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Oryza sativa
cluster # 12793 cluster # 12793       Sequences # 11       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12793#0 length = 1296 sequences # 6  
consensus_12793#1 length = 861 sequences # 2  
consensus_12793#2 length = 589 sequences # 2  
consensus_12793#3 length = 515 sequences # 1  

consensusID : consensus_12793#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1296
fasta sequence
                              [CCGCCCCCTTCAACGAGGGCCGCACCATCTTCATCACGGGGCTCCCCACCGACGTCAAGGAGCGGGAGCTCCACAACCTGCTCCGCTGGCTCCCCGGGTTCGAGGCCTCCCAGATCAACTTCAAGGGCGACCAGCCCATGGGGTTCGCGCTCTTCTCCTCCGCGCACCACGCCATCGCCGCCAAGGCCGCGCTGCAGGATCTCATCTTCGATGCGGAGACCAAGACGGCGCTGCACACCGAGATGGCCAAGAAGAACCTCTTCGTCAAGAGAGGTGTGGGAAACGATGCAAATGCTATGGACCAAAGTAAACGCTTGCGGACTGGTGGAGATTATACTCATTCTCCTTATGCTGCTCCCCCATATCATCCACCCCCACCAGCTGTTTCCATGTGGGGAACTCCAGGTTATATCGCGGCACCTCCACCTTACAATCATTATGCTGCCTATTCAGTGCCTCCTGTGGCAATGACTTCACCTTCTCCCGTACCAGGTCCAACTGCCTATGCTCCTGTTCAGAATACAAAGGATAACCCTCCCTGTAATACCCTTTTCATTGGTAATCTTGGAGAAACTGTTATTGAAGAGGAATTGCGGAGCCTCTTCAGCGTGCAACCTGGTTATAAACAAATGAAGGTGTTGCGCCAAGACAGGAACACTGTTTGTTTCATTGAGTTTGAGGATGTGAATGCTGCATCAGCTGTACACCATAATCTACAGGGTGCTGTTATTCCTAGCTCTGGTCGTGGTGGAATGCGAATTCAATTTTCGAAAAATCCCTATGGCCGAAGGAAGGATTCTGTTGGTGGAATTGGGGGCTCTCTAAATGGAGCTCCTTCAAACTGAGAGGGGATGTAACTTGAACTTTAGCATCCTACTAAATTATCATCTGCATATTTTCTTCTAAATGCTTGTTTCTGTCATGTGGCATCACCATCTCCATTAGGTTGAATTTCTGGCCATGATCATCTTCTTTACATGGAGTTTCTTGGACATGATCATCATCTTTATTAGGTGGAGTTTCTGGGACATGATCATCATCTGATAGACTTTGCATTGTTACCATTATCATCGCTGGTGGTGTGGAATCCTTTATTTTCTATATGTAGTTTGAGAAGCACATTTCGAGCATCTTGTAGATGTGCATTTGCCGCTTGTCATGGATATTCTGCAGTATTCTGTAGTTTTCTTGTGTTTAGTTGCTACATCTCATGTGTCCATGTCATTGTCACTTTGCAAACAGGACAGTCTGTAATAGTATAACTGAGTTTTCTTAAAAAAAAAAAAAAGGAAACAC]

