These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12792#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2142 fasta sequence [CCTCCCCTTCCTTCTCCTCACTTTTCGCGGCAACCTCAGTGAAGTCAGCGAGGTGATAGCGCCAGCAAAACCCTGAACCCCTCCAACCACCGCAGCCGCAATTCCGCCGCCGCCGCAGCCACGTTGGCCGGCGGCCTACTGGGGGTGCTGGAGGCGCGATTGATGAGCCCTGCAGCCGACGCCGCGGGCAGCGATGCACAGGCTCGTACCCCGCGCCGCCGCCTCCTTCCTCGGCGCCCCGCCGCTGCTCACCACCCAGGCGGGCCCGCTTCTCGCCGCGCGTTCGGGCCCACCAAACCCTAGCCGCCTCCGCCTCCGCCTCTCCCCGTGGCGGCTGCTGCGCTCGAGGAGGGGGCTCTCCTGCTCCGCCGATGCGGCGAAGAGGTGCGGGGATGATGATGCCGAGGAGGATGGCGAGCAGAGCGTCGCCGGGGGAGGTGGGAGCCGTCCGGTGGTGGATAGGAGGCAGAGAAGTCGGGGCGATGCGGCGATGGGGAGCGGCGAGCTGCTCGCGATTCCTGGAGTCGGGCCGCGCAACCTGAGGAAGCTCGTGGACAAGGGATTCGATGGCGTGGCACAGCTCAAGCAGCTGTACAGGGATAAGTTCTTTGGCAAATCCCATGAGAAAATGGTTGAGTTCTTGCAAAGTTCTGTTGGCATCATACACAAGAATCATGCTGAGAGTATAACTTTGTTCATTAAAGAAAGTGTTGATGAAGAGCTGAAAGGAACTGACTCACCAAATGTTTCCAAAAATAAGAGGCTGACCTTTTGTGTGGAAGGGAACATCAGTGTCGGAAAAACTACATTCCTTCAAAGAATTGCCAATGAGACCATCGAATTACGTGACCTTGTAGAGATAGTGCCTGAACCTATTGCTAAATGGCAAGATGTTGGCCCTGATCACTTCAACATACTTGATGCTTTCTATGCTGAGCCACAGAGGTATGCTTACACTTTCCAGAATTATGTGTTTGTTACAAGGGTCATGCAAGAGAAGGAATCTTCAAGTGGCATAAAGCCTCTCAGGTTGATGGAAAGAAGTGTTTTCAGTGATAGAATGGTTTTTGTTCGTGCTGTCCATGAAGCCAACTGGATGAACGAGATGGAGATCAGCATCTATGACTCCTGGTTTGACCCAGTGGTGTCATCACTCCCAGGACTTATTCCAGATGGTTTTATTTATCTAAGAGCTAGTCCCGACACTTGCCACAAAAGAATGATGGTTCGGAAAAGATCTGAAGAGGGTGGTGTTACTCTTGATTACCTTCGAGGTTTGCATGAGAAACATGAGAGCTGGCTGCTTCCTTCCAAAGGACAAGGTCCTGGTGTATTATCGGTCAGTCAAGTTCCAGTCCATATGGAGGGCTCTTTGCCTCCGGATATAAGAGAACGAGTATTCTACTTAGAAGGAGATCATATGCATTCTAGTATCCAGAAGGTTCCTGCTCTGGTCCTCGACTGCGAACATGACATTGATTTTAACAAGGATATTGAAGCCAAACGACAGTAAGTTTTGCAAAACCTTTATTTTGTCCATAGGACAATTGTCAACCTTATATTATTTTCTTCTAGTGCTAGCCTGTATTTATTTCATAAGAAAAGAACATCTAAGAACATCTAGTGCTAGCCTGTATTTATTTACTAGTTCATTCTTCTTAACAAACACAAACATTATATTTATTCCAAAATTGAACTCAACCCTGTTCGTATAGTGGCTGCGTTCTAGTCACACGGTAGGTCTACCTTGATCTTTATTCATAGTGGTCAAGATTTCAAAGTTCAACTTTACAACTGTTGAAATGCTAGAAAGACTATAGGAGCACAAAAAAGAAATGCTTTTCTTGTATGTGGCTTCAAGTTAAGAGGGATCAGAGTACAACTATTATCCTATAGCTCATGCATCATTCTTCCTTTGTGTATGGCATACATGTATTTTGTAGTACTTGGTATGAAGTTTCTTTCTGCTAGTTTAGTTGCATGACACTTCTTGCTTAAATTCCTTACATCGAATGTTTAGTACCAACTCAACTGCTAGCAACATATCCGTATATGACATGGTTTATGACATATTAGGAACTCAATTATTTTGTTTTTGCACTTTTCATTATAGTTCATTTATATGAAGAGTCTTGTGCTTAA] [+] EMBL CB619372 [CCTCCCCTTCCTTCTCCTCACTTTTCGCGGCAACCTCAGTGAAGTCAGCGAGGTGATAGCGCCAGCAAAACCCTGAACCCCTCCAACCACCGCAGCCGCAATTCCGCCGCCGCCGCAGCCACGTTGGCCGGCGGCCTACTGGGGGTGCTGGAGGCGCGATTGATGAGCCCTGCAGCCGACGCCGCGGGCAGCGATGCACAGGCTCGTACCCCGCGCCGCCGCCTCCTTCCTCGGCGCCCCGCCGCTGCTCACCACCCAGGCGGGCCCGCTTCTCGCCGCGCGTTCGGGCCCACCAAACCCTAGCCGCCTCCGCCTCCGCCTCTCCCCGTGGCGGCTGCTGCGCTCGAGGAGGGGGCTCTCCTGCTCCGCCGATGCGGCGAAGAGGTGCGGGGATGATGATGCCGAGGAGGATGGCGAGCAGAGCGTCGCCGGGGGAGGTGGGAGCCGTCCGGTGGTGGATAGGAGGCAGAGAAGTCGGGGCGATGCGGCGATGGGGAGCGGCGAGCTGCTCGCGATTCCTGGAGTCGGGCCGCGCAACCTGAGGAAGCTCGTGGACAAGGGATTCGATGGCGTGGCACAGCTCAAGCAGCTGTACAGGGATAAGTTCTTTGGCAAATCCCATGAGAAAATGGTTGAGTTCTTGCAAAGTTCTGTTGGCATCATACACAAGAATCA ] [+] EMBL AK101275 [ GCGAGGTGATAGCGCCAGCAAAACCCTGAACCCCTCCAACCACCGCAGCCGCAATTCCGCCGCCGCCGCAGCCACGTTGGCCGGCGGCCTACTGGGGGTGCTGGAGGCGCGATTGATGAGCCCTGCAGCCGACGCCGCGGGCAGCGATGCACAGGCTCGTACCCCGCGCCGCCGCCTCCTTCCTCGGCGCCCCGCCGCTGCTCACCACCCAGGCGGGCCCGCTTCTCGCCGCGCGTTCGGGCCCACCAAACCCTAGCCGCCTCCGCCTCCGCCTCTCCCCGTGGCGGCTGCTGCGCTCGAGGAGGGGGCTCTCCTGCTCCGCCGATGCGGCGAAGAGGTGCGGGGATGATGATGCCGAGGAGGATGGCGAGCAGAGCGTCGCCGGGGGAGGTGGGAGCCGTCCGGTGGTGGATAGGAGGCAGAGAAGTCGGGGCGATGCGGCGATGGGGAGCGGCGAGCTGCTCGCGATTCCTGGAGTCGGGCCGCGCAACCTGAGGAAGCTAGTGGACAAGGGATTCGATGGCGTGGCACAGCTCAAGCAGCTGTACAGGGATAAGTTC TTGGCAAGTCCAATGAGAAAATGGTTGAGTTCTTGCAAAGTTCTGTTGGCATCATACACAAGAATCATGCTGAGAGTATAACTTTGTTCATTAAAGAAAGTGTTGATGAAGAGCTGAAAGGAACTGACTCACCAAATGTTTCCAAAAATAAGAGGCTGACCTTTTGTGTGGAAGGGAACATCAGTGTCGGAAAAACTACATTCCTTCAAAGAATTGCCAATGAGACCATCGAATTACGTGACCTTGTAGAGATAGTGCCTGAACCTATTGCTAAATGGCAAGATGTTGGCCCTGATCACTTCAACATACTTGATGCTTTCTATGCTGAGCCACAGAGGTATGCTTACACTTTCCAGAATTATGTGTTTGTTACAAGGGTCATGCAAGAGAAGGAATCTTCAAGTGGCATAAAGCCTCTCAGGTTGATGGAAAGAAGTGTTTTCAGTGATAGAATGGTTTTTGTTCGTGCTGTCCATGAAGCCAACTGGATGAACGAGATGGAGATCAGCATCTATGACTCCTGGTTTGACCCAGTGGTGTCATCACTCCCAGGACTTATTCCAGATGGTTTTATTTATCTAAGAGCTAGTCCCGACACTTGCCACAAAAGAATGATGGTTCGGAAAAGATCTGAAGAGGGTGGTGTTACTCTTGATTACCTTCGAGGTTTGCATGAGAAACATGAGAGCTGGCTGCTTCCTTCCAAAGGACAAGGTCCTGGTGTATTATCGGTCAGTCAAGTTCCAGTCCATATGGAGGGCTCTTTGCCTCCGGATATAAGAGAACGAGTATTCTACTTAGAAGGAGATCATATGCATTCTAGTATCCAGAAGGTTCCTGCTCTGGTCCTCGACTGCGAACATGACATTGATTTTAACAAGGATATTGAAGCCAAACGACAGTAAGTTTTGCAAAACCTTTATTTTGTCCATAGGACAATTGTCAACCTTATATTATTTTCTTCTAGTGCTAGCCTGTATTTATTTCATAAGAAAAGAACATCTAAGAACATCTAGTGCTAGCCTGTATTTATTTACTAGTTCATTCTTCTTAACAAACACAAACATTATATTTATTCCAAAATTGAACTCAACCCTGTTCGTATAGTGGCTGCGTTCTAGTCACACGGTAGGTCTACCTTGATCTTTATTCATAGTGGTCAAGATTTCAAAGTTCAACTTTACAACTGTTGAAATGCTAGAAAGACTATAGGAGCACAAAAAAGAAATGCTTTTCTTGTATGTGGCTTCAAGTTAAGAGGGATCAGAGTACAACTATTATCCTATAGCTCATGCATCATTCTTCCTTTGTGTATGGCATACATGTATTTTGTAGTACTTGGTATGAAGTTTCTTTCTGCTAGTTTAGTTGCATGACACTTCTTGCTTAAATTCCTTACATCGAATGTTTAGTACCAACTCAACTGCTAGCAACATATCCGTATATGACATGGTTTATGACATATTAGGAACTCAATTATTTTGTTTTTGCACTTTTCATTATAGTTCATTTATATGAAGAGTCTTGTGCTTAA] consensusID : consensus_12792#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1789 fasta sequence [CCTTCCTCCCCTTCCTTCTCCTCACTTTTCGCGGCAACCTCAGTGAAGTCAGCGAGGTGATA-GCGCCAGCAAAACCCTGAACCCCTCCAACCACCGCAGCCGCAATTCCGCCGCCGCCGCAGCCACGTTGGCCGGCGGCCTACTGGGGGTGCTGGAGGCGCGATTGATGAGCCCTGCAGCCGACGCCGCGGGCAGCGATGCACAGGCTCGTACCCCGCGCCGCCGCCTCCTTCCTCGGCGCCCCGCCGCTGCTCACCACCCAGGCGGGCCCGCTTCTCGCCGCGCGTTCGGGCCCACCAAACCCTAGCCGCCTCCGCCTCCGCCTCTCCCCGTGGCGGCTGCTGCGCTCGAGGAGGGGGCTCTCCTGCTCCGCCGATGCGGCGAAGAGGTGCGGGGATGATGATGCCGAGGAGGATGGCGAGCAGAGCGTCGCCGGGGGAGGTGGGAGCCGTCCGGTGGTGGATAGGAGGCAGAGAAGTCGGGGCGATGCGGCGATGGGGAGCGGCGAGCTGCTCGCGATTCCTGGAGTCGGGCCGCGCAACCTGAGGAAGCTCGTGGACAAGGGATTCGATGGCGTGGCACAGCTCAAGCAGCTGTACAGGGATAAGTTCTTTGGCAAGTCCAATGAGAAAATGGTTGAGTTCTTGCAAAGTTCTGTTGGCATCATACACAAGAATCATGCTGAGAGTATAACTTTGTTCATTAAAGAAAGTGTTGGTGAAGAGCTGAAAGGAACTGACTCACCAAATGTTTCCAAAAATAAGAGGCTGACCTTTTGTGTGGAAGGGAACATCAGTGTCGGAAAAACTACATTCCTTCAAAGAATTGCCAATGAGACCATCGAATTACGTGACCTTGTAGAGATAGTGCCTGAACCTATTGCTAAATGGCAAGATGTTGGCCCTGATCACTTCAACATACTTGATGCTTTCTATGCTGAGCCACAGAGGTATGCATACACTTTCCAGAATTATGTGTTTGTAAATCTAAGAGCTAGTCCCGACACTTGCCACAAAAGAATGATGGTTCGGAAAAGATCTGAAGAGGGTGGTGTTACTCTTGATTACCTTCGAGGTTTGCATGAGAAACATGAGAGCTGGCTGCTTCCTTCCAAAGGACAAGGTCCTGGTGTATTATCGGTCAGTCAAGTTCCAGTCCATATGGAGGGCTCTTTGCCTCCGGATATAAGAGAACGAGTATTCTACTTAGAAGGAGATCATATGCATTCTAGTATCCAGAAGGTTCCTGCTCTGGTCCTCGACTGCGAACATGACATTGATTTTAACAAGGATATTGAAGCCAAACGACAATATGCCCGACAAGTTGCGGAGTTCTTTGAATTTGTAAAGAAAAAGAAAGAAGATCCTTCTGCGGAGTCAAGTGGTGGTGATAAGAGTACCAACAAACAGATTATGCTTCCCCACAGAGGTGGTTTGTGGGTTCCCGAAGGTAACCCTTTACCAGGATCTGCTCTGAACTCTCTGGATTTCAGAAGAGCAATGTCTTCCTTCCTCTCAGCTTAGGGGCCAACATCCCATATGAAATAGCCAATTCCTGGCCACCATATGTTCCAGTATTACAAATTCTGAATGGTCCATCGTCACATCTGCGTCTCAGATAGCCTTGAACTGACGACCCTGTAAATGCTGAAGATTTATTGAAATATAGGTTTCTGTATAGCGCTAGCCAATGCTGTACAATAGTAGTATCAAACTCGTCCATGTAAATGTTCACTCTTCTTCGTCGTCAATAAAAGGCGTCCCTGTAAATGATTAAAAAAAAAAAAAAA] [+] EMBL AK105804 [CCTTCCTCCCCTTCCTTCTCCTCACTTTTCGCGGCAACCTCAGTGAAGTCAGCGAGGTGATA GCGCCAGCAAAACCCTGAACCCCTCCAACCACCGCAGCCGCAATTCCGCCGCCGCCGCAGCCACGTTGGCCGGCGGCCTACTGGGGGTGCTGGAGGCGCGATTGATGAGCCCTGCAGCCGACGCCGCGGGCAGCGATGCACAGGCTCGTACCCCGCGCCGCCGCCTCCTTCCTCGGCGCCCCGCCGCTGCTCACCACCCAGGCGGGCCCGCTTCTCGCCGCGCGTTCGGGCCCACCAAACCCTAGCCGCCTCCGCCTCCGCCTCTCCCCGTGGCGGCTGCTGCGCTCGAGGAGGGGGCTCTCCTGCTCCGCCGATGCGGCGAAGAGGTGCGGGGATGATGATGCCGAGGAGGATGGCGAGCAGAGCGTCGCCGGGGGAGGTGGGAGCCGTCCGGTGGTGGATAGGAGGCAGAGAAGTCGGGGCGATGCGGCGATGGGGAGCGGCGAGCTGCTCGCGATTCCTGGAGTCGGGCCGCGCAACCTGAGGAAGCTCGTGGACAAGGGATTCGATGGCGTGGCACAGCTCAAGCAGCTGTACAGGGATAAGTTCTTTGGCAAGTCCAATGAGAAAATGGTTGAGTTCTTGCAAAGTTCTGTTGGCATCATACACAAGAATCATGCTGAGAGTATAACTTTGTTCATTAAAGAAAGTGTTGGTGAAGAGCTGAAAGGAACTGACTCACCAAATGTTTCCAAAAATAAGAGGCTGACCTTTTGTGTGGAAGGGAACATCAGTGTCGGAAAAACTACATTCCTTCAAAGAATTGCCAATGAGACCATCGAATTACGTGACCTTGTAGAGATAGTGCCTGAACCTATTGCTAAATGGCAAGATGTTGGCCCTGATCACTTCAACATACTTGATGCTTTCTATGCTGAGCCACAGAGGTATGCATACACTTTCCAGAATTATGTGTTTGTAAATCTAAGAGCTAGTCCCGACACTTGCCACAAAAGAATGATGGTTCGGAAAAGATCTGAAGAGGGTGGTGTTACTCTTGATTACCTTCGAGGTTTGCATGAGAAACATGAGAGCTGGCTGCTTCCTTCCAAAGGACAAGGTCCTGGTGTATTATCGGTCAGTCAAGTTCCAGTCCATATGGAGGGCTCTTTGCCTCCGGATATAAGAGAACGAGTATTCTACTTAGAAGGAGATCATATGCATTCTAGTATCCAGAAGGTTCCTGCTCTGGTCCTCGACTGCGAACATGACATTGATTTTAACAAGGATATTGAAGCCAAACGACAATATGCCCGACAAGTTGCGGAGTTCTTTGAATTTGTAAAGAAAAAGAAAGAAGATCCTTCTGCGGAGTCAAGTGGTGGTGATAAGAGTACCAACAAACAGATTATGCTTCCCCACAGAGGTGGTTTGTGGGTTCCCGAAGGTAACCCTTTACCAGGATCTGCTCTGAACTCTCTGGATTTCAGAAGAGCAATGTCTTCCTTCCTCTCAGCTTAGGGGCCAACATCCCATATGAAATAGCCAATTCCTGGCCACCATATGTTCCAGTATTACAAATTCTGAATGGTCCATCGTCACATCTGCGTCTCAGATAGCCTTGAACTGACGACCCTGTAAATGCTGAAGATTTATTGAAATATAGGTTTCTGTATAGCGCTAGCCAATGCTGTACAATAGTAGTATCAAACTCGTCCATGTAAATGTTCACTCTTCTTCGTCGTCAATAAAAGGCGTCCCT ] [+] EMBL