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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12814#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 675 fasta sequence
[GAGTCTCTTAGCGAGGAGAGACGAGGCG-AGAGGAGAGGAGAGGCGCCGCCGCGGCGAGGAGAGCGAGAATCGGAAGGCGATGGGCAACGCCGGGAGCTCGCCGGAGCAGGCCGCCGGCAAT-AATAAGGAGGACGCGGAGGCCC-GCCGCCAGCC-GCCGTC-CACCGTGC-GATTCTACCCCAGCGCCGACCAGCCCAAGGCCAGGCAGCCGC-CGCCCATCAAGCTGGAGGAGGAGGACGTGCCCC-CTCC-GCC-CGTCGCCGACGAGGAGATGGC---CCCCCGCAACCTC-TGGCAGGTTTATGCTCTTGGAGCGTTTATTGTGTTGAGATGGGCCTGGGTTAAGTGGAAAGAAAGCAAGGAAAGAGATGATTCGC-CTGATGGCC-GA-TCCCCGGACGGGTCTTCTT-AGTTTGC-TCCAGAAAGCTTTAGTCTCTGC-TTTAAATCCTAAGAAGATAAAGATGTTGTGCGATGATGGTGCACCTCTCTAATCTATGTCCATCTGATTAGAGTTTTTCTTCC-CCGTCATTGTTGCCTTGTGTTTGGATTCTGTATTTGCCCATCATGCGCAAGTGACTTCCTTTTCCTTGCTGTCATGTTAGAACTTGCAATATCTTTAAGTGAAAGGCTTGTAGTAAAAGTAAAAGACCTC-TTTTAATACTACCATCCATGATCCACCTCCAAAAA]
[+] EMBL AK103338 [GAGTCTCTTAGCGAGGAGAGACGAGGCG AGAGGAGAGGAGAGGCGCCGCCGCGGCGAGGAGAGCGAGAATCGGAAGGCGATGGGCAACGCCGGGAGCTCGCCGGAGCAGGCCGCCGGCAAT AATAAGGAGGACGCGGAGGCCC GCCGCCAGCC GCCGTC CACCGTGC GATTCTACCCCAGCGCCGACCAGCCCAAGGCCAGGCAGCCGC CGCCCATCAAGCTGGAGGAGGAGGACGTGCCCC CTCC GCC CGTCGCCGACGAGGAGATGGC CCCCCGCAACCTC TGGCAGGTTTATGCTCTTGGAGCGTTTATTGTGTTGAGATGGGCCTGGGTTAAGTGGAAAGAAAGCAAGGAAAGAGATGATTCGC CTGATGGCC GA TCCCCGGACGGGTCTTCTT AGTTTGC TCCAGAAAGCTTTAGTCTCTGC TTTAAATCCTAAGAAGATAAAGATGTTGTGCGATGATGGTGCACCTCTCTAATCTATGTCCATCTGATTAGAGTTTTTCTTCC CCGTCATTGTTGCCTTGTGTTTGGATTCTGTATTTGCCCATCATGCGCAAGTGACTTCCTTTTCCTTGCTGTCATGTTAGAACTTGCAATATCTTTAAGTGAAAGGCTTGTAGTAAAAGTAAAAGACCTC TTTTAATACTACCATCCATG ]
[+] EMBL OSC3081 [ GACGAGGCG AGAGGAGAGGAGAGGCGCCGCCGCGGCGAGGAGAGCGAGAATCGGAAGGCGATGGGCAACG CGGGAGCTCGCCGGAGCAGGCCGCCGGCAAT AATAAGGAGGACGCGGAGGCCC GCCGCCAGCC GCCGTC CACCGTGC GATTCTACCCCAGCGCCGACCAGCCCAAGGCCAGGCAGCCGC CGCCCATCAAGCTGGAGGAGGAGGACGTGCCCC CTNC GTC CGTCGCCGACGAGGAGATGGC CCCCCGNAACCTC TGGCAGGTTTATG TCTTGGAGCGTTTATTGTGTTGAGATGGG CTGGGTTAAGTGGAAAGAAAGCAAGGAAAGAGATGAT ]
