACTCAAGCAGCACCAAATCGCCACAGTAGTAGCTCTGGTCTGATCTTGCTGCAGCTCCAACGACCCTTGAGTACTTGTTAATCAAGCTTGTCATTATACTTATCCGCTTTGAGGATGATCAATTTGAGTAGGTCTCCTCCCCCATGGTGATGATCTTATGGTAGCATCAGCTGTACATAATAGGGCCGCAATAATTACCATCGTATTCTGTTCAAACCTTAAAGG]


>consensus_12788#1 TCTCTTGGCTCATTCCTTGAGGTAGGGCACTTCGGATATGAGGGAGAGATTGATCAGTTG AAGAGGGACAAACATCTGTTGATGGCTGAAGTGGTGAAGCTGAGGCAGGAGCAGCAAAAC ACAAAGTCAGACCTGCAAGCTATGGAACAGAAGCTACAAGCTGTTCTCCCAGAGTGAGAT GAGGAAGGAGCTTGAAGAGTTCGTCTCAAAGAAAAGAAGGCGCCGCATTGACCAGGGACC TGAACTTGATAGCATGGGTACCGGTTCTAGCCCCGAGCAAGTGTCACAGGTAATGTTTGA ACCACATGATCCAGTGGATTCACTTTTCAATGGTGTTCCATCAGATCTTGAAAGTTCATC TGTTGAGGCCAATGGAGGCAAGGCGCAACAAGATGTTGCTTCCAGTAGCTCTGAACACGG GAAAATCAAGCCATCTAACGGAGAGTTAAATGAGGATTTCTGGGAGGACCTGCTGCACGA GGGTGGGCTCGATGAGGATACCAGGAACCCCGCTATAGATGATATGAACTTGCTGTCTCA AAAGATGGGCTACCTCAACTCAAGCAGCACCAAATCGCCACAGTAGTAGCTCTGGTCTGA TCTTGCTGCAGCTCCAACGACCCTTGAGTACTTGTTAATCAAGCTTGTCATTATACTTAT CCGCTTTGAGGATGATCAATTTGAGTAGGTCTCCTCCCCCATGGTGATGATCTTATGGTA GCATCAGCTGTACATAATAGGGCCGCAATAATTACCATCGTATTCTGTTCAAACCTTAAA GG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12788#0      TGCTTCCAGAAGCGAGCGAGCTCTCCTTTCCTTTCTCCTACGCCTAGGCTTCTAGAAGCT 60
consensus_12788#1      ------------------------------------------------------------
                                                                                   

consensus_12788#0      TCCTTTCCAAATAGGGGCTAATCTCCTGAGCTCGAAGCTCTCCTCGTCAGCTTCAGGTGG 120
consensus_12788#1      ------------------------------------------------------------
                                                                                   

consensus_12788#0      TCGGGTGCTGCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTCCTCAAATCTCCCCGAGAGT 180
consensus_12788#1      ------------------------------------------------------------
                                                                                   

consensus_12788#0      TCGTGCTTTGCCGCGAGCAGCGAGCTGCGATCTCGCCTGAATCCTTCGTCGGCGGGGGGG 240
consensus_12788#1      ------------------------------------------------------------
                                                                                   

consensus_12788#0      ATGAATTGATCACGCGGTGTGCGCTTTCTGATTCTGTCGGGTTCCTTTCAGATGCACGAG 300
consensus_12788#1      ------------------------------------------------------------
                                                                                   

consensus_12788#0      CACGTCGGTGTCCGCCTCCTCTTTGCTTGATTTGCTTCCGCTGCTGCTGTTAGGTGCGCG 360
consensus_12788#1      ------------------------------------------------------------
                                                                                   

consensus_12788#0      AGAGCTCGTGATGGGGTGAAGCGTGTGTTCACAGGATTAGATTGCGCTCGCCTGATTCGC 420
consensus_12788#1      ------------------------------------------------------------
                                                                                   

