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Oryza sativa
cluster # 12818 cluster # 12818       Sequences # 11       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12818#0 length = 1272 sequences # 9  
consensus_12818#1 length = 533 sequences # 1  
consensus_12818#2 length = 472 sequences # 1  

consensusID : consensus_12818#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1272
fasta sequence
                              [TCTCCACGCTTTACAACTCAACCCCCGCACCACCACCAGTCCACCACCACAATCCCAGGGCGGCGCCGCGGCCGGCA-ATGGCGGGCGGCGGCGGCGAGTACCTGCGCCAGTTCGTCGAGGAGACGGCCTGGTACAACGAGATCTTCCTCAGCCATGTGGTCCCGGGCGACTGGTGGCGCGCCCTCCCCCACCCGCTCCAGTCGTGGCTCCGCAACGGCCTCGGCGGCTACCTCATCTACTTCGCCTGCGGCTTCCTCTGGTGCTTCGTCATCTACTACTGGAAGCGCCACGCCTACATCCCCAAAGATTCTATACCTACAATCGAAGCTATGAAGAAGCAAATAATTGTTGCATCAAAGGCTATGC-CTCTCTATTGTGCCCTTCCAACCTTATCTGAGTACATGGTTGAGAATGGATGGACACAGTGTTATGTTAATATCAGTGAAGTT-GGTTGGCCAATGTACCT-GGTTTATCTGGCTTTATATCTTATCTTTGTTGAGTTTGGAATTTACTGGATGCACAGAGAGTTGCATGACATAAAGCCATTGTACAAGTACCTGCACACATACCACCATATTTACAACAAGGAGAATACCCTATCACCATTTGCAGGACTAGCATTCCATCCACTGGATGGGATTTTGCAAGCCATACCGCATGTGTTTGCGCTCTACCTTATCCCAACACACTTCAGGACACACATTGCTCTCTTGTTCATAGAGGCCGTGTGGACAACTAACATCCATGACTGCATTCACGGCAAGGTTTGGCCGGTCAT-GGGTGCTGGCTATCACACCATTCACCATACAACATACCGTCACAACTATGGCCACTACACCGTGTGGATGGACTGGATGTTCGGCACCCTTCGAGAGCCAGAAGATATCTTGAAGAAGGATTAGGATCGAATTGTTAAGCACGGCGCGACGTTCGCCTCTCGTCTTTGTAGCAGTCGGAAGAAGGGGGTTCTATGTATTTATCCTGCTCGATGCTATCTGTTATCTTTCATGTACCAATGTGCTGTTTCAGTATGCTAGGTGAACATAAAAGTGAACTTTAGTGAGTTCATCATCCCTGGAATGCAATGGAATCGAGAGATATATCCTGGGTAGGTTCCAGGTGTTTGTACCATTCCTGAATTTCTCTGTACTTCTTTGTGTCAAAGAACATGATGAACAGTTGTGGCCAGCTTTTGTACAGCAATAACTGTTTTATTGTAACTGCTGCCATCCTTTTGTNTCAAAANAAAATAAAAANAANAAACAAANCAAA]

