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Oryza sativa
cluster # 12827 cluster # 12827       Sequences # 11       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12827#0 length = 1240 sequences # 8  
consensus_12827#1 length = 1077 sequences # 1  
consensus_12827#2 length = 672 sequences # 2  

consensusID : consensus_12827#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1240
fasta sequence
                              [GGCGCCGCCGCCGCCGCCGTCGCATCTGCCGGCGGCGGCCCTAGCCTCCTCCCCGACGGATCTGCCGACTCGAAGGAGAGAGAAGCGAGTCACCGCCGCCTCTTCTTCTCTTTCATAGTTTTATCTCCGCCTCACCACCGCCTCACCGCCTCTTCCCTCACGCATGCCGCCGTCGCAATCTCACACTCCTCCAACCCTCAACGAAGCGCTTCCGCCACAGCCCTCAATTTTCGTCGCCGCATCTGCTAGCAAAGATCCAGGCGCCTGGAGAAGAGGAACACGAGCTACCACCACCTTCTTGCCTTCATCTGCCAGTGAGGATGGTCGCATTTTGGTGAGGATGGCGGCAACGCGCCGGCGCGTGAGTCCCCCACAGCGCCCTCCAACTTTTTTTCTCTATAGCGGTGCGCTCCCTCCCCCTCGCATCAGTAATTTCCTTTTTCTATGGCAATGTATGCATGGAAAATCTCATCACATTTACAACAGGTAACTTTCCCCATCTAATTTTCTCTCATCTTGCTGGATTTTATTTTTTTGGATCGATCCCCCTATTTTTGTTGCAGCAATACTGG-TTCGAAGCAAGCTCAACTATTTAATGGCAATATA-TTTGTCGGTACTCCACTACATAGGTTGCTTCGATTTTATTTCTACAAGATGCAGAATGCCCTCTTGATGTTTTGATATGGAGGAGTTTTCAGACGGAGAAGAACAAGCTGCTTGGCAGCCCATACGCATGTGTGGCTG-TG-CAAATGCAGCCTGCGATGGAGTGCCACAACGAGCTCCGCTAAGTTACTTTGCTAGGCCATCCTTGCGATGGCAGCTTGGCGCGGCCAGGGATTCCAGCAGCCCATGGTGGTGTTCAAAATGAGCAGATGGTTCATCTCTACCACTTGCAGTCTGATTCTACAGTATTTCCTAACCATGGCTATGAATGTTTTTTTATGAAGAAAAAATCCCAT-GTCAAACATACCTCAAATCTCAAGTTACATAT-GACCAGTGTTGATGTCATACTGACTCTCAAGTCGATTTTGACACATCTTGAATTGAACCAATCCAAACAAATAGATTTATTTTTACCTTTCTGCTTTGTCATGATTT-GGTCGACATATTCAGTCCAGATATTACAGTGATATCTCTGTTCTTCAGCAAAGCGAGAGAAATC-GCAGCATGTCTGAATTGTAATAATTGTATGTACATGAAAGATGCAAGTTTAAATTTATTTAGTTTTTATAAAAAAAAA]

