These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12833#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1632 fasta sequence [TTCTCTCCCTCCAATTTGCCCCCTCTTTGTCGTTTTAGGGTTTCCGCGCTCCAACTCCTCCCCAATTCTGGTCCCCGATTCGCGCGATCTCGGCCACCCATGGTCTCCGGCGTCGCCCACCGCCCGGACGACGACGGCGGGCGCGCCGCCTCGACGTTCCAGCGCCCGCCGCAGCCGGCCGGCGCGCGGCCGTCCCTGGCCACGCCGCCGCCCTCGGGCGGAGCGCAATCCGCTTCGACGAGCGGCGGGAGCGCGGGCTCCCCGTCCAGCCGCAGCGAGCAGCATGTCCCCGCAGCCGCAGGCATGGCGGCGGGGGCGGCGGCGGCCTCTACTCCGATTAGTGAGAATACCTTCCTCCGCCTCAACGACCTTGACATCCACGGCGACGATGCGCCTTCCTCACAGGCTCCAACGAGCAAGAAGAAGAAGAGAGGAGCACGAGCAGTTGGTCCTGACAAAGGTGGCAGGGGGCTGCGCCAGTTTAGTATGAAAGTTTGTGAGAAAGTTGAAAGTAAAGGGAGAACAACATACAACGAGGTGGCAGATGAACTTGTTGCCGAATTTGCAGATCCCAATAACAGCATTTTGCCACCAGATCCGGATAATCCCAATGCACAACAATATGAC-GAGAAAAATATACGGAGAAGGGTTTATGATGCTCTGAATGTTCTGATGGCTATGGAGATTATATCTAAAGATAAAAAGGAAATTCAGTGGAAGGGGTTGCCTCGAACCAGTATAAATGATATTGAAGATTTGCAGACGGAACTTGTAGGACTGAAAAGTAGGATTGAGAAGAAAAATACATATTTGCAGGAGCTGCAAGACCAATTTGTAGGTATGCAAAAGTTGATACAAAGAAATGAACAGCTATA-TGGTTCAGGAAACATTCCCT-CGGGTGGAGTTGCATTACCATTTATCCTTGTTCAGACACGGCCTCATGCA-ACTGTGGAAGTTGAAATATCAGAAGATATGCAACTTGTACATTTTGACTTTAATAGCACACCATTTGAGTTGCATGATGACTCATTTGTACTGAAAGCAATGAGTTCTTGTGGAGAAGAACAAATCGACGGTATTCATGATCTAATTTCAAATGGAGGTGAGAGCTCAAGCATGCCAAATATTTATAGGCAGCAAGTGCAGCAACCTGCAAGATCAACTAATGGTACAGCTAGATTGCCAAGCTCACCCCCTATTCCAGGAATACTGAAAGGGCGAGTGAAGCACGAGCATTAGTGTAGTGTGTTTGTTGATTGTTGTCTGGCGTGTTTGGTTTATTATTTTTTATTTTTTTGTGTAAATGGCCTGTAAATTAGTGGGCATTGGAAAAGTAGTTTATTCCGATTTAACGCTGCAGTTTGATTGGTAGAGTGGCGGGTGCCCTGACCAGACCTGTATCACTCCCCGAGTAACTTTTAACCGGCTTTTA-ATCTGTTCCGCCATGGTTGAGAAAAGACGTCTTTTAACGTCATGTAATTGTTTAAAGCATTTTGAAGTAGTTAGCATTTGATCTGAGTGAAATTTCAGCCTTTTGCATGCTTATTGTAGGCATATACATTTGTATTGGATATTTGCGTTAGTTATATGATATACTACTACTTGTCTTAGCAAAAAAAAAAAAAAAAAAAG] [+] EMBL CB641760 [TTCTCTCCCTCCAATTTGCCCCCTCTTTGTCGTTTTAGGGTTTCCGCGCTCCAACTCCTCCCCAATTCTGGTCCCCGATTCGCGCGATCTCGGCCACCCATGGTCTCCGGCGTCGCCCACCGCCCGGACGACGACGGCGGGCGCGCCGCCTCGACGTTCCAGCGCCCGCCGCAGCCGGCCGGCGCGCGGCCGTCCCTGGCCACGCCGCCGCCCTCGGGCGGAGCGCAATCCGCTTCGACGAGCGGCGGGAGCGCGGGCTCCCCGTCCAGCCGCAGCGAGCAGCATGTCCCCGCAGCCGCAGGCATGGCGGCGGGGGCGGCGGCGGCCTCTACTCCGATTAGTGAGAATACCTTCCTCCGCCTCAACGACCTTGACATCCACGGCGACGATGCGCCTTCCTCACAGGCTCCAACGAGCAAGAAGAAGAAGAGAGGAGCACGAGCAGTTGGTCCTGACAAAGGTGGCAGGGGGCTGCGCCAGTTTAGTATGAAAGTTTGTGAGAAAGTTGAAAGTAAAGGGAGAACAACATACAACGAGGTGGCAGATGAACTTGTTGCCGAATTTGCAGATCCCAATAACAGCATTTTGCCACCAGATCCGGATAATCCCAATGCACAACAATATGAC GAGAAAAATATACGGAGAAGGGTTTATGATGCTCTGAATGTTCTGATGGCTATGGAGATTATATCTAAAGATAAAAAGGAAATTCAGTGGAAGGGGTTGCCTCGAACCAGTATAAATGATATTGAAGATTTGCAG ] [+] EMBL CB664894 [ CTCTTTGTCGTTTTAGGGTTTCCGCGCTCCAACTCCTCCCCAATTCTGGTCCCCGATTCGCGCGATCTCGGCCACCCATGGTCTCCGGCGTCGCCCACCGCCCGGACGACGACGGCGGGCGCGCCGCCTCGACGTTCCAGCGCCCGCCGCAGCCGGCCGGCGCGCGGCCGTCCCTGGCCACGCCGCCGCCCTCGGGCGGAGCGCAATCCGCTTCGACGAGCGGCGGGAGCGCGGGCTCCCCGTCCAGCCGCAGCGAGCAGCATGTCCCCGCAGCCGCAGGCATGGCGGCGGGGGCGGCGGCGGCCTCTACTCCGATTAGTGAGAATACCTTCCTCCGCCTCAACGACCTTGACATCCACGGCGACGATGCGCCTTCCTCACAGGCTCCAACGAGCAAGAAGAAGAAGAGAGGAGCACGAGCAGTTGGTCCTGACAAAGGTGGCAGGGGGCTGCGCCAGTTTAGTATGAAAGTTTGTGAGAAAGTTGAAAGTAAAGGGAGAACAACATACAACGAGGTGGCAGATGAACTTGTTGCCGAATTTGCAGATCCCAATAACAGCATTTTGCCACCAGATCCGGATAATCCCAATGCACAACAATATGAC