cluster # 12804

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Oryza sativa
cluster # 12804 cluster # 12804 Sequences # 11 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12804#0 length = 506 sequences # 3
consensus_12804#1 length = 503 sequences # 5

consensus_12804#2 length = 431 sequences # 2
consensus_12804#3 length = 269 sequences # 1

consensusID : consensus_12804#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 506
fasta sequence

                              [CGACGTTGTGGCGACACGGCTTCGGGTTTGGATGGACACGTGGACTGGGACGGGGAGGAGTGTTGGTGACGGGGAGGAGATAGGGGGGAA-GTGAAGGAGATGATGGCCGACGCCGGCGTG-CGGGAGAAGGCGGCCAAGGTCGGCGAGGAGGTG-TCCAAGGCGGTGGCCGTCGGCGGCACGAGCCACACGGGCATCCTGGATTTCGTCGCCAAGCTCAAGGCTGCAACTTAAGCACTTCTCTCTCGTGTTCGTCTGAGAAGAAATATCTACTGCTACATAATTCCTCCTTCAATGTCACATATAAGTGTA-CACAGT-GAAAGGAGGGAGTGTGATAAATAAAAGCACCTCTCGTGTGTGCGGCTATGCGTAGTTTGGGATTGAAAAAGGCC-ATTTCCCATTGGCA-GTTTGGCACCCACCAAGCTCCTCCTTGTTCCCGGTTAGGAAC-AATTTGGTTGTTTTCATTTTTCAGTTTGTTTCAGTTGTGTTGC-AATCTATTAAAAAAAAAA]

[+] EMBL BI812983             [CGACGTTGTGGCGACACGGCTTCGGGTTTGGATGGACACGTGGACTGGGACGGGGAGGAGTGTTGGTGACGGGGAGGAGATAGGGGGGAA GTGAAGGAGATGATGGCCGACGCCGGCGTG CGGGAGAAGGCGGCCAAGGTCGGCGAGGAGGTG TCCAAGGCGGTGGCCGTCGGCGGCACGAGCCACACGGGCATCCTGGATTTCGTCGCCAAGCTCAAGGCTGCAACTTAAGCACTTCTCTCTCGTGTTCGTCTGAGAAGAAATATCTACTGCTACATAATTCCTCCTTCAATGTCACATATAAGTGTA CACAGTGGAAAGGAGGGAGTGTGATAAATAAAAGCACCTCTCGTGTGTGCGGCTATGCGTAGTTTGGGATTGAAAAAGGCC ATTT CCATTGGCA GTTTGGCA CCACCAAGCTCCTCCTTGTTCCCGGTTAGGAAC AATTTGGTTGTTTTCATTTTTCAGTTTGTTTCAGTTGTGTTGC AATCTATTAAAAAAAAAA]
[+] EMBL BI812864             [                                                                    ggGGGGAGGAGATAGGGGGGAAGGTGAAGGAGATGATGGCCGACGCCGGCGTG CGGGAGAA GCGGCCAAGGTCGGCGAGGAGGTG TCCAAGGCGGT GCCGTCGGCGGCACGAGCCACACGGGCATCCTGGATTTCGTCGCCAAGCTCAAGGCTGCAACTTAAGCA TTCTCTCTCGTGTTCGTCTGAGAAGAAATATCTACTGCTACATAATTCCTCCTTCAATGTCACATATAAGTGTA CA AGT GAAAGGAGGGAGTGTGATAAATAAAAGCA CTCTCGTGTGTGCGGCTATGCGTAGTTTGGGATTGAAAAAGGCC ATTTCCCATTGGCA GTTTGGCACCCAaaaa                                                                                         ]
[+] EMBL BQ906030             [                                                                                                                    GCGTGCCGGGAGAAGGCGGCCAAGGTCGGCGAGGAGGTGTTCCAAGGCGGTGGCCGTCGGCGGCACGAGCCACACGGGCATCCTGGATTTCGTCGCCAAGCTCAAGGCTGCAACTTAAGCACTTCTCTCTCGTGTTCGTCTGAGAAGAAATATCTACTGCTACATAATTCCTCCTTCAATGTCACATATAAGTGTACCACAGT GAAAGGAGGGAGTGTGATAAATAAAAGCACCTCTCTTGTGTGCGGCTATGCGTAGTTTGGGATTGAAAAAGGCCAATTTCCCATTGGCACGTTTGGCACCACCCAAGCTCCTCCTTGTTCCCGGTTAGGAACAAATTTGGTTGTTTTCATTTTTCAGTTTGTTTCAGTTGTGTTGCAAATCCA  AAAAAAAAA ]




