These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12831#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 718 fasta sequence [GATGNGGCGGTGGTGCGCCGCCGCCGGCCTCGGCCTCGGCCGCCGCCTCCTCTCCTCCTCTGTCTCCGCCCCTGCCCACCGCCCTCTTCCGGCGCACCTCATCCCCAGCCCCAGGCCATTGCCCTTCTCCTCCCGCCACCACCTCTTG-ACTCCTCCTCTGGGTCTCCATCCCTCCTCCCCACCGCCGATGCAAT-GGCAGACGCAGCAGGTGCGCCACTTCGCCGCCAAGGACAGATCGCGCGCGCCACGGACGCCCACCACCTCCAAGGTCAAGAAGTACAAGATCAAGCCCCCCTCCT-CCATG-AAGTTTCGATTCAGAG-TCATGAATGACGGCCAGGTCCGCAGGTGGA-GAGCCGGCAAGCGCCACAATGCTCACCTCAAGTCGAAGGAAGCGAAAAGAAGACTTCGGAAGCCTGCATTAGTGCACTTAGCTTATGCAAAAGTGATAAAGAAGCTCAACTTCTGCAGCTAGGAAATCAGGACAGACATGATGGAGTTTGGCATGCGAGACAGATTGATGAGTACTGAGTGCCAACTACTGCATTCCTCACACTGATTTGAAATGTTATTTTTTTCCCA-ATTGTTGTTTGATGCATTCTCATCTGGTTTTGTTTTCTGCACAATCTGGCTGATAAAGCCCACCCGTCTTGTGCTATGTACAATATTCAGCATAATAGTGGGATAACTGCTGCTGGTGAAGAAAAAGCAAAAAAAAAAA] [+] EMBL C28081 [GATGNGGCGGTGGTGCGCCG CG CGGCCTCGGCCTCGGCCGCCGCCTCCTCTCCTCCTCTGTNTCCGCCCCTGCCCACCGCCCTCTTCCGGCGCACCTCATCCCCAGCCCCAGGCCATTGCCCTTNTCCTCCCGCCACCACCTCTTG ACTCCTCCTCTGGGTCTCCATCCCTCCTCCCCACCGCCGATGCAAT GGCAGACGCAGCAGGTGCGCCACTTCGCCGCCAAGGACAGATCGCGCGCGCCACGGACGNCCACCACCTCCAAGGTCAAGAAGTACAAGATCAAGCCCCCCTNCT CCATG AAGTTTCGATTCAGAG TCATGAATGACGGCCAGGTCCGCA GTGGAGGAGCCGGNAA ] [+] EMBL AU067884 [ GGTGCGCCGCCGCCGGCCTCGGCCTCGGCCGCCGCCTCCTCTCCTCCTCTGTCTCCGCCCCTGCCCACCGCCCTCTTCCGGCGCACCTCATCCCCAGCCCCAGGCCATTGCCCTTCTCCTCCCGCCACCACCTCTTGNACTCCTCCTCTGGGTCTCCATCCCTCCTCCCCACCGCCGATGNAATGGGCAGACGCAGNAGGTGNGCCACTTCGCCGCCAAGGACAGATCGCGCGCGCCANGGACGCCCACCACCTCCAAGGTCAAGAAGTACAAGATCAAGCCCCCCTCCTCCCATGAAAGTTTCGATTCAGAGTTCAT ] [+] EMBL AK121742 [ GCCGCCGGCCTCGGCCTCGGCCGCCGCCTCCTCTCCTCCTCTGTCTCCGCCCCTGCCCACCGCCCTCTTCCGGCGCACCTCATCCCCAGCCCCAGGCCATTGCCCTTCTCCTCCCGCCACCACCTCTTG ACTCCTCCTCTGGGTCTCCATCCCTCCTCCCCACCGCCGATGCAAT GGCAGACGCAGCAGGTGCGCCACTTCGCCGCCAAGGACAGATCGCGCGCGCCACGGACGCCCACCACCTCCAAGGTCAAGAAGTACAAGATCAAGCCCCCCTCCT CCATG AAGTTTCGATTCAGAG TCATGAATGACGGCCAGGTCCGCAGGTGGA GAGCCGGCAAGCGCCACAATGCTCACCTCAAGTCGAAGGAAGCGAAAAGAAGACTTCGGAAGCCTGCATTAGTGCACTTAGCTTATGCAAAAGTGATAAAGAAGCTCAACTTCTGCAGCTAGGAAATCAGGACAGACATGATGGAGTTTGGCATGCGAGACAGATTGATGAGTACTGAGTGCCAACTACTGCATTCCTCACACTGATTTGAAATGTTATTTTTTTCCCA ATTGTTGTTTGATGCATTCTCATCTGGTTTTGTTTTCTGCACAATCTGGCTGATAAAGCCCACCCGTCTTGTGCTATGTACAATATTCAGCATAATAGTGGGATAACT ] [+] EMBL CA755274 [ CCTCGGCCTCGGCCGCCGCCTCCTCTCCTCCTCTGTCTCCGCCCCTGCCCACCGCCCTCTTCCGGCGCACCTCATCCCCAGCCCCAGGCCATTGCCCTTCTCCTCCCGCCACCACCTCTTG ACTCCTCCTCTGGGTCTCCATCCCTCCTCCCCACCGCCGATGCAAT GGCAGACGCAGCAGGTGCGCCACTTCGCCGCCNAGGACAGATCGCGCGCGCCACGGACGCCCACCACCTCCNAGGTCAAGAAGTACAAGATCAAGCCCCCCTCCT CCATG AAGTTTCGATTCAGAG TCATGAATGACGGCCAGGTCCGCAGGTGGA GAGCCGGCAAGCGCCACAATGCTCACCTCAAGTCGAAGGAAGCGAAAAGAAGACTTCGGAAGCCTGCATTAGTGCACTTAGCTTATGCAAAAGTGATNAAGAAGCTCAACTTCTGCAGCTAGGAAATCAGGACAGACATGATGGAGTTTGGCATGCGAGACAGATTGATGAGTACTGAGTGCCAACTACTGCATTCCTCACACTGATTTGAAATGTTATTTTTTTCCCA ATTGTTGTTTGATGCATTCTCATCTGGTTTTGTTTTCTG ] [-] EMBL BU673696 [ GGGTCTCCATCCCTCCTCCCCACCGCCGATGCAAT GGCAGACGCAGCAGGTGCGCCACTTCGCCGCCAAGGACAGATCGCGCGCGCCACGGACGCCCACCACCTCCAAGGTCAAGAAGTACAAGATCAAGCCCCCCTCCT CCATG AAGTTTCGATTCAGAG TCATGAATGACGGCCAGGTCCGCAGGTGGA GAGCCGGCAAGCGCCACAATGCTCACCTCAAGTCGAAGGAAGCGAAAAGAAGACTTCGGAAGCCTGCATTAGTGCACTTAGCTTATGCAAAAGTGATAAAGAAGCTCAACTTCTGCAGCTAGGAAATCAGGACAGACATGATGGAGTTTGGCATGCGAGACAGATTGACGAGTACTGAGTGCCAACTACTGCATTCCTCACACTGATTTGAAATGTTATTTTTTTCCCA ATTGTGGTTTGATGCATTCTCATCTGGTTTTGTTTTCTGCACAATCTGGCTGATAAAGCCCACCCGTATTGTGCTATGTAC ATATTCAGC ATAGTGGGATAACT ] [+] EMBL BI804576 [ ATGCAAT GGCAGACGCAGCAGGTGCGCCACTTCGCCGCCAAGGACAGATCGCGCGCGCCACGGACGCCCACCACCTCCAAGGTCAAGAAGTACAAGATCAAGCCCCCCTCCT CCATG AAGTTTCGATTCAGAG TCATGAATGACGGCCAGGTCCGCAGGTGGA GAGCCGGCAAGCGCCACAATGCTCACCTCAAGTCGAAGGAAGCGAAAAGAAGACTTCGGAAGCCTGCATTAGTGCACTTAGCTTATGCAAAAGTGATAAAGAAGCTCAACTTCTGCAGCTAGGAAATCAGGACAGACATGATGGAGTTTGGCATGCGAGACAGATTGACGAGTACTGAGTGCCAACTACTGCATTCCTCACACTGATTTGAAATGTTATTTTTTTCCCACATTGTTGTTTGATGCATTCTCATCTGGTTTTGTTTTCTGCACAATCTGGCTGATAAAGCCCACCCGTATTGTGCTATGTACAATATTCAGCATAATAGTGGGATAACTGCTGCTGGTGAAGAAAAA ] [-] EMBL AU225937 [ AGACGCAGCAGGTGCGCCACTTCGCCGCCAAGGACAGATCGCGCGCGCCACGGACGCCCACCACCTCCAAGGTCAAGAAGTACAAGATCAAGCCCCCCTCCT CCATG AAGTTTCGATTCAGAG TCATGAATGACGGCCAGGTCCGCAGGTGGA GAGCCGGCAAGCGCCACAATGCTCACCTCAAGTCGAAGGAAGCGAAAAGAAGACTTCGGAAGCCTGCATTAGTGCACTTAGCTTATGCAAAAGTGATAAAGAAGCTCAACTTCTGCAGCTAGGAAATCAGGACAGACATGATGGAGTTTGGCATGCGAGACAGATTGATGAGTACTGAGTGCCAACTACTGCATTCCTCACACTGATTTGAAATGTTATTTTTTTCCCA ATTGTTGTTTGATGCATTCTCATCTGGTTTTGTTTTCTGCACAATCTGGCTGATAAAGCCCACCCGTCTTGTGCTATGTACAATATTCAGCATAATAGTGGGATAACTGCTGCTGGTGAAGAAgcggc ] [+] EMBL AU181180 [ CAGCTAGGNAATCAGGGCANACATGATGGAGTTTGGCATGCGAGACAAATTNATGAGTACTGAGTGCCAACTACTGCATTCCTCACACTGATTTGNAATGTTATTTTTTTCCCA