[+] EMBL CB656356             [CCGCCCCCTTCAACGAGGGCCGCACCATCTTCATCACGGGGCTCCCCACCGACGTCAAGGAGCGGGAGCTCCACAACCTGCTCCGCTGGCTCCCCGGGTTCGAGGCCTCCCAGATCAACTTCAAGGGCGACCAGCCCATGGGGTTCGCGCTCTTCTCCTCCGCGCACCACGCCATCGCCGCCAAGGCCGCGCTGCAGGATCTCATCTTCGATGCGGAGACCAAGACGGCGCTGCACACCGAGATGGCCAAGAAGAACCTCTTCGTCAAGAGAGGTGTGGGAAACGATGCAAATGCTATGGACCAAAGTAAACGCTTGCGGACTGGTGGAGATTATACTCATTCTCCTTATGCTGCTCCCCCATATCATCCACCCCCACCAGCTGTTTCCATGTGGGGAACTCCAGGTTATATCGCGGCACCTCCACCTTACAATCATTATGCTGCCTATTCAGTGCCTCCTGTGGCAATGACTTCACCTTCTCCCGTACCAGGTCCAACTGCCTATGCTCCTGTTCAGAATACAAAGGATAACCCTCCCTGTAATACCCTTTTCATTGGTAATCTTGGAGAAACTGTTATTGAAGAGGAATTGCGGAGCCTCTTCAGCGTGCAACCTGGTTATAAACAAATGAAGGTGTTGCGCCAAGACAGGAACACTGTTTGTTTCATTGAGTTTGAGGATGTGAATGCTGCATCAGCTGTACACCATAATCTACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CF329819             [                                                                                                                                                                                                                                                                                                            ACCAAAGTAAACGCTTGCGGACTGGTGGAGATTATACTCATTCTCCTTATGCTGCTCCCCCATATCATCCACCCCCACCAGCTGTTTCCATGTGGGGAACTCCAGGTTATATCGCGGCACCTCCACCTTACAATCATTATGCTGCCTATTCAGTGCCTCCTGTGGCAATGACTTCACCTTCTCCCGTACCAGGTCCAACTGCCTATGCTCCTGTTCAGAATACAAAGGATAACCCTCCCTGTAATACCCTTTTCATTGGTAATCTTGGAGAAACTGTTATTGAAGAGGAATTGCGGAGCCTCTTCAGCGTGCAACCTGGTTATAAACAAATGAAGGTGTTGCGCCAAGACAGGAACACTGTTTGTTTCATTGAGTTTGAGGATGTGAATGCTGCATCAGCTGTACACCATAATCTACAGGGTGCTGTTATTCCTAGCTCTGGTCGTGGTGGAATGCGAATTCAATTTTCGAAAAATCCCTATGGCCGAAGGAAGGATTCTGTTGGTGGAATTGGGGGCTCTCTAAATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BE230433             [                                                                                                                                                                                                                                                                                                                                                                                                                               GGCACCTCCACCTTACAATCATTATGCTGCCTATTCAGTGCCTCCTGTGGCAATGACTTCACCTTCTCCCGTACCAGGTCCAACTGCCTATGCTCCTGTTCAGAATACAAAGGATAACCCTCCCTGTAATACCCTTTTCATTGGTAATCTTGGAGAAACTGTTATTGAAGAGGAATTGCGGAGCCTCTTCAGCGTGCAACCTGGTTATAAACAAATGAAGGTGTTGCGCCAAGACAGGAACACTGTTTGTTTCATTGAGTTTGAGGATGTGAATGCTGCATCAGCTGTACACCATAATCTACAGGGTGCTGTTATTCCTAGCTCTGGTCGTGGTGGAATGCGAATTCAATTTTCGAAAAATCCCTATGGCCGAAGGAAGGATTCTGTTGGTGGAATTGGGGGCTCTCTAAATGGAGCTCCTTCAAACTGAGAGGGGATGTAACTTGAACTTTAGCATCCTACTAAATTATCATCTGCATATTTTCTTCTAAATG                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BE229915             [                                                                                                                                                                                                                                                                                                                                                                                                                               GGCACCTCCACCTTACAATCATTATGCTGCCTATTCAGTGCCTCCTGTGGCAATGACTTCACCTTCTCCCGTACCAGGTCCAACTGCCTATGCTCCTGTTCAGAATACAAAGGATAACCCTCCCTGTAATACCCTTTTCATTGGTAATCTTGGAGAAACTGTTATTGAAGAGGAATTGCGGAGCCTCTTCAGCGTGCAACCTGGTTATAAACAAATGAAGGTGTTGCGCCAAGACAGGAACACTGTTTGTTTCATTGAGTTTGAGGATGTGAATGCTGCATCAGCTGTACACCATAATCTACAGGGTGCTGTTATTCCTAGCTCTGGTCGTGGTGGAATGCGAATTCAATTTTCGAAAAATCCCTATGGCCGAAGGAAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB656357             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGGATAACCCTCCCTGTAATACCCTTTTCATTGGTAATCTTGGAGAAACTGTTATTGAAGAGGAATTGCGGAGCCTCTTCAGCGTGCAACCTGGTTATAAACAAATGAAGGTGTTGCGCCAAGACAGGAACACTGTTTGTTTCATTGAGTTTGAGGATGTGAATGCTGCATCAGCTGTACACCATAATCTACAGGGTGCTGTTATTCCTAGCTCTGGTCGTGGTGGAATGCGAATTCAATTTTCGAAAAATCCCTATGGCCGAAGGAAGGATTCTGTTGGTGGAATTGGGGGCTCTCTAAATGGAGCTCCTTCAAACTGAGAGGGGATGTAACTTGAACTTTAGCATCCTACTAAATTATCATCTGCATATTTTCTTCTAAATGCTTGTTTCTGTCATGTGGCATCACCATCTCCATTAGGTTGAATTTCTGGCCATGATCATCTTCTTTACATGGAGTTTCTTGGACATGATCATCATCTTTATTAGGTGGAGTTTCTGGGACATGATCATCATCTGATAGACTTTGCATTGTTACCATTATCATCGCTGGTGGTGTGGAATCCTTTATTTTCTATATGTAGTTTGAGAAGCACATTTCGAGCATCTTGTAGATGTGCATTTGCCGCTTGTCATGGATATTCTGCAGTATTCTGTAGTTTTCTTGTGTTTAGTTGCTACATCTCATGTGTCCATGTCATTGTCACTTTGCAAACAGGACAGTCTGTAATAGTATAACTGAGTTTTCTTAAAAAAAAAAAAAAGG      ]
[-] EMBL CF329820             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GTTATTCCTAGCTCTGGTCGTGGTGGAATGCGAATTCAATTTTCGAAAAATCCCTATGGCCGAAGGAAGGATTCTGTTGGTGGAATTGGGGGCTCTCTAAATGGAGCTCCTTCAAACTGAGAGGGGATGTAACTTGAACTTTAGCATCCTACTAAATTATCATCTGCATATTTTCTTCTAAATGCTTGTTTCTGTCATGTGGCATCACCATCTCCATTAGGTTGAATTTCTGGCCATGATCATCTTCTTTACATGGAGTTTCTTGGACATGATCATCATCTTTATTAGGTGGAGTTTCTGGGACATGATCATCATCTGATAGACTTTGCATTGTTACCATTATCATCGCTGGAAAAAAGGAATCCTTTATTTTCTATATGTAGTTTGAGAAGCACATTTAAAGCATCTTGTAGATGTGCATTTGCCGCTTGTCATGGATATTCTGCAGTATTCTGTAGTTTTCTTGTGTTTAGTTGCTACATCTCATGTGTCCATGTCATTGTCACTTTGCAAACAGGACATTCTGTAAGAGTATAACTGAGTTTTCTTAAAAAAAAAAAAAAAAAAACAC]