[+] EMBL OSC2761 [ GACGAGGCG AGAGGAGAGGAGAGGCGCCGCCGCGGCGAGGAGAGCGAGAATCGGAAGGCGATGGGCAACG CGGGAGCTCGCCGGAGCAGGCCGCCGGCAAT AATAAGGAGGACGCGGAGGCCC GCCGCCAGCC GCCGTC CACCGTGC GATTCTACCCCAGCGCCGACCAGCCCAAGGCCAGGCAGCCGC CGCCCATCAAGCTGGAGGAGGAGGACGTGCCCC CTCC GCC CGTCGCCGACGTGGAGATGGC CCCCCGCAACCTCTTGGCAGGTTTATGCTCTTGGAGCGTTTATTGTGTTGAGATGGGCCTTGGTTAAGTGGAAAGAAAGCAAGGAAAGAGATGATTCGC TTGATTGCC GATTCCCCGGACGGGTCTTCTTAAGTTTTCTTCCAG AAGTTTAAGTNTCTGCTTTTAAATCCTAAGAAGTTAAAGATTTTtt ]
[+] EMBL AU094555 [ ACGAGGCG AGAGGAGAGGAGAGGCGCCGCCGCGGCGAGGAGAGCGAGAATCGGAAGGCGATGGGCAACGCCGGGAGCTCGCCGGAGCAGGCCGCCGGCAAT AATAAGGAGGACGCGGAGGCCC GCCGCCAGCC GCCGTC CACCGTGC GATTCTACCCCAGCGCCGACCAGCCCAAGGCCAGGCAGCCGC CGCCCATCAAGCTGGAGGAGGAGGACGTGCCCC CTCC GCC CGTCGCCGACGAGGAGATGGC CCCCCGCAACCTC TGGCAGGTTTATGCTCTTGGAGCGTTTATTGTGTTGAGATGGGCCTGGGTTAAGTGGAAAGAAAGCAAGGAAAGAGATGATTCGC CTGATGGCC GA TCCCCGGACGGGTCTTCTT AGTTTGC TCCAGAAAGCTTTAGTCTCTGC TTTAAATCCTAAGAAGATAAAGATGTTGTGCGATGATGGTGCACCTCTCTAATCTATGTCCATCTGATTAGAGTTTTTCTTCC CCGTCATTGTTGCCTTGTGTTTGGATTCTGTATTTGCCCATCATGCGCAAGTGACTTCCTTTTCCTTGCTGTCATGTTAGAACTTGCAATATCTTTAAGTGAAAGGCTTGTAGTAAAAaa ]
[+] EMBL AU164034 [ CGA GCGAAGAGGAGAGGAGAGGCGCCGCCGCGGCGAGGAGAGCGAGAATCGGAAGCCGATGGGCAACGCCGGGAGCTCGCCGGAGCAGGCCGCCGGCAAT AATAAGGAGGACGCGAAGGCCC GCCGCCAGCC GCCGTC CACCGTGC GATTCTACCCCAGCGCCGACCAGCCCAAGGCCAGGCAGCCGC CGCCCATCAAGCTGGAGGAGGAGGACGTGCCCC CTCC GCC CGTCGCCGACGTGGAGATGGC CCCCCGCAACCTC TGGCAGGTTTATGCTCTTGGAGCGTTTATTGTGTTGAGATGGGCCTGGGTTAAGTGGAAAGAAAGCAAGGAAAGAGATGATTCGC CTGATGGCC GA TCCCCGGACGGGTCTTCTT AGTTTGC TCCAGAAAGCTTTAGTCTCTGC TTTAAATCCTAAGAAGATAAAGATGTTGTGCGATGATGGTGCACCTCTCTAATCTATGTCCATCTGATTAGAGTTTTTCTTCC CCGTCATTGTTGCCTTGTGTTTGGATTCTGTATTTGCCCATCATGCGCAAGTGACTTCCTTTTCCTTGCTGTCATGTTAGAACTTGCAATATCTTTAAGTGAAAGGCTTGTAGTAAAAGTAAAAGACCTC TTTTAATACTAaaaaaa ]
[+] EMBL C26925 [ AGAGGAGAGGCGCCGCCGCGGCGAGGAGAGCNAGAATCGGAAGGCGATGGGCAACG CGGGAGCTCGCCGGAGCAGGCCGCCGGCAAT AATAAGGAGGACGCGGAGGCCC GCCGCCAGCC GCCGTC CACCGTGC NATTCTACCCCAGCGCCGACCAGCCCAAGGCCAGGCAGCCGC CGCCCATCAAGCTGGAGGAGGAGGACGTGCCCC CTCC GCC CGTCGCCGACGAGGAGATGGC CCCCCGCAACCTC TNGCAGGTTTATNCTCTTGGAGCGT ]