[+] EMBL AA752357             [GGCGCCGCCGCCGCCGCCGTCGCATCTGCCGGCGGCGGCCCTAGCCTCCTCCCCGACGGATCTGCCGACTCGAAGGAGAGAGAAGCGAGTCACCGCCGCCTCTTCTTCTCTTTCATAGTTTTATCTCCGCCTCACCACCGCCTCACCGCCTCTTCCCTCACGCATGCCGCCGTCGCAATCTCACACTCCTCCAACCCTCAACGAAGCGCTTCCGCCACAGCCCTCAATTTTCGTCGCCGCATCTGCTAGCAAAGATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CF303619             [   GCCGCCGCCGCCGCCGTCGCATCTGCCGGCGGCGGCCCTAGCCTCCTCCCCGACGGATCTGCCGACTCGAAGGAGAGAGAAGCGAGTCACCGCCGCCTCTTCTTCTCTTTCATAGTTTTATCTCCGCCTCACCACCGTCTTTCCGTCTCTTCCCTCACGCATGCCGCCGTCGCAATCTCACACTCCTCCAACCCTCAACGAAGCGCTTCCGCCACAGCCCTCAATTTTCGTCGCCGCATCTGCTAGCAAAGATCCAGGCGCCTGGAGAAGAGGAACACGAGCTACCACCACCTTCTTGCCTTCATCTGCCAGTGAGGATGGTCGCATTTTGGTGAGGATGGCGGCAACGCGCCGGCGCGTGAGTCCCCCACAGCGCCCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CF307891             [                                                                                                                                                              CACGCATGCCGCCGTCGCAATCTCACACTCCTCCAACCCTCAACGAAGCGCTTCCGCCACAGCCCTCAATTTTCGTCGCCGCATCTGCTAGCAAAGATCCAGGCGCCTGGAGAAGAGGAACACGAGCTACCACCACCTTCTTCCCTTCATTTGCCAGTGAGGATGGTCGCATCTTGGTGAGGATGGCGGCAACGCGCCGGCGCGTGAGTCCCCCACAGCGTCCTCCAACTTTTTTTCTCTATAGCGGTGCGCTCCCTCCCCCTCGCATCAGTAATTTCCTTTTTCTATGGCAATGTATGCATGGAAAATCTCATCACATTTACAACAGGTAACTTTCCCCATCTAATTTTCTCTCATCTTGCTGGATTTTATTTTTTTGGATCGATCCCCCTATTTTTGTTGCAGCAATACTGG TTCGAAGCAAGCTCAACTATTTAATGGCAATATATTTTGTCGGTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CF320473             [                                                                                                                                                                                                                                                                                                                                                                                               CAACTTTTTTTCTCTATAGCGGTGCGCTCCCTCCCCCTCGCATCAGTAATTTTCTTTTTCTATGGCAATGTATGCATGGAAAATCTCATCACATTTACAACAGGTAACTTTCCCCATCTAATTTTCTCTCATCTTGCTGGATTTTATTTTTTTGGATCGATCCCCCTATTTTTGTTGCAGCAATACTGG TTCGAAGCAAGCTCAACTATTTAATGGCAATATA TTTGTCGGTACTCCACTACATAGGTTGCTTCGATTTTATTTCTACAAGATGCAGAATGCCCTCTTGATGTTTTGATATGGAGGAGTTTTCAGACGGAGAAGAACAAGCTGCTTGGCAGCCCATACGCATGTGTGGCTG TG CAAATGCAGCCTGCGATGGAGTGCCACAACGAGCTCCGCTAAGTTACTTTGCTAGGCCATCCTTGCGATGGCAGCTTGGCGCGGCCAGGGATTCCAGCAGCCCATGGTGGTGTTCAAAATGAGCAGATGGTTCATCTCTACCACTTGCAGTCTGATTCTACAGTATTTCCTAACCATGGCTATGAATGTTTTTTTATGAAGAAAAAATCCCAT GTCA                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM420006             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CAATACTGGTTTCGAANCAAGCTCAACTATTTAATGGCAATATA TTTGTCGGTACTCCACTACATAGGTTGCTTCGATTTTATTTCTACAAGATGCAGAATGCCCTCTTGATGTTTTGATATGGAGGAGTTTTCAGACGGAGAAGAACAAGCTGCTTGGCAGCCCATACGCATGTGTGGCTG TG CAAATGCAGCCTGCGATGGAGTGCCACAACGAGCTCCGCTAAGTTACTTTGCTAGGCCATCCTTGCGATGGCAGCTTGGCGCGGCCAGGGATTCCAGCAGCCCATGGTGGTGTTCAAAATGAGCAGATGGTTCATCTCTACCACTTGCAGTCTGATTCTACAGTATTTCCTAACCATGGCTATGAATGTTTTTTTATGAAGAAAAAATCCCAT GTCAAACATACCTCAAATCTCAAGTTACATAT GACCAGT TTGATGTCATACTGACTCTCAAGTCGATTTTGACACATCTTGAATTGAACC ATCCCAAC AATAGATTTATTTTTAaaaaaaaaa                                                                                                                                                             ]
[-] EMBL CF307890             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATATGGAGGAGTTTTCAGACGGAGAAGAACAAGCTGCTTGGCAGCCCATACGCATGTGTGGCTG TG CAAATGCAGCCTGCGAATGAGTGCCACAACGAGGTCCGCTAAGTTACTTTGCTAGGCCATCCTTGCGATGGCAGCTTGGCGCGGCCAGGGATTCCAGCAGCCCATGGTGGTGTTCAAAATGAGCAGATGGTTCATCTCTACCACTTGCAGTCTGATTCTACAGTATTTCCTAACCATGGCTATGAATGTTTTTTTATGAAGAAAAAATCCCAT GTCAAACATACCTCAAATCTCAAGTTACATAT GACCAGTGTTGATGTCATACTGACTCTCAAGTCGATTTTGACACATCTTGAATTGAACCAATCCAAACAAATAGATTTATTTTTACCTTTCTGCTTTGTCATGATTT GGTCGACATATTCAGTCCAGATATTACAGTGATATCTCTGTTCTTCAGCAAAGCGAGAGAAATCTGCAaaaaaa                                                                     ]
[+] EMBL BM418703             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GAGTTTTCAGACGGAGAAGAACAAGCTGCTTGGCAGCCCATACGCATGTGTGGCTGTTGCCAAATGCAGCCTGCGATGGAGTGCCACAACGAGCTCCGCTAAGTTACTTTGCTA GCCATCCNTGCGATGGCAGCTTGGCGCGGCCAGGGATTCCAGCAGCCCATGGTGGTGTTCAAAATGAGCAGATGGTTCATCTCTACCACTTGCAGTCTGATTCTACAGTATTTCCTAACCATGGCTATGAATGTTTTTTTATGAAGAAAAAATCCCATGGTC AACATACCTCAAATCTCAAGTTACATATGGACCAGTGTTGATGTCATACTGACTCTCAAGTCGATTTTGACACATCTTGAANTGAACCAATCCAAACCAATAGATTTATTTTTACCTTTCTGCTTTGTCATGATTTGGGTCGACATATTCAGTCCAGATATTACAGTGATATCTCTGTTCTTCAGCAAAGCGAGAGAAATCTGCAGCATGTCTGAATTGTAATAATTGTATGTACATGAAAGATGCAAGTTTAAATTTATTTAGTTTTTATAAAAAAAAA]
[+] EMBL AA751719             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ATGGCTATGAATGTTTTTTTATGAAGAAAAAATCCCAT GTCAAACATACCTCAAATCTCAAGTTACATAT GACCAGTGTTGATGTCATACTGACTCTCAAGTCGATTTTGACACATCTTGAATTGAACCAATCCAAACAAATAGATTTATTTTTACCTTTCTGCTTTGTCATGATTT GGTCGACATATTCAGTCCAGATATTACAGTGATATCTCTGTTCTTCAGCAAAGCGAGAGAAATC GCAGCATGTCTGAATTGTAATAATTGTATGTACATGAAAGATGCAAGTTTAAATTTATTT                  ]


