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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12842#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 885 fasta sequence
[TCTCTCTCTCTCTCCTACTGTAGGCCACCACCACCGCGACCGCACGAGTCAACCTCACGGCAGCCAAGCGTTTGGTTGGGGGGATCGGAGCGGCGGCGGCGGCGATGCAGTCGCTGCAGGACAAGGCGTCGGAGTGGAGCGGCGTGGCGGCGGGGGATGCGTTCGCCATCGACGATGGGAACGTCTTCGAGGCGCTGGGCGGCACCACGCAGCCGTTCGTCGACCTCTCCACCAACTTCTACACCAGGGTTTATGAGGACGAGGAGGAGTGGTTCCGGCAGATCTTCGCGGGGTCGAAGAAGGAGGACGCGATCCGGAACCAGTACGAGTTCTTGGTGCAGCGCATGGGCGGCCCGCAGCTCTTCTCCCAGAGGAGAGGACATCCTGCCCTGATAGCACGGCATCGACCATTCCCTGTTACCCACCAGGCTGCAGAGCGATGGCTGCACCATATGCAGCAAGCTGTGGATACTAC-TGACAGCATAGACGC-TGCCACAAAAACCAAAATGATGTATTTTTTCAGGCACAC-TGCATAC-TTCCTT-GTT--GCCGGAAATGAGAT-GACAAGGCAAG-GCCATGGAACTTCCTGCAAGTGC-AAACA-T-GGAGAAAGCAAACCAGCAGAATAACGATCGA-TTCAT-GCCTCTGGCCAGTAAGGCATCT-GGATAATAAACGAT-TCGAGCCTTTA-GCAGCCTATCCTGGTGTTATAGAAAAAAAAAACCATGGACGATGGAATTCAGACCATCTATTCATTCACAAAAACAGTTGAGCTAACTGTTGTAGGCTTACAGCCACTCTCGAACACGGAGCAACCCAAAATTGATAGAACCTGCCTCTGGAGGAAGTTGCAAACTTGCAATAGTTATATCATACTCTCTATATTGAACAAAA]
[+] EMBL CF297413 [TCTCTCTCTCTCTCCTACTGTAGGCCACCACCACCGCGACCGCACGAGTCAACCTCACGGCAGCCAAGCGTTTGGTTGGGGGGATCGGAGCGGCGGCGGCGGCGATGCAGTCGCTGCAGGACAAGGCGTCGGAGTGGAGCGGCGTGGCGGCGGGGGATGCGTTCGCCATCGAC ]
[+] EMBL AK073898 [ CTCTCCTACTGTAGGCCACCACCACCGCGACCGCACGAGTCAACCTCACGGCAGCCAAGCGTTTGGTTGGGGGGATCGGAGCGGCGGCGGCGGCGATGCAGTCGCTGCAGGACAAGGCGTCGGAGTGGAGCGGCGTGGCGGCGGGGGATGCGTTCGCCATCGACGATGGGAACGTCTTCGAGGCGCTGGGCGGCACCACGCAGCCGTTCGTCGACCTCTCCACCAACTTCTACACCAGGGTTTATGAGGACGAGGAGGAGTGGTTCCGGCAGATCTTCGCGGGGTCGAAGAAGGAGGACGCGATCCGGAACCAGTACGAGTTCTTGGTGCAGCGCATGGGCGGCCCGCAGCTCTTCTCCCAGAGGAGAGGACATCCTGCCCTGATAGCACGGCATCGACCATTCCCTGTTACCCACCAGGCTGCAGAGCGATGGCTGCACCATATGCAGCAAGCTGTGGATACTAC TGACAGCATAGACGC TGCCACAAAAACCAAAATGATGTATTTTTTCAGGCACAC TGCATAC TTCCTT GTT GCCGGAAATGAGAT GACAAGGCAAG GCCATGGAACTTCCTGCAAGTGC AAACA T GGAGAAAGCAAACCAGCAGAATAACGATCGA TTCAT GCCTCTGGCCAGTAAGGCATCT GGATAATAAACGAT TCGAGCCTTTA GCAGCCTATCCTGGTGTTATAGAAAAAAAAAACCATGGACGATGGAATTCAGACCATCTATTCATTCACAAAAACAGTTGAGCTAACTGTTGTAGGCTTACAGCCACTCTCGAACACGGAGCAACCCAAAATTGATAGAACCTGCCTCTGGAGGAAGTTGCAAACTTGCAATAGTTATATCATACT ]
[+] EMBL CF291507 [ TCTCCTACTGTAGGCCACCACCACCGCGACCGCACGAGTCAACCTCACGGCAGCCAAGCGTTTGGTTGGGGGGATCGGAGCGGCGGCGGCGGCGATGCAGTCGCTGCAGGACAAGGCGTCGGAGTGGAGCGGCGTGGCGGCGGGGGATGCGTTCGCCATCGACGATGGGAACGTCTTCGAGGCGCTGGGCGGCACCACGCAGCCGTTCGTCGACCTCTCCACCAACTTCTACACCAGGGTTTATGAGGACGAGGAGGAGTGGTTCCGGCAGATCTTCGCGGGGTCGAAGAAGGAGGACGCGATCCGGAACCAGTACGAGTTCTTGGTGCAGCGCATGGGCGGCCCGCAGCTCTTCTCCCAGAGGAGAGGACATCCTGCCCTGATAGCACGGCATCGACCATTCCCTGTTACCCACCAGGCTGCAGAGCGATGGCTGCACCATATGCAGCAAGCTGTGGATACTAC TGACAGCATAGACGC TGCCACAAAAACCAAAATGATGTATTTTTTCAGGCACAC TGCATAC TTCCTT GTT GCCGGAAATGAGAT GACAAGGCAAG GCCATGGAACTTCCTGCA ]