[+] EMBL AK111908             [TCTCCACGCTTTACAACTCAACCCCCGCACCACCACCAGTCCACCACCACAATCCCAGGGCGGCGCCGCGGCCGGCA ATGGCGGGCGGCGGCGGCGAGTACCTGCGCCAGTTCGTCGAGGAGACGGCCTGGTACAACGAGATCTTCCTCAGCCATGTGGTCCCGGGCGACTGGTGGCGCGCCCTCCCCCACCCGCTCCAGTCGTGGCTCCGCAACGGCCTCGGCGGCTACCTCATCTACTTCGCCTGCGGCTTCCTCTGGTGCTTCGTCATCTACTACTGGAAGCGCCACGCCTACATCCCCAAAGATTCTATACCTACAATCGAAGCTATGAAGAAGCAAATAATTGTTGCATCAAAGGCTATGC CTCTCTATTGTGCCCTTCCAACCTTATCTGAGTACATGGTTGAGAATGGATGGACACAGTGTTATGTTAATATCAGTGAAGTT GGTTGGCCAATGTACCT GGTTTATCTGGCTTTATATCTTATCTTTGTTGAGTTTGGAATTTACTGGATGCACAGAGAGTTGCATGACATAAAGCCATTGTACAAGTACCTGCACACATACCACCATATTTACAACAAGGAGAATACCCTATCACCATTTGCAGGACTAGCATTCCATCCACTGGATGGGATTTTGCAAGCCATACCGCATGTGTTTGCGCTCTACCTTATCCCAACACACTTCAGGACACACATTGCTCTCTTGTTCATAGAGGCCGTGTGGACAACTAACATCCATGACTGCATTCACGGCAAGGTTTGGCCGGTCAT GGGTGCTGGCTATCACACCATTCACCATACAACATACCGTCACAACTATGGCCACTACACCGTGTGGATGGACTGGATGTTCGGCACCCTTCGAGAGCCAGAAGATATCTTGAAGAAGGATTAGGATCGAATTGTTAAGCACGGCGCGACGTTCGCCTCTCGTCTTTGTAGCAGTCGGAAGAAGGGGGTTCTATGTATTTATCCTGCTCGATGCTATCTGTTATCTTTCATGTACCAATGTGCTGTTTCAGTATGCTAGGTGAACATAAAAGTGAACTTTAGTGAGTTCATCATCCCTGGAATGCAATGGAATCGAGAGATATATCCTGGGTAGGTTCCAGGTGTTTGTACCATTCCTGAATTTCTCTGTACTTCTTTGTGTCAAAGAACATGATGAACAGTTGTGGCCAGCTTTTGTACAGCAATAACTGTTTTATTGTAACTGCTGCCATCCTT                                      ]
[+] EMBL AK112014             [        CTTTACAATTCAACCCCCGCACCACCACCAGTCCACCACCACAATCCCAGGGCGGCGCCGCGGCCGGCA ATGGCGGGCGGCGGCGGCGAGTACCTGCGCCAGTTCGTCGAGGAGACGGCCTGGTACAACGAGATCTTCCTCAGCCATGTGGTCCCGGGCGACTGGTGGCGCGCCCTCCCCCACCCGCTCCAGTCGTGGCTCCGCAACGGCCTCGGCGGCTACCTCATCTACTTCGCCTGCGGCTTCCTCTGGTGCTTCGTCATCTACTACTGGAAGCGCCACGCCTACATCCCCAAAGATTCTATACCTACAATCGAAGCTATGAAGAAGCAAATAATTGTTGCATCAAAGGCTATGC CTCTCTATTGTGCCCTTCCAACCTTATCTGAGTACATGGTTGAGAATGGATGGACACAGTGTTATGTTAATATCAGTGAAGTT GGTTGGCCAATGTACCT GGTTTATCTGGCTTTATATCTTATCTTTGTTGAGTTTGGAATTTACTGGATGCACAGAGAGTTGCATGACATAAAGCCATTGTACAAGTACCTGCACACATACCACCATACTTACAACAAGGAGAATACCCTATCACCATTTGCAGGACTAGCATTCCATCCACTGGATGGGATTTTGCAAGCCATACCGCATGTATTTGCGCTCTACCTTATCCCAACACACTTCAGGACACACATTGCTCTCTTGTTCATAGAGGCCGTGTGGACAACTAACATCCATGACTGCATTCACGGCAAGGTTTGGCCGGTCAT GGGTGCTGGCTATCACACCATTCACCATACAACATACCGTCACAACTATGGCCACTACACCGTGTGGATGGACTGGATGTTCGGCACCCTTCGAGAGCCAGAAGATATCTTGAAGAAGGATTAGGATCGAATTGTTAAGCACGGCGCGACGTTCGCCTCTCGTCTTTGTAGCAGTCGGAAGAAGGGGGTTCTATGTATTTATCCTGCTCGATGCTATCTGTTATCTTTCATGTACCAATGTGCTGTTTCAGTATGCTAGGTGAACATAAAAGTGAACTTTAGTGAGTTCATCATCCCTGGAATGCAATGGAATCGAGAGATATATCCTGGGTAGGTTCCAGGTGTTTGTACCATTCCTGAATTTCTCTGTACTTCTTTGTGTCAAAGAACATGATGAACAGTTGTGGCCAGCTTTTGTACAGCAATAACTGTTTTATTGTAACTGCTGCCATC                                         ]
[+] EMBL AU070031             [               ACTCAACCCCCGCACCACCACCAGTCCACCACCACAATCCCAGGGCGGNGCCGCGGCCGGCA ATGGCGGGCGGCGGCGGCGAGTACCTGCGCCAGTTCGTCGAGGAGACGGCCTGGTACAACGAGATCTTCCTCAGCCATGTGGTCCCGGGCGACTGGTGGCGCGCCCTCCCCCACCCGCTCCAGTCGTGGCTCCGCAACGGCCTCGGCGGCTACCTCATCTACTTCGCCTGCGGCTTCCTCTGGTGCTTCGTCATCTACTACTGGAAGCGCCACGGCTACATCCCCAAAGATTCTATACCTACAATCGAA NTATGAAGAAGCAAATAATTGTTGCATCAAAGGCTATGC CTCTCTATTGTGCCCTTCCAACCTTATCTGAGTACATGGTTGAGAATGGATGG CANAGTGTTATGTTAATATCAGTGAAGTT GGTTGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU068067             [                 TCAACCCCCGCACCACCACCAGTCCACCACCACAATCCCAGGGCGGCGCCGCGGCCGGCA