consensus_12788#0      TGCATCTTGTTCTTCTTGCTGCCGCCTACGCGACTTGATTTCGTCACGCCAAAGCCGTGA 480
consensus_12788#1      ------------------------------------------------------------
                                                                                   

consensus_12788#0      CAGGCTGATTGCTACCTTGCTTGGCGATCTGTGCTTTAAATTCCACCATTGTTTGCTGGT 540
consensus_12788#1      ------------------------------------------------------------
                                                                                   

consensus_12788#0      GCTGGATGAGCAAATTCTTGGTTCGTGTGGCTCTAGTTGGTAGTTCTTGATTGAGGTGAG 600
consensus_12788#1      ------------------------------------------------------------
                                                                                   

consensus_12788#0      GTTCTGAGCTGCCATGAACTACCGAGTGGTGAACCCGGTGAAGGTGGAGAGCGGGCCGTC 660
consensus_12788#1      ------------------------------------------------------------
                                                                                   

consensus_12788#0      GACGGGCGTGGCGAATGGCCAGCCGCCGAGGCCGATGGACGGGCTCGCCGACGGCGGCCC 720
consensus_12788#1      ------------------------------------------------------------
                                                                                   

consensus_12788#0      ACCGCCGTTCCTCACCAAGACGTACGACATGGTGGATGACCCGACCACGGACGCCGTCGT 780
consensus_12788#1      ------------------------------------------------------------
                                                                                   

consensus_12788#0      GTCGTGGAGCGCCACCAACAACAGCTTCGTGGTGTGGGATCCTCACCTCTTTGGGAACGT 840
consensus_12788#1      ------------------------------------------------------------
                                                                                   

consensus_12788#0      GCTGCTGCCGAGGTACTTCAAGCACAACAACTTCTCCAGCTTCGTCCGGCAGCTCAATAC 900
consensus_12788#1      ------------------------------------------------------------
                                                                                   

consensus_12788#0      CTATGGCTTCAGGAAGGTGGATCCTGACAAGTGGGAATTTGCAAATGAGGGTTTTCTGAG 960
consensus_12788#1      ------------------------------------------------------------
                                                                                   

consensus_12788#0      AGGACAGAAGCATCTCCTTAAAGGCATAAAGCGTCGGAAACCTCCGAATTCATCTCCAAG 1020
consensus_12788#1      ------------------------------------------------------------
                                                                                   

consensus_12788#0      TCAGCAATCTCTTGGCTCATTCCTTGAGGTAGGGCACTTCGGATATGAGGGAGAGATTGA 1080
consensus_12788#1      -------TCTCTTGGCTCATTCCTTGAGGTAGGGCACTTCGGATATGAGGGAGAGATTGA 53
                              *****************************************************

consensus_12788#0      TCAGTTGAAGAGGGACAAACATCTGTTGATGGCTGAAGTGGTGAAGCTGAGGCAGGAGCA 1140
consensus_12788#1      TCAGTTGAAGAGGGACAAACATCTGTTGATGGCTGAAGTGGTGAAGCTGAGGCAGGAGCA 113
                       ************************************************************

consensus_12788#0      GCAAAACACAAAGTCAGACCTGCAAGCTATGGAACAGAAGCTACAAGGTACTGAGCAAAA 1200
consensus_12788#1      GCAAAACACAAAGTCAGACCTGCAAGCTATGGAACAGAAGCTACAAG------------- 160
                       ***********************************************             

consensus_12788#0      GCAACAGCACATGATGGCATTCTTGTCACGAGTTATGCATAATCCTGAGTTCATACGCCA 1260
consensus_12788#1      ------------------------------------------------------------
                                                                                   

consensus_12788#0      GCTGTTCTCCCAGAGTGAGATGAGGAAGGAGCTTGAAGAGTTCGTCTCAAAGAAAAGAAG 1320
consensus_12788#1      -CTGTTCTCCCAGAGTGAGATGAGGAAGGAGCTTGAAGAGTTCGTCTCAAAGAAAAGAAG 219
                        ***********************************************************