[+] EMBL BI797316 [ CGGA CA GCC CC GCAATAAATAAGGAGGACGCGGAGGCCCAGCCACCAACCAGCCGTCACACCGTGCAGATTCTACCCCAGCGCCGACCAGACCAAGGCCA GCA CCGC CGCCCATCAAGCTGGAGGAGGAGGACGTGCCCCACTCC GCCACGTCGCCGACGAGGAGATGGCACACCCCAGCAACCTC TGGCAGGTTTATGCTCTTGGAGCGTTTATTGTGTTGAGATGGGCCTGGGTTAAGTGGAAAGAAAGCAAGGACAGAGATGATTCGCACTGATGGCCAGA TCCCCGGACGGGTCTTCTT AGTTTGC TCCAGAAAGCTTTAGTCTCTGC TTTAAATCCTAAGAAGATAAAGATGTTGTGCGATGATGGTGCACCTCTCTAATCTATGTCCATCTGATTAGAGTTTTTCTTCCACCGTCATTGTTGCCTTGTGTCTGGATTCTGTATTTGCCCATCATGCGCAAGTGACTTCCTTTTCCTT CTGTCATGTTAGAACTT CAATATCTTTAA TGAAAGGCTTGTAGTAAAAGTAAAAGACCTC TTTAATACTACCATCCATGATCCACCTCCAAAA ]
[+] EMBL C97001 [ TGC GATTTTACCCCAGCGCCGACCAGCCCAAGGCCAGGCAGCCGC CGCCNATCAAGCTGGAGGAGGAGGACGTGCCCC CTCC GCC CGTCGCCGACGAGGAGATGGC CCCCCGCAACCTC TGGCAGGTTTATGCTCTTGGAGCGTTTATTGTGTTGAGATGGGCCTGGGTTAAGTGGAAAGAAAGCAAGGAAAGAGATGATTCGC CTGATGGCC GA TCCCCGGACGGGTCTTCTT AGTTTGC TCCAGAAAGCTTTAGTCTCTGC TTTAAATCCTAAGAAGATAAAGATGTTGTGCGATGATGGTGCACCTCTCTAATCTATGTCCATCTGATTAGAGTTTTTCTTCC CCGTCATTGTTGCCTTGTGTTTGGATTCTGTATTTGCCCATCATGCGCAAGTGACTTCCTTTTCCTTGCTGTCATGTTAGAACTTGCAATATCTTTAAGTGAAAGGCTTGTAGTAAAAGTAAAAGACCTC TTTTAATACTACCATCCATGATCCAACTGCAAAAA]
[+] EMBL BI795120 [ cgCAAGGCCAGGCAGCCGCACGCCCATCAAGCTGGAGGAGGAGGACGTGCCCC CTCCAGCC CGTCGCCGACGAGGAGATGGC CCCCCGCAACCTC TGGCAGGTTTATGCTCTTGGAGCGTTTATTGTGTTGAGATGGGCCTGGGTTAAGTGGAAAGAAAGCAAGGACAGAGATGATTCGC CTGATGGCC GA TCCCCGGACGGGTCTTCTT AGTTTGC TCCAGAAAGCTTTAGTCTCTGC TTTAAATCCTAAGAAGATAAAGATGTTGTGCGATGATGGTGCACCTCTCTAATCTATGTCCATCTGATTAGAGTTTTTCTTCC CCGTCATTGTTGCCTTGTGTCTGGATTCTGTATTTGCCCATCATGCGCAAGTGACTTCCTTTTCCTTGCTGTCATGTTAGAACTTGCAATATCTTTAAGTGAAAGGCTTGTAGTAAAAGTAAAAGACCTC TTTTAATACTAaaaa ]
[+] EMBL BI796555 [ GGCCTGGGTTAAGTGGAAAGAAAGCAAGGACAGAGATGATTCGC CTGATGGCC GA TCCCCGGACGGGTCTTCTT AGTTTGC TCCAGAAAGCTTTAGTCTCTGC TTTAAATCCTAAGAAGATAAAGATGTTGTGCGATGATGGTGCACCTCTCTAATCTATGTCCATCTGATTAGAGTTTTTCTTCC CCGTCATTGTTGCCTTGTGTCTGGATTCTGTATTTGCCCATCATGCGCAAGTGACTTCCTTTTCCTTGCTGTCATGTTAGAACTTGCAATATCTTTAAGTGAAAGGCTTGTAGTAAAAGTAAAAGACCTCTTTTTAATAaaaaa ]
consensusID : consensus_12814#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 161 fasta sequence
[ATCTGATTAGAGTTTTTCTTCCCCGTCATTGTTCCTTGTGTCTGGATTCTGTATTTTTGCCCCCATTCATGCCCACAAGGTTTTGACTTTTTCCTTTTCCTTGCTGTCATGTTAGAACTTCATATCTTTAAGTGAAAGGCTTGTAGTAAAAGTAAAAGACC]