GAGAAAAATATACGGAGAAGGGTTTATGATGCTCTGAATGTTCTGATGGCTATGGAGATTATATCTAAAGATAAAAAGGAAATTCAGTGGAAGGAGTTGCCTCGAACCAGTATAAATGATATTGAAGATTTGCAGACGGAACTTGTAGGACTGAAAA ] [+] EMBL AY224589 [ GGCGTCGCCCACCGCCCGGACGACGACGGCGGGCGCGCCGCCTCGACGTTCCAGCGCCCGCCGCAGCCGGCCGGCGCGCGGCCGTCCCTGGCCACGCCGCCGCCCTCGGGCGGAGCGCAATCCGCTTCGACGAGCGGCGGGAGCGCGGGCTCCCCGTCCAGCCGCAGCGAGCAGCATGTCCCCGCAGCCGCAGGCATGGCGGCGGGGGCGGCGGCGGCCTCTACTCCGATTAGTGAGAATACCTTCCTCCGCCTCAACGACCTTGACATCCACGGCGACGATGCGCCTTCCTCACAGGCTCCAACGAGCAAGAAGAAGAAGAGAGGAGCACGAGCAGTTGGTCCTGACAAAGGTGGCAGGGGGCTGCGCCAGTTTAGTATGAAGGTTTGTGAGAAAGTTGAAAGTAAAGGGAGAACAACATACAACGAGGTGGCAGATGAACTTGTTGCCGAATTTGCAGATCCCAATAACAGCATTTTGCCACCAGATCCGGATAATCCCAATGCACAACAATATGAC GAGAAAAATATACGGAGAAGGGTTTATGATGCTCTGAATGTTCTGATGGCTATGGAGATTATATCTAAAGATAAAAAGGAAATTCAGTGGAAGGGGTTGCCTCGAACCAGTATAAATGATATTGAAGATTTGCAGACGGAACTTGTAGGACTGAAAAGTAGGATTGAGAAGAAAAATACATATTTGCAGGAGCTGCAAGACCAATTTGTAGGTATGCAAAAGTTGATACAAAGAAATGAACAGCTATA TGGTTCAGGAAACATTCCCT CGGGTGGAGTTGCATTACCATTTATCCTTGTTCAGACACGGCCTCATGCA ACTGTGGAAGTTGAAATATCAGAAGATATGCAACTTGTACATTTTGACTTTAATAGCACACCATTTGAGTTGCATGATGACTCATTTGTACTGAAAGCAATGAGTTCTTGTGGAGAAGAACAAATCGACGGTATTCATGATCTAATTTCAAATGGAGGTGAGAGCTCAAGCATGCCAAATATTTATAGGCAGCAAGTGCAGCAACCTGCAAGATCAACTAATGGTACAGCTAGATTGCCAAGCTCACCCCCTATTCCAGGAATACTGAAAGGGCGAGTGAAGCA ] [+] EMBL CF307539 [ catgGACTGAGGAGTAGA AAGGAGAAGGGTTTATGATGCTCTGAATGTTCTGATGGCTATGGAGATTATATCTAAAGATAAAAAGGAAATT AGTGGAAGGGGTTGCCTCGAACCAGTATAAATGATATTGAAGATTTGCAGACGGAACTTGTAGGACTGAAAAGTAGGATTGAGAAGAAAAATACATATTTGCAGGAGCTGCAAGACCAATTTGTAGGTATGCAAAAGTTGATACAAAGAAATGAACAGCTATANTGGTTCAGGAAACATTCCCTNCGGGTGGAGTTGCATTACCATTTATCCTTGTTCAGACACGGCCTCATGCANACTGTGGAAGTTGAAATATCAGAAGATATGCAACTTGTACATTTTGACTTTAATAGCACACCATTTGAGTTGCATGATGACTCATTTGTACTGAAAGCAATGAGTTCTTGTGGAGAAGAAC AATCGACGGTATTCATGATCTAATTTCAATGGGAGGTGAGAGCTCAAGCATGCCAAATATTTATAGGCAGCAAGTGCAGCAACCTGCAAGATCAACTAATGGTACAGCTAGATTGCCAAGCTCACCCCCTATTCCAGG ] [-] EMBL CB664895 [ AGATAAAAAGGGAATTCAGTGGAAGGGGTTGCCTCGAACCAGTATAAATGATATTGAAGATTTGCAGACGGAACTTGTAGGACTGAAAAGTAGGATTGAGAAGAAAAATACATATTTGCAGGAGCTGCAAGACCAATTTGTAGGTATGCAAAAGTTGATACAAAGAAATGAACAGCTATA TGGTTCAGGAAACATTCCCT CGGGGGGAGTTGCATTACCATTTATCCTTGTTCAGACACGGCCTCATGCA ACTGTGGAAGTTGAAATATCAGAAGATATGCAACTTGTACATTTTGACTTTAATAGCACACCATTTGAGTTGCATGATGACTCATTTGTACTGAAAGCAATGAGTTCTTGTGGAGAAGAACAAATCGACGGTATTCATGATTTAATTTCAAATGGAGGTGAGAGCTCAAGCATGCCAAATATTTATAGGCAGCAAGTGCAGCAACCTGCAAGATCAACTAATGGTACAGCTAGATTGCCAAGCTCACCCCCTATTCCAGGAATACTGAAAGGGCGAGTGAAGCACGAGCATTAGTGTAGTGTGTTTGTTGATTGTTGTCTGGCGTGTTTGGTTTATTATTTTTTATTTTTTTGTGTAAATGGCCTGTAAATTAGTGGGCATTGGAAAAGTAGTTTATTCCGATTTAACGCTGCAGTTTGATTGGTAGAGTGGCGGGTGCCCTGACCAGACCTGTATCACTCCCCGAGTAACTTTTAACCGGCTTTTAGATCTGTTCCGCC ] [-] EMBL CB647773 [ ATACAAAGAAATGAACAGCTATA TGGTTCAGGAAACATTCCCT CGGGTGGAGTTGCATTACCATTTATCCTTGTTCAGACACGGCCTCATGCA