>consensus_12827#0 GGCGCCGCCGCCGCCGCCGTCGCATCTGCCGGCGGCGGCCCTAGCCTCCTCCCCGACGGA TCTGCCGACTCGAAGGAGAGAGAAGCGAGTCACCGCCGCCTCTTCTTCTCTTTCATAGTT TTATCTCCGCCTCACCACCGCCTCACCGCCTCTTCCCTCACGCATGCCGCCGTCGCAATC TCACACTCCTCCAACCCTCAACGAAGCGCTTCCGCCACAGCCCTCAATTTTCGTCGCCGC ATCTGCTAGCAAAGATCCAGGCGCCTGGAGAAGAGGAACACGAGCTACCACCACCTTCTT GCCTTCATCTGCCAGTGAGGATGGTCGCATTTTGGTGAGGATGGCGGCAACGCGCCGGCG CGTGAGTCCCCCACAGCGCCCTCCAACTTTTTTTCTCTATAGCGGTGCGCTCCCTCCCCC TCGCATCAGTAATTTCCTTTTTCTATGGCAATGTATGCATGGAAAATCTCATCACATTTA CAACAGGTAACTTTCCCCATCTAATTTTCTCTCATCTTGCTGGATTTTATTTTTTTGGAT CGATCCCCCTATTTTTGTTGCAGCAATACTGGTTCGAAGCAAGCTCAACTATTTAATGGC AATATATTTGTCGGTACTCCACTACATAGGTTGCTTCGATTTTATTTCTACAAGATGCAG AATGCCCTCTTGATGTTTTGATATGGAGGAGTTTTCAGACGGAGAAGAACAAGCTGCTTG GCAGCCCATACGCATGTGTGGCTGTGCAAATGCAGCCTGCGATGGAGTGCCACAACGAGC TCCGCTAAGTTACTTTGCTAGGCCATCCTTGCGATGGCAGCTTGGCGCGGCCAGGGATTC CAGCAGCCCATGGTGGTGTTCAAAATGAGCAGATGGTTCATCTCTACCACTTGCAGTCTG ATTCTACAGTATTTCCTAACCATGGCTATGAATGTTTTTTTATGAAGAAAAAATCCCATG TCAAACATACCTCAAATCTCAAGTTACATATGACCAGTGTTGATGTCATACTGACTCTCA AGTCGATTTTGACACATCTTGAATTGAACCAATCCAAACAAATAGATTTATTTTTACCTT TCTGCTTTGTCATGATTTGGTCGACATATTCAGTCCAGATATTACAGTGATATCTCTGTT CTTCAGCAAAGCGAGAGAAATCGCAGCATGTCTGAATTGTAATAATTGTATGTACATGAA AGATGCAAGTTTAAATTTATTTAGTTTTTATAAAAAAAAA