[+] EMBL AU064587 [ GCAGATCTTCGCGGGGTCGAAGAAGGAGGACGCGATCCGGAACCAGTACGAGTTCTTGGTGCAGCGCATGGGCGGCCCGCAGCTCTTCTCCCAGAGGAGAGGACATCCTGCCCTGATAGCACGGCATCGACCATTCCCTGTTACCCACCAGGCTGCAGAGCGATGGCTGCACCATATGCAGCAAGCTGTGGATACTACTTGACAGCATAGACGCTTGCCACAAAAACCAAAATGATGTATTTTTTCAGGCACACTTGCATACTTTCCTT GTT GCCGGAAATGAGAT GACAAGGCAAG GCCATGGGACTTTCTGCAAGTGC AAACATT GGGGAAAGCAAACCAGCAGGATTACGTTCGG TTCAT GCCTTTGG CAGTAAGG ATCT TGATAAT AACG T TNGAGC ]
[+] EMBL AU064110 [ GCAGATCTTCGCGGGGTCGAAGAAGGAGGACGCGATCCGGAACCAGTACGAGTTCTTGGTGCAGCGCATGGGCGGCCCGCAGCTCTTCTCCCAGAGGAGAGGACATCCTGCCCTGATAGCACGGCATCGACCATTCCCTGTTACCCACCAGGCTGCAGAGCGATGGCTGCACCATATGCAGCAAGCTGTGGATACTAC TGACAGCATAGACGC TGCCACAAAAACCAAAATGATGTATTTTTTCAGGCACAC TGCATAC TTCCTT GTT GCCGGAAATGAGAT GACAAGGCAAG GCCATGGAACTTCCTGCAAGTGC AAACA TGGGGGAAAGCAAACCAGCAGAATAACGATCGA TTCAT GCCTCTGGCCAGTAAGGCATCTGGGNTAATAAACGNT TCGGGCCTTTAGGCAGCCT ]
[+] EMBL AU101250 [ CAGATCTTCGCGGGGTCGAAGAAGGAGGACGCGATCCGGAACCAGTACGAGTTCTTGGTGCAGCGCATGGGCGGCCCGCAGCTCTTCTCCCAGAGGAGAGGACATCCTGCCCTGATAGCACGGCATCGACCATTCCCTGTTACCCACCAGGCTGCAGAGCGATGGCTGCACCATATGCAGCAAGCTGTGGATACTAC TGACAGCATAGACGC TGCCACAAAAACCAAAATGATGTATTTTTTCAGGCACAC TGCATAC TTCCTT GTT GCCGGAAATGAGAT GACAAGGCAAG GCCATGGAACTTCCTGCAAGTGC AAACA T GGAGAAAGCAAACCAGCAGAATAACGATCGA TTCAT GCCTCTGGCCAGTAAGGCATCT GGATAATAAACGAT TCGAGCCTTTA GCAGCCTATCCTGGTGTTATAGAAAAA ]
[+] EMBL BI797619 [ GATCCGGAACCAGTACGAGTTCTTGGT CAGCGCATGGGCGGCCCGCAGCTCTTCTCCCAGAGGAGAGGACATCCTGCCCTGATAGCACGGCATCGACCATTCCCTGTTACCCACCAGGCTGCAGAGCGATGGCTGCACCATATGCAGCAAGCTGTGGATACTAC TGACAGCATAGACGC TGCCACAAAAACC AAATGATGTATTTTTTCAGGCACAC TGCATAC TTCCTT GTT GCCGGAAATGAGAT GACAAGGCAAG GCCATGGAACTTCCTGCAAGTGC AAACA T GGAGAAAGCAAACCAGCAGAATAACGATCGA TTCAT GCCTCTGGCCAGTAAGGCATCT GGATAATAAACGAT TCGAGCCTTTA GCAGCCTATCCTGGTGTTATAGAAAAAAAAAACCATGGACGATGGAATTCAGACCATCTATTCATTCACAAAAACAGTTGAGCTAACTGTTGTAGGCTTACAGCCACTCTCGAACACGGAGCAACCGAAAATTGATAGAACCTGCCTCTGGAGGAAGTTGCAAACTTGCAAaaaaa ]
[+] EMBL BI795703 [ tTTTTTTCAGGCACAC TGCATAC TTCCTTGGTTCCGCCGGAAATGAGATCGACAAGGCAAGCCCCATGGAACTTCCTGCAAGTGCAAAACA T GGAGAAAGCTAACCAGCAGAATAACGATCGATTTCATCGCCTCT GCCAGTAAGGCATCT GGATAATAAACGATGTCGAGCCTTTA CAGCCTATCCTGGTGTTATAGAAAAAAAAAACCATGGACGATGGAATTCAGACCATCTATTCATTCAC AAAACAGTTGAGCTAACTGTTGTAGGCTTACAGCCACTCTCGAACCCGGAGCAACCGAAAATTGATAGAAaaa ]
