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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12838#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 838 fasta sequence
[TATCCTCTCTTCTCTCTGCCTCCTCTCTTCTCTTTGCTCCTCCCCTCTCTTAGCTCTCTCTCCCGTTCCCTCTCTCTCCACTGCACCACCCGACGGCGACCTAGCGGCGGGAGGGGAGGTGGTAGCGGCGCCCTCCCCTACGGTCCATCCAGCTGTCCAGCTGCGGCGGCGGCGGCCCAGCAGCGGGAGG-GGAGATGGTGGCGGTGCCCTACCCTATGCTCCATCCGGCCGTCCAGCAGCTGCGGCGGCACCCTCACCTCT-GCTAGATCTGGCGGGAAAGGGAGGTAGCGGGGCCCTCCCCTACGCTCCATCCGGCGTCCAACTGCTGCGGCGGCGGCCGGCCCGGCAGCGGGAACGGAGATGGTGGC-AGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGC-GGCAGCA-CCCTCATCTCCGCCAGATC-TGGAGGGAAGGGAGG-C-GGTGGGG--CCCTCCCCTCCG-CTAGATCTGGCGGGAAGGGAGGCGGCGGTGGCCTGGTGATGACGGCTTCCCACGGCAACGACAGCGGTGGTGGTGGGGGGGGCAGCGGCACCCTCCTCCTCTCCATCCGACGGCAACGGCAATAATGGAGAAGGCGCGTGGGGCGAGGAGACAGTTATGTGTTCTTGAGTAATGTTCTTGATGTGTTCTTGATGAATGTGATTTTGATGTGTTCTTGATGAATGTGATGTTGATGTATTCTTGATGAATGATGAACGATGTTCTTGAAGTGCTCGGGTCCGGCTTGATTCGAGCCGAGCCGGTTTTTCTTTTTGGGCTCGTTCATCCTTACAGATGCCGGTTCTAAATCGACAACGAAACCGGCACCT]
[+] EMBL CF335261 [TATCCTCTCTTCTCTCTGCCTCCTCTCTTCTCTTTGCTCCTCCCCTCTCTTAGCTCTCTCTCCCGTTCCCTCTCTCTCCACTGCACCACCCGACGGCGACCTAGCGGCGGGAGGGGAGGTGGTAGCGGCGCCCTCCCCTACGGTCCATCCAGCTGTCCAGCTGCGGCGGCGGCGGCCCAGCAGCGGGAGG GGAGATGGTGGCGGTGCCCTACCCTATGCTCCATCCGGCCGTCCAGCAGCTGGGGCGGCACCCTCACCTCT GCTAGATCTGGCGGGAAAGGGAGGTAGCGGGGCCCTCCCCTACGCTCCATCCGGCGTCCAACTGCTGCGGCGGCGGCCGGCCCGGCAGCGGGAACGGAGATGGTGGC AGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGC GGCAGCA CCCTCATCTCCGCCAGATC TGGAGGGAAGGGAGGCC GGTGGGGGCCCCTCCCCTCCG CTAGATCTGGCGGGAAGGGAGGCGGCGGTGGCCTGGTGATGACGGCTTCCCACGGCAACGA ]
[+] EMBL AK101544 [ TTCTCTCTGCCTCCTCTCTTCTCTTTGCTCCTCCCCTCTCTTAGCTCTCTCTCCCGTTCCCTCTCTCTCCACTGCACCACCCGACGGCGACCTAGCGGCGGGAGGGGAGGTGGTAGCGGCGCCCTCCCCTACGGTCCATCCAGCTGTCCAGCTGCGGCGGCGGCGGCCCAGCAGCGGGAGG GGAGATGGTGGCGGTGCCCTACCCTATGCTCCATCCGGCCGTCCAGCAGCTGCGGCGGCACCCTCACCTCT GCTAGATCTGGCGGGAAAGGGAGGTAGCGGGGCCCTCCCCTACGCTCCATCCGGCGTCCAACTGCTGCGGCGGCGGCCGGCCCGGCAGCGGGAACGGAGATGGTGGC AGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGC GGCAGCA CCCTCATCTCCGCCAGATC TGGAGGGAAGGGAGG C GGTGGGG CCCTCCCCTCCG CTAGATCTGGCGGGAAGGGAGGCGGCGGTGGCCTGGTGATGACGGCTTCCCACGGCAACGACAGCGGTGGTGGTGGGGGGGGCAGCGGCACCCTCCTCCTCTCCATCCGACGGCAACGGCAATAATGGAGAAGGCGCGTGGGGCGAGGAGACAGTTATGTGTTCTTGAGTAATGTTCTTGATGTGTTCTTGATGAATGTGATTTTGATGTGTTCTTGATGAATGTGATGTTGATGTATTCTTGATGAATGATGAACGATGTTCTTGAAGTGCTCGGGTCCGGCTTGATTCGAGCCGAGCCGG ]