consensusID : consensus_12827#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1077
fasta sequence
                              [AATCGCGTGCGCCCATGCCCTCCCCCTCTCCTCGCACACGTCGCCGCCGCCGTAATCGCATCTGCCCATGGCGACCCCGGTCTCCTCCGCGATGGAACTTCCCACTCGGAGGAGAGGGGTGCAAGCCGCTGCCGCCTCTTCTCCTCTTTTATCTCTGCCTCGCCACCGCCTCCCCGCTTCTTCCCTCACGTGTGCTGCCGCCGTAATCTCGCCCTCCTAACCGTCAACGGAGCGCTTCCGCCACTGCCGCTCTTTCCAATCAAGCCACCGCATCTGCAATCGAAGATCCATCCGCCTGGAGAAGAAGAACATGAGCCGCCACCATCCTCATCTGCCCGTGAGGACGGTTGCATCTTGGTGAGGACGGGGGCAAGGCACTGGCACGCGAATCCCCCAACGACGCCCTCCACCTTTTTTTTTCCTCTGTGGCACAGTGGAAGCAAGCTATCTAATGGCAATAGATCTGCTGGTACTCCACTACATAGGTTGCTTGGATCTTATTTCTACCAGATGCAGTTGGAGTTAGCACATATATCTTAATCCACTCAGGAAACTTCTCCCAACCCTGTTTACAGATGGAGAAGAATGAGCTACTTAGGAGCCCATACGAATGTGCTGTTCTCCAAGAGGCATGTGTGGCGCAAATGCAGCCTTCGACAGAGTGCCCACAGCAAGCTCTGTTAAACTGCTTTGCTTGGCCATCCATCCGATTGCTACCAGCCCATGTATACGATGGAGTATTTCACATGATAACAAGCTATATTATTATCTCAGTACATCTTATTTCACTCCACATGATTATTAAATGTTTAGCTTCTATATATTCAAGGTCGCTTGCCTACATCAAACCTTTGATTCAAGGTGGTGTTCAAAATCAGCAGATGGTTCATCTCTACTACTTGCAGTCTGATTCTACAGAATTGGTGGGCATCTGGACTCCAGATATTACACTGATATCTCCGTGTTCTTCCGCGAAGCAAGAGAAATCTGCAGTATATCTGAATTGTTAAGCTATGCAAAATTATTTATATGTACATGAAAGATGCAATTTTCAATTTATTTAGTTTTTATATAACG]

[+] EMBL AK103091             [AATCGCGTGCGCCCATGCCCTCCCCCTCTCCTCGCACACGTCGCCGCCGCCGTAATCGCATCTGCCCATGGCGACCCCGGTCTCCTCCGCGATGGAACTTCCCACTCGGAGGAGAGGGGTGCAAGCCGCTGCCGCCTCTTCTCCTCTTTTATCTCTGCCTCGCCACCGCCTCCCCGCTTCTTCCCTCACGTGTGCTGCCGCCGTAATCTCGCCCTCCTAACCGTCAACGGAGCGCTTCCGCCACTGCCGCTCTTTCCAATCAAGCCACCGCATCTGCAATCGAAGATCCATCCGCCTGGAGAAGAAGAACATGAGCCGCCACCATCCTCATCTGCCCGTGAGGACGGTTGCATCTTGGTGAGGACGGGGGCAAGGCACTGGCACGCGAATCCCCCAACGACGCCCTCCACCTTTTTTTTTCCTCTGTGGCACAGTGGAAGCAAGCTATCTAATGGCAATAGATCTGCTGGTACTCCACTACATAGGTTGCTTGGATCTTATTTCTACCAGATGCAGTTGGAGTTAGCACATATATCTTAATCCACTCAGGAAACTTCTCCCAACCCTGTTTACAGATGGAGAAGAATGAGCTACTTAGGAGCCCATACGAATGTGCTGTTCTCCAAGAGGCATGTGTGGCGCAAATGCAGCCTTCGACAGAGTGCCCACAGCAAGCTCTGTTAAACTGCTTTGCTTGGCCATCCATCCGATTGCTACCAGCCCATGTATACGATGGAGTATTTCACATGATAACAAGCTATATTATTATCTCAGTACATCTTATTTCACTCCACATGATTATTAAATGTTTAGCTTCTATATATTCAAGGTCGCTTGCCTACATCAAACCTTTGATTCAAGGTGGTGTTCAAAATCAGCAGATGGTTCATCTCTACTACTTGCAGTCTGATTCTACAGAATTGGTGGGCATCTGGACTCCAGATATTACACTGATATCTCCGTGTTCTTCCGCGAAGCAAGAGAAATCTGCAGTATATCTGAATTGTTAAGCTATGCAAAATTATTTATATGTACATGAAAGATGCAATTTTCAATTTATTTAGTTTTTATATAACG]