>consensus_12793#0 CCGCCCCCTTCAACGAGGGCCGCACCATCTTCATCACGGGGCTCCCCACCGACGTCAAGG AGCGGGAGCTCCACAACCTGCTCCGCTGGCTCCCCGGGTTCGAGGCCTCCCAGATCAACT TCAAGGGCGACCAGCCCATGGGGTTCGCGCTCTTCTCCTCCGCGCACCACGCCATCGCCG CCAAGGCCGCGCTGCAGGATCTCATCTTCGATGCGGAGACCAAGACGGCGCTGCACACCG AGATGGCCAAGAAGAACCTCTTCGTCAAGAGAGGTGTGGGAAACGATGCAAATGCTATGG ACCAAAGTAAACGCTTGCGGACTGGTGGAGATTATACTCATTCTCCTTATGCTGCTCCCC CATATCATCCACCCCCACCAGCTGTTTCCATGTGGGGAACTCCAGGTTATATCGCGGCAC CTCCACCTTACAATCATTATGCTGCCTATTCAGTGCCTCCTGTGGCAATGACTTCACCTT CTCCCGTACCAGGTCCAACTGCCTATGCTCCTGTTCAGAATACAAAGGATAACCCTCCCT GTAATACCCTTTTCATTGGTAATCTTGGAGAAACTGTTATTGAAGAGGAATTGCGGAGCC TCTTCAGCGTGCAACCTGGTTATAAACAAATGAAGGTGTTGCGCCAAGACAGGAACACTG TTTGTTTCATTGAGTTTGAGGATGTGAATGCTGCATCAGCTGTACACCATAATCTACAGG GTGCTGTTATTCCTAGCTCTGGTCGTGGTGGAATGCGAATTCAATTTTCGAAAAATCCCT ATGGCCGAAGGAAGGATTCTGTTGGTGGAATTGGGGGCTCTCTAAATGGAGCTCCTTCAA ACTGAGAGGGGATGTAACTTGAACTTTAGCATCCTACTAAATTATCATCTGCATATTTTC TTCTAAATGCTTGTTTCTGTCATGTGGCATCACCATCTCCATTAGGTTGAATTTCTGGCC ATGATCATCTTCTTTACATGGAGTTTCTTGGACATGATCATCATCTTTATTAGGTGGAGT TTCTGGGACATGATCATCATCTGATAGACTTTGCATTGTTACCATTATCATCGCTGGTGG TGTGGAATCCTTTATTTTCTATATGTAGTTTGAGAAGCACATTTCGAGCATCTTGTAGAT GTGCATTTGCCGCTTGTCATGGATATTCTGCAGTATTCTGTAGTTTTCTTGTGTTTAGTT GCTACATCTCATGTGTCCATGTCATTGTCACTTTGCAAACAGGACAGTCTGTAATAGTAT AACTGAGTTTTCTTAAAAAAAAAAAAAAGGAAACAC



consensusID : consensus_12793#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 861
fasta sequence
                              [CATCTGATAGACTTTGCATTGTCACCATTATCATCGCTGGTGGTGTGGAATCCTTTATTTTCTATATGTAGTTTGAGAAGCACATTTCGAGCATCTTGTAGATGTGCATTTGCCGCTTGTCATGGATATTCTGCAGTATTCTGTAGTTTTCTTGTGTNTAGTTGCTACATCTCATGTGTCCATGTCATTGTCACTTTGCAAACAGGACATTCTGTAATAGTATAACTGAGTTTTCTTACTAGAAGTTTGATACTGTGGCATAATGGGACTAGAAGTTTGATACTGTGGCATAATGGGGGTGATTCATACAAGCATGTCATGGCATGTTCATCAGGGAAGGACAGTTGATAGACATCATGGCATGGCATACTCATTTAAGGAAACCTGGAGCATTGTGTTCACAGCACGAAGCATGCAACTATCAATTGCTGTTTTAACTTAATTCTTTCAGTACTCAGTATCCAATCAGAGAGTAGCTAACATATTGACAATAAAATAGAAATAGCTGCAAAGCCCTTTTGTTTTTCTGTAGCAGATGATGAATGATCTTGAGTGGCATTCGTTTGGTATAAGAGAAGCTCGTGGATGCAGAGGAAAGGTAAGCTGCTCTTCAGAGGTATGAAGTAAAAGATAGTCAGGTTTACATTGCCATGAGGCGGCTGCTGGAGGTACTACGTCACTTCAACTTCAACTTGTAACAGTTCATTCAAAGCTCAGACAAACCAATGAAAACAATGTTAGTGCTGAGAACGTGTTCCCAATGGAATGGGAAAGTGATGATCAATTCTTTGTTTCTGGGGATATGAATAAGGTTGCTTGGTTGATAAATTGGATTGAGTTTAATACGCAGACGGGATTAAA]