ATGGCGGGCGGCGGCGGCGAGTACCTGCGCCAGTTCGTCGAGGAGACGGCCTGGTACAACGAGATCTTCCTCAGCCATGTGGTCCCGGGCGACTGGTGGCGCGCCCTCCCCCACCCGCTCCAGTCGTGGCTCCGCAACGGCCTCGGCGGCTACCTCATCTACTTCGCCTGCGGCTTCCTCTGGTGCTTCGTCATCTACTACTGGAAGCGCCACGCCTACATCCCCAAAGATTCTATACCTACAATCGAAGCTATGAAGAAGCAAATAATTGTTGCATCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU163003             [                                             ACCACAATCCCAGGGCNGCG CGCGGCCGGCANATNGCGGGCGGCNGCGANGNTNACCTGCGCCAGTTCGTCGAGGAGACGGCCTGGTACAACGAGATCTTCCTCAGCCATGTGGTCCCGGGCGACTGGTGGCGCGCCCTCCCCCACCCGCTCCAGTCGTGGCTCCGCAACGGCCTCGGCGGCTACCTCATCTACTTCGCCTGCGGCTTCCTCTGGTGCTTCGTCATCTACTACTGGAAGCGCCACGCCTACATCCCCAAAGATTCTATACCTACAATCGAAGCTATGAAGAAGCAAATAATTGTTGCATCAAAGGCTATGCTCT TCTATTGTGCCCTTCCAACNTTATCTGAGTACATGGTTGAGAATGGATGGACACAGTGTTATGTTAATATCAGTGAAGTTNGGTTGGCCAATGTACCTGGGTTTATCTGGCTTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL OSR07531A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ACTGGATGCACAGAGAGTTGCATGACATAAAGCCATTGTACAAGTACCTGCACACATACCACCATATTTACAACAAGGAGAATACCCTATCACCATTTGCAGGACTAGCATTCCATCCACTGGATGGGATTTTGCAAGCCATACCGCATGTGTTTGCGCTCTACCTTATCCCAACACACTTCAGGNCACACATTGCTCTCTTGTTCATAGAGGCCGTGTGGACAACTAACATCCATGACTGCATTCACGGCAAGGTTTGGCCGGTCAT GGGTGCTGGCTATCACACCATTCACCATACAACATACCGTCACAACTATGGCCACTACACCGTGTGGNTGGGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU031716             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CAGGACACACATTGCTCTCTTGTTCATAGAGNCCTTGTGGACAACTAACATCCATGACTGCATTCACGGCAAGGTTTGGCCGGTCATGGGGTGCTGGCTATCACACCATTCACCATNCAACATNCCGTCACAACTATGGCCACTACACCNTGTGGATGGACTGGATGTTCGGCACCCTTCGAGAGCCAGAAGATATCTTGAAGAAGGATTAGGATCGAATTGTTAAGCACGGCGCGACGTTCGCCTCTCGTCTTTGTAGCAGTCGGAAGAAGGGGGTTCTATGTATTTANCCTGCTCGATGCTATCTGTTATCTTTCATGTACCAATGTGCTGTTTCAGTATGCTAGGTGAACATAAAAGTGAACTTTAGTGAGTTCATCATCCCTGGAATGCAATGGAATCGAGAGATATATCCTGGGTAGGTTCCAGGTGTTTGTACCATTCCTGAATTTCTCTGTACTTCTTTGTGTCAAAGAACATGATGAACAGTTGTGGCCAGCTTTTGTACAGCAATAACTGTTTTATTGTAACTGCTGCCATCCTTTTGTNTCAAAANAAAATAAAAANAANAAACAAANCAAA]
[-] EMBL BI305740             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCTCTTGTTCATAGAGGCCGTGTGGACAACTAACATCCATGACTGCATTCACGGCAAGGTTTGGCCGGTCAT GGGTGCTGGCTATCACACCATTCACCATACAACATACCGTCACAACTATGGCCACTACACCGTGTGGATGGACTGGATGTTCGGCACCCTTCGAGAGCCAGAAGATATCTTGAAGAAGGATTAGGATCGAATTGTTAAGCACGGCGCGACGTTCGCCTCTCGTCTTTGTAGCAGTCGGAAGAAGGGGGTTCTATGTATTTATCCTGCTCGATGCTATCTGTTATCTTTCATGTACCAATGTGCTGTTTCAGTATGCTAGGTGAACATAAAAGTGAACTTTAGTGAGTTCATCATCCCTGGAATGCAATGGAATCGAGAGATATATCCTGGGTAGGTTCCAGGTGTTTGTACCATTCCTGAATTTCTCTGTACTTCTTTGTGTCAAAGAACATGATGAACAGTTGTGGCCAGCT                                                                                 ]
[-] EMBL CB967330             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CATAGAGGCCGTGTGGACAACTAACATCCATGACTGCATTCACGGCAAGGTTTGGCCGGTCAT GGGTGCTGGCTATCACACCATTCACCATACAACATACCGTCACAACTATGGCCACTACACCGTGTGGATGGACTGGATGTTCGGCACCCTTCGAGAGCCAGAAGATATCTTGAAGAAGGATTAGGATCGAATTGTTAAGCACGGCGCGACGTTCGCCTCTCGTCTTTGTAGCAGTCGGAAGAAGGGGGTTCTATGTATTTATCCTGCTCGATGCTATCTGTTATCTTTCATGTACCAATGTGCTGTTTCAGTATGCTAGGTGAACATAAAAGTGAACTTTAGTGAGTTCATCATTCCTGGAATGCAATGGAATCGAGAGATATATCCTGGGTAGGTTCCAGGTGTTTGTACCATTCCTG ATTTCTCTGTACTTCTTTGTGTC AAGAACATGATG ACAGTTGTGGCCAGCT                                                                                 ]


