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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12837#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 779 fasta sequence
[GGCCGATTTGGTTACGGGCCCCCCCTTCGAGNTCGCCCCACGCGTCATCAACCTCATCC-TCACTCCACAGATAACAGCCATGG-TAACAAGCAAGAAGGTACAGAACAACGAAGCTGCAATGGCGGACGGCGCTGTTAAGGAATATCGCCATGGTCTGTGCATGGATGTCCCGATGTACATTGAAGATTCGGAGTATTGTGGAGAGGAGCTTGGCACCAGACTAACTTGCAGGCATGGCCTCACGCCGAAACGGAGGACAGCTTGGGAAGGACCTGACACAGGAAGAAGGTTCTTAGGTTGTCCGCTGGAGGAAGAGGATCAGTGCGATAAATTTTTTT-GGGTCGACGAACCATGGCACCCAAGAGTTCAGAAGACACTTGAGCAGATGTGGCATGCAGTGGAACGTGCTACCAAGCTAACCGGTTCGAAACAATATGACTGGTGTTGTTTCGTTCGGAATACAAAGGCCGAGGAAGAAAAAATGAAGTTAGAGTTAGATACGGCTGACCATATCTCTGAACTAGAATTGGCGTATAAAAAAAATTAATGAAAAAGAAAAAAGAGCTCGACGATACTCGTGCGTGGTTAATGGGATCGTTTGTAGTAATTGTCATTATGTTAGTGAAAATTAGTGATCTCATGTACAACAAGTGATTACATTGGATGTAATATTTTCTTTAAACTTCCAACTTTTCCATCAAAATTATCCTACACACCCTAATGTTAATTTTTCGACGGAACTGCATTCATACTTAAACCGTGTAAATGCATAGTTTTGT]
[+] EMBL C96975 [GGCCGATTTGGTTACGGGCCCCCCCTTCGAGNTCGCCCCACGCGTCNGCACCTTCATCCTTCACTCCACAGTTAACAGCCATGGTTAACAAGCAAGAAGTTACAGAACAACGAAGCTGCAATGGCGGACGGCGCTGTTAAGGAATATCGCCATGGTCTGTGCATGGATGTCCCGATGTACATTGAAGATTCGGAGTATTGTGGAGAGGAGCTTGGCACCAGACTAACTTGCAGGCATGGCCTCACGCCGAAACGGAGGACAGCTTGGGAAGGACCTGACACAGGAAGAAGGTTCTTAGGTTGTCCGCTGGAGGAAGAGGATCAGTGCGATAAATTTTTTT GGGTCGACGAACCATGGCACCCAAGAGTTCAGAAGACACTTGAGCAGATGTGGCATGCAGTGGAACGTGCTACCAAGCTAACCGGTTCGAAACAATATGACTGGTGTTGTTTCGTTCGGAATACAAAGGCCGAGGAAGAAAAAATGAAGTTAGAGTTAGATACGGCTGACCATATCTCTGAACTAGAATTGGCGTATAAAAAAAATTAATGAAAAAGAAAAAAGAGCTCGACGATACTCGTGCGTGGTTAATGGGATCGTTTGTAGTAATTGTCATTATGTTAGTGAAAATTAGTGATCTCATGTACAAAAAa ]
[+] EMBL AK121785 [ gcatcCATCAACCTCATCC TCACTCCACAGATAACAGCCATGG TAACAAGCAAGAAGGTACAGAACAACGAAGCTGCAATGGCGGACGGCGCTGTTAAGGAATATCGCCATGGTCTGTGCATGGATGTCCCGATGTACATTGAAGATTCGGAGTATTGTGGAGAGGAGCTTGGCACCAGACTGACTTGCAGGCATGGCCTCACGCCGAAACGGAGGACAGCTTGGGAAGGACCTGACACAGGAAGAAGGTTCTTAGGTTGTCCGCTGGAGGAAGAGGATCAGTGCGATAAATTTTTTT GGGTCGACGAACCATGGCACCCAAGAGTTCAGAAGACACTTGAGCAGATGTGGCATGCAGTGGAACGTGCTACCAAGCTAACCGGTTCGAAACAATATGACTGGTGTTGTTTCGTTCGGAATACAAAGGCCGAGGAAGAAAAAATGAAGTTAGAGTTAGATACGGCTGACCATATCTCTGAACTAGAATTGGCGTATAAAAAAAATTAATGAAAAAGAAAAAAGAGCTCGACGATACTCGTGCGTGGTTAATGGGATCGTTTGTAGTAATTGTCATTATGTTAGTGAAAATTAGTGATCTCATGTACAACAAGTGATTACATTGGATGTAATATTTTCT ]