[-] EMBL CB632266             [CATCTGATAGACTTTGCATTGTCACCATTATCATCGCTGGTGGTGTGGAATCCTTTATTTTCTATATGTAGTTTGAGAAGCACATTTCGAGCATCTTGTAGATGTGCATTTGCCGCTTGTCATGGATATTCTGCAGTATTCTGTAGTTTTCTTGTGTNTAGTTGCTACATCTCATGTGTCCATGTCATTGTCACTTTGCAAACAGGACATTCTGTAATAGTATAACTGAGTTTTCTTACTAGAAGTTTGATACTGTGGCATAATGGGACTAGAAGTTTGATACTGTGGCATAATGGGGGTGATTCATACAAGCATGTCATGGCATGTTCATCAGGGAAGGACAGTTGATAGACATCATGGCATGGCATACTCATTTAAGGAAACCTGGAGCATTGTGTTCACAGCACGAAGCATGCAACTATCAATTGCTGTTTTAACTTAATTCTTTCAGTACTCAGTATCCAATCAGAGAGTAGCTAACATATTGACAATAAAATAGAAATAGCTGCAAAGCCCTTTTGTTTTTCTGTAGCAGATGATGAATGATCTTGAGTGGCATTCGTTTGGTATAAGAGAAGCTCGTGGATGCAGAGGAAAGGTAAGCTGCTCTTCAGAGGTATGAAGTAAAAGATAGTCAGGTTTACATTGCCATGAGGCGGCTGCTGGAGGTACTACGTCACTTCAACTTCAACTTGTAACAGTTCATTCAAAGCTCAGACAAACCAATGAAAACAATGTTAGTGCTGAGAACGTGTTCCCAATGGAATGGGAAAGTGATGATCAATTCTTTGTTTCTGGGGATATGAATAAGGTTGCTTGGTTGATAAATTGGATTGAGTTTAATACGCAGACGGGATTAAA]
[-] EMBL CB632265             [                                                                                                                                 TCTGCAGTATTCTGTAGTTTTCTTGTGTTTAGTTGCTACATCTCATGTGTCCATGTCATTGTCACTTTGCAAACAGGACATTCTGTAATAGTATAACTGAGTTTTCTTACTAGAAGTTTGATACTGTGGCATAATGGGACTAGAAGTTTGATACTGTGGCATAATGGGGGTGATTCATACAAGCATGTCATGGCATGTTCATCAGGGAAGGACAGTTGATAGACATCATGGCATGGCATACTCATTTAAGGAAACCTGGAGCATTGTGTTCACAGCACGAAGCATGCAACTATCAATTGCTGTTTTAACTTAATTCTTTCAGTACTCAGTATCCAATCAGAGAGTAGCTAACATATTGACAATAAAATAGAAATAGCTGCAAAGCCCTTTTGTTTTTCTGTAGCAGATGATGAATGATCTTGAGTGGCATTCGTTTGGTATAAGAGAAGCTCGTGGATGCAGAGGAAAGGTAAGCTGCTCTTCAGAGGTATGAAGTAAAAGATAGTCAGGTTTACATTGCCATGAGGCGGCTGCTGGAGGTACTACGTCACTTCAACTTCAACTTGTAACAGTTCATTCAAAGCTCAGACAAACCAATGAAAACAATGTTAGGGGTGAGAACGTGTTCCCAATGGAATGGGAAAGTGATGATCAATTCTTTGTTTCTGGGGATATGAATTCTTAAGCTTGGTTGATAA                                  ]