>consensus_12827#1 AATCGCGTGCGCCCATGCCCTCCCCCTCTCCTCGCACACGTCGCCGCCGCCGTAATCGCA TCTGCCCATGGCGACCCCGGTCTCCTCCGCGATGGAACTTCCCACTCGGAGGAGAGGGGT GCAAGCCGCTGCCGCCTCTTCTCCTCTTTTATCTCTGCCTCGCCACCGCCTCCCCGCTTC TTCCCTCACGTGTGCTGCCGCCGTAATCTCGCCCTCCTAACCGTCAACGGAGCGCTTCCG CCACTGCCGCTCTTTCCAATCAAGCCACCGCATCTGCAATCGAAGATCCATCCGCCTGGA GAAGAAGAACATGAGCCGCCACCATCCTCATCTGCCCGTGAGGACGGTTGCATCTTGGTG AGGACGGGGGCAAGGCACTGGCACGCGAATCCCCCAACGACGCCCTCCACCTTTTTTTTT CCTCTGTGGCACAGTGGAAGCAAGCTATCTAATGGCAATAGATCTGCTGGTACTCCACTA CATAGGTTGCTTGGATCTTATTTCTACCAGATGCAGTTGGAGTTAGCACATATATCTTAA TCCACTCAGGAAACTTCTCCCAACCCTGTTTACAGATGGAGAAGAATGAGCTACTTAGGA GCCCATACGAATGTGCTGTTCTCCAAGAGGCATGTGTGGCGCAAATGCAGCCTTCGACAG AGTGCCCACAGCAAGCTCTGTTAAACTGCTTTGCTTGGCCATCCATCCGATTGCTACCAG CCCATGTATACGATGGAGTATTTCACATGATAACAAGCTATATTATTATCTCAGTACATC TTATTTCACTCCACATGATTATTAAATGTTTAGCTTCTATATATTCAAGGTCGCTTGCCT ACATCAAACCTTTGATTCAAGGTGGTGTTCAAAATCAGCAGATGGTTCATCTCTACTACT TGCAGTCTGATTCTACAGAATTGGTGGGCATCTGGACTCCAGATATTACACTGATATCTC CGTGTTCTTCCGCGAAGCAAGAGAAATCTGCAGTATATCTGAATTGTTAAGCTATGCAAA ATTATTTATATGTACATGAAAGATGCAATTTTCAATTTATTTAGTTTTTATATAACG



consensusID : consensus_12827#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 672
fasta sequence
                              [TAATTTTCCCCATGTAATTTTCTCTCTCATCTGGCTGGATTTAATTTTTTGGTTCGATCCCCGTATTTTTCTTGCAGCAGTGGAAGCAAGCTATCTAATGGCAATAGATCTGCTGGTACTCCACTACATAGGTTGCTTGGATCTTATTTCTACCAGATGCAGTTGGAGTTAGCACATATATCTTAATCCACTCAGGAAACTTCTCCCAACCCTGGTGAGTTTTCCCCAAATCAACCCCTTAAATTTTGAAGTCTGTAGTTGAGTGCATATATCCATTTACATTTTGCTGGCTGGAATGCCCTCTTGATGTTTTGATATGGGGAAAAAGTTTACAGATGGAGAAGAATGAGCTACTTAGGAGCCCATACGAATGTGCTGTTCTCCAAGAGGCATGTGTGGCGCAAATGCAGCCTTCGACAGAGTGCCCACAGCAAGCTCTGTTAAACTGCTTTGCTTGGCCATCCATCCGATTGCTACCAGCCCATGTATACGATGGAGTATTTCACATGATAACAAGCTATATTATTATCTCAGTACATCTTATTTCACTCCACATGATTATTAAATGTTTAGCTTCTATATATTCAAGGTCGCTTGCCTACATCAAACCTTTGATTCAAGGTAAAACCCTTTAAGTTCTCCAAATATTGTTTATTGAGTCTAATGTGAATT]