[+] EMBL AK064056 [ ATCAACCTCATCC TCACTCCACAGATAACAGCCATGG TAACAAGCAAGAAGGTACAGAACAACGAAGCTGCAATGGCGGACGGCGCTGTTAAGGAATATCGCCATGGTCTGTGCATGGATGTCCCGATGTACATTGAAGATTCGGAGTATTGTGGAGAGGAGCTTGGCACCAGACTAACTTGCAGGCATGGCCTCACGCCGAAACGGAGGACAGCTTGGGAAGGACCTGACACAGGAAGAAGGTTCTTAGGTTGTCCGCTGGAGGAAGAGGATCAGTGCGATAAATTTTTTT GGGTCGACGAACCATGGCACCCAAGAGTTCAGAAGACACTTGAGCAGATGTGGCATGCAGTGGAACGTGCTACCAAGCTAACCGGTTCGAAACAATATGACTGGTGTTGTTTCGTTCGGAATACAAAGGCCGAGGAAGAAAAAATGAAGTTAGAGTTAGATACGGCTGACCATATCTCTGAACTAGAATTGGCGTATAAAAAAAATTAATGAAAAAGAAAAAAGAGCTCGACGATACTCGTGCGTGGTTAATGGGATCGTTTGTAGTAATTGTCATTATGTTAGTGAAAATTAGTGATCTCATGTACAACAAGTGATTACATTGGATGTAATATTTTCTTTAAACTTCCAACTTTTCCATCAAAATTATCCTACACACCCTAATGTTAATTTTTCGACGGAACTGCATTCATACTTAAACCGTGTAAATGCATAGTTTTGT]
[+] EMBL C97208 [ TCAACCTCATCC TCACTCCACAGATAACAGCCATGG TAACAAGCAAGAAGGTACAGAACAACGAAGCTGCAATGGCGGACGGCGCTGTTAAGGAATATCGCCATGGTCTGTGCATGGATGTCCCGATGTACATTGAAGATTCGGAGTATTGTGGAGAGGAGCTTGGCACCAGACTAACTTGCAGGCATGG CTCACGCCGAAACGGAGGACAGCTTGGGAAGGACCTGACACAGGAAGAAGGTTCTTAGGTTGTCCGCTGGAGGAAGAGGATCAGTGCGATAAATTTTTTTGGGGTCGACGAACCATGGCACCCAAGAGTTCAGAAGACACTTGAGCAGATGTGGCATGCAGTNGAACGTGCT ]
[+] EMBL OS0571A [ CC TCACTCCACAGATAACAGCCATGG TAACAAGCAAGAAGGTACAGAACAACGAAGCTGCAATGGCGGACGGCGCTGTTAAGGAATATCGCCATGGTCTGTGCATGGATGTCCCGATGTACATTGAAGATTCGGAGTATTGTGGAGAGGAGCTTGGCACCAGACTAACTTGCAGGCATGGCCTCACGCCGAAACGGAGGACAGCTTGGGAAGGACCTGACACAGGAAGAAGGTTCTTAGGTTGTCCGCTGGAGGAAGAGGATCAGTGCGATAAATTTTTTT GGGTCGACGAACCATGGCACCCAAGAGTTCAGAAGACACTTGAGCAGATGTGGCATGCAGTGGAACGTGCTACCAAGCTAACCGGTTCGAAACANTATGACTGGTGTTGTTTCGTTC ]
[+] EMBL AU093244 [ CC TCACTCCACAGATAACAGCCATGG TAACAAGCAAGAAGGTACAGAACAACGAAGCTGCAATGGCGGACGGCGCTGTTAAGGAATATCGCCATGGTCTGTGCATGGNTGTCCCGATGTACATTGAAGATTCGGAGTATTGTGGAGAGGAGCTTGGCACCAGACTAACTTGCAGGCATGGCCTCACGCCGAAACGGAGGACAGCTTGGGAAGGACCTGACACAGGAAGAAGGTTCTTAGGTTGTCCGCTGGAGGAAGAGGATCAGTGCGATAAATTTTTTT GGGTCGACGAACCATGGCACCCAAGAGTTCAGAAGNCACTTGAGCAGNTGTGGCATGCAGTTGAACGTGCTACCATGCTAACCGGTTCGAAACAATATGACTGGTGTTGTTTCGTTCGGAATACAAA ]
[-] EMBL CF329640 [ CTTGGGAAGGACCTGACACAGGAAGAAGGTTCTTAGGTTGTCCGCTGGAGGAAGAGGATCAGTGCGATAAATTTTTTT GGGTCGACGAACCATGGCACCCAAGAGTTCAGAAGACACTTGAGCAGATGTGGCATGCAGTGGAACGTGCTACCAAGCTAACCGGTTCGAAACAATATGACTGGTGTTGTTTCGTTCGGAATACAAAGGCCGAGGAAGAAAAAATGAAGTTAGAGTTAGATACGGCTGACCATATCTCTGAACTAGAATTGGCGTATAAAAAAAATTAATGAAAAAGAAACAAGAGCTCGACGATACTCGTGCGTGGTTAATGGGATCGTTTGTAGTAATTGTCAATATGTTAGTGAAAATTAGTGACCTCATGTACAACAAGTGATTACATTGGATGTAATATTTTCTTTAAACTTCCAACTTTTCCATCAAAATTATCCTACACACCCTAATGTTAATTTTTCGACGGAACTGCATTCATAaaaaaa ]