CB640915 [ ACTTTTCGCGGCAACCTCAGTGAAGTCAGCGAGGTGATA GCGCCAGCAAAACCCTGAACCCCTCCAACCACCGCAGCCGCAATTCCGCCGCCGCCGCAGCCACGTTGGCCGGCGGCCTACTGGGGGTGCTGGAGGCGCGATTGATGAGCCCTGCAGCCGACGCCGCGGGCAGCGATGCACAGGCTCGTACCCCGCGCCGCCGCCTCCTTCCTCGGCGCCCCGCCGCTGCTCACCACCCAGGCGGGCCCGCTTCTCGCCGCGCGTTCGGGCCCACCAAACCCTAGCCGCCTCCGCCTCCGCCTCTCCCCGTGGCGGCTGCTGCGCTCGAGGAGGGGGCTCTCCTGCTCCGCCGATGCGGCGAAGAGGTGCGGGGATGATGATGCCGAGGAGGATGGCGAGCANAGCGTCGCCGGGGGAGGTGGGAGCCGTCCGGTGGTGGATAGGAGGCANAGAAGTCGGGGCGATGCGGCGATGGGGAGCGGCGAGCTGCTCGCGATTCCTGGAGTCCGGCC ] [+] EMBL CB638849 [ ACTTTCCCCGGCCACCTCCGTGAAGTCAGCGAGGTGATACGCGCCAGCAAAACCCTGAACCCCTCCAACCACCGCAGCCGCAATTCCGCCGCCGCCGCAGCCACGTTGGCCGGCGGCCTACTGGGGGTGCTGGAGGCGCGATTGATGAGCCCTGCAGCCGACGCCGCGGGCAGCGATGCACAAGCTCGTACCCCGCGCCGCCGCCTCCTTCCTCGGCGCCCCGCCGCTGCTCACCACCCAGGCGGGCCCGCTTCTCGCCGCGCGTTCGGGCCCACCAAACCCTAGCCGCCTCCGCCTCCGCCTCTCCCCGTGGCGGCTGCTGCGCTCGAGGAGGGGGCTCTCCTGCTCCGCCGATGCGGCGAAGAGGTGCGGGGATGATGATGCCCACGA ] [+] EMBL CB640903 [ AGTGAAGTCAGCGAGGTGATA GCGCCAGCAAAACCCTGAACCCCTCCAACCACCGCAGCCGCAATTCCGCCGCCGCCGCAGCCACGTTGGCCGGCGGCCTACTGGGGGTGCTGGAGGCGCGATTGATGAGCCCTGCAGCCGAC ] [-] EMBL CB659398 [ TTCGGAAAAGATCTGAAGAGGGTGGTGTTACTCTTGATTACCTTCGAGGTTTGCATGAGAAACATGAGAGCTGGCTGCTTCCTTCCAAAGGACAAGGTCCTGGTGTATTATCGGTCAGTCAAGTTCCAGTCCATATGGAGGGCTCTTTGCCTCCGGATATAAGAGAACGAGTATTCTACTTAGAAGGAGATCATATGCATTCTAGTATCCAGAAGGTTCCTGCTCTGGTCCTCGACTGCGAACATGACATTGATTTTAACAAGGATATTGAAGCCAAACGACAATATGCCCGACAAGTTGCGGAGTTCTTTGAATTTGTAAAGAAAAAGAAAGAAGATCCTTCTGCGGAGTCAAGTGGTGGTGATAAGAGTACCAACAAACAGATTATGCTTCCCCACAGAGGTGGTTTGTGGGTTCCCGAAGGTAACCCTTTACCAGGATCTGCTCTGAACTCTCTGGATTTCAGAAGAGCAATGTCTTCCTTCCTCTCAGCTTAGGGGCCAACATCCCATATGAAATAGCCAATTCCTGGCCACCATATGTTCCAGTATTACAAATTCTGAATGGTCCATCGTCACATCTGCGTCTCAGATAGCCTTGAACTGACGACCCTGTAAATGCTGAAGATTTATTGAAATATAGGTTTCTGTATAGCGCTAGCCAATGCTGTACAATAGTAGTATCAAACTCGTCCATGTAAATGTTCACTCTTCTTCGTCGTCAATAAAAGGCGTCCCTGTAAATGAT ] [-] EMBL CA762944 [ TTCCAAAGGACAAGGTTCTGGTGTATTATCGGTCAGTCAAGTTCCAGTCCATATGGAGGGCTCTTTGCCTCCAGATATAAGAGAACGAGTATTCTACTTAGAAGGAGATCATATGCATTCTAGTATCCAGAAGGTTCCTGCTCTGGTCCTCGACTGCGAACATGACATTGATTTTAACAAGGATATTGAAGCCAAACGACAATATGCCCGACAAGTTGCGGAGTTCTTTGAATTTGTAAAGAAAAAGAAAGAAGATCCTTCTGCGGAGTCAAGTGGTGGTGATAAGAGTACCAACAAACAGATTATGCTTCCCCACAGAGGTGGTTTGTGGGTTCCCGAAGGTAACCCTTTACCAGGATCTGCTCTGAACTCTCTGGATTTCAGAAGAGCAATGTCTTCCTCCCTCTCAGCTTAGGGGCCAACATCCCATATGAAATAGCCAATTCCTGGCCACCATATGTTCCAGTATTACAAATTCTGAATGGTCCATCGTCACATTTGCGTCTCAGATAGCCTTGAACTGACGACCCTGTAAATGCTGAAGATTTATTGAAATATAGGTTTCTGTATAGCGCTAGCCAATGCTGTACAATAGTAGTATCAAACTCGTCCATGTAAATGTTCACTCTTTTTCGTCGTCAATAAAAGGCGTCCCTGTAAATGATTAAAAAAAAAAAAAAA] [-] EMBL CB619373 [ AAGGTTTTGGTGTATTATCGGTCAGTCAAGTTCCAGTCCATATGGAGGGCTCTTTGCCTCCGGATATAAGAGAACGAGTATTCTACTTAGAAGGAGATCATATGCATTCTAGTATCCAGAAGGTTCCTGCTCTGGTCCTCGACTGCGAACATGACATTGATTTTAACAAGGATATTGAAGCCAAACGACAATATGCCCGACAAGTTGCGGAGTTCTTTGAATTTGTAAAGAAAAAGAAAGAAGATCCTTCTGCGGAGTCAAGTGGTGGTGATAAGAGTACCAACAAACAGATTATGCTTCCCCACAGAGGTGGTTTGTGGGTTCCCGAAGGTAACCCTTTACCAGGATCTGCTCTGAACTCTCTGGATTTCAGAAGAGCAATGTCTTCCTTCCTCTCAGCTTAGGGGCCAACATCCCATATGAAATAGCCAATTCCTGGCCACCATATGTTCCAGTATTACAAATTCTGAATGGTCCATCGTCATATCTGCGTCTCAGATAGCCTTGAACTGACGACCCTGTAAATGCTGAAGATTTATTGAAATATAGGTTTCTGTATAGCGCTAGCCAATGCTGTACAATAGTAGTATCAAACTCGTCCATGTAAATGTTCACTCTTCTTGGTCGTCAATAAAAGGCGTCCCTGTAAATGATTAAAAAAAAga ] [-] EMBL CB638850 [ CATTGATTTTAACAAGGATATTGAAGCCAAACGACAATATGCCCGACAAGTTGCGGAGTTCTTTGAATTTGTAAAGAAAAAGAAAGAAGATCCTTCTGCGGAGTCAAGTGGTGGTGATAAGAGTACCAACAAACAGATTATGCTTCCCCACAGAGGTGGTTTGTGGGTTCCCGAAGGTAACCCTTTACCAGGATCTGCTCTGAACTCTCTGGATTTCAGAAGAGCAATGTCTTCCTTCCTCTCAGCTTAGGGGCCAACATCCCATATGAAATAGCCAATTCCTGGCCACCATATGTTCCAGTATTACAAATTCTGAATGGTCCATCGTCACATCTGCGTCTCAGATAGCCTTGAACTGACGACCCTGTAAATGCTGAAGATTTATTGAAATATAGGTTTCTGTATAGCGCTAGCCAATGCTGTACAATAGTAGTATCAAACTCGTCCATGTAAATGTTCACTCTTCTTCGTCGTCAATAAAAGGCGTCCCTGTAAATGATTAtttggct ] consensusID : consensus_12792#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence [AGCTGCTCGCGATTCCTGGAGTCGGGCCGCGCAACCTGAGGAAGCTCGTGGACAGGGATAAGTTCTTTGGCAAGTCCAATGAGAAAATGGTTGAGTTCTTGCAAAGTTCTGTTGGCATCATACACAAGAATCATGCTGAGAGTATAACTTTGTTCATTAAAGAAAGTGTTGATGAAGAGCTGAAAGGAACTGACTCACCAAATGTTTCCAAAAATAAGAGGCTGACCTTTTGTGTGGAAGGGAACATCAGTGTCTGAAAAACTACATTCCTTCAAAGAATTGCCAATGAGACCATCGAATTACGTGACCTTGTACAGATAGTGCCTGAACCTATTGCTAAATGGCAAGATGTTGGCCCTGATCACTTCAACATACTTGATGCTTTCTATGCTGAGCCACAGAGGTATGCATACACTTTCCAGAATTATGTGTTTGTTACAAGGGTCATGCAAGAGAAGGAATCTTCAAGTGGCATAAAGCCTCTCATGTTGATGGAAAGAAGTGTTTTCAGTGATAGAATGGTTTTTGTTCGTGCTGTCCATGAAGCCAACTGGATGAACGAGATGGAGATCAGCATCTATGACTCCTGGTTTGACCCATTGGTGTCATCACTCCCAGGACTTATTCCAGATGGT] [+] EMBL CB682504 [AGCTGCTCGCGATTCCTGGAGTCGGGCCGCGCAACCTGAGGAAGCTCGTGGACAGGGATAAGTTCTTTGGCAAGTCCAATGAGAAAATGGTTGAGTTCTTGCAAAGTTCTGTTGGCATCATACACAAGAATCATGCTGAGAGTATAACTTTGTTCATTAAAGAAAGTGTTGATGAAGAGCTGAAAGGAACTGACTCACCAAATGTTTCCAAAAATAAGAGGCTGACCTTTTGTGTGGAAGGGAACATCAGTGTCTGAAAAACTACATTCCTTCAAAGAATTGCCAATGAGACCATCGAATTACGTGACCTTGTACAGATAGTGCCTGAACCTATTGCTAAATGGCAAGATGTTGGCCCTGATCACTTCAACATACTTGATGCTTTCTATGCTGAGCCACAGAGGTATGCATACACTTTCCAGAATTATGTGTTTGTTACAAGGGTCATGCAAGAGAAGGAATCTTCAAGTGGCATAAAGCCTCTCATGTTGATGGAAAGAAGTGTTTTCAGTGATAGAATGGTTTTTGTTCGTGCTGTCCATGAAGCCAACTGGATGAACGAGATGGAGATCAGCATCTATGACTCCTGGTTTGACCCATTGGTGTCATCACTCCCAGGACTTATTCCAGATGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12792#0 ----CCTCCCCTTCCTTCTCCTCACTTTTCGCGGCAACCTCAGTGAAGTCAGCGAGGTGA 56 consensus_12792#2 ------------------------------------------------------------ consensus_12792#1 CCTTCCTCCCCTTCCTTCTCCTCACTTTTCGCGGCAACCTCAGTGAAGTCAGCGAGGTGA 60 consensus_12792#0 TAGCGCCAGCAAAACCCTGAACCCCTCCAACCACCGCAGCCGCAATTCCGCCGCCGCCGC 116 consensus_12792#2 ------------------------------------------------------------ consensus_12792#1 TAGCGCCAGCAAAACCCTGAACCCCTCCAACCACCGCAGCCGCAATTCCGCCGCCGCCGC 120 consensus_12792#0 AGCCACGTTGGCCGGCGGCCTACTGGGGGTGCTGGAGGCGCGATTGATGAGCCCTGCAGC 176 consensus_12792#2 ------------------------------------------------------------ consensus_12792#1 AGCCACGTTGGCCGGCGGCCTACTGGGGGTGCTGGAGGCGCGATTGATGAGCCCTGCAGC 180 consensus_12792#0 CGACGCCGCGGGCAGCGATGCACAGGCTCGTACCCCGCGCCGCCGCCTCCTTCCTCGGCG 236 consensus_12792#2 ------------------------------------------------------------ consensus_12792#1 CGACGCCGCGGGCAGCGATGCACAGGCTCGTACCCCGCGCCGCCGCCTCCTTCCTCGGCG 240 consensus_12792#0 CCCCGCCGCTGCTCACCACCCAGGCGGGCCCGCTTCTCGCCGCGCGTTCGGGCCCACCAA 296 consensus_12792#2 ------------------------------------------------------------ consensus_12792#1 CCCCGCCGCTGCTCACCACCCAGGCGGGCCCGCTTCTCGCCGCGCGTTCGGGCCCACCAA 300 consensus_12792#0 ACCCTAGCCGCCTCCGCCTCCGCCTCTCCCCGTGGCGGCTGCTGCGCTCGAGGAGGGGGC 356 consensus_12792#2 ------------------------------------------------------------ consensus_12792#1 ACCCTAGCCGCCTCCGCCTCCGCCTCTCCCCGTGGCGGCTGCTGCGCTCGAGGAGGGGGC 360 consensus_12792#0 TCTCCTGCTCCGCCGATGCGGCGAAGAGGTGCGGGGATGATGATGCCGAGGAGGATGGCG 416 consensus_12792#2 ------------------------------------------------------------ consensus_12792#1 TCTCCTGCTCCGCCGATGCGGCGAAGAGGTGCGGGGATGATGATGCCGAGGAGGATGGCG 420 consensus_12792#0 AGCAGAGCGTCGCCGGGGGAGGTGGGAGCCGTCCGGTGGTGGATAGGAGGCAGAGAAGTC 476 consensus_12792#2 ------------------------------------------------------------ consensus_12792#1 AGCAGAGCGTCGCCGGGGGAGGTGGGAGCCGTCCGGTGGTGGATAGGAGGCAGAGAAGTC 480 consensus_12792#0 GGGGCGATGCGGCGATGGGGAGCGGCGAGCTGCTCGCGATTCCTGGAGTCGGGCCGCGCA 536 consensus_12792#2 ---------------------------AGCTGCTCGCGATTCCTGGAGTCGGGCCGCGCA 33 consensus_12792#1 GGGGCGATGCGGCGATGGGGAGCGGCGAGCTGCTCGCGATTCCTGGAGTCGGGCCGCGCA 540 ********************************* consensus_12792#0 ACCTGAGGAAGCTCGTGGACAAGGGATTCGATGGCGTGGCACAGCTCAAGCAGCTGTACA 596 consensus_12792#2 ACCTGAGGAAGCTCGTGGACA--------------------------------------- 54 consensus_12792#1 ACCTGAGGAAGCTCGTGGACAAGGGATTCGATGGCGTGGCACAGCTCAAGCAGCTGTACA 600 ********************* consensus_12792#0 GGGATAAGTTCTTTGGCAAATCCCATGAGAAAATGGTTGAGTTCTTGCAAAGTTCTGTTG 656 consensus_12792#2 GGGATAAGTTCTTTGGCAAGTCCAATGAGAAAATGGTTGAGTTCTTGCAAAGTTCTGTTG 114 consensus_12792#1 GGGATAAGTTCTTTGGCAAGTCCAATGAGAAAATGGTTGAGTTCTTGCAAAGTTCTGTTG 660 ******************* *** ************************************ consensus_12792#0 GCATCATACACAAGAATCATGCTGAGAGTATAACTTTGTTCATTAAAGAAAGTGTTGATG 716 consensus_12792#2 GCATCATACACAAGAATCATGCTGAGAGTATAACTTTGTTCATTAAAGAAAGTGTTGATG 174 consensus_12792#1 GCATCATACACAAGAATCATGCTGAGAGTATAACTTTGTTCATTAAAGAAAGTGTTGGTG 720 ********************************************************* ** consensus_12792#0 AAGAGCTGAAAGGAACTGACTCACCAAATGTTTCCAAAAATAAGAGGCTGACCTTTTGTG 776 consensus_12792#2 AAGAGCTGAAAGGAACTGACTCACCAAATGTTTCCAAAAATAAGAGGCTGACCTTTTGTG 234 consensus_12792#1 AAGAGCTGAAAGGAACTGACTCACCAAATGTTTCCAAAAATAAGAGGCTGACCTTTTGTG 780 ************************************************************ consensus_12792#0 TGGAAGGGAACATCAGTGTCGGAAAAACTACATTCCTTCAAAGAATTGCCAATGAGACCA 836 consensus_12792#2 TGGAAGGGAACATCAGTGTCTGAAAAACTACATTCCTTCAAAGAATTGCCAATGAGACCA 