ATTGTTGTTTNATGCATTCTCATCTGGTTTTGTTTTNTGCACAATCTGGCTGATAAAGCCCNCCCGTCTTGTGCTATGNACAATATTCAGCATAATAGTGGGATAACTGCTGCTGGTGAAGAAAAAAAAAAAAAAAAAA] consensusID : consensus_12831#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 426 fasta sequence [GATNCNGCNGTNGTNCGCNGNCNCNTNCGGCCTCGAGCACGNCCTCCTCTCCTCCTCTGTCTCCGCCCCTGCCCACCGCCCTCTTCCGGCGCACCTCATCCCCAGCCCCAGGCATTGCCTTCTCCTCCCGCCACCACCTCTTGACTCCTCCTCTGGGTCTCCATCCCTCCTCCCCACCGCCGATGCAATGGCAGACGCGCAGGTGCGCCACTTCGCCGCCAAGGACAGATCGCGCGNNCACGGACGNCCACCACCTTCAAGGTCAAGAAGTACAAGATCAAGCCCCCCTCCTTCATGAAGTTTCGATTCAGAGTCATGAATGACGGCCAGGTCCGAGGTTGGAGAGCCGGNAAGNGCACAATGTTAACTAAGTTGAAGGAAGCGAAAAGAGGATTCGGAGCTTAATTAGTGANTTAGTTTATGAAA] [+] EMBL C93504 [GATNCNGCNGTNGTNCGCNGNCNCNTNCGGCCTCGAGCACGNCCTCCTCTCCTCCTCTGTCTCCGCCCCTGCCCACCGCCCTCTTCCGGCGCACCTCATCCCCAGCCCCAGGCATTGCCTTCTCCTCCCGCCACCACCTCTTGACTCCTCCTCTGGGTCTCCATCCCTCCTCCCCACCGCCGATGCAATGGCAGACGCGCAGGTGCGCCACTTCGCCGCCAAGGACAGATCGCGCGNNCACGGACGNCCACCACCTTCAAGGTCAAGAAGTACAAGATCAAGCCCCCCTCCTTCATGAAGTTTCGATTCAGAGTCATGAATGACGGCCAGGTCCGAGGTTGGAGAGCCGGNAAGNGCACAATGTTAACTAAGTTGAAGGAAGCGAAAAGAGGATTCGGAGCTTAATTAGTGANTTAGTTTATGAAA] consensusID : consensus_12831#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence [CGCCGCCGCCGGCCTCGGCCTCGGCCGCCGCCTCCTCTCCTCCTCTGTCTCCNNCCCTNCCCACCGCCCTCTTCCGGCGCACCTCANNCCCANCCCCAGGCCATTGCCCTTNTNCNGCCGCCACCACCTCTTGACTCCTCCTCTGGGTCTCCATNCCTCCTNCCCACCGNCGATGCAATGGCAGACGCAGCAGGTGCGCCACTTCGNCGTCAAGGACAGATCGCGCGNGNCACGGACGNCNACCANCTNCAAGGTCAAGAAGTACAAGATCAAGNCCCGGTTCTTCATGAAGTTTTNGATTNAGAGTCATGAATGACGGGCAGGTCCGAAGTGGAGAGCCGGNAAGNGCACAATGGTTAACTTAAGTGGAAGGAAGTGAAAAGAGGATTTTGGAAGCTTGAATTAGTGAATTAG] [+] EMBL OSC11601 [CGCCGCCGCCGGCCTCGGCCTCGGCCGCCGCCTCCTCTCCTCCTCTGTCTCCNNCCCTNCCCACCGCCCTCTTCCGGCGCACCTCANNCCCANCCCCAGGCCATTGCCCTTNTNCNGCCGCCACCACCTCTTGACTCCTCCTCTGGGTCTCCATNCCTCCTNCCCACCGNCGATGCAATGGCAGACGCAGCAGGTGCGCCACTTCGNCGTCAAGGACAGATCGCGCGNGNCACGGACGNCNACCANCTNCAAGGTCAAGAAGTACAAGATCAAGNCCCGGTTCTTCATGAAGTTTTNGATTNAGAGTCATGAATGACGGGCAGGTCCGAAGTGGAGAGCCGGNAAGNGCACAATGGTTAACTTAAGTGGAAGGAAGTGAAAAGAGGATTTTGGAAGCTTGAATTAGTGAATTAG] consensusID : consensus_12831#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 315 fasta sequence [TGCGGCGGTGGTGCGCCGCGCGGCCTCGGCCTCGGTCGCCGCCTCCTCTCCTCCTCTGTCTCCGGCCCTNCCCACCGCCCTCTTCCGGCGCACCTNANGCCCANNCCCAGGCCATTGCCCTTNTANNNCNGCCACCACCTNTTGACTNCTNCTCTGGGTCTCCANNCNTANNNNNNACNGNCGATGCAATGGCAGACGCAGCAGGTGCGNCACTTNGNCGNCAAGGACAGATCGTGNGNGNNANGGACGTCNATNANGTTCAAGGTNAAGAAGTACAAGATNAAGNGGTGGNTGTNATGAAGTTTNGATTNAGAG] [+] EMBL