>consensus_12804#0
CGACGTTGTGGCGACACGGCTTCGGGTTTGGATGGACACGTGGACTGGGACGGGGAGGAG
TGTTGGTGACGGGGAGGAGATAGGGGGGAAGTGAAGGAGATGATGGCCGACGCCGGCGTG
CGGGAGAAGGCGGCCAAGGTCGGCGAGGAGGTGTCCAAGGCGGTGGCCGTCGGCGGCACG
AGCCACACGGGCATCCTGGATTTCGTCGCCAAGCTCAAGGCTGCAACTTAAGCACTTCTC
TCTCGTGTTCGTCTGAGAAGAAATATCTACTGCTACATAATTCCTCCTTCAATGTCACAT
ATAAGTGTACACAGTGAAAGGAGGGAGTGTGATAAATAAAAGCACCTCTCGTGTGTGCGG
CTATGCGTAGTTTGGGATTGAAAAAGGCCATTTCCCATTGGCAGTTTGGCACCCACCAAG
CTCCTCCTTGTTCCCGGTTAGGAACAATTTGGTTGTTTTCATTTTTCAGTTTGTTTCAGT
TGTGTTGCAATCTATTAAAAAAAAAA

consensusID : consensus_12804#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 503
fasta sequence

                              [CCTATAGCAACTGGTCCGGCCCCCTCAGGTCGCGGTATCGATAACTTATANGAATCCGGCCGCTGAGATA----GGGGAAGGTGAA-GAGATGATGGCCGACGCCGGC--GT-CGGGAGAA-GCGGCCAA-GGTCG-GCGAGGAGGTG-TCCAA-GGCGGTG--G-CGTCGGCGGCACGA-GCCACA-CGGGCATCCTGGATTTCGTCGCCAAGCTCAAGGCTGCAACTTAAGCATTCTCTCTCGTGTTCGTCTGAGAAGAAATATCTACTGCTACATAATTCCT-CCT-T-CAATGT-CACAT-AT-AAGT-GT-ACAAGTGAAAGGAGGGAGTGTGATAAATAAAAGCACTCTCGTGTGTGCGGCTATGCGTAGTTTGGGATTGAAAAAGGCC-ATTTCC-ATTGGCAGTTTGGCACCACCAAAGCTCCTCCTTGTTCCCGGTTAGGAACAAATTTGGTTGTTTTCATTTTTCAGTTTGTTTCAGTTGT-GTTGCAAATCTATTGTCTTGGATTCACCCCAAAAAAAAAA]