>consensus_12793#1 CATCTGATAGACTTTGCATTGTCACCATTATCATCGCTGGTGGTGTGGAATCCTTTATTT TCTATATGTAGTTTGAGAAGCACATTTCGAGCATCTTGTAGATGTGCATTTGCCGCTTGT CATGGATATTCTGCAGTATTCTGTAGTTTTCTTGTGTNTAGTTGCTACATCTCATGTGTC CATGTCATTGTCACTTTGCAAACAGGACATTCTGTAATAGTATAACTGAGTTTTCTTACT AGAAGTTTGATACTGTGGCATAATGGGACTAGAAGTTTGATACTGTGGCATAATGGGGGT GATTCATACAAGCATGTCATGGCATGTTCATCAGGGAAGGACAGTTGATAGACATCATGG CATGGCATACTCATTTAAGGAAACCTGGAGCATTGTGTTCACAGCACGAAGCATGCAACT ATCAATTGCTGTTTTAACTTAATTCTTTCAGTACTCAGTATCCAATCAGAGAGTAGCTAA CATATTGACAATAAAATAGAAATAGCTGCAAAGCCCTTTTGTTTTTCTGTAGCAGATGAT GAATGATCTTGAGTGGCATTCGTTTGGTATAAGAGAAGCTCGTGGATGCAGAGGAAAGGT AAGCTGCTCTTCAGAGGTATGAAGTAAAAGATAGTCAGGTTTACATTGCCATGAGGCGGC TGCTGGAGGTACTACGTCACTTCAACTTCAACTTGTAACAGTTCATTCAAAGCTCAGACA AACCAATGAAAACAATGTTAGTGCTGAGAACGTGTTCCCAATGGAATGGGAAAGTGATGA TCAATTCTTTGTTTCTGGGGATATGAATAAGGTTGCTTGGTTGATAAATTGGATTGAGTT TAATACGCAGACGGGATTAAA



consensusID : consensus_12793#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 589
fasta sequence
                              [CTGAAGATTCCCTTAAGCCTGCGTATTAAACTCAATCCAATTTATCAATCAAGCAATCGTATTCATATCCCCAGAAACAAAGAATTGATCATCACTTTCCCATACCATGGGGAACACATTCACAGCACTAACATTGTTTTCATTGTTTTGTCTGAAAAGATGCCTAGCTTTGAATGAACGGTTATAAGTTGAAGTTGCAGTGACGTAGAACCTCCAGCAGCCGCCTCATGGCAATGTAAACCTGACTATCTTTTACTTCATACCTCTGTAGAGCAGCTTACCTTTGTCCTCTGCATCCACGAGCTTCTCTTATACCAAACGAATGCCACTCAACATCATTCATCATCTGCTACA-GAAAAACAAAAGGGCGTTGCAGCTATTTCTATTTTATTGTCAATGTGTTAGCTTCTCTCTGATTGGATACTATAAGACTACTGAAAGAATTAAGTTAAAACAGCAATTGATAGTTGCATGCTTCGTGCTGAGAACACAATGCTCCACGTTTCCTTAAATGAGTATGCCCATGCCATGATGTCTATCAACTGTCCTTCCCTGATGAACATGCCCTGACATGATTGTATGAATCACC]

[+] EMBL CB618668             [CTGAAGATTCCCTTAAGCCTGCGTATTAAACTCAATCCAATTTATCAATCAAGCAATCGTATTCATATCCCCAGAAACAAAGAATTGATCATCACTTTCCCATACCATGGGGAACACATTCACAGCACTAACATTGTTTTCATTGTTTTGTCTGAAAAGATGCCTAGCTTTGAATGAACGGTTATAAGTTGAAGTTGCAGTGACGTAGAACCTCCAGCAGCCGCCTCATGGCAATGTAAACCTGACTATCTTTTACTTCATACCTCTGTAGAGCAGCTTACCTTTGTCCTCTGCATCCACGAGCTTCTCTTATACCAAACGAATGCCACTCAACATCATTCATCATCTGCTACA GAAAAACAAAAGGGCGTTGCAGCTATTTCTATTTTATTGTCAATGTGTTAGCTTCTCTCTGATTGGATACTATAAGACTACTGAAAGAATTAAGTTAAAACAGCAATTGATAGTTGCATGCTTCGTGCTGAGAACACAATGCTCCACGTTTCCTTAAATGAGTATGCCCATGCCATGATGTCTATCAACTGTCCTTCCCTGATGAACATGCCCTGACATGATTGTATGAATCACC]
[-] EMBL AA749970             [                                                                                                                                                                                                                                                                                                                    CTTATACCAAACGAATGCCACTCAAGATCATTCATCATCTGCTACAGGAAAAACAAAA GGCGTTGCAGCTATTTCTATTTTATTGTCAATGTGTTAGCTTCTCTCTGCTTGGATACTATAAGAGTACTGAAAGAATTAAGTTAAAACAGCAATTGATAGTTGCATGCTTCGTGCTGTGAACACAATGCTCCAGGTTTCCTTAAATGAGTATG CCATGCCATGAT                                                        ]


>consensus_12793#2 CTGAAGATTCCCTTAAGCCTGCGTATTAAACTCAATCCAATTTATCAATCAAGCAATCGT ATTCATATCCCCAGAAACAAAGAATTGATCATCACTTTCCCATACCATGGGGAACACATT CACAGCACTAACATTGTTTTCATTGTTTTGTCTGAAAAGATGCCTAGCTTTGAATGAACG GTTATAAGTTGAAGTTGCAGTGACGTAGAACCTCCAGCAGCCGCCTCATGGCAATGTAAA CCTGACTATCTTTTACTTCATACCTCTGTAGAGCAGCTTACCTTTGTCCTCTGCATCCAC GAGCTTCTCTTATACCAAACGAATGCCACTCAACATCATTCATCATCTGCTACAGAAAAA CAAAAGGGCGTTGCAGCTATTTCTATTTTATTGTCAATGTGTTAGCTTCTCTCTGATTGG ATACTATAAGACTACTGAAAGAATTAAGTTAAAACAGCAATTGATAGTTGCATGCTTCGT GCTGAGAACACAATGCTCCACGTTTCCTTAAATGAGTATGCCCATGCCATGATGTCTATC AACTGTCCTTCCCTGATGAACATGCCCTGACATGATTGTATGAATCACC