OS0988A [TGCGGCGGTGGTGCGCCGCGCGGCCTCGGCCTCGGTCGCCGCCTCCTCTCCTCCTCTGTCTCCGGCCCTNCCCACCGCCCTCTTCCGGCGCACCTNANGCCCANNCCCAGGCCATTGCCCTTNTANNNCNGCCACCACCTNTTGACTNCTNCTCTGGGTCTCCANNCNTANNNNNNACNGNCGATGCAATGGCAGACGCAGCAGGTGCGNCACTTNGNCGNCAAGGACAGATCGTGNGNGNNANGGACGTCNATNANGTTCAAGGTNAAGAAGTACAAGATNAAGNGGTGGNTGTNATGAAGTTTNGATTNAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12831#0 GATGNGGCGGTGGTGCGCCGCCGCCGGCCTCGGCCTCGGCCGCCGCCTCCTCTCCTCCTC 60 consensus_12831#1 GATNCNGCNGTNGTNCGCNGNCNC---NTNCGGCCTCGAGCACGNCCTCCTCTCCTCCTC 57 consensus_12831#2 ---------------CGCCGCCGCCGGCCTCGGCCTCGGCCGCCGCCTCCTCTCCTCCTC 45 consensus_12831#3 --TGCGGCGGTGGTGCGCCGC-GC-GGCCTCGGCCTCGGTCGCCGCCTCCTCTCCTCCTC 56 *** * * ******** * * *************** consensus_12831#0 TGTCTCCGCCCCTGCCCACCGCCCTCTTCCGGCGCACCTCATCCCCAGCCCCAGGCCATT 120 consensus_12831#1 TGTCTCCGCCCCTGCCCACCGCCCTCTTCCGGCGCACCTCATCCCCAGCCCCAGGC-ATT 116 consensus_12831#2 TGTCTCCNNCCCTNCCCACCGCCCTCTTCCGGCGCACCTCANNCCCANCCCCAGGCCATT 105 consensus_12831#3 TGTCTCCGGCCCTNCCCACCGCCCTCTTCCGGCGCACCTNANGCCCANNCCCAGGCCATT 116 ******* **** ************************* * **** ******* *** consensus_12831#0 GCCCTTCTCCTCCCGCCACCACCTCTTGACTCCTCCTCTGGGTCTCCATCCCTCCTCCCC 180 consensus_12831#1 GCC-TTCTCCTCCCGCCACCACCTCTTGACTCCTCCTCTGGGTCTCCATCCCTCCTCCCC 175 consensus_12831#2 GCCCTTNTNCNGCCGCCACCACCTCTTGACTCCTCCTCTGGGTCTCCATNCCTCCTNCCC 165 consensus_12831#3 GCCCTTNTANNNCNGCCACCACCTNTTGACTNCTNCTCTGGGTCTCCANNCNTANNNNNN 176 *** ** * * ********** ****** ** ************* * * consensus_12831#0 ACCGCCGATGCAATGGCAGACGCAGCAGGTGCGCCACTTCGCCGCCAAGGACAGATCGCG 240 consensus_12831#1 ACCGCCGATGCAATGGCAGACGC-GCAGGTGCGCCACTTCGCCGCCAAGGACAGATCGCG 234 consensus_12831#2 ACCGNCGATGCAATGGCAGACGCAGCAGGTGCGCCACTTCGNCGTCAAGGACAGATCGCG 225 consensus_12831#3 ACNGNCGATGCAATGGCAGACGCAGCAGGTGCGNCACTTNGNCGNCAAGGACAGATCGTG 236 ** * ****************** ********* ***** * ** ************* * consensus_12831#0 CGCGCCACGGACGCCCACCACCTCCAAGGTCAAGAAGTACAAGATCAAGCCCCCCTCCTC 300 consensus_12831#1 CGNNC-ACGGACGNCCACCACCTTCAAGGTCAAGAAGTACAAGATCAAGCCCCCCTCCTT 293 consensus_12831#2 CGNGNCACGGACGNCNACCANCTNCAAGGTCAAGAAGTACAAGATCAAGNCCCGGTTCTT 285 consensus_12831#3 NGNGNNANGGACGTCNATNANGTTCAAGGTNAAGAAGTACAAGATNAAGNGGTGGNTGTN 