[-] EMBL OS37981              [CCTATAGCAACTGGTCCGGCCCCCTCAGGTCGCGGTATCGATAACTTATANGAATCCGGCCGCTGAGATA    GGGGAAGGTGAA GAGATGAT GCCGACGCC GC  GT CCGGAGAA GCGGCCAA GGTCG GCGAGGAGGTG  CCAA GGCGGTG  G CGTCGGCGGCACGA GCCACA CGGGCATCCTGGATTTCGTCGCCAAGCTCAAGGCTACAACTTAAGCATTCTCTCTCGTGTTCGTCTGAGAATAAATATCTAGTGCTACATAATTCCT CCT T CAATGT CACAT AT AAGT GT ATAAGTGAAAGGAGGGAGTGTGATAAATAAAAGCACTCTCGTGTGTGCG                                                                                                                                                                       ]
[+] EMBL BQ906993             [                                                          gggagTGAGATATGNGGGGGAAGGTGAAGGAGATGATGGCCGACGCCGGCGTGT CGGGAGAAGGCGGCCAATGGTCGNGCGAGGAGGTGTTCCAATGGCGGTGNNC CGTCGGCGGCACGATGCCACACCGGGCATCCTGGATTTCGTCGCCAAGCTCAAGGCTGCAACTTAAGCATTCTCTCTCGTGTTCGTCTGAGAAGAAATATCTACTGCTACATAATTCCT CCT T CAATGT CACAT AT AAGT GT ACAAGTGAAAGGAGGGAGTGTGATAAATAAAAGCACTCTCGTGTGTGCGGCTATGCGTAGTTTGGGATTGAAAAAGGCC ATTTCCAATTGGCAGTTTGGCACCACCAAAGCTCCTCCTTGTTCCCGGTTAGGAACAAATTTGGTTGTTTTCATTTTTCAGTTTGTTTCAGTTGT GTTGCAAATCTATTGTCTTGGATTCACCCCAAAAAAAAAA]
[+] EMBL BQ907612             [                                                                                  aatg GAGATGATGGCCGACGCCGGC  GTGCGGGAGAA GGCGCCAA GGTCG GCGAGGAGGTG TCCAA GGCGGTG  GCCGTCGGCGGCACGA GCCACA CGGGCATCCTGGATTTCGTCGCCAAGCTCAAGGCTGCAACTTAAGCATTCTCTCTCGTGTTCGTCTGAGAAGAAATATCTACTGCTACATAATTCCT CCT T CAATGT CACAT AT AAGT GT ACAAGTGAAAGGAGGGAGTGTGATAAATAAAAGCACTCTCGTGTGTGCGGCTATGCGTAGTTTGGGATTGAAAAAGGCCAATTTCC ATTGGCAGTTTGGCACCACC AAGCTCCTCCTTGTTCCCGGTTAGGAAC AATTTGGTTGTTTTCATTTTTCAGTTTGTTTCAGTTGT GTTGC AATCTATTGTCTTGGATTCACCCCAAAA      ]
[+] EMBL BQ906194             [                                                                                          ATGATGGCCGACGCCGGC  GTGCGGGAGAAGGCGGCCAA GGTCG GCGAGGAGGTG TCCAA GGCGGTG  GCCGTCGGCGGCACGA GCCACA CGGGCATCCTGGATTTCGTCGCCAAGCTCAAGGCTGCAACTTAAGCATTCTCTCTCGTGTTCGTCTGAGAAGAAATATCTACTGCTACATAATTCCT CCT T CAATGT CACAT AT AAGT GT ACAAGTGAAAGGAGGGAGTGTGATAAATAAAAGCACTCTCGTGTGTGCGGCTATGCGTAGTTTGGGATTGAAAAAGGCCAATTTCC ATTGGCAGTTTGGCACCACCAAAGCTCCTCCTTGTTCCCGGTTAGGAACAAATTTGGTTGTTTTCATTTTTCAGTTTGTTTCAGTTGTCNTTGCAAATCTATTGTCTTGGATTCAaaaaa         ]
[+] EMBL BQ907755             [                                                                                                                                                                                                                                                                                 tgaagtgtgCCTGCCTGTGCAATGTGCACATAATNAAGTGGTGACAAGTGAAAGGAGGGAGTGTGATAAATAAAAGCACTCTCGTGTGTGCGGCTATGCGTAGTTTGGGATTGAAAAAGGCC ATTTCC ATTGGCAGTTTGGCACCACCAAAGCTCCTCCTTGTTCCCGGTTAGGAACAAATTTGGTTGTTTTCATTTTTCAGTTTGTTTCAGTTGT GTTGCAAATCTATTGTCTTGGATTCACCCCAAAAA     ]