consensusID : consensus_12793#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 515
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTAATCAGGCCTGCGTATTAAACTCAATCCAATTTATCAATCAAGCAATCGTATTCATATCCCCAGAAACAAAGAATTGATCATCACTTTCCCATACCATGGGGAACACATTCACAGCACTAACATTGTTTTCATTGTTTTGTCTGAAAAGATGCCTAGCTTTGAATGAACGGTTATAAGTTGAAGTTGCAGTGACGTANAACCTCCAGCAGCCGCCTCATGGCAATGTAAACCTGACTATCTTTTACTTCATACCTCTGTNNAGCAGCTTACCTTTGGTCCTCTGCATCCNCGANCTTTCTCTTTATACCAAAACGAATGCCACTCCAAGAATNATTCATCANCTGGCTACAGAAAAAACCAAAAGGGGGTTGCAGCTNTTTCCCATTTTANTGTCANTGTGTTTAGCCTCCCCCCNGNTNGGATCTATAAGAATTCTGGAAAAATTAANTTNAAACAGCAATTGGATNTTGCATCCTNCTNCTGTGA]

[+] EMBL AA752149             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTAATCAGGCCTGCGTATTAAACTCAATCCAATTTATCAATCAAGCAATCGTATTCATATCCCCAGAAACAAAGAATTGATCATCACTTTCCCATACCATGGGGAACACATTCACAGCACTAACATTGTTTTCATTGTTTTGTCTGAAAAGATGCCTAGCTTTGAATGAACGGTTATAAGTTGAAGTTGCAGTGACGTANAACCTCCAGCAGCCGCCTCATGGCAATGTAAACCTGACTATCTTTTACTTCATACCTCTGTNNAGCAGCTTACCTTTGGTCCTCTGCATCCNCGANCTTTCTCTTTATACCAAAACGAATGCCACTCCAAGAATNATTCATCANCTGGCTACAGAAAAAACCAAAAGGGGGTTGCAGCTNTTTCCCATTTTANTGTCANTGTGTTTAGCCTCCCCCCNGNTNGGATCTATAAGAATTCTGGAAAAATTAANTTNAAACAGCAATTGGATNTTGCATCCTNCTNCTGTGA]


>consensus_12793#3 TTTTTTTTTTTTTTTTTTTTTTTTTTTTAATCAGGCCTGCGTATTAAACTCAATCCAATT TATCAATCAAGCAATCGTATTCATATCCCCAGAAACAAAGAATTGATCATCACTTTCCCA TACCATGGGGAACACATTCACAGCACTAACATTGTTTTCATTGTTTTGTCTGAAAAGATG CCTAGCTTTGAATGAACGGTTATAAGTTGAAGTTGCAGTGACGTANAACCTCCAGCAGCC GCCTCATGGCAATGTAAACCTGACTATCTTTTACTTCATACCTCTGTNNAGCAGCTTACC TTTGGTCCTCTGCATCCNCGANCTTTCTCTTTATACCAAAACGAATGCCACTCCAAGAAT NATTCATCANCTGGCTACAGAAAAAACCAAAAGGGGGTTGCAGCTNTTTCCCATTTTANT GTCANTGTGTTTAGCCTCCCCCCNGNTNGGATCTATAAGAATTCTGGAAAAATTAANTTN AAACAGCAATTGGATNTTGCATCCTNCTNCTGTGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12793#2      ------------------------------------------------------------
consensus_12793#3      ------------------------------------------------------------
consensus_12793#1      ------------------------------------------------------------
consensus_12793#0      CCGCCCCCTTCAACGAGGGCCGCACCATCTTCATCACGGGGCTCCCCACCGACGTCAAGG 60
                                                                                   

consensus_12793#2      ------------------------------------------------------------
consensus_12793#3      ------------------------------------------------------------
consensus_12793#1      ------------------------------------------------------------
consensus_12793#0      AGCGGGAGCTCCACAACCTGCTCCGCTGGCTCCCCGGGTTCGAGGCCTCCCAGATCAACT 120
                                                                                   

consensus_12793#2      ------------------------------------------------------------
consensus_12793#3      ------------------------------------------------------------
consensus_12793#1      ------------------------------------------------------------
consensus_12793#0      TCAAGGGCGACCAGCCCATGGGGTTCGCGCTCTTCTCCTCCGCGCACCACGCCATCGCCG 180
                                                                                   

consensus_12793#2      ------------------------------------------------------------
consensus_12793#3      ------------------------------------------------------------
consensus_12793#1      ---------------------------------------------------CATCTGATA 9
consensus_12793#0      CCAAGGCCGCGCTGCAGGATCTCATCTTCGATGCGGAGACCAAGACGGCGCTGCACACCG 240
                                                                                   