[+] EMBL CF303945             [TAATTTTCCCCATGTAATTTTCTCTCTCATCTGGCTGGATTTAATTTTTTGGTTCGATCCCCGTATTTTTCTTGCAGCAGTGGAAGCAAGCTATCTAATGGCAATAGATCTGCTGGTACTCCACTACATAGGTTGCTTGGATCTTATTTCTACCAGATGCAGTTGGAGTTAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CF304908             [                                                                           AGCAGTGGAAGCAAGCTATCTAATGGCAATAGATCTGCTGGTACTCCACTACATAGGTTGCTTGGATCTTATTTCTACCAGATGCAGTTGGAGTTAGCACATATATCTTAATCCACTCAGGAAACTTCTCCCAACCCTGGTGAGTTTTCCCCAAATCAACCCCTTAAATTTTGAAGTCTGTAGTTGAGTGCATATATCCATTTACATTTTGCTGGCTGGAATGCCCTCTTGATGTTTTGATATGGGGAAAAAGTTTACAGATGGAGAAGAATGAGCTACTTAGGAGCCCATACGAATGTGCTGTTCTCCAAGAGGCATGTGTGGCGCAAATGCAGCCTTCGACAGAGTGCCCACAGCAAGCTCTGTTAAACTGCTTTGCTTGGCCATCCATCCGATTGCTACCAGCCCATGTATACGATGGAGTATTTCACATGATAACAAGCTATATTATTATCTCAGTACATCTTATTTCACTCCACATGATTATTAAATGTTTAGCTTCTATATATTCAAGGTCGCTTGCCTACATCAAACCTTTGATTCAAGGTAAAACCCTTTAAGTTCTCCAAATATTGTTTATTGAGTCTAATGTGAATT]


>consensus_12827#2 TAATTTTCCCCATGTAATTTTCTCTCTCATCTGGCTGGATTTAATTTTTTGGTTCGATCC CCGTATTTTTCTTGCAGCAGTGGAAGCAAGCTATCTAATGGCAATAGATCTGCTGGTACT CCACTACATAGGTTGCTTGGATCTTATTTCTACCAGATGCAGTTGGAGTTAGCACATATA TCTTAATCCACTCAGGAAACTTCTCCCAACCCTGGTGAGTTTTCCCCAAATCAACCCCTT AAATTTTGAAGTCTGTAGTTGAGTGCATATATCCATTTACATTTTGCTGGCTGGAATGCC CTCTTGATGTTTTGATATGGGGAAAAAGTTTACAGATGGAGAAGAATGAGCTACTTAGGA GCCCATACGAATGTGCTGTTCTCCAAGAGGCATGTGTGGCGCAAATGCAGCCTTCGACAG AGTGCCCACAGCAAGCTCTGTTAAACTGCTTTGCTTGGCCATCCATCCGATTGCTACCAG CCCATGTATACGATGGAGTATTTCACATGATAACAAGCTATATTATTATCTCAGTACATC TTATTTCACTCCACATGATTATTAAATGTTTAGCTTCTATATATTCAAGGTCGCTTGCCT ACATCAAACCTTTGATTCAAGGTAAAACCCTTTAAGTTCTCCAAATATTGTTTATTGAGT CTAATGTGAATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12827#0      ------------------------------------GGCGCCGCCGCCGCCGCCGTCGCA 24
consensus_12827#1      AATCGCGTGCGCCCATGCCCTCCCCCTCTCCTCGCACACGTCGCCGCCGCCGTAATCGCA 60
consensus_12827#2      ------------------------------------------------------------
                                                                                   

consensus_12827#0      TCTGCCGGCGGCGGCCCTAGCCTCCTCCCCGACGGATCTGCCGACTCGAAGGAGAGAGAA 84
consensus_12827#1      TCTGCCCATGGCGACCCCGGTCTCCTCCGCGATGGAACTTCCCACTCGGAGGAGAGGGGT 120
consensus_12827#2      ------------------------------------------------------------
                                                                                   

consensus_12827#0      GCGAGTCACCGCCGCCTCTTCTTCTCTTTCATAGTTTTATCTCCGCCTCACCACCGCCTC 144
consensus_12827#1      GCAAGCCGCTGCCGCCTCTTCTCCTCTTT--------TATCTCTGCCTCGCCACCGCCTC 172
consensus_12827#2      ------------------------------------------------------------
                                                                                   