294 consensus_12792#1 TGGAAGGGAACATCAGTGTCGGAAAAACTACATTCCTTCAAAGAATTGCCAATGAGACCA 840 ******************** *************************************** consensus_12792#0 TCGAATTACGTGACCTTGTAGAGATAGTGCCTGAACCTATTGCTAAATGGCAAGATGTTG 896 consensus_12792#2 TCGAATTACGTGACCTTGTACAGATAGTGCCTGAACCTATTGCTAAATGGCAAGATGTTG 354 consensus_12792#1 TCGAATTACGTGACCTTGTAGAGATAGTGCCTGAACCTATTGCTAAATGGCAAGATGTTG 900 ******************** *************************************** consensus_12792#0 GCCCTGATCACTTCAACATACTTGATGCTTTCTATGCTGAGCCACAGAGGTATGCTTACA 956 consensus_12792#2 GCCCTGATCACTTCAACATACTTGATGCTTTCTATGCTGAGCCACAGAGGTATGCATACA 414 consensus_12792#1 GCCCTGATCACTTCAACATACTTGATGCTTTCTATGCTGAGCCACAGAGGTATGCATACA 960 ******************************************************* **** consensus_12792#0 CTTTCCAGAATTATGTGTTTGTTACAAGGGTCATGCAAGAGAAGGAATCTTCAAGTGGCA 1016 consensus_12792#2 CTTTCCAGAATTATGTGTTTGTTACAAGGGTCATGCAAGAGAAGGAATCTTCAAGTGGCA 474 consensus_12792#1 CTTTCCAGAATTATGTGTTTGTAA--------ATCTAAGAGCTAGTCCCGACACTTGCCA 1012 ********************** * ** ***** * * ** ** ** consensus_12792#0 TAAAGCCTCTCAGGTTGATGGAAAGAAGTGTTTTCAGTGATAGAATGGTTTTTGTTCGTG 1076 consensus_12792#2 TAAAGCCTCTCATGTTGATGGAAAGAAGTGTTTTCAGTGATAGAATGGTTTTTGTTCGTG 534 consensus_12792#1 CAAAAGA----ATGATGGTTCGGAAAAG-ATCTGAAG----AGGGTGGTGTTACTCTTGA 1063 *** * * ** * * *** * * ** ** **** ** * consensus_12792#0 CTGTCCATGAAGCCAACTGGATGAACGAGATGGAGATCAGCATCTATGACTCCTGGTTTG 1136 consensus_12792#2 CTGTCCATGAAGCCAACTGGATGAACGAGATGGAGATCAGCATCTATGACTCCTGGTTTG 594 consensus_12792#1 TTACCTTCGAGGTTTGCATGAGAAACATGAGAGCTGGCTGCTTCCTTC-CAAAGGACAAG 1122 * * ** * * ** *** ** * * ** ** * * * * consensus_12792#0 ACCCAGTGGTGTCATCACTC--CCAGGACTTATTCCAGATGGTTTTATTTATCTAAGAGC 1194 consensus_12792#2 ACCCATTGGTGTCATCACTC--CCAGGACTTATTCCAGATGGT----------------- 635 consensus_12792#1 GTCCTGGTGTATTATCGGTCAGTCAAGTTCCAGTCCATATGGAGGGCTCTTTGCCTCCGG 1182 ** ** * *** ** ** * * **** **** consensus_12792#0 TAGTCCCGACACTTGC-CACAAAAGAATGATGGTTCGGAAAAGATCTGAAGAGGGTGGTG 1253 consensus_12792#2 ------------------------------------------------------------ consensus_12792#1 ATATAAGAGAACGAGTATTCTACTTAGAAGGAGATCATATGCATTCTAGTATCCAGAAGG 1242 consensus_12792#0 TTACTCTTGATTACCTTCGAGGTTTGCATGAGAAACATGAGAGCTGGCTGCTTCCTTCCA 1313 consensus_12792#2 ------------------------------------------------------------ consensus_12792#1 TTCCTGCTCTGGTCCTCGACTGCGAACATGACATTGATTTTAACAAGGATATTGAAGCCA 1302 consensus_12792#0 AAGGACAAGGTCCTGGTGTATTATCGGTCAGTCAAGTTCCAGTCCATATGGAGGGCTCTT 1373 consensus_12792#2 ------------------------------------------------------------ consensus_12792#1 AACGACAATATGCCCGACAAGTTGCGGAGTTCTTTGAATTTGTAAAGAAAAAGAAAGAAG 1362 consensus_12792#0 TGCCTCCGGATATAAGAGAACGAGTATTCTACTTAGAAGGAGATCATATGCATTCTAGTA 1433 consensus_12792#2 ------------------------------------------------------------ consensus_12792#1 ATCCTTCTGC----GGAGTCAAGTGGTGGTGATAAGAGTACCAACAAACAGATTATGCTT 