>consensus_12818#0 TCTCCACGCTTTACAACTCAACCCCCGCACCACCACCAGTCCACCACCACAATCCCAGGG CGGCGCCGCGGCCGGCAATGGCGGGCGGCGGCGGCGAGTACCTGCGCCAGTTCGTCGAGG AGACGGCCTGGTACAACGAGATCTTCCTCAGCCATGTGGTCCCGGGCGACTGGTGGCGCG CCCTCCCCCACCCGCTCCAGTCGTGGCTCCGCAACGGCCTCGGCGGCTACCTCATCTACT TCGCCTGCGGCTTCCTCTGGTGCTTCGTCATCTACTACTGGAAGCGCCACGCCTACATCC CCAAAGATTCTATACCTACAATCGAAGCTATGAAGAAGCAAATAATTGTTGCATCAAAGG CTATGCCTCTCTATTGTGCCCTTCCAACCTTATCTGAGTACATGGTTGAGAATGGATGGA CACAGTGTTATGTTAATATCAGTGAAGTTGGTTGGCCAATGTACCTGGTTTATCTGGCTT TATATCTTATCTTTGTTGAGTTTGGAATTTACTGGATGCACAGAGAGTTGCATGACATAA AGCCATTGTACAAGTACCTGCACACATACCACCATATTTACAACAAGGAGAATACCCTAT CACCATTTGCAGGACTAGCATTCCATCCACTGGATGGGATTTTGCAAGCCATACCGCATG TGTTTGCGCTCTACCTTATCCCAACACACTTCAGGACACACATTGCTCTCTTGTTCATAG AGGCCGTGTGGACAACTAACATCCATGACTGCATTCACGGCAAGGTTTGGCCGGTCATGG GTGCTGGCTATCACACCATTCACCATACAACATACCGTCACAACTATGGCCACTACACCG TGTGGATGGACTGGATGTTCGGCACCCTTCGAGAGCCAGAAGATATCTTGAAGAAGGATT AGGATCGAATTGTTAAGCACGGCGCGACGTTCGCCTCTCGTCTTTGTAGCAGTCGGAAGA AGGGGGTTCTATGTATTTATCCTGCTCGATGCTATCTGTTATCTTTCATGTACCAATGTG CTGTTTCAGTATGCTAGGTGAACATAAAAGTGAACTTTAGTGAGTTCATCATCCCTGGAA TGCAATGGAATCGAGAGATATATCCTGGGTAGGTTCCAGGTGTTTGTACCATTCCTGAAT TTCTCTGTACTTCTTTGTGTCAAAGAACATGATGAACAGTTGTGGCCAGCTTTTGTACAG CAATAACTGTTTTATTGTAACTGCTGCCATCCTTTTGTNTCAAAANAAAATAAAAANAAN AAACAAANCAAA