>consensus_12804#1
CCTATAGCAACTGGTCCGGCCCCCTCAGGTCGCGGTATCGATAACTTATANGAATCCGGC
CGCTGAGATAGGGGAAGGTGAAGAGATGATGGCCGACGCCGGCGTCGGGAGAAGCGGCCA
AGGTCGGCGAGGAGGTGTCCAAGGCGGTGGCGTCGGCGGCACGAGCCACACGGGCATCCT
GGATTTCGTCGCCAAGCTCAAGGCTGCAACTTAAGCATTCTCTCTCGTGTTCGTCTGAGA
AGAAATATCTACTGCTACATAATTCCTCCTTCAATGTCACATATAAGTGTACAAGTGAAA
GGAGGGAGTGTGATAAATAAAAGCACTCTCGTGTGTGCGGCTATGCGTAGTTTGGGATTG
AAAAAGGCCATTTCCATTGGCAGTTTGGCACCACCAAAGCTCCTCCTTGTTCCCGGTTAG
GAACAAATTTGGTTGTTTTCATTTTTCAGTTTGTTTCAGTTGTGTTGCAAATCTATTGTC
TTGGATTCACCCCAAAAAAAAAA

consensusID : consensus_12804#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 431
fasta sequence

                              [GCGACGTCGACATCCCCGGTGTGCGTCGCCTCAAGAGGTCCTGGCTGCCGCAGCCATTGCTCGACCTGAACAAGCTCTTCACGAAGCAGTTCATCGAGAACGGCCGGGAGATGGTCAAGACCGACGGCGTTCTGATCAACTTAAGCATTCTCTCTCGTGTTCGTCTGAGAATAAATATCTACTGCTACATAATTCCTCCTTCAATGTCACGTATAAGTGTACAAGTGAAAGGAGGGAGTGTGATAAATAAAAGCACTNTCGTGTGTGCGGCTATGCGTAGTTTGGGATTGAAAAAGGCCAATTTCCAATTGGCACCACCAAAGCTCCTCCTTGTTCCCGGTTAGGAACAAATTTGGTTGTTTTCATTTTTCAGTTTGTTTCAGTTGTGTTGCAAATCTATTGTCTTGGATTCTCCCCAAAAAAAAAAAAAA]

[+] EMBL AU173992             [GCGACGTCGACATCCCCGGTGTGCGTCGCCTCAAGAGGTCCTGGCTGCCGCAGCCATTGCTCGACCTGAACAAGCTCTTCACGAAGCAGTTCATCGAGAACGGCCGGGAGATGGTCAAGACCGACGGCGTTCTGATCAACTTAAGCATTCTCTCTCGTGTTCGTCTGAGAATAAATATCTACTGCTACATAATTCCTCCTTCAATGTCACGTATAAGTGTACAAGTGAAAGGAGGGAGTGTGATAAATAAAAGCACTNTCGTGTGTGCGGCTATGCGTAGTTTGGGATTGAAAAAGGCCAATTTCCAATTGGCACCACCAAAGCTCCTCCTTGTTCCCGGTTAGGAACAAATTTGGTTGTTTTCATTTTTCAGTTTGTTTCAGTTGTGTTGCAAATCTATTGTCTTGGATTCTCCCCAAAAAAAAAAAAAA]
[+] EMBL AU096307             [                                                                                                                                                            GTGTTCNTCTGAGAATAAATATCTACTGCTACATAATTCCTCCTTNAATGTCACGTATAAGTGTACANGTGAAAGGAGGGAGTGTGATAAATANAAGCACTCTCGTGTGTGCGGNTATGCGTAGTTTGGGATTGNAAAAGGCCAATTTCCAATTGGCACCACCAAAGCTCCTCNTTGTTCCCGGTTAGGAACAAATTTGGTTGTTTTNATTTTTCAGTTTGTTTCAGTTGTGTTGCAAATCTATTGTCTTGGATTCTCCCCAAAAAAAAAAAAAA]




>consensus_12804#2
GCGACGTCGACATCCCCGGTGTGCGTCGCCTCAAGAGGTCCTGGCTGCCGCAGCCATTGC
TCGACCTGAACAAGCTCTTCACGAAGCAGTTCATCGAGAACGGCCGGGAGATGGTCAAGA
CCGACGGCGTTCTGATCAACTTAAGCATTCTCTCTCGTGTTCGTCTGAGAATAAATATCT
ACTGCTACATAATTCCTCCTTCAATGTCACGTATAAGTGTACAAGTGAAAGGAGGGAGTG
TGATAAATAAAAGCACTNTCGTGTGTGCGGCTATGCGTAGTTTGGGATTGAAAAAGGCCA
ATTTCCAATTGGCACCACCAAAGCTCCTCCTTGTTCCCGGTTAGGAACAAATTTGGTTGT
TTTCATTTTTCAGTTTGTTTCAGTTGTGTTGCAAATCTATTGTCTTGGATTCTCCCCAAA
AAAAAAAAAAA

consensusID : consensus_12804#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 269
fasta sequence