consensusID : consensus_12837#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 544 fasta sequence
[ATCCATCAACCTCATCCTCACTCCACAGATAACAGCCATGGTAACAAGCAAGAAGGTACAGAACAACGAAGCTGCAATGGCGGACGGCGCTGTTAAGGAATATCGCCATGGTCTGTGCATGGATGTCCCGATGTACATTGAAGATTCGGAGTATTGTGGAGAGGAGCTTGGCACCAGACTAACTTGCAGGCATGGCCTCACGCCGAAACGGAGGACAGCTTGGGAAGGACCTGACACAGGAAGAAGGTTCTTAGGTTGTCCGCTGGAGGAAGAGGATCATTGCGATAAATTTTTTTGGGTCGACGAACCATGGCACCCAAGAGTTCAGAAGACACTTGAGCAGATGTGGCATGCAGTGGAACGTGCTACCAAGCTAACCGGTTCGAAACAATATGACGGGTGTTGTTTCGTTCGGAATACAAAGGCCGAGGAAGAAAAAATGAAGTTAGAGTTAGATACGGCTGACCATATCTCTGAACTAGAATTGGCGTATAAAAAAAAAAAAAAAAAAACAATGTCATGCCGTTAGTAGCGTATCGTTGAC]
[+] EMBL CF331293 [ATCCATCAACCTCATCCTCACTCCACAGATAACAGCCATGGTAACAAGCAAGAAGGTACAGAACAACGAAGCTGCAATGGCGGACGGCGCTGTTAAGGAATATCGCCATGGTCTGTGCATGGATGTCCCGATGTACATTGAAGATTCGGAGTATTGTGGAGAGGAGCTTGGCACCAGACTAACTTGCAGGCATGGCCTCACGCCGAAACGGAGGACAGCTTGGGAAGGACCTGACACA GAAGAAGGTTCTTAGGTTGTCCGCTGGAGGAAGAGGATCATTGCGATAAATTTTTTTGGGTCGACGAACCATGGCACCCAAGAGTTCAGAAGACACTTGAGCAGATGTGGCATGCAGTGGAACGTGCTACCAAGCTAACCGGTTCGAAACAATATGACGGGTGTTGTTTCGTTCGGAATACAAAGGCCGAGGAAGAAAAA ]
[+] EMBL CF329636 [ATCCGTCAACCTCATCCTCACTCCACAGATAACAGCCATGGTAACAAGCAAGAAGGTACAGAACAACGAAGCTGCAATGGCGGACGGCGCTGTTAAGGAATATCGCCATGGTCTGTGCATGGATGTCCCta ]
[-] EMBL CF331294 [ TCCATCAACCTCATCCTCACTCCACAGATAACAGCCATGGTAACAAGCAAGAAGGTACAGAACAACGAAGCTGCAATGGCGGACGGCGCTGTTAAGGAATATCGCCATGGTCTGTGCATGGATGTCCCGATGTACATTGAAGATTCGGAGTATTGTGGAGAGGAGCTTGGCACCAGACTAACTTGCAGGCATGGCCTCACGCCGAAACGGAGGACAGCTTGGGAAGGACCTGACACAGGAAGAAGGTTCTTAGGTTGTCCGCTGGAGGAAGAGGATCATTGCGATAAATTTTTTTGGGTCGACGAACCATGGCACCCAAGAGTTCAGAAGACACTTGAGCAGATGTGGCATGCAGTGGAACGTGCTACCAAGCTAACCGGTTCGAAACAATATGACTGGTGTTGTTTCGTTCGGAATACAAAGGCCGAGGAAGAAAAAATGAAGTTAGAGTTAGATACGGCTGACCATATCTCTGAACTAGAATTGGCGTATAAAAAAAAAAAAAAAAAAACAATGTCATGCCGTTAGTAGCGTATCGTTGAC]
[+] EMBL C28030 [ CAGATAACAGCCATGGTAACAAGCAAGAAGGTACAGAACAACGAAGCTGCAATGGCGGACGGCGCTGTTAAGGAATATCGCCATGGTCTGTGCATGGNTGTCCCGATGTACATTGAAGATTCGGAGTATTGTGGAGAGGAGCTTGGCACCAGACTAACTTGCAGGCATGGCCTCACGCCGAAACGGAGGACAGCTTGGGAAGGACCTGACACAGGAAGAAGGTTCTTAGGTTGTCCGCTGGAGGAAGAGGNTCANTGCGATAAATTTTTTTGGGTCGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12837#0 GGCCGATTTGGTTACGGGCCCCCCCTTCGAGNTCGCCCCACGCGTCATCAACCTCATCCT 60
consensus_12837#1 ------------------------------------------ATCCATCAACCTCATCCT 18
***************
consensus_12837#0 CACTCCACAGATAACAGCCATGGTAACAAGCAAGAAGGTACAGAACAACGAAGCTGCAAT 120