[+] EMBL OSC27241 [ CTGCCTCCTCTCTTCTCTTTGCTCCTCCCCTCTCTTAGCTCTCTCTCCCGTTCCCTCTCTCTCCACTGCACCACCCGACGGCGACCTAGCGGCGGGAGGGGAGGTGGTAGCGGCGCCCTCCCCTACGGTCCATCCAGCTGTCCAGCTGCGGCGGCGGCGGCCCAGCAGCGGGAGG GGAGATGGTGGCGGTGCCCTACCCTATGCTCCATCCGGCCGTCCAGCAGCTGCGGCGNCACCNTCACCTCT GCTAGATCTNGCGGGAAAGGGAGGTAGCGGGGCCCTCCCCTACGGTCCATCCGG ]
[+] EMBL C26967 [ GCCTCCTCTCTTCTCTTTGCTCCTCCCCTCTNTNAGCTCTCTCTCCCGTTCCCTCTCTCTCCACTGCACCACCCGACGGCNACCTAGCGGCGGGAGGGGAGGTGGTAGCGGCGCCCTNCCCTACGGTCCATCCAGCTGTCCAGCTGCGGCGGCGGNGGNCCAGCAGCGGGAGG GGAGATGGTGGCGGTGCCCTACCCTATGCTCCATCCGGCCGTCCAGCAGCTGCGGCGGNACCNTCACCTC ]
[+] EMBL OS1082A [ TCTTTGCTCCNNCCCTCTCTTAGCTCTCTCTCCCGTTCCCTCTCTCTCCACTGCACCACCCGACGGCGACCTAGCGGCGGGAGGGGAGGTGGTAGCGGCNCCCTNCCCTACGGTCCATCCANCTGTNCAGCTGCGGCGGCGGCGGCCCAGCAGCGGGAGGTGGAGATGGTGGCGGTGCCCTACCCTATGCTCCATCCGGCCGTCCAGCAGCTGCGGCGGCACCCTNACCTNTANCTAGATCTGGCGGGAAAGG ]
[+] EMBL AK120581 [ CCTCTCTTAGCTCTCTCTCCCGTTCCCTCTCTCTCCACTGCACCACCCGACGGCGACCTAGCGGCGGGAGGGGAGGTGGTAGCGGCGCCCTCCCCTACGGTCCATCCAGCTGTCCAGCTGCGGCGGCGGCGGCCCAGCAGCGGGAGG GGAGATGGTGGCGGTGCCCTACCCTATGCTCCATCCGGCCGTCCAGCAGCTGCGGCGGCACCCTCACCTCT GCTAGATCTGGCGGGAAAGGGAGGTAGCGGGGCCCTCCCCTACGCTCCATCCGGCGTCCAACTGCTGCGGCGGCGGCCGGCCCGGCAGCGGGAACGGAGATGGTGGC AGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGC GGCAGCA CCCTCATCTCCGCCAGATC TGGAGGGAAGGGAGG C GGTGGGG CCCTCCCCTCCG CTAGATCTGGCGGGAAGGGAGGCGGCGGTGGCCTGGTGATGACGGCTTCCCACGGCAACGACAGCGGTGGTGGTGGGGGGGGCAGCGGCACCCTCCTCCTCTCCATCCGACGGCAACGGCAATAATGGAGAAGGCGCGTGGGGCGAGGAGACAGTTATGTGCTCTTGAGTAATGTTCTTGATGTGTTCTTGATGAATGTGATTTTGATGTGTTCTTGATGAATGTGATGTTGATGTATTCTTGATGAATGATGAACGATGTTCTTGAAGTGCTCGGGTCCGGCTTGATTCGAGCCGAGCCGGTTTTTCTTTTTGGGCTCGTTCATCCTTACAGATGCCGGTTCTAAATCGACAACGAAACCGGCACCT]
[+] EMBL AU075691 [ atnTAGCTCTCTCTCCCGTTCCCTCTCTCTCCACTGCACCACCCGACGGCGACCTAGCGGCGGGAGGGGAGGTGGTAGCGGCGCCCTCCCCTACGGTCCATCCAGCTGTCCAGCTGCGGCGGCGGCGGCCCAGCAGCGGGAGG GGAGATGGTGGCGGTGCCCTACCCTATGCTCCATCCGGCCGTCCAGCAGCTGCGGCGGCACCCTCACCTCT GCTAGATCTGGCGGGAAAAGGAGGTAGCGGGGCCCTCCCCTACGCTCCATCCGGCGTCCAACTGCTGCGGCGGCGGCCGGCCCGGCAGCGGGAACGGAGATGGTGGCAAGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGCGGGCAGCANACCTCATCTCCGCCAGATCTTGNAGGGAAGGGAGG C GGTGGGG NCCTCCCCTCCGNCTAGATNTGGCGGGAAAGGAGGCGGCGGTGGCCTGATGATGACGGCTTCCCAC ]