consensusID : consensus_12818#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 533
fasta sequence
                              [ATTGCTCTCTTGTTCATAGAGNCCGTGTGGACAACTAANCATCCCATGACTGCCATTCNCGGCAAGGTTTGGCCGGTCATGGGTGCTGGCTATCACACCATTCACCATACAACATACCGTCACAACTATGGCCACTACACCGTGTGGATGGACTGGATGTTCGGCACCCTTCGAGAGCCAGAAGATATCTTGAAGAAGGATTAGGATCGAATTGTTAAGCACGGCGCGACGTTCGCCTCTCGTCTTTGTAGCAGTCGGAAGAAGGGGGTTCTATGTATTTATCCTGCTCGATGCTATCTGTTATCTTTCATGTACCAATGTGCTGTTTCAGTATGCTAGGTGAACATAAAAGTGAACTTTAGTGAGTTCATCATCCCTGGAATGCAATGGAATCGAGAGATATATCCTGGGTAGGTTCCAGGTGTTTGTACCATTCCTGAATTTCTCTGTACTTCTTTGTGTCAAAGAACATGATGAACAGTTGTGGCCAGCTTTTGTACAGCAATAACTGTTTTATTGTAAAAAAAANAAAA]

[+] EMBL AU068066             [ATTGCTCTCTTGTTCATAGAGNCCGTGTGGACAACTAANCATCCCATGACTGCCATTCNCGGCAAGGTTTGGCCGGTCATGGGTGCTGGCTATCACACCATTCACCATACAACATACCGTCACAACTATGGCCACTACACCGTGTGGATGGACTGGATGTTCGGCACCCTTCGAGAGCCAGAAGATATCTTGAAGAAGGATTAGGATCGAATTGTTAAGCACGGCGCGACGTTCGCCTCTCGTCTTTGTAGCAGTCGGAAGAAGGGGGTTCTATGTATTTATCCTGCTCGATGCTATCTGTTATCTTTCATGTACCAATGTGCTGTTTCAGTATGCTAGGTGAACATAAAAGTGAACTTTAGTGAGTTCATCATCCCTGGAATGCAATGGAATCGAGAGATATATCCTGGGTAGGTTCCAGGTGTTTGTACCATTCCTGAATTTCTCTGTACTTCTTTGTGTCAAAGAACATGATGAACAGTTGTGGCCAGCTTTTGTACAGCAATAACTGTTTTATTGTAAAAAAAANAAAA]