consensus_12827#0      ACCGCCTCTTCCCTCACGCATGCCGCCGTCGCAATCTCACACTCCTCCAACCCTCAACGA 204
consensus_12827#1      CCCGCTTCTTCCCTCACGTGTGCTGCCGCCGTAATCTCGCCCTCCT--AACCGTCAACGG 230
consensus_12827#2      ------------------------------------------------------------
                                                                                   

consensus_12827#0      AGCGCTTCCGCCACAGCC-----CTCAATTTTCGTCGCCGCATCTGCTAGCAAAGATCCA 259
consensus_12827#1      AGCGCTTCCGCCACTGCCGCTCTTTCCAATCAAGCCACCGCATCTGCAATCGAAGATCCA 290
consensus_12827#2      -------------------------TAATTTTCCCCATGTAATTTTCTCTC------TCA 29
                                                  * *     *     ** * *   *       **

consensus_12827#0      GGCGCCTGGAGAAGAGGAACACGAGCTACCACCACCTTCTTGCCTTCATCTGCCAGTGAG 319
consensus_12827#1      TCCGCCTGGAGAAGAAGAACATGAGCCGCCACCATCCTC--------ATCTGCCCGTGAG 342
consensus_12827#2      TCTGGCTGGATTTAATTTTTTGGTTCGATCCCCGTATTTTT-------CTTGCAGCAGTG 82
                          * *****    *       *  *   * **    *            ***    * *

consensus_12827#0      GATGGTCGCATTTTGGTGAGGATGGCGGCAACGCGCCGGCGCGTGAGTCCCCCA-CAGCG 378
consensus_12827#1      GACGGTTGCATCTTGGTGAGGACGGGGGCAAGGCACTGGCACGCGAATCCCCCAACGACG 402
consensus_12827#2      GAAGCAAGCTATCTAATGGCAATAG-----ATCTGCTGGTAC-----TCCACTA-CATAG 131
                       ** *   **    *  **   *  *     *    * **  *     *** * * *   *

consensus_12827#0      CCCTCCAACTTTTTTTCTCTATAGCGGTGCGCTCCCTCCCCCTCGCATCAGTAATTTCCT 438
consensus_12827#1      CCCTCCACCTTTTTTTTTCCTCTGTGGCACA-------------GTGGAAGCAAGCTATC 449
consensus_12827#2      GTTGCTTGGATCTTATTTCTACCA-GATGCA-------------GTTGGAGTTAGCACAT 177
                           *     * ** * **      *   *              *    **  *      

consensus_12827#0      TTTTCTATGGCAATGTATGCATGGAAAATCTCATCACATTTACAACAGGTAACTTTCCCC 498
consensus_12827#1      TA----ATGGCAATAGATCTGCTGGTACTC-CACTACAT-------AGGTTGCTT----- 492
consensus_12827#2      AT----ATCTTAATCCACTCAGGAAACTTCTCCCAACCCT-------GGTGAGTTTTCCC 226
                             **   ***  *           ** *   **          ***   **     

consensus_12827#0      ATCTAATTTTCTCTCATCTTGCTGGATTTTATTTTTTTGGATCGATCCCCCTATTTTTGT 558
consensus_12827#1      -----------------------GGATCTTATTTCT----ACCA--------------GA 511
consensus_12827#2      ------------------------CAAATCAACCCCTTAAATT----------------T 246
                                                *  * *         *                   

consensus_12827#0      TGCAGCAATACTGGTTCGAAGCAAGCTCAACTATTTAATGGCAATATATTTGTCGGTACT 618
consensus_12827#1      TGCAG----------TTGGAGTTAGCACA---------------TATATCT-----TAAT 541
consensus_12827#2      TGAAGT--------CTGTAGTTGAGTGCA---------------TATATCCATTTACATT 283
                       ** **          *       **  **               *****        * *

consensus_12827#0      CCACTACATAGGTTGCTTC-GATTTTATTTCTACAAGATGCAGAATGCCCTCTTGATGTT 677
consensus_12827#1      CCACTCAGGAAACTTCTCCCAACCCTGTTTACAGATGGAGAAGAATGAGCTACTTA---- 597
consensus_12827#2      TTGCTGGCTGGAATGCCC----TCTTGATGTTTTGATATGGGGAAAAAGTTTACAGATGG 339
                          **        * *         *  *          *  ***     *         