[+] EMBL AU181612 [ CTCTCCCGTTCCCTCTCTCTCCACTGCACCACCCGACGGCGACCTAGCGGCGGGAGGGGAGGTGGTAGCGGCGCCCTCCCCTACGGTCCATCCAGCTGTCCAGCTGCGGCGGCGGCGGCCCAGCAGCGGGAGG GGAGATGGTGGCGGTGCCCTACCCTATGCTCCATCCGGCCGTCCAGCAGCTGCGGCGGCACCCTCACCTCT GCTAGATCTGGCGGGAAAGGGAGGTAGCGGGGCCCTCCCCTACGCTCCATCCGGCGTCCAACTGCTGCGGCGGCGGCCGGCCCGGCAGCGGGAACGGAGATGGTGGC AGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGC GGCAGCA CCCTCATCTCCGCCAGATC TGGAGGGAAGGGAGG CGGGTGGGG CCCTCCCCTCCG CTAGATCTGGCGGG ]
[+] EMBL AU092428 [ TCCACCAGCTCCGGCGGCACCCTCACCTCT GCTAGATCTGNCGGGAAAGGGAGGTAGCGGGGCCCTCCTNTACGCTCCATCCGGCGTCCAACTGCTNCGGCGGCGGCCGGCCCGGCAGCGGGAACGGAGATGGTGGC AGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGC GNCAGCA CCCTCATCTCCGCCAGATC TGGAGGGAAGGGAGG C GGTGGGG CCCTCCCNTCCG CTAGATCTGGCGGGAAGGGAGGCGGCGGTGGCCTGGTGATGACGGCTTCCCACGGCAACGACAGCGGTGGTGGTGGGGGGGGCAGCGGCACCCTCCTCCTCTCCATCCGACGGCAACGGCAATAATGGAGAAGGCGCGTGGGGCGAGGAGACAGTTATGTGTTCTTGAGTAATGTTCTTGATGTGTTCTTGATGAATGTGATTTTGATGTGTTCTTGATGAAaaaa ]
consensusID : consensus_12838#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence
[GGCGTCCAACTGCTGCGGCGGCGGCCGGCCCGGCAGCGGGAACGGAGATGGTGGCAGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGCGGCAGCACCCTCATCTCCGCCAGATCTGGAGGGAAGGGAGGCGGTGGGGCCCTCCCCCTCCGCTAGATCTGGCGGGAAGGGAGGCGGCGGTGGCCTGGTGATGACGGCTTCCCACGGCAACGACAGCGGTGGTGGTGGGGGGGGCAGCGGCACCTTCCCTCCTCTCCATCCGACGGCAACGGCAATAATGGAGAAGGCGCGTGGGGCGAGGAGACAGTTATGTGTTCTTGAGTAATGTTCTTGATGTGTTCTTGATGAATGTGATTTTGATGTGTTCTTGATGAATGTGATGTTGATGTATTCTTGATGAATGATGAACGATGTTCTTGAAGTGCTCGGGTCCGGCTTGATTCGAGCCGAGCCGGTTTTTCTTTTAAAAAAAAAAAAAACCAAAAAAA]
[-] EMBL CF335262 [GGCGTCCAACTGCTGCGGCGGCGGCCGGCCCGGCAGCGGGAACGGAGATGGTGGCAGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGCGGCAGCACCCTCATCTCCGCCAGATCTGGAGGGAAGGGAGGCGGTGGGGCCCTCCCCCTCCGCTAGATCTGGCGGGAAGGGAGGCGGCGGTGGCCTGGTGATGACGGCTTCCCACGGCAACGACAGCGGTGGTGGTGGGGGGGGCAGCGGCACCTTCCCTCCTCTCCATCCGACGGCAACGGCAATAATGGAGAAGGCGCGTGGGGCGAGGAGACAGTTATGTGTTCTTGAGTAATGTTCTTGATGTGTTCTTGATGAATGTGATTTTGATGTGTTCTTGATGAATGTGATGTTGATGTATTCTTGATGAATGATGAACGATGTTCTTGAAGTGCTCGGGTCCGGCTTGATTCGAGCCGAGCCGGTTTTTCTTTTAAAAAAAAAAAAAACCAAAAAAA]
consensusID : consensus_12838#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence
[TGCGGCGGCGGCCGGCCCGNCAGCGGGAACGGAGATGGTGGCAGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGCGGCAGCACCCTCATCTCCGCCAGATCTGGAGGGAAGGGAGGCGGTGGGGCCCTCCCNTCCGCTAGATCTGGCGGGAAGGGAGGCGGCGGTGGCCTGGTGATGACGGCTTCCCACGGCAACGACAGCGGTGGTGGTGGGGGGGGCAGCGGCACCCTCCTCCTCTCCATCCGACGGCAACGGCAATAATGGAGAAGGCGCGTGGGGCGAGGAGACAGTTATGTGTTCTTGAGTAATGTTCTTGATGTGTTCTTGATGAATGTGATTTTGATGTGTTCTTGATGAATGTGATGTTGATGTATTCTTGATGAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU075692 [TGCGGCGGCGGCCGGCCCGNCAGCGGGAACGGAGATGGTGGCAGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGCGGCAGCACCCTCATCTCCGCCAGATCTGGAGGGAAGGGAGGCGGTGGGGCCCTCCCNTCCGCTAGATCTGGCGGGAAGGGAGGCGGCGGTGGCCTGGTGATGACGGCTTCCCACGGCAACGACAGCGGTGGTGGTGGGGGGGGCAGCGGCACCCTCCTCCTCTCCATCCGACGGCAACGGCAATAATGGAGAAGGCGCGTGGGGCGAGGAGACAGTTATGTGTTCTTGAGTAATGTTCTTGATGTGTTCTTGATGAATGTGATTTTGATGTGTTCTTGATGAATGTGATGTTGATGTATTCTTGATGAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12838#0 TATCCTCTCTTCTCTCTGCCTCCTCTCTTCTCTTTGCTCCTCCCCTCTCTTAGCTCTCTC 60
consensus_12838#1 ------------------------------------------------------------
consensus_12838#2 ------------------------------------------------------------
consensus_12838#0 TCCCGTTCCCTCTCTCTCCACTGCACCACCCGACGGCGACCTAGCGGCGGGAGGGGAGGT 120
consensus_12838#1 ------------------------------------------------------------
consensus_12838#2 ------------------------------------------------------------
consensus_12838#0 GGTAGCGGCGCCCTCCCCTACGGTCCATCCAGCTGTCCAGCTGCGGCGGCGGCGGCCCAG 180
consensus_12838#1 ------------------------------------------------------------
consensus_12838#2 ------------------------------------------------------------
consensus_12838#0 CAGCGGGAGGGGAGATGGTGGCGGTGCCCTACCCTATGCTCCATCCGGCCGTCCAGCAGC 240
consensus_12838#1 ------------------------------------------------------------
consensus_12838#2 ------------------------------------------------------------
consensus_12838#0 TGCGGCGGCACCCTCACCTCTGCTAGATCTGGCGGGAAAGGGAGGTAGCGGGGCCCTCCC 300
consensus_12838#1 ------------------------------------------------------------
consensus_12838#2 ------------------------------------------------------------
consensus_12838#0 CTACGCTCCATCCGGCGTCCAACTGCTGCGGCGGCGGCCGGCCCGGCAGCGGGAACGGAG 360
consensus_12838#1 -------------GGCGTCCAACTGCTGCGGCGGCGGCCGGCCCGGCAGCGGGAACGGAG 47
consensus_12838#2 --------------------------TGCGGCGGCGGCCGGCCCGNCAGCGGGAACGGAG 34
******************* **************
consensus_12838#0 ATGGTGGCAGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGCGGCAGCACCCT 420