consensus_12793#2      ------------------------------------------------------------
consensus_12793#3      ----------------------------------------------TTTTTTTTTTTTTT 14
consensus_12793#1      GACTTTGCATTGTCACCATTATCATCGCTGGTGGTGTGGAATCCTTTATTTTCTATATGT 69
consensus_12793#0      AGATGGCCAAGAAGAACCTCTTCGTCAAGAGAGGTGTGGGAAACGATGCAAATGCTATGG 300
                                                                                   

consensus_12793#2      ----CTGAAGATTCCCTTAAGCCTGC-----GTATTAAACTCAATCCA--ATTTATCA-- 47
consensus_12793#3      TTTTTTTTTTTTTTAATCAGGCCTGC-----GTATTAAACTCAATCCA--ATTTATCA-- 65
consensus_12793#1      AGTTTGAGAAGCACATTTCGAGCATC-----TTGTAGATGTGCATTTGCCGCTTGTCATG 124
consensus_12793#0      ACCAAAGTAAACGCTTGCGGACTGGTGGAGATTATACTCATTCTCCTTATGCTGCTCCCC 360
                                                       * *     *           *  **   

consensus_12793#2      ---ATCAAGCAATCGT--ATTCATATCCCCAGAAACAAAGA----ATTGATCATCA-CTT 97
consensus_12793#3      ---ATCAAGCAATCGT--ATTCATATCCCCAGAAACAAAGA----ATTGATCATCA-CTT 115
consensus_12793#1      GATATTCTGCAGTATT--CTGTAGTTTTCTTGTGTNTAGTT----GCTACATCTCA-TGT 177
consensus_12793#0      CATATCATCCACCCCCACCAGCTGTTTCCATGTGGGGAACTCCAGGTTATATCGCGGCAC 420
                          **    **              *  *  *     *         *      *     

consensus_12793#2      TCCCATACCATGGGGAACACAT-----TCACAGCAC---TAACATTGTTTTCATTGTTTT 149
consensus_12793#3      TCCCATACCATGGGGAACACAT-----TCACAGCAC---TAACATTGTTTTCATTGTTTT 167
consensus_12793#1      GTCCATGTCATTGTCACTTTGC-----AAACAGGACATTCTGTAATAGTATAACTGAGTT 232
consensus_12793#0      CTCCACCTTACAATCATTATGCTGCCTATTCAGTGCCTCCTGTGGCAATGACTTCACCTT 480
                         ***    *     *              ***  *            *         **

consensus_12793#2      GTCTGAAAAGATGCCTAG--CTTTGAATGAACGG--TTATAAGTT-GAAGTTGCAG--TG 202
consensus_12793#3      GTCTGAAAAGATGCCTAG--CTTTGAATGAACGG--TTATAAGTT-GAAGTTGCAG--TG 220
consensus_12793#1      TTCTTACTAGAAGTTTGATACTGTGGCATAATGGGACTAGAAGTTTGATACTGTGGCATA 292
consensus_12793#0      CTCCCGTACCAGGTCCAACTGCCTATGCTCCTGT--TCAGAATACAAAGGATAACCCTCC 538
                        **       * *          *        *     * **     *   *        

consensus_12793#2      ACGTAG-AACCTCCA-GCAGCCGCCTCATGGCA------------ATGTAAACCTGACTA 248
consensus_12793#3      ACGTAN-AACCTCCA-GCAGCCGCCTCATGGCA------------ATGTAAACCTGACTA 266
consensus_12793#1      ATGGGG-GTGATTCATACAAGCATGTCATGGCATGTTCATCAGGGAAGGACAGTTGATAG 351
consensus_12793#0      CTGTAATACCCTTTTCATTGGTA-ATCTTGGAGAAACTGTTATTGAAGAGGAATTGCGGA 597
                         *        *             ** ***              * *   *  **    

consensus_12793#2      TCTTT----TACTTCATACCTCTGTAGAGCAGCTT--ACCTTTG--TCCTC--------- 291
consensus_12793#3      TCTTT----TACTTCATACCTCTGTNNAGCAGCTT--ACCTTTGG-TCCTC--------- 310
consensus_12793#1      ACATCATGGCATGGCATACTCATTTAAGGAAACCTGGAGCATTGTGTTCACAGCACGAAG 411
consensus_12793#0      GCCTCTTCAGCGTGCAACCTGGTTATAAACAAATGAAGGTGTTGC-GCCAAGACAGGAAC 656
                        * *          **  *   *       *          ***    *           

consensus_12793#2      --TGCATCCACGAGCTTCT--CTTATACCAAA-CGAATGCCA-CTC--AA----CATCAT 339
consensus_12793#3      --TGCATCCNCGANCTTTCTCTTTATACCAAAACGAATGCCA-CTCCAAG----AATNAT 363
consensus_12793#1      CATGCAACTATCAATTGCTGTTTTAACTTAATTCTTTCAGTA-CTCAGTATC-CAATCAG 469
consensus_12793#0      ACTGTTTGTTTCATTGAGTTTGAGGATGTGAATGCTGCATCAGCTGTACACCATAATCTA 716
                         **        *                 *          * **          **   