                              [CGAAGCAGTTCATCGAGAACGGCCGGGAGATGGTCAAGACCGACGGCGTTCTGATCAACACGTTCGACGCGCTGGAGCCGGTGGCGCTCGCCGCCCTCCGCGACGGCAAGGTCGTCCGCGGGTTCCCGCCGGTGTTCGCCGTNGGCCCGCACAGCTCCCTGGCGAGCGAGGCGACGNNCGTCGTGCCGCTGCTGGCGTGGCCGCGGGGCGCGACCACCGCGTGGCGGCGACGGTGGTGGCGAGCAGCGNCGTCGTGGTGTGGATGGAGC]

[+] EMBL OSC8901              [CGAAGCAGTTCATCGAGAACGGCCGGGAGATGGTCAAGACCGACGGCGTTCTGATCAACACGTTCGACGCGCTGGAGCCGGTGGCGCTCGCCGCCCTCCGCGACGGCAAGGTCGTCCGCGGGTTCCCGCCGGTGTTCGCCGTNGGCCCGCACAGCTCCCTGGCGAGCGAGGCGACGNNCGTCGTGCCGCTGCTGGCGTGGCCGCGGGGCGCGACCACCGCGTGGCGGCGACGGTGGTGGCGAGCAGCGNCGTCGTGGTGTGGATGGAGC]




>consensus_12804#3
CGAAGCAGTTCATCGAGAACGGCCGGGAGATGGTCAAGACCGACGGCGTTCTGATCAACA
CGTTCGACGCGCTGGAGCCGGTGGCGCTCGCCGCCCTCCGCGACGGCAAGGTCGTCCGCG
GGTTCCCGCCGGTGTTCGCCGTNGGCCCGCACAGCTCCCTGGCGAGCGAGGCGACGNNCG
TCGTGCCGCTGCTGGCGTGGCCGCGGGGCGCGACCACCGCGTGGCGGCGACGGTGGTGGC
GAGCAGCGNCGTCGTGGTGTGGATGGAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12804#0      CGACGTTGTGGCGACACGGCTTCGGGTTTGGATGGACACGTGGACTGGGACGGGGAGGAG 60
consensus_12804#1      ----CCTATAGCAAC--TGGTCCGGCCCCCTCAGGTCGCGGTATCGATAACTTATANGAA 54
consensus_12804#2      --------------------------------------------------------GCGA 4
consensus_12804#3      ------------------------------------------------------------
                                                                                   

consensus_12804#0      TGTTGGTGACGGGGAGGAGATAGGGGGGAAGTGAAGGAGATGATGGCCGACGCCGGCGTG 120
consensus_12804#1      TCCGGCCGCTG------AGATAGGGGA-AGGTGAAG-AGATGATGGCCGACGCCGGCGT- 105
consensus_12804#2      CGTCGACATCCC-----CGGTGTGCGTCGCCTCAAG-AGGTCCTGGCTGCCGCAGCCAT- 57
consensus_12804#3      ------------------------------------------------------------
                                                                                   

consensus_12804#0      CGGGAGAAGGCGGCCAAGGTCGGCGAGGAGGTGTCCAAGGCGGTGGCCGTCGGCGGCACG 180
consensus_12804#1      CGGGAGAAG-CGGCCAAGGTCGGCGAGGAGGTGTCCAAGGCGGTGGC-GTCGGCGGCACG 163
consensus_12804#2      -TGCTCGACCTGAACAAGCTCTTCACGAAGCAGTTCA--TCGAGAACGGCCGG-GAGATG 113
consensus_12804#3      -------------------------CGAAGCAGTTCA--TCGAGAACGGCCGG-GAGATG 32
                                                 * **  ** **   **    * * *** *  * *