296 * * ***** * * * * ****** ************** *** * consensus_12831#0 CATGAAGTTT-CGATTCAGAGTCATGAATGACGGCCAGGTCCGCAGGTGGAGAGCCGGCA 359 consensus_12831#1 CATGAAGTTT-CGATTCAGAGTCATGAATGACGGCCAGGTCCGAGGTTGGAGAGCCGGNA 352 consensus_12831#2 CATGAAGTTTTNGATTNAGAGTCATGAATGACGGGCAGGTCCGAAG-TGGAGAGCCGGNA 344 consensus_12831#3 -ATGAAGTTT-NGATTNAGAG--------------------------------------- 315 ********* **** **** consensus_12831#0 AGCGCCACAATGCTCACCTCAAGTCGAAGGAAGCGAAAAGAAGACTTCGGAAGCCTGCAT 419 consensus_12831#1 AGNGC-ACAATGTTAAC--TAAGTTGAAGGAAGCGAAAAGAGGA-TTCGGAG--CTTAAT 406 consensus_12831#2 AGNGC-ACAATGGTTAACTTAAGTGGAAGGAAGTGAAAAGAGGATTTTGGAAGCTTGAAT 403 consensus_12831#3 ------------------------------------------------------------ consensus_12831#0 TAGTGCACTTAGCTTATGCAAAAGTGATAAAGAAGCTCAACTTCTGCAGCTAGGAAATCA 479 consensus_12831#1 TAGTG-ANTTAGTTTATGAAA--------------------------------------- 426 consensus_12831#2 TAGTG-AATTAG------------------------------------------------ 414 consensus_12831#3 ------------------------------------------------------------ consensus_12831#0 GGACAGACATGATGGAGTTTGGCATGCGAGACAGATTGATGAGTACTGAGTGCCAACTAC 539 consensus_12831#1 ------------------------------------------------------------ consensus_12831#2 ------------------------------------------------------------ consensus_12831#3 ------------------------------------------------------------ consensus_12831#0 TGCATTCCTCACACTGATTTGAAATGTTATTTTTTTCCCAATTGTTGTTTGATGCATTCT 599 consensus_12831#1 ------------------------------------------------------------ consensus_12831#2 ------------------------------------------------------------ consensus_12831#3 ------------------------------------------------------------ consensus_12831#0 CATCTGGTTTTGTTTTCTGCACAATCTGGCTGATAAAGCCCACCCGTCTTGTGCTATGTA 659 consensus_12831#1 ------------------------------------------------------------ consensus_12831#2 ------------------------------------------------------------ consensus_12831#3 ------------------------------------------------------------ consensus_12831#0 CAATATTCAGCATAATAGTGGGATAACTGCTGCTGGTGAAGAAAAAGCAAAAAAAAAAA 718 consensus_12831#1 ----------------------------------------------------------- consensus_12831#2 ----------------------------------------------------------- consensus_12831#3 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||