consensus_12837#1 CACTCCACAGATAACAGCCATGGTAACAAGCAAGAAGGTACAGAACAACGAAGCTGCAAT 78
************************************************************
consensus_12837#0 GGCGGACGGCGCTGTTAAGGAATATCGCCATGGTCTGTGCATGGATGTCCCGATGTACAT 180
consensus_12837#1 GGCGGACGGCGCTGTTAAGGAATATCGCCATGGTCTGTGCATGGATGTCCCGATGTACAT 138
************************************************************
consensus_12837#0 TGAAGATTCGGAGTATTGTGGAGAGGAGCTTGGCACCAGACTAACTTGCAGGCATGGCCT 240
consensus_12837#1 TGAAGATTCGGAGTATTGTGGAGAGGAGCTTGGCACCAGACTAACTTGCAGGCATGGCCT 198
************************************************************
consensus_12837#0 CACGCCGAAACGGAGGACAGCTTGGGAAGGACCTGACACAGGAAGAAGGTTCTTAGGTTG 300
consensus_12837#1 CACGCCGAAACGGAGGACAGCTTGGGAAGGACCTGACACAGGAAGAAGGTTCTTAGGTTG 258
************************************************************
consensus_12837#0 TCCGCTGGAGGAAGAGGATCAGTGCGATAAATTTTTTTGGGTCGACGAACCATGGCACCC 360
consensus_12837#1 TCCGCTGGAGGAAGAGGATCATTGCGATAAATTTTTTTGGGTCGACGAACCATGGCACCC 318
********************* **************************************
consensus_12837#0 AAGAGTTCAGAAGACACTTGAGCAGATGTGGCATGCAGTGGAACGTGCTACCAAGCTAAC 420
consensus_12837#1 AAGAGTTCAGAAGACACTTGAGCAGATGTGGCATGCAGTGGAACGTGCTACCAAGCTAAC 378
************************************************************
consensus_12837#0 CGGTTCGAAACAATATGACTGGTGTTGTTTCGTTCGGAATACAAAGGCCGAGGAAGAAAA 480
consensus_12837#1 CGGTTCGAAACAATATGACGGGTGTTGTTTCGTTCGGAATACAAAGGCCGAGGAAGAAAA 438
******************* ****************************************
consensus_12837#0 AATGAAGTTAGAGTTAGATACGGCTGACCATATCTCTGAACTAGAATTGGCGTATAAAAA 540
consensus_12837#1 AATGAAGTTAGAGTTAGATACGGCTGACCATATCTCTGAACTAGAATTGGCGTATAAAAA 498
************************************************************
consensus_12837#0 AAATTAATGAAAAAGAAAAAAGAGCTCGACGATACTCGTGCGTGGTTAATGGGATCGTTT 600
consensus_12837#1 AAA----AAAAAAAAAAACAATGTCATGCCGTTAGTAGCGTATCGTTGAC---------- 544
*** ***** *** ** * * ** ** * * * * *** *
consensus_12837#0 GTAGTAATTGTCATTATGTTAGTGAAAATTAGTGATCTCATGTACAACAAGTGATTACAT 660
consensus_12837#1 ------------------------------------------------------------
consensus_12837#0 TGGATGTAATATTTTCTTTAAACTTCCAACTTTTCCATCAAAATTATCCTACACACCCTA 720
consensus_12837#1 ------------------------------------------------------------
consensus_12837#0 ATGTTAATTTTTCGACGGAACTGCATTCATACTTAAACCGTGTAAATGCATAGTTTTGT 779
consensus_12837#1 -----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||