consensus_12788#0      GCGCCGCATTGACCAGGGACCTGAACTTGATAGCATGGGTACCGGTTCTAGCCCCGAGCA 1380
consensus_12788#1      GCGCCGCATTGACCAGGGACCTGAACTTGATAGCATGGGTACCGGTTCTAGCCCCGAGCA 279
                       ************************************************************

consensus_12788#0      AGTGTCACAGGTAATGTTTGAACCACATGATCCAGTGGATTCACTTTTCAATGGTGTTCC 1440
consensus_12788#1      AGTGTCACAGGTAATGTTTGAACCACATGATCCAGTGGATTCACTTTTCAATGGTGTTCC 339
                       ************************************************************

consensus_12788#0      ATCAGATCTTGAAAGTTCATCTGTTGAGGCCAATGGAGGCAAGGCGCAACAAGATGTTGC 1500
consensus_12788#1      ATCAGATCTTGAAAGTTCATCTGTTGAGGCCAATGGAGGCAAGGCGCAACAAGATGTTGC 399
                       ************************************************************

consensus_12788#0      TTCCAGTAGCTCTGAACACGGGAAAATCAAGCCATCTAACGGAGAGTTAAATGAGGATTT 1560
consensus_12788#1      TTCCAGTAGCTCTGAACACGGGAAAATCAAGCCATCTAACGGAGAGTTAAATGAGGATTT 459
                       ************************************************************

consensus_12788#0      CTGGGAGGACCTGCTGCACGAGGGTGGGCTCGATGAGGATACCAGGAACCCCGCTATAGA 1620
consensus_12788#1      CTGGGAGGACCTGCTGCACGAGGGTGGGCTCGATGAGGATACCAGGAACCCCGCTATAGA 519
                       ************************************************************

consensus_12788#0      TGATATGAACTTGCTGTCTCAAAAGATGGGCTACCTCAACTCAAGCAGCACCAAATCGCC 1680
consensus_12788#1      TGATATGAACTTGCTGTCTCAAAAGATGGGCTACCTCAACTCAAGCAGCACCAAATCGCC 579
                       ************************************************************

consensus_12788#0      ACAGTAGTAGCTCTGGTCTGATCTTGCTGCAGCTCCAACGACCCTTGAGTACTTGTTAAT 1740
consensus_12788#1      ACAGTAGTAGCTCTGGTCTGATCTTGCTGCAGCTCCAACGACCCTTGAGTACTTGTTAAT 639
                       ************************************************************

consensus_12788#0      CAAGCTTGTCATTATACTTATCCGCTTTGAGGATGATCAATTTGAGTAGGTCTCCTCCCC 1800
consensus_12788#1      CAAGCTTGTCATTATACTTATCCGCTTTGAGGATGATCAATTTGAGTAGGTCTCCTCCCC 699
                       ************************************************************

consensus_12788#0      CATGGTGATGATCTTATGGTAGCATCAGCTGTACATACTATTGCCGCAATAATTACCATC 1860
consensus_12788#1      CATGGTGATGATCTTATGGTAGCATCAGCTGTACATAATAGGGCCGCAATAATTACCATC 759
                       ************************************* **  ******************

consensus_12788#0      GTATTCTGTTCAG-CTTTGTGGAATTAGTTTTGGATCTGAATGTATGGTACTTTGACAGT 1919
consensus_12788#1      GTATTCTGTTCAAACCTTAAAGG------------------------------------- 782
                       ************  * **   *                                      

consensus_12788#0      GGACTTGAGGGTGCTGTATGTACATATAACAGTCTAACTAAATGCAGTTGTGCGTTGTAA 1979
consensus_12788#1      ------------------------------------------------------------
                                                                                   

consensus_12788#0      TGATGTATAGTTTTGCTTCAAAAAAAAAA 2008
consensus_12788#1      -----------------------------
                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)