consensus_12804#0      AGCCACACGGGCATCCTGGATTTCGTCGCCAAGCTCAAGGCTGCAACTTAAGCACTTCTC 240
consensus_12804#1      AGCCACACGGGCATCCTGGATTTCGTCGCCAAGCTCAAGGCTGCAACTTAAGCA-TTCTC 222
consensus_12804#2      GTCAAGACCGACGGCGT---TCTGATC-----------------AACTTAAGCA-TTCTC 152
consensus_12804#3      GTCAAGACCGACGGCGT---TCTGATCAACACGTTCGACGC----GCTGGAGCCGGTGGC 85
                         * * ** * *  * *   * *  **                   **  ***   *  *

consensus_12804#0      TCTCGTGTTCGTCTGAGAAGA-AATATCTACTGCTACATAATTCCTCCTTCAATGTCACA 299
consensus_12804#1      TCTCGTGTTCGTCTGAGAAGA-AATATCTACTGCTACATAATTCCTCCTTCAATGTCACA 281
consensus_12804#2      TCTCGTGTTCGTCTGAGAATA-AATATCTACTGCTACATAATTCCTCCTTCAATGTCACG 211
consensus_12804#3      GCTCGCCGCCCTCCGCGACGGCAAGGTCGTCCGCGG----GTTCC--CGCCGGTGTTCGC 139
                        ****    * ** * **    **  **  * **       ****  *  *  ***    

consensus_12804#0      TATAAGTGTACACAGTGAAAGGAGGGAGTGTGATAAATAAAAGCACCTCTCGTGTGTGCG 359
consensus_12804#1      TATAAGTGTACA-AGTGAAAGGAGGGAGTGTGATAAATAAAAGCAC-TCTCGTGTGTGCG 339
consensus_12804#2      TATAAGTGTACA-AGTGAAAGGAGGGAGTGTGATAAATAAAAGCAC-TNTCGTGTGTGCG 269
consensus_12804#3      CGTNGGCCCGCACAGCTCCCTG-GCGAGCGAGGCGAC-----GNNC--GTCGTGC-CGCT 190
                         *  *    ** **      * * *** * *   *      *  *   *****   ** 

consensus_12804#0      GCTATGCGTAGTTTGGGATTGAAAAAGGCCATTTCCCATTGGCAGTTTGGCACCCACCAA 419
consensus_12804#1      GCTATGCGTAGTTTGGGATTGAAAAAGGCCATTTCC-ATTGGCAGTTTGGCACCACCAAA 398
consensus_12804#2      GCTATGCGTAGTTTGGGATTGAAAAAGGCCAATTTC------CAATT-GGCACCACCAAA 322
consensus_12804#3      GCTG-GCGTGGCCGCGGGGCGCGA----CCACCGCGTGGCGGCGAC--GGTGGTGGCGAG 243
                       ***  **** *    **   *  *    ***           *     **      * * 

consensus_12804#0      GCTCCTCCTTGTTCCCGGTTAGGAACAA-TTTGGTTGTTTTCATTTTTCAGTTTGTTTCA 478
consensus_12804#1      GCTCCTCCTTGTTCCCGGTTAGGAACAAATTTGGTTGTTTTCATTTTTCAGTTTGTTTCA 458
consensus_12804#2      GCTCCTCCTTGTTCCCGGTTAGGAACAAATTTGGTTGTTTTCATTTTTCAGTTTGTTTCA 382
consensus_12804#3      CAGCGNCGTCGTGGTGTGGATGGAGC---------------------------------- 269
                          *  * * **     *   *** *                                  

consensus_12804#0      GTTGTGTTGCAA-TCTATT----------------AAAAAAAAAA---- 506
consensus_12804#1      GTTGTGTTGCAAATCTATTGTCTTGGATTCACCCCAAAAAAAAAA---- 503
consensus_12804#2      GTTGTGTTGCAAATCTATTGTCTTGGATTCTCCCCAAAAAAAAAAAAAA 431
consensus_12804#3      -------------------------------------------------