consensus_12827#0      TTGATATGGAGGAGTTTTCAGACGGAGAAGAACAAGCTGCTTGGCAGCCCATACGCATGT 737
consensus_12827#1      ----------GGAGCCC--------ATACGAATGTGCTGTTCT----CCAAGAGGCATGT 635
consensus_12827#2      AGAAGAATGAGCTACTTAGGAGCCCATACGAATGTGCTGTTCT----CCAAGAGGCATGT 395
                                 *              * * ***   **** *      ** * * ******

consensus_12827#0      GTGGCTGTGCAAATGCAGCCTGCGATGGAGTGCC-ACAACGAGCTCCGCTAAGTTACTTT 796
consensus_12827#1      GTGGC---GCAAATGCAGCCTTCGACAGAGTGCCCACAGCAAGCTCTGTTAAACTGCTTT 692
consensus_12827#2      GTGGC---GCAAATGCAGCCTTCGACAGAGTGCCCACAGCAAGCTCTGTTAAACTGCTTT 452
                       *****   ************* ***  ******* *** * ***** * ***  * ****

consensus_12827#0      GCTAGGCCATCCTTGCGATGGCAGCTTGGCGCGGCCAGGGATTCCAGCAGCCCATGGTGG 856
consensus_12827#1      GCTTGGCCATCCATCCGATTGCTAC------CAGCC-------CATGTATACGATGG-AG 738
consensus_12827#2      GCTTGGCCATCCATCCGATTGCTAC------CAGCC-------CATGTATACGATGG-AG 498
                       *** ******** * **** **  *      * ***       *  * *  * ****  *

consensus_12827#0      TGTTCAAAATGAGCAGATGGTTCATCTCTACCACTTGCAGTCTGATTCTACAGTATTTCC 916
consensus_12827#1      TATTTCACATGATAACAAGCTATATTATTATCTCAGTACATCTTATTTCACTCCA---CA 795
consensus_12827#2      TATTTCACATGATAACAAGCTATATTATTATCTCAGTACATCTTATTTCACTCCA---CA 555
                       * **  * ****  * * * *  **   ** * *      *** ***  **   *   * 

consensus_12827#0      TAACCATGGCTATGAATGTTT---TTTTATGAAGAAAAAATCCCATGTCAAACATACCTC 973
consensus_12827#1      TGATTAT-----TAAATGTTTAGCTTCTATATATTCAAGGTCGCTTGCC-----TACATC 845
consensus_12827#2      TGATTAT-----TAAATGTTTAGCTTCTATATATTCAAGGTCGCTTGCC-----TACATC 605
                       * *  **     * *******   ** ***  *   **  ** * ** *     *** **

consensus_12827#0      AAATCTCAAGTTACATATGACCAGTGTTGATGTCATACTGACTCTCAAGTCGATTTTGAC 1033
consensus_12827#1      AAACCT--------------------TTGAT-------------TCAAGGTGGTGTTCA- 871
consensus_12827#2      AAACCTT----------TGATTCAAGGTAAAACCCTTTAAGTTCTCCAAATATTGTTTAT 655
                       *** **                     * *              ** *     * ** * 

consensus_12827#0      ACATCTTGAATTGAACCAATCCAAACAAATAGATTTATTTTTACCTTTCTGCTTTGTCAT 1093
consensus_12827#1      AAATCAGCAGATGGTTCATCTC-------------TACTACTTGCAGTCTGATTCTACA- 917
consensus_12827#2      TGAGTCTAATGTGAATT------------------------------------------- 672
                         *     *  **                                               

consensus_12827#0      GATTTGGTCGACATATTCAGTCCAGATATTACAGTGATATCTC--TGTTCTTCAGCAAAG 1151
consensus_12827#1      GAATTGGTGGGCATCTGGACTCCAGATATTACACTGATATCTCCGTGTTCTTCCGCGAAG 977
consensus_12827#2      ------------------------------------------------------------
                                                                                   

consensus_12827#0      CGAGAGAAATC-GCAGCATGTCTGAATTGTAA-------------TAATTGTATGTACAT 1197
consensus_12827#1      CAAGAGAAATCTGCAGTATATCTGAATTGTTAAGCTATGCAAAATTATTTATATGTACAT 1037
consensus_12827#2      ------------------------------------------------------------
                                                                                   

consensus_12827#0      GAAAGATGCAAGTTTAAATTTATTTAGTTTTTATAAAAAAAAA 1240
consensus_12827#1      GAAAGATGCAATTTTCAATTTATTTAGTTTTTATATAACG--- 1077
consensus_12827#2      -------------------------------------------
                                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)