[+] EMBL BI798898 [ATCTGATTAGAGTTTTTCTTCCCCGTCATTGTTCCTTGTGTCTGGATTCTGTATTTTTGCCCCCATTCATGCCCACAAGGTTTTGACTTTTTCCTTTTCCTTGCTGTCATGTTAGAACTTCATATCTTTAAGTGAAAGGCTTGTAGTAAAAGTAAAAGACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12814#0 GAGTCTCTTAGCGAGGAGAGACGAGGCGAGAGGAGAGGAGAGGCGCCGCCGCGGCGAGGA 60
consensus_12814#1 ------------------------------------------------------------
consensus_12814#0 GAGCGAGAATCGGAAGGCGATGGGCAACGCCGGGAGCTCGCCGGAGCAGGCCGCCGGCAA 120
consensus_12814#1 ------------------------------------------------------------
consensus_12814#0 TAATAAGGAGGACGCGGAGGCCCGCCGCCAGCCGCCGTCCACCGTGCGATTCTACCCCAG 180
consensus_12814#1 ------------------------------------------------------------
consensus_12814#0 CGCCGACCAGCCCAAGGCCAGGCAGCCGCCGCCCATCAAGCTGGAGGAGGAGGACGTGCC 240
consensus_12814#1 ------------------------------------------------------------
consensus_12814#0 CCCTCCGCCCGTCGCCGACGAGGAGATGGCCCCCCGCAACCTCTGGCAGGTTTATGCTCT 300
consensus_12814#1 ------------------------------------------------------------
consensus_12814#0 TGGAGCGTTTATTGTGTTGAGATGGGCCTGGGTTAAGTGGAAAGAAAGCAAGGAAAGAGA 360
consensus_12814#1 ------------------------------------------------------------
consensus_12814#0 TGATTCGCCTGATGGCCGATCCCCGGACGGGTCTTCTTAGTTTGCTCCAGAAAGCTTTAG 420
consensus_12814#1 ------------------------------------------------------------
consensus_12814#0 TCTCTGCTTTAAATCCTAAGAAGATAAAGATGTTGTGCGATGATGGTGCACCTCTCTAAT 480
consensus_12814#1 ------------------------------------------------------------
consensus_12814#0 CTATGTCCATCTGATTAGAGTTTTTCTTCCCCGTCATTGTTGCCTTGTGTTTGGATTCTG 540
consensus_12814#1 --------ATCTGATTAGAGTTTTTCTTCCCCGTCATTGTT-CCTTGTGTCTGGATTCTG 51
********************************* ******** *********
consensus_12814#0 TATTT--GCCCA---TCATGC--GCAAG----TGACTT---CCTTTTCCTTGCTGTCATG 586
consensus_12814#1 TATTTTTGCCCCCATTCATGCCCACAAGGTTTTGACTTTTTCCTTTTCCTTGCTGTCATG 111
***** **** ****** **** ****** *******************
consensus_12814#0 TTAGAACTTGCAATATCTTTAAGTGAAAGGCTTGTAGTAAAAGTAAAAGACCTCTTTTAA 646
consensus_12814#1 TTAGAACTT--CATATCTTTAAGTGAAAGGCTTGTAGTAAAAGTAAAAGACC-------- 161
********* ****************************************
consensus_12814#0 TACTACCATCCATGATCCACCTCCAAAAA 675
consensus_12814#1 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||