ACTGTGGAAGTTGAAATATCAGAAGATATGCAACTTGTACATTTTGACTTTAATAGCACACCATTTGAGTTGCATGATGACTCATTTGTACTGAAAGCAATGAGTTCTTGTGGAGAAGAACAAATCGACGGTATTCATGATCTAATTTCAAATGGAGGTGAGAGCTCAAGCATGCCAAATATTTATAGGCAGCAAGTGCAGCAACCTGCAAGATCAACTAATGGTACAGCTAGATTGCCAAGCTCACCCCCTATTCCAGGAATACTGAAAGGGCGAGTGAAGCACGAGCATTAGTGTAGTGTGTTTGTTGATTGTTGTCTGGCGTGTTTGGTTTATTATTTTTTATTTTTTTGTGTAAATGGCCTGTAAATTAGTGGGCATTGGAAAAGTAGTTTATTCCGATTTAACGCTGCAGTCTGATTGGTAGAGTGGCGGGTGCCCTGACCAGACCTGTATCACTCCCCGAGTAACTTCTAACCGGCTTTTA ATCTGTTCCGCCATGGTTGAGAAAAGACGTCTTTTAACGTCATGTAATTGTTTAAAGCATTTTGAAGTAGTTAGCATTTGATCTGAGTGAAATTTCAGCCTTTTGCATGCTTATTGTAGGCATATACATTTGTATTGGATATTTGCGTTAGTTATATGATATACTACTACTTGTCTTAGCA ] [-] EMBL CB641761 [ TTATCCTTGTTCAGACACGGCCTCATGCA ACTGTGGAAGTTGAAATATCAGAAGATATGCAACTTGTACATTTTGACTTTAATAGCACACCATTTGAGTTGCATGATGACTCATTTGTACTGAAAGCAATGAGTTTTTGTGGAGAAGAACAAATCGACGGTATTCATGATTTAATTTCAAATGGAGGTGAGAGCTCAAGCATGCCAAATATTTATAGGCAGCAAGTGCAGCAACCTGCAAGATCAACTAATGGTACAGCTAGATTGCCAAGCTCCCCCCCTATTCCAGGAATACTGAAAGGGGGAGTGAAGCACGAGCATTAGTGTAGTGTGTTTGTTGATTGTTGTTTGGCGTGTTTGGTTTATTATTTTTTATTTTTTTGGGTAAATGGCCTGTAAATTAGTGGGCATTGGAAAAGTAGTTTATTCCGATTTAACGCTGCAGTTTGATTGGTAGAGTGGGGGGTGCCCTGACCAGACCTGTATCACTCCCCGAGTAACTTTTAACCGGCTTTTA ATTTGTTCCGCCATGGTTGAGAAAAGACGTTTTTTAACGTCATGTAATTGTTTAAAGCATTTTGAAGTAGTTAGCATTTGATTTGAGTGAAATTTCAGCCTTTTGCATGCTTATTGTAGGCATATACATTTGTATTGGATATTTGCCTTAGTTATATGATATACTACTACTTGTCTTAAAAAAAAAAAAAAAAAAAAAAG] consensusID : consensus_12833#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1022 fasta sequence [GGCGCGGCGCATTCGGCCTCCACCAGTGGCGGCGGCGGGGGGAGCGAGGGCTCCCCCACCGGCCGCGCCGCGCCGGGCATGCAGGGCGGCGGCAGCGCCGCCACGCCCGCCGCCTCGGCCTCCGCGTCCACGCCGGCCAGCGAGACCACCGTCGCCCGCCGCCTCGACGGCCTCGACATCCAGGGCGACGACGCGCCCTCGTCGCAGCCCGCCACGAGCAAGAAGAAAAAAAGGGGGCCTGGAACACGTGCAACGGGCCCTGACAAGGGTGGCCGTGGATTGCGCCAATTTAGTATGAAAGTTTGTGAGAAAGTTGAAAGCAAAGGGAGAACAACCTACAACGAGGTGGCAGATGAGCTTGTAGCTGAGTTTGCAGACCCCAACAATAATTTTGCATCACCTGATCCTGACAACCCTAACACACCACAATTTGATGAGAAAAATATACGACGAAGGGTTTATGATGCATTGAATGTCCTGATGGCTATGGATATTATATCTAAGGATAAAAAGGAAATTCAGTGGAAGGGCTTGCCTCGGACAAGTATGAGCGATGTTGAAGAATTGAAGACAGAGATCATCGGACTGAAAGGTAGGATCGACAAGAAAAATGCATATTTGCAGGAGTTAGAAGATCAATTTGTAGGTCTTCAAAACTTGGCACAGCGAAACGAGCAGCTTTATGGTTCAGGAAATGCTCCTTCAGGAGGAGTGGCATTGCCATTTATATTGGTGCAGACACGTCCTCATGCTACAGTAGAAGTGGAGATATCAGAAGATATGCAGCTGGTGCATTTTGATTTCAATAGCACTCCATTTGAACTGCATGACGATTCCTTTGTACTGAAAGCATTGGGGTTCTCTGGCAAAGAACCAGATGATACGCAAGCCTGGGTTGGAAATGGAGGTGAGTGCTCAACCACACCTATCTATCATCAATCACCCCAAGTTGCGAGGCCAAACGGAGTTAGACTACCAACATCGCCCCCTATTCCCGGTATACTTAAAGGGCGTGTCAAGCA] [+] EMBL AY224551 [GGCGCGGCGCATTCGGCCTCCACCAGTGGCGGCGGCGGGGGGAGCGAGGGCTCCCCCACCGGCCGCGCCGCGCCGGGCATGCAGGGCGGCGGCAGCGCCGCCACGCCCGCCGCCTCGGCCTCCGCGTCCACGCCGGCCAGCGAGACCACCGTCGCCCGCCGCCTCGACGGCCTCGACATCCAGGGCGACGACGCGCCCTCGTCGCAGCCCGCCACGAGCAAGAAGAAAAAAAGGGGGCCTGGAACACGTGCAACGGGCCCTGACAAGGGTGGCCGTGGATTGCGCCAATTTAGTATGAAAGTTTGTGAGAAAGTTGAAAGCAAAGGGAGAACAACCTACAACGAGGTGGCAGATGAGCTTGTAGCTGAGTTTGCAGACCCCAACAATAATTTTGCATCACCTGATCCTGACAACCCTAACACACCACAATTTGATGAGAAAAATATACGACGAAGGGTTTATGATGCATTGAATGTCCTGATGGCTATGGATATTATATCTAAGGATAAAAAGGAAATTCAGTGGAAGGGCTTGCCTCGGACAAGTATGAGCGATGTTGAAGAATTGAAGACAGAGATCATCGGACTGAAAGGTAGGATCGACAAGAAAAATGCATATTTGCAGGAGTTAGAAGATCAATTTGTAGGTCTTCAAAACTTGGCACAGCGAAACGAGCAGCTTTATGGTTCAGGAAATGCTCCTTCAGGAGGAGTGGCATTGCCATTTATATTGGTGCAGACACGTCCTCATGCTACAGTAGAAGTGGAGATATCAGAAGATATGCAGCTGGTGCATTTTGATTTCAATAGCACTCCATTTGAACTGCATGACGATTCCTTTGTACTGAAAGCATTGGGGTTCTCTGGCAAAGAACCAGATGATACGCAAGCCTGGGTTGGAAATGGAGGTGAGTGCTCAACCACACCTATCTATCATCAATCACCCCAAGTTGCGAGGCCAAACGGAGTTAGACTACCAACATCGCCCCCTATTCCCGGTATACTTAAAGGGCGTGTCAAGCA] consensusID : consensus_12833#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 768 fasta sequence [TCATTTCTTTCTCTCCCTCCAATTTGCCCCCTCTTTGTCGTTTTAGGGTTTCCGCGCTCCAACTCCTCCCCAATTCTGGTCCCCGATTCGCGCGATCTCGGCCACCCATGGTCTCCGGCGTCGCCCACCGCCCGGACGACGACGGCGGGCGCGCCGCCTCGACGTTCCAGCGCCCGCCGCAGCCGGCCGGCGCGCGGCCGTCCCTGGCCACGCCGCCGCCCTCGGGCGGAGCGCAATCCGCTTCGACGAGCGGCGGGAGCGCGGGCTCCCCGTCCAGCCGCAGCGAGCAGCATGTCCCCGCAGCCGCAGGCATGGCGGCGGGGGCGGCGGCGGCCTCTACTCCGATTAGTGAGAATACCTTCCTCCGCCTCAACGACCTTGACATCCACGGCGACGATGCGCCTTCCTCACAGGCTCCAACGAGCAAGAAGAAGAAGAGAGGAGCACGAGCAGTTGGTCCTGACAAAGGTGGCAGGGGGCTGCGCCAGTTTAGTATGAAAGTTTGTGAGAAAGTTGAAAGTAAAGGGAGAACAACATACAACGAGGTGGCAGATGAACTTGTTGCCGAATTTGCAGATCCCAATAACAGCATTTTGCCACCAGATCCGGATAATCCCAATGCAGTTGAGAAATGACTTGCCTGCATCACCAATTATTTCTTAAGTCAGTTGTATGCTCACTTTGTGTTAAATGCAGCAACAATATGACGAGAAAAATATACGGAGAACGGTTTATGATGCTCTGAATGTTCTGATGGCTATGGAGATT] [+] EMBL CB647772 [TCATTTCTTTCTCTCCCTCCAATTTGCCCCCTCTTTGTCGTTTTAGGGTTTCCGCGCTCCAACTCCTCCCCAATTCTGGTCCCCGATTCGCGCGATCTCGGCCACCCATGGTCTCCGGCGTCGCCCACCGCCCGGACGACGACGGCGGGCGCGCCGCCTCGACGTTCCAGCGCCCGCCGCAGCCGGCCGGCGCGCGGCCGTCCCTGGCCACGCCGCCGCCCTCGGGCGGAGCGCAATCCGCTTCGACGAGCGGCGGGAGCGCGGGCTCCCCGTCCAGCCGCAGCGAGCAGCATGTCCCCGCAGCCGCAGGCATGGCGGCGGGGGCGGCGGCGGCCTCTACTCCGATTAGTGAGAATACCTTCCTCCGCCTCAACGACCTTGACATCCACGGCGACGATGCGCCTTCCTCACAGGCTCCAACGAGCAAGAAGAAGAAGAGAGGAGCACGAGCAGTTGGTCCTGACAAAGGTGGCAGGGGGCTGCGCCAGTTTAGTATGAAAGTTTGTGAGAAAGTTGAAAGTAAAGGGAGAACAACATACAACGAGGTGGCAGATGAACTTGTTGCCGAATTTGCAGATCCCAATAACAGCATTTTGCCACCAGATCCGGATAATCCCAATGCAGTTGAGAAATGACTTGCCTGCATCACCAATTATTTCTTAAGTCAGTTGTATGCTCACTTTGTGTTAAATGCAGCAACAATATGACGAGAAAAATATACGGAGAACGGTTTATGATGCTCTGAATGTTCTGATGGCTATGGAGATT] consensusID : consensus_12833#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence [TGGAAGTTGAAATATCAGAAGATATGCAACTTGTACATTTTGACTTTAATAGCACACCATTTGAGTTGCATGATGACTCATTTGTACTGAAAGCAATGAGTTCTTGTGGAGAAGAACAAATCGACGGTATTCATGATCTAATTTCAAATGGAGGTGAGAGCTCAAGCATGCCAAATATTTATAGGCAGCAAGTGCAGCAACCTGCAAGATCAACTAATGGTACAGCTAGATTGCCAAGCTCACCCCCTATTCCAGGAATACTGAAAGGGCGAGTGAAGCACGAGCATTAGTGTAGTGTGTTTGTTGATTGTTGTCTGGCGTGTTTGGTTTATTATTTTTTATTTTTTTGTGTAAATGGCCTGTAAATTAGTGGGCATTGGAAAAGTAGTTTATTCCGATTTAACGCTGCAGTCTGATTGGTAGAGTGGCGGGTGCCCTGACCAGACCTGTATCACTCCCCGAGTAACTTCTAACCGGCTTTTAATCTGTTCCGCCATGGTTGAGAAAAGACGTCTTTTAACGTCATGTAATTGTTTAAAGCATTTTGAAGTAGTTAAAAAAAAAAAA] [-] EMBL CF307540 [TGGAAGTTGAAATATCAGAAGATATGCAACTTGTACATTTTGACTTTAATAGCACACCATTTGAGTTGCATGATGACTCATTTGTACTGAAAGCAATGAGTTCTTGTGGAGAAGAACAAATCGACGGTATTCATGATCTAATTTCAAATGGAGGTGAGAGCTCAAGCATGCCAAATATTTATAGGCAGCAAGTGCAGCAACCTGCAAGATCAACTAATGGTACAGCTAGATTGCCAAGCTCACCCCCTATTCCAGGAATACTGAAAGGGCGAGTGAAGCACGAGCATTAGTGTAGTGTGTTTGTTGATTGTTGTCTGGCGTGTTTGGTTTATTATTTTTTATTTTTTTGTGTAAATGGCCTGTAAATTAGTGGGCATTGGAAAAGTAGTTTATTCCGATTTAACGCTGCAGTCTGATTGGTAGAGTGGCGGGTGCCCTGACCAGACCTGTATCACTCCCCGAGTAACTTCTAACCGGCTTTTAATCTGTTCCGCCATGGTTGAGAAAAGACGTCTTTTAACGTCATGTAATTGTTTAAAGCATTTTGAAGTAGTTAAAAAAAAAAAA] consensusID : consensus_12833#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence [GGCCCTGGCCAGACCTGTATCACTCCCCGAGGAACTTTTAACCGGGTTTTAATTTGTTCCCCCCAGGTTGAGAAAAAAAGTTTTTTAACGTCAAGGAATTGTTTAAAGCCTTTTGAAGTAGTTAGCCTTTGATTTGAGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF315088 [GGCCCTGGCCAGACCTGTATCACTCCCCGAGGAACTTTTAACCGGGTTTTAATTTGTTCCCCCCAGGTTGAGAAAAAAAGTTTTTTAACGTCAAGGAATTGTTTAAAGCCTTTTGAAGTAGTTAGCCTTTGATTTGAGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12833#1 ------------------------------------------------------------ consensus_12833#2 ------------------------------------------------------------ consensus_12833#0 TTCTCTCCCTCCAATTTGCCCCCTCTTTGTCGTTTTAGGGTTTCCGCGCTCCAACTCCTC 60 consensus_12833#3 ------------------------------------------------------------ consensus_12833#4 ------------------------------------------------------------ consensus_12833#1 ------------------------------------------------------------ consensus_12833#2 ------------------------------------------------------------ consensus_12833#0 CCCAATTCTGGTCCCCGATTCGCGCGATCTCGGCCACCCATGGTCTCCGGCGTCGCCCAC 120 consensus_12833#3 ------------------------------------------------------------ consensus_12833#4 ------------------------------------------------------------ consensus_12833#1 ------------------------------------------------------------ consensus_12833#2 ------------------------------------------------------------ consensus_12833#0 CGCCCGGACGACGACGGCGGGCGCGCCGCCTCGACGTTCCAGCGCCCGCCGCAGCCGGCC 180 consensus_12833#3 ------------------------------------------------------------ consensus_12833#4 ------------------------------------------------------------ consensus_12833#1 ---------------GGCGCGGCGCATTCGGCCTCCACCAGTGGCG---GCGGCGGGGGG 42 consensus_12833#2 ----------------TCATTTCTTTCTCTCCCTCCAATT-TGCCC---CCTCTTTGTCG 40 consensus_12833#0 GGCGCGCGGCCGTCCCTGGCCACGCCGCCGCCCTCGGGCGGAGCGCAATCCGCTTCGACG 240 consensus_12833#3 ------------------------------------------------------------ consensus_12833#4 ------------------------------------------------------------ consensus_12833#1 AGCGA-GGGCTCCCCCACCGGCCGCGCCGCGCCGG-GCATGCAGGGCGGCGGCA-GCGCC 99 consensus_12833#2 TTTTA-GGGTTTCCGCGCTC-CAACTCCTCCCCA----ATTCTGGTCCCCGATTCGCGCG 94 consensus_12833#0 AGCGGCGGGAGCGCGGGCTCCCCGTCCAGCCGCAGCGAGCAGCATGTCCCCGCAGCCGCA 300 consensus_12833#3 ------------------------------------------------------------ consensus_12833#4 ------------------------------------------------------------ consensus_12833#1 GCCACGCCCGCCGCCTCGGCCTCCGCGTCCACGCCGGCCAGCGAGACCACCGTCGCC-CG 158 consensus_12833#2 ATCTCGGCCACC-CATGGTCTCCGGCGTCGCCCACCGCCCGGACGACGACGGCGGGCGCG 153 consensus_12833#0 