consensus_12838#1 ATGGTGGCAGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGCGGCAGCACCCT 107
consensus_12838#2 ATGGTGGCAGCGTCCTCCCCTATGCTCCATCAGGCCGTCCAGCAGTTGCGGCAGCACCCT 94
************************************************************
consensus_12838#0 CATCTCCGCCAGATCTGGAGGGAAGGGAGGCGGTGGGGCCCTCCCC-TCCGCTAGATCTG 479
consensus_12838#1 CATCTCCGCCAGATCTGGAGGGAAGGGAGGCGGTGGGGCCCTCCCCCTCCGCTAGATCTG 167
consensus_12838#2 CATCTCCGCCAGATCTGGAGGGAAGGGAGGCGGTGGGGCCCTCCCN-TCCGCTAGATCTG 153
********************************************* *************
consensus_12838#0 GCGGGAAGGGAGGCGGCGGTGGCCTGGTGATGACGGCTTCCCACGGCAACGACAGCGGTG 539
consensus_12838#1 GCGGGAAGGGAGGCGGCGGTGGCCTGGTGATGACGGCTTCCCACGGCAACGACAGCGGTG 227
consensus_12838#2 GCGGGAAGGGAGGCGGCGGTGGCCTGGTGATGACGGCTTCCCACGGCAACGACAGCGGTG 213
************************************************************
consensus_12838#0 GTGGTGGGGGGGGCAGCGGCACCCTCC-TCCTCTCCATCCGACGGCAACGGCAATAATGG 598
consensus_12838#1 GTGGTGGGGGGGGCAGCGGCACCTTCCCTCCTCTCCATCCGACGGCAACGGCAATAATGG 287
consensus_12838#2 GTGGTGGGGGGGGCAGCGGCACCCTCC-TCCTCTCCATCCGACGGCAACGGCAATAATGG 272
*********************** *** ********************************
consensus_12838#0 AGAAGGCGCGTGGGGCGAGGAGACAGTTATGTGTTCTTGAGTAATGTTCTTGATGTGTTC 658
consensus_12838#1 AGAAGGCGCGTGGGGCGAGGAGACAGTTATGTGTTCTTGAGTAATGTTCTTGATGTGTTC 347
consensus_12838#2 AGAAGGCGCGTGGGGCGAGGAGACAGTTATGTGTTCTTGAGTAATGTTCTTGATGTGTTC 332
************************************************************
consensus_12838#0 TTGATGAATGTGATTTTGATGTGTTCTTGATGAATGTGATGTTGATGTATTCTTGATGAA 718
consensus_12838#1 TTGATGAATGTGATTTTGATGTGTTCTTGATGAATGTGATGTTGATGTATTCTTGATGAA 407
consensus_12838#2 TTGATGAATGTGATTTTGATGTGTTCTTGATGAATGTGATGTTGATGTATTCTTGATGAA 392
************************************************************
consensus_12838#0 TGATGAACGATGTTCTTGAAGTGCTCGGGTCCGGCTTGATTCGAGCCGAGCCGGTTTTTC 778
consensus_12838#1 TGATGAACGATGTTCTTGAAGTGCTCGGGTCCGGCTTGATTCGAGCCGAGCCGGTTTTTC 467
consensus_12838#2 AAAAAAAAAAAAAAAAAAAAAAAA------------------------------------ 416
* ** * **
consensus_12838#0 TTTTTGGGCTCGTTCATCCTTACAGATGCCGGTTCTAAATCGACAACGAAACCGGCACCT 838
consensus_12838#1 TTTTAAAAAAAAAAAAAACCAAAAAAA--------------------------------- 494
consensus_12838#2 ------------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||