consensus_12793#2      TCATCATCTG-C-TACAGAAAAA--CA-AAAGGGCGTTGCAGCTATTTCT------ATTT 388
consensus_12793#3      TCATCANCTGGC-TACAGAAAAAACCA-AAAGGGGGTTGCAGCTNTTTCCC-----ATTT 416
consensus_12793#1      AGAGTAGCTAACATATTGACAATAAAATAGAAATAGCTGCAAAGCCCTTTT-----GTTT 524
consensus_12793#0      CAGGGTGCTGTTATTCCTAGCTCTGGTCGTGGTGGAATGCGAATTCAATTTTCGAAAAAT 776
                              **    *    *                  ***                   *

consensus_12793#2      TATTGTCAATGTGTT-AGCTTCTCTCTGATTGGATACTATAAGACTACTGAAAGAATTAA 447
consensus_12793#3      TANTGTCANTGTGTTTAGCCTCCCCCCNGNTNGGATCTATAAGAATTCTGGAAAAATTAA 476
consensus_12793#1      TTCTGT-AGCAGATGATGAATGATCTTGAGTGGCATTCGTTTGGTATAAGAGAAGCTCGT 583
consensus_12793#0      CCCTATGGCCGAAGGAAGGATTCTGTTGGTGGAATTGGGGGCTCTCTAAATGGAGCTCCT 836
                          * *           *  *                                   *   

consensus_12793#2      GTTAAA--ACAGCAATTGATAGTTGCATGCTTCG--TGCTGAGAACACAATGCTCCACGT 503
consensus_12793#3      NTTNAA--ACAGCAATTGGATNTTGCATCCTNC---TNCTGTGA---------------- 515
consensus_12793#1      GGATGC--AGAGGAAAGGTAAGCTGCTCTTCAGAGGTATGAAGTAAAAGATAGTCAGGTT 641
consensus_12793#0      TCAAACTGAGAGGGGATGTAACTTGAACTTTAGC--ATCCTACTAAATTATCATCTGCAT 894
                               * **     *     **                                   

consensus_12793#2      TTCCTTAAATGAGTATGCCCATGCCATGATGTCTATCAACTGTCCTTCCCTGATGAACAT 563
consensus_12793#3      ------------------------------------------------------------
consensus_12793#1      TACATTGCCATGAGGCGGCTGCTGGAGGTACTACGTCACTTCAACTTCAACTTGTAACAG 701
consensus_12793#0      ATTTTCTTCTAAATGCTTGTTTCTGTCATGTGGCATCAC--CATCTCCATTAGGTTGAAT 952
                                                                                   

consensus_12793#2      GCCCTGACATGATTGTATGAAT--CACC-------------------------------- 589
consensus_12793#3      ------------------------------------------------------------
consensus_12793#1      TTCATTCAAAGCTCAGACAAAC--CAATGAAAACAATGTTAGTGCTGAGAACGTGTTCCC 759
consensus_12793#0      TTCTGGCCATGATCATCTTCTTTACATGGAGTTTCTTGGACATGATCATCATCTTTATTA 1012
                                                                                   

consensus_12793#2      ------------------------------------------------------------
consensus_12793#3      ------------------------------------------------------------
consensus_12793#1      AATGGAATG---GGAAAGTGATGATCAATTCTTTGTTTCTGGG--GATATGAATAAGGTT 814
consensus_12793#0      GGTGGAGTTTCTGGGACATGATCATCATCTGATAGACTTTGCATTGTTACCATTATCATC 1072
                                                                                   

consensus_12793#2      ------------------------------------------------------------
consensus_12793#3      ------------------------------------------------------------
consensus_12793#1      GCTTGGTTGATAAATTGGATTGAGTTTAATACGCAGACGGGATTAAA------------- 861
consensus_12793#0      GCTGGTGGTGTGGAATCCTTTATTTTCTATATGTAGTTTGAGAAGCACATTTCGAGCATC 1132
                                                                                   

consensus_12793#2      ------------------------------------------------------------
consensus_12793#3      ------------------------------------------------------------
consensus_12793#1      ------------------------------------------------------------
consensus_12793#0      TTGTAGATGTGCATTTGCCGCTTGTCATGGATATTCTGCAGTATTCTGTAGTTTTCTTGT 1192
                                                                                   

consensus_12793#2      ------------------------------------------------------------
consensus_12793#3      ------------------------------------------------------------
consensus_12793#1      ------------------------------------------------------------
consensus_12793#0      GTTTAGTTGCTACATCTCATGTGTCCATGTCATTGTCACTTTGCAAACAGGACAGTCTGT 1252
                                                                                   

consensus_12793#2      --------------------------------------------
consensus_12793#3      --------------------------------------------
consensus_12793#1      --------------------------------------------
consensus_12793#0      AATAGTATAACTGAGTTTTCTTAAAAAAAAAAAAAAGGAAACAC 1296
                                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)