>consensus_12818#1 ATTGCTCTCTTGTTCATAGAGNCCGTGTGGACAACTAANCATCCCATGACTGCCATTCNC GGCAAGGTTTGGCCGGTCATGGGTGCTGGCTATCACACCATTCACCATACAACATACCGT CACAACTATGGCCACTACACCGTGTGGATGGACTGGATGTTCGGCACCCTTCGAGAGCCA GAAGATATCTTGAAGAAGGATTAGGATCGAATTGTTAAGCACGGCGCGACGTTCGCCTCT CGTCTTTGTAGCAGTCGGAAGAAGGGGGTTCTATGTATTTATCCTGCTCGATGCTATCTG TTATCTTTCATGTACCAATGTGCTGTTTCAGTATGCTAGGTGAACATAAAAGTGAACTTT AGTGAGTTCATCATCCCTGGAATGCAATGGAATCGAGAGATATATCCTGGGTAGGTTCCA GGTGTTTGTACCATTCCTGAATTTCTCTGTACTTCTTTGTGTCAAAGAACATGATGAACA GTTGTGGCCAGCTTTTGTACAGCAATAACTGTTTTATTGTAAAAAAAANAAAA



consensusID : consensus_12818#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 472
fasta sequence
                              [AACNATGCCACTACACCGTGTTGAATTGGAACTGGATGTTCGGCACCCTTCGAGAGCCAGAAGGAATAATCTTGAAGAAAGGATTAAGGATCGAAATTGTTAAGCACGGCGCGACGTTCGCCTCTCGTCTTTGTAGCAGTCGGAAAGAAAGGGGGTTCTATGTATTTATCCTGCTCGATGCTATCTGTTATCTTTCATGTACCAATGTGCTGTTTCAGTATGCTAGGTGAACATAAAAGTGAACTTTAGTGAGTTCATCATCCCTGGAATGCAATGGAATCGAGAGATATATCCTGGGTAGGTTCCAGGTGTTTGTACCATTCCTGAATTTCTCTGTACTTCTTTGTGTCAAAGAACATGATGAACAGTTGTGGCCAGCTTTTGTACAGCAATAACTGTTTTATTGTAACTGCTGCCATCCTTTTGTATCATGAATTTTTCTCCGTTTGTTAGTCTGGTAGTAAAATTTAAA]

[+] EMBL AU163004             [AACNATGCCACTACACCGTGTTGAATTGGAACTGGATGTTCGGCACCCTTCGAGAGCCAGAAGGAATAATCTTGAAGAAAGGATTAAGGATCGAAATTGTTAAGCACGGCGCGACGTTCGCCTCTCGTCTTTGTAGCAGTCGGAAAGAAAGGGGGTTCTATGTATTTATCCTGCTCGATGCTATCTGTTATCTTTCATGTACCAATGTGCTGTTTCAGTATGCTAGGTGAACATAAAAGTGAACTTTAGTGAGTTCATCATCCCTGGAATGCAATGGAATCGAGAGATATATCCTGGGTAGGTTCCAGGTGTTTGTACCATTCCTGAATTTCTCTGTACTTCTTTGTGTCAAAGAACATGATGAACAGTTGTGGCCAGCTTTTGTACAGCAATAACTGTTTTATTGTAACTGCTGCCATCCTTTTGTATCATGAATTTTTCTCCGTTTGTTAGTCTGGTAGTAAAATTTAAA]


>consensus_12818#2 AACNATGCCACTACACCGTGTTGAATTGGAACTGGATGTTCGGCACCCTTCGAGAGCCAG AAGGAATAATCTTGAAGAAAGGATTAAGGATCGAAATTGTTAAGCACGGCGCGACGTTCG CCTCTCGTCTTTGTAGCAGTCGGAAAGAAAGGGGGTTCTATGTATTTATCCTGCTCGATG CTATCTGTTATCTTTCATGTACCAATGTGCTGTTTCAGTATGCTAGGTGAACATAAAAGT GAACTTTAGTGAGTTCATCATCCCTGGAATGCAATGGAATCGAGAGATATATCCTGGGTA GGTTCCAGGTGTTTGTACCATTCCTGAATTTCTCTGTACTTCTTTGTGTCAAAGAACATG ATGAACAGTTGTGGCCAGCTTTTGTACAGCAATAACTGTTTTATTGTAACTGCTGCCATC CTTTTGTATCATGAATTTTTCTCCGTTTGTTAGTCTGGTAGTAAAATTTAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12818#0      TCTCCACGCTTTACAACTCAACCCCCGCACCACCACCAGTCCACCACCACAATCCCAGGG 60
consensus_12818#1      ------------------------------------------------------------
consensus_12818#2      ------------------------------------------------------------
                                                                                   