GGCATGGCGGCGGGGGCGGCGGCGGCCTCTACTCCGATTAGTGAGAATACCTTC----CT 356 consensus_12833#3 ------------------------------------------------------------ consensus_12833#4 ------------------------------------------------------------ consensus_12833#1 CCGCCTCGACGGCCTCGACATCCAGGGCGACGACGCGCCCTCGTCGCAGCCCGCCACGAG 218 consensus_12833#2 CCGCCTCGACG-TTCCAGCGCCC---GCCGCAGCCGGCCGGCG-CGCGGCCGTCCCTGGC 208 consensus_12833#0 CCGCCTCAACGACCTTGACATCCACGGCGACGATGCGCCTTCCTCACAGGCTCCAACGAG 416 consensus_12833#3 ---------------TGGAAGTTGAAATATCAGAAGATATGCAACTTGTACATTTTGACT 45 consensus_12833#4 ------------------------------------------------------------ consensus_12833#1 CAAGAAGAAAAAAAGGGGGCCTGGAACACGTGCAACGGGCCCTGACAAG-GGTGGCCGTG 277 consensus_12833#2 CACGCCGCC-------GCCCTCGGGCGGAGCGCAATCCGCTTCGACGAGCGGCGGGAGCG 261 consensus_12833#0 CAAGAAGAA------GAAGAGAGGAGCACGAGCAGTTGGTCCTGACAAA-GGTGGCAGGG 469 consensus_12833#3 TTAATAGCACACCATTTGAGTTGCATGATGACTCATTTGTACTGAAAGCAATGAGTTCTT 105 consensus_12833#4 ------------------------------------------------------------ consensus_12833#1 GATTGCGCCAATTTAGTATGAAAGTTTGTGAGAAAGTTGAAAGCAAAGGGAGAACAACCT 337 consensus_12833#2 CGGGCTCCCCGTCCAGCCGCAGCGAGCAGCATGTCCCCGCAGCCGCAGGCATGGCGGCGG 321 consensus_12833#0 GGCTGCGCCAGTTTAGTATGAAAGTTTGTGAGAAAGTTGAAAGTAAAGGGAGAACAACAT 529 consensus_12833#3 GTGGAGAAGAACAAATCGACGGTATTCATGATCTAATTTCAAATGGAGGTGAGAGCTCAA 165 consensus_12833#4 ------------------------------------------------------------ consensus_12833#1 ACAACGAGGTGGCAGATGAGCTTGTAGCTGAGTTTGCAGACCCCAAC---AATAATTTTG 394 consensus_12833#2 GGGCGGCGGCGGCCTCTACTCCGATTAGTGAGAATACCTTCCTCCGCCTCAACGACCTTG 381 consensus_12833#0 ACAACGAGGTGGCAGATGAACTTGTTGCCGAATTTGCAGATCCCAAT---AACAGCATTT 586 consensus_12833#3 GCATGCCAAATATTTATAGGCAGCAAGTGCAGCAACCTGCAAGATCAACTAATGGTACAG 225 consensus_12833#4 ------------------------------------------------------------ consensus_12833#1 CATCACCTGATCCTGACAACCCTAACACACCACAATTTGATGAGAAAAATATACGACGAA 454 consensus_12833#2 ACATCCACGGCGACGATGCGCCTTCCTCAC-AGGCTCCAACGAGCAAGA-AGAAGAAGAG 439 consensus_12833#0 TGCCACCAGATCCGGATAATCCCAATGCACAACAATATGACGAGAAAAATATACGGAGAA 646 consensus_12833#3 CTAGATTGCCAAGCTCACCCCCTATTCCAGGAATACTGAAAGGGCGAGTGAAGCACGAGC 285 consensus_12833#4 ------------------------------------------------------------ consensus_12833#1 GGGTTTATGATGCATTGAATG-----TCCTGATGGCTATGGATATTATATCTAAGGATAA 509 consensus_12833#2 AGGAGCACGAGCAGTTG---G-----TCCTGACAAAGGTGGC-----------AGGGGGC 480 consensus_12833#0 GGGTTTATGATGCTCTGAATG-----TTCTGATGGCTATGGAGATTATATCTAAAGATAA 701 consensus_12833#3 ATTAGTGTAGTGTGTTTGTTGATTGTTGTCTGGCGTGTTTGGTTTATTATTTTTTATTTT 345 consensus_12833#4 ------------------------------------------------------------ consensus_12833#1 AAAGGAAATTCAGTGGAAGGGCTTGCCTCGGACAAGTATGAGCGATGTTGAAGAATTGAA 569 consensus_12833#2 TGCGCCAGTTTAGTATGAAAGTTTGT----GAGAAAGTTGAAAG----TAAAGG---GAG 529 consensus_12833#0 AAAGGAAATTCAGTGGAAGGGGTTGCCTCGAACCAGTATAAATGATATTGAAGATTTGCA 761 consensus_12833#3 TTTGTGTAAATGGCCTGTAAATTAGTGGGCATTGGAAAAGTAGTTTATTCCGATTTAACG 405 consensus_12833#4 ------------------------------------------------------------ consensus_12833#1 GACAGAGATCATCGGACTGAAAGGTAGGATCGACAAGAAAAATGCATATTTGCAGGAGTT 629 consensus_12833#2 AACAACATACAACGAGGTGGCAGATGAACTTGTTGCCGAATTTGCAGATCCCAATAA--C 587 consensus_12833#0 GACGGAACTTGTAGGACTGAAAAGTAGGATTGAGAAGAAAAATACATATTTGCAGGAGCT 821 consensus_12833#3 CTGCAGTCTGATTGGTAGAGTGGCGGGTGCCCTGACCAGACCTGTATCACTCCCCGA--- 462 consensus_12833#4 ---------------------------GGCCCTGGCCAGACCTGTATCACTCCCCGA--- 30 * * * * consensus_12833#1 AGAAGATCAATTTGTAGGTCTTCAAAA-CTTGGCACAGCGAAACGAGCAGCTTTATGGTT 688 consensus_12833#2 AGCATTTTGCCAC-CAGATCCGGATAATCCCAATGCAGTTGAGAAATGACTTGCCTGCAT 646 consensus_12833#0 GCAAGACCAATTTGTAGGTATGCAAAA-GTTGATACAAAGAAATGAACAGCTATATGGTT 880 consensus_12833#3 -GTAACTTCTAACCGGCTTTTAATCTGTTCCGCCATGGTTGAGAAAAGACGTCTTTTAAC 521 consensus_12833#4 -GGAACTTTTAACCGGGTTTTAATTTGTTCCCCCCAGGTTGAGAAAAAAAGTTTTTTAAC 89 * * * * * * * consensus_12833#1 CAGGAAATGCTCCTTCAGGAGGAGTGGCATTGCCA---TTTATATTGG-TGCAGACACGT 744 consensus_12833#2 CACCAATTATTTCTTAAGTC--AGTTGTATGCTCAC--TTTGTGTTAAATGCAGCAACA- 701 consensus_12833#0 CAGGAAACATTCCCTCGGGTGGAGTTGCATTACCA---TTTATCCTTG-TTCAGACACGG 936 consensus_12833#3 GTCATGTAATTGTTTAAAGCATTTTGAAGTAGTTA-----------------AAAAAAAA 564 consensus_12833#4 GTCAAGGAATTGTTTAAAGCCTTTTGAAGTAGTTAGCCTTTGATTTGAGGTGAAAAAAAA 149 * * * * * * * consensus_12833#1 CCTCATGCTACAGTAGAAGTGGAGATATCAGAAGATATGCAGCTG-GTGCATTTTGATTT 803 consensus_12833#2 ----ATATGACGAGAAAAATATACGGAGAACGGTTTATGATGCTCTGAATGTTCTGATGG 757 consensus_12833#0 CCTCATGCAACTGTGGAAGTTGAAATATCAGAAGATATGCAACTT-GTACATTTTGACTT 995 consensus_12833#3 AAA--------------------------------------------------------- 567 consensus_12833#4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------- 186 consensus_12833#1 CAATAGCACTCCATTTGAACTGCATGACGATTCCTTTGTACTGAAAGCATTGGGGTTCTC 863 consensus_12833#2 CTATGGAGATT------------------------------------------------- 768 consensus_12833#0 TAATAGCACACCATTTGAGTTGCATGATGACTCATTTGTACTGAAAGCAATGAGTTCTTG 1055 consensus_12833#3 ------------------------------------------------------------ consensus_12833#4 ------------------------------------------------------------ consensus_12833#1 TGGCAAAGAACCA---GATGATACGCAAGCCTGGGTTGGAAATGGAGGTGAGTGCTCAAC 920 consensus_12833#2 ------------------------------------------------------------ consensus_12833#0 TGGAGAAGAACAAATCGACGGTATTCATGATCTAATTTCAAATGGAGGTGAGAGCTCAAG 1115 consensus_12833#3 ------------------------------------------------------------ consensus_12833#4 ------------------------------------------------------------ consensus_12833#1 CACACC---TATCTAT---CATCAATCACCCCAAGTTGCGAGGCCAAACGG------AGT 968 consensus_12833#2 ------------------------------------------------------------ consensus_12833#0 CATGCCAAATATTTATAGGCAGCAAGTGCAGCAACCTGCAAGATCAACTAATGGTACAGC 1175 consensus_12833#3 ------------------------------------------------------------ consensus_12833#4 ------------------------------------------------------------ consensus_12833#1 TAGACTACCAACATCGCCCCCTATTCCCGGTATACTTAAAGGGCGTGTCAAGCA------ 