1418 consensus_12792#0 TCCAGAAGGTTCCTGCTCTGGTCCTCGACTGCGAACATGACATTGATTTTAACAAGGATA 1493 consensus_12792#2 ------------------------------------------------------------ consensus_12792#1 CCCCACAGAGGTGGTTTGTGGGTTCCCGAAGGTAACCCTTTACCAGGATCTGCTCTGAAC 1478 consensus_12792#0 TTGAAGCCAAACGACAGTAAGTTTTGCAAAACCTTTATTTTGTCCATAGGACAATTGTCA 1553 consensus_12792#2 ------------------------------------------------------------ consensus_12792#1 TCTCTGGATTTCAGAAG--AGCAATGTCTTCCTTCCTCTCAGCTTAGGGGCCAACATCCC 1536 consensus_12792#0 ACCTTATATTATTTTCTTCTAGTGCTAGCCTGTATTTATTTCATAAGAAAAGAACATCTA 1613 consensus_12792#2 ------------------------------------------------------------ consensus_12792#1 ATATGAAATAGCCAATTCCTGGCCACCATATGTTCCAGTATTACAA---------ATTCT 1587 consensus_12792#0 AGAACATCTAGTGCTAGCCTGTATTTATTTACTAGTTCATTCTTCTTAACAAACACAAAC 1673 consensus_12792#2 ------------------------------------------------------------ consensus_12792#1 GAATGGTCCATCGTCACATCTGCGTCTCAGATAGCCTTGAACTGACGACCCTGTAAATGC 1647 consensus_12792#0 ATTATATTTATTCCAAAATTGAACTCAACCCTGTTCGTATAGTGGCTGCGTTCTAGTCAC 1733 consensus_12792#2 ------------------------------------------------------------ consensus_12792#1 TGAAGATTTATTGAAATATAGGTTTCTGTATAGCGCTAGCCAATGCTGTACAATAGTAGT 1707 consensus_12792#0 ACGGTAG--GTCTACCTTGATCTTTATTCATAGTGGTCAAGATTTCAAAGTTCAACTTTA 1791 consensus_12792#2 ------------------------------------------------------------ consensus_12792#1 ATCAAACTCGTCCATGTAAATGTTCACTCTTCTTCGTCGTCAATAAAAGGCGTCCCTGTA 1767 consensus_12792#0 CAACTGTTGAAATGCTAGAAAGACTATAGGAGCACAAAAAAGAAATGCTTTTCTTGTATG 1851 consensus_12792#2 ------------------------------------------------------------ consensus_12792#1 AATGATTAAAAAAAAAAAAAAA-------------------------------------- 1789 consensus_12792#0 TGGCTTCAAGTTAAGAGGGATCAGAGTACAACTATTATCCTATAGCTCATGCATCATTCT 1911 consensus_12792#2 ------------------------------------------------------------ consensus_12792#1 ------------------------------------------------------------ consensus_12792#0 TCCTTTGTGTATGGCATACATGTATTTTGTAGTACTTGGTATGAAGTTTCTTTCTGCTAG 1971 consensus_12792#2 ------------------------------------------------------------ consensus_12792#1 ------------------------------------------------------------ consensus_12792#0 TTTAGTTGCATGACACTTCTTGCTTAAATTCCTTACATCGAATGTTTAGTACCAACTCAA 2031 consensus_12792#2 ------------------------------------------------------------ consensus_12792#1 ------------------------------------------------------------ consensus_12792#0 CTGCTAGCAACATATCCGTATATGACATGGTTTATGACATATTAGGAACTCAATTATTTT 2091 consensus_12792#2 ------------------------------------------------------------ consensus_12792#1 ------------------------------------------------------------ consensus_12792#0 GTTTTTGCACTTTTCATTATAGTTCATTTATATGAAGAGTCTTGTGCTTAA 2142 consensus_12792#2 --------------------------------------------------- consensus_12792#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||