consensus_12818#0      CGGCGCCGCGGCCGGCAATGGCGGGCGGCGGCGGCGAGTACCTGCGCCAGTTCGTCGAGG 120
consensus_12818#1      ------------------------------------------------------------
consensus_12818#2      ------------------------------------------------------------
                                                                                   

consensus_12818#0      AGACGGCCTGGTACAACGAGATCTTCCTCAGCCATGTGGTCCCGGGCGACTGGTGGCGCG 180
consensus_12818#1      ------------------------------------------------------------
consensus_12818#2      ------------------------------------------------------------
                                                                                   

consensus_12818#0      CCCTCCCCCACCCGCTCCAGTCGTGGCTCCGCAACGGCCTCGGCGGCTACCTCATCTACT 240
consensus_12818#1      ------------------------------------------------------------
consensus_12818#2      ------------------------------------------------------------
                                                                                   

consensus_12818#0      TCGCCTGCGGCTTCCTCTGGTGCTTCGTCATCTACTACTGGAAGCGCCACGCCTACATCC 300
consensus_12818#1      ------------------------------------------------------------
consensus_12818#2      ------------------------------------------------------------
                                                                                   

consensus_12818#0      CCAAAGATTCTATACCTACAATCGAAGCTATGAAGAAGCAAATAATTGTTGCATCAAAGG 360
consensus_12818#1      ------------------------------------------------------------
consensus_12818#2      ------------------------------------------------------------
                                                                                   

consensus_12818#0      CTATGCCTCTCTATTGTGCCCTTCCAACCTTATCTGAGTACATGGTTGAGAATGGATGGA 420
consensus_12818#1      ------------------------------------------------------------
consensus_12818#2      ------------------------------------------------------------
                                                                                   

consensus_12818#0      CACAGTGTTATGTTAATATCAGTGAAGTTGGTTGGCCAATGTACCTGGTTTATCTGGCTT 480
consensus_12818#1      ------------------------------------------------------------
consensus_12818#2      ------------------------------------------------------------
                                                                                   

consensus_12818#0      TATATCTTATCTTTGTTGAGTTTGGAATTTACTGGATGCACAGAGAGTTGCATGACATAA 540
consensus_12818#1      ------------------------------------------------------------
consensus_12818#2      ------------------------------------------------------------
                                                                                   

consensus_12818#0      AGCCATTGTACAAGTACCTGCACACATACCACCATATTTACAACAAGGAGAATACCCTAT 600
consensus_12818#1      ------------------------------------------------------------
consensus_12818#2      ------------------------------------------------------------
                                                                                   

consensus_12818#0      CACCATTTGCAGGACTAGCATTCCATCCACTGGATGGGATTTTGCAAGCCATACCGCATG 660
consensus_12818#1      ------------------------------------------------------------
consensus_12818#2      ------------------------------------------------------------
                                                                                   

consensus_12818#0      TGTTTGCGCTCTACCTTATCCCAACACACTTCAGGACACACATTGCTCTCTTGTTCATAG 720
consensus_12818#1      -----------------------------------------ATTGCTCTCTTGTTCATAG 19
consensus_12818#2      ------------------------------------------------------------
                                                                                   

consensus_12818#0      AGGCCGTGTGGACAACTAACA--TCCATGACTGC-ATTCACGGCAAGGTTTGGCCGGTCA 777
consensus_12818#1      AGNCCGTGTGGACAACTAANCATCCCATGACTGCCATTCNCGGCAAGGTTTGGCCGGTCA 79
consensus_12818#2      ------------------------------------------------------------
                                                                                   