1022 consensus_12833#2 ------------------------------------------------------------ consensus_12833#0 TAGATTGCCAAGCTCACCCCCTATTCCAGGAATACTGAAAGGGCGAGTGAAGCACGAGCA 1235 consensus_12833#3 ------------------------------------------------------------ consensus_12833#4 ------------------------------------------------------------ consensus_12833#1 ------------------------------------------------------------ consensus_12833#2 ------------------------------------------------------------ consensus_12833#0 TTAGTGTAGTGTGTTTGTTGATTGTTGTCTGGCGTGTTTGGTTTATTATTTTTTATTTTT 1295 consensus_12833#3 ------------------------------------------------------------ consensus_12833#4 ------------------------------------------------------------ consensus_12833#1 ------------------------------------------------------------ consensus_12833#2 ------------------------------------------------------------ consensus_12833#0 TTGTGTAAATGGCCTGTAAATTAGTGGGCATTGGAAAAGTAGTTTATTCCGATTTAACGC 1355 consensus_12833#3 ------------------------------------------------------------ consensus_12833#4 ------------------------------------------------------------ consensus_12833#1 ------------------------------------------------------------ consensus_12833#2 ------------------------------------------------------------ consensus_12833#0 TGCAGTTTGATTGGTAGAGTGGCGGGTGCCCTGACCAGACCTGTATCACTCCCCGAGTAA 1415 consensus_12833#3 ------------------------------------------------------------ consensus_12833#4 ------------------------------------------------------------ consensus_12833#1 ------------------------------------------------------------ consensus_12833#2 ------------------------------------------------------------ consensus_12833#0 CTTTTAACCGGCTTTTAATCTGTTCCGCCATGGTTGAGAAAAGACGTCTTTTAACGTCAT 1475 consensus_12833#3 ------------------------------------------------------------ consensus_12833#4 ------------------------------------------------------------ consensus_12833#1 ------------------------------------------------------------ consensus_12833#2 ------------------------------------------------------------ consensus_12833#0 GTAATTGTTTAAAGCATTTTGAAGTAGTTAGCATTTGATCTGAGTGAAATTTCAGCCTTT 1535 consensus_12833#3 ------------------------------------------------------------ consensus_12833#4 ------------------------------------------------------------ consensus_12833#1 ------------------------------------------------------------ consensus_12833#2 ------------------------------------------------------------ consensus_12833#0 TGCATGCTTATTGTAGGCATATACATTTGTATTGGATATTTGCGTTAGTTATATGATATA 1595 consensus_12833#3 ------------------------------------------------------------ consensus_12833#4 ------------------------------------------------------------ consensus_12833#1 ------------------------------------- consensus_12833#2 ------------------------------------- consensus_12833#0 CTACTACTTGTCTTAGCAAAAAAAAAAAAAAAAAAAG 1632 consensus_12833#3 ------------------------------------- consensus_12833#4 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||