consensus_12818#0      TGGGTGCTGGCTATCACACCATTCACCATACAACATACCGTCACAACTATGGCCACTACA 837
consensus_12818#1      TGGGTGCTGGCTATCACACCATTCACCATACAACATACCGTCACAACTATGGCCACTACA 139
consensus_12818#2      --------------------------------------------AACNATG-CCACTACA 15
                                                                   *** *** ********

consensus_12818#0      CCGTGTGGAT---GGACTGGATGTTCGGCACCCTTCGAGAGCCAGAAGATAT---CTTGA 891
consensus_12818#1      CCGTGTGGAT---GGACTGGATGTTCGGCACCCTTCGAGAGCCAGAAGATAT---CTTGA 193
consensus_12818#2      CCGTGTTGAATTGGAACTGGATGTTCGGCACCCTTCGAGAGCCAGAAGGAATAATCTTGA 75
                       ****** **    * *********************************  **   *****

consensus_12818#0      AGAA-GGATTA-GGATCGAA-TTGTTAAGCACGGCGCGACGTTCGCCTCTCGTCTTTGTA 948
consensus_12818#1      AGAA-GGATTA-GGATCGAA-TTGTTAAGCACGGCGCGACGTTCGCCTCTCGTCTTTGTA 250
consensus_12818#2      AGAAAGGATTAAGGATCGAAATTGTTAAGCACGGCGCGACGTTCGCCTCTCGTCTTTGTA 135
                       **** ****** ******** ***************************************

consensus_12818#0      GCAGTCGGAAG--AAGGGGGTTCTATGTATTTATCCTGCTCGATGCTATCTGTTATCTTT 1006
consensus_12818#1      GCAGTCGGAAG--AAGGGGGTTCTATGTATTTATCCTGCTCGATGCTATCTGTTATCTTT 308
consensus_12818#2      GCAGTCGGAAAGAAAGGGGGTTCTATGTATTTATCCTGCTCGATGCTATCTGTTATCTTT 195
                       **********   ***********************************************

consensus_12818#0      CATGTACCAATGTGCTGTTTCAGTATGCTAGGTGAACATAAAAGTGAACTTTAGTGAGTT 1066
consensus_12818#1      CATGTACCAATGTGCTGTTTCAGTATGCTAGGTGAACATAAAAGTGAACTTTAGTGAGTT 368
consensus_12818#2      CATGTACCAATGTGCTGTTTCAGTATGCTAGGTGAACATAAAAGTGAACTTTAGTGAGTT 255
                       ************************************************************

consensus_12818#0      CATCATCCCTGGAATGCAATGGAATCGAGAGATATATCCTGGGTAGGTTCCAGGTGTTTG 1126
consensus_12818#1      CATCATCCCTGGAATGCAATGGAATCGAGAGATATATCCTGGGTAGGTTCCAGGTGTTTG 428
consensus_12818#2      CATCATCCCTGGAATGCAATGGAATCGAGAGATATATCCTGGGTAGGTTCCAGGTGTTTG 315
                       ************************************************************

consensus_12818#0      TACCATTCCTGAATTTCTCTGTACTTCTTTGTGTCAAAGAACATGATGAACAGTTGTGGC 1186
consensus_12818#1      TACCATTCCTGAATTTCTCTGTACTTCTTTGTGTCAAAGAACATGATGAACAGTTGTGGC 488
consensus_12818#2      TACCATTCCTGAATTTCTCTGTACTTCTTTGTGTCAAAGAACATGATGAACAGTTGTGGC 375
                       ************************************************************

consensus_12818#0      CAGCTTTTGTACAGCAATAACTGTTTTATTGTAACTGCTGCCATCCTTTTGTNTCAAAAN 1246
consensus_12818#1      CAGCTTTTGTACAGCAATAACTGTTTTATTGTAAAAAAAANAAAA--------------- 533
consensus_12818#2      CAGCTTTTGTACAGCAATAACTGTTTTATTGTAACTGCTGCCATCCTTTTGTATCATGAA 435
                       **********************************        *                 

consensus_12818#0      AAAATAAAAANAANAAACAAANCAAA----------- 1272
consensus_12818#1      -------------------------------------
consensus_12818#2      TTTTTCTCCGTTTGTTAGTCTGGTAGTAAAATTTAAA 472
                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)