[-] EMBL CF297414 [ AGGCAAG GCCATGGAACTTCCTGCAAGTGC AAACA T GGAGAAAGCAAACCAGCAGAATAACGATCGA TTCAT GCCTCTGGCCAGTAAGGCATCT GGATAATAAACGAT TCGAGCCTTTA GCAGCCTATCCTGGTGTTATAG AAAAAAAAACCATGGACGATGGAATTCAGACCATCTATTCATTCACAAAAACAGTTGAGCTAACTGTTGTAGGCTTACAGCCACTCTCGAACACGGAGCAACCCAAAATTGATAGAACCTGCCTCTGGAGGAAGTTGCAAACTTGCAATAGTTATATCATACTCTCTATATTGAACAAAA]
consensusID : consensus_12842#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence
[AAGCTGTGGATACTACTGACAGCATAGACGCTGCCACAAAAACCAAAATGATGTATTTTTTCAGGCACACTGCATACTTCCTTGTTGCCGGAAATGAGATGACAAGGCAAGGCCATGGAACTTCCTGCAAGTGCAAACATGGAGAAAGCAAACCAGCAGAATAACGATCGATTCATGCCTTTGGCCAGTAAGGCATTTGGATAATAAACGATTCGAGCCTTTAGCAGCCTATCCTGGTGTTATAGAAAAAAAAAACCATGGACGATGGAATTCAGACCATTTATTCATTCACAAAAACAGTTGAGCTAACTGTTGTAGGCTTACAGCCACTTTCGAACACGGAGCAACCCAAAATTGATAGAACCTGCCTTTGGAGGAAGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATACCGTTTAGTAGCGTATCGTTGACAG]
[-] EMBL CF291506 [AAGCTGTGGATACTACTGACAGCATAGACGCTGCCACAAAAACCAAAATGATGTATTTTTTCAGGCACACTGCATACTTCCTTGTTGCCGGAAATGAGATGACAAGGCAAGGCCATGGAACTTCCTGCAAGTGCAAACATGGAGAAAGCAAACCAGCAGAATAACGATCGATTCATGCCTTTGGCCAGTAAGGCATTTGGATAATAAACGATTCGAGCCTTTAGCAGCCTATCCTGGTGTTATAGAAAAAAAAAACCATGGACGATGGAATTCAGACCATTTATTCATTCACAAAAACAGTTGAGCTAACTGTTGTAGGCTTACAGCCACTTTCGAACACGGAGCAACCCAAAATTGATAGAACCTGCCTTTGGAGGAAGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATACCGTTTAGTAGCGTATCGTTGACAG]
consensusID : consensus_12842#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 222 fasta sequence
[AAATGATGTATTTTTTCAGGTCTGTGCTACAGCTGAATTCTTGCAAGCTTACACATTTTGTCCTAGGATCTTAATACTGCTCTCTTCCTCCAGGCACACTGCATACTTCCTTGTTGCCGGAAATGAGATGACAAGGCAAGGCATGGAACTTCTGCAAGTGCAAACATGGAGAAAGCAAACCAGCAGAATAACGATCGATTCATGCCTCTGGCCAGTAAGGCA]
[+] EMBL AA751382 [AAATGATGTATTTTTTCAGGTCTGTGCTACAGCTGAATTCTTGCAAGCTTACACATTTTGTCCTAGGATCTTAATACTGCTCTCTTCCTCCAGGCACACTGCATACTTCCTTGTTGCCGGAAATGAGATGACAAGGCAAGGCATGGAACTTCTGCAAGTGCAAACATGGAGAAAGCAAACCAGCAGAATAACGATCGATTCATGCCTCTGGCCAGTAAGGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12842#0 TCTCTCTCTCTCTCCTACTGTAGGCCACCACCACCGCGACCGCACGAGTCAACCTCACGG 60
consensus_12842#1 ------------------------------------------------------------
consensus_12842#2 ------------------------------------------------------------
consensus_12842#0 CAGCCAAGCGTTTGGTTGGGGGGATCGGAGCGGCGGCGGCGGCGATGCAGTCGCTGCAGG 120
consensus_12842#1 ------------------------------------------------------------
consensus_12842#2 ------------------------------------------------------------
consensus_12842#0 ACAAGGCGTCGGAGTGGAGCGGCGTGGCGGCGGGGGATGCGTTCGCCATCGACGATGGGA 180
consensus_12842#1 ------------------------------------------------------------
consensus_12842#2 ------------------------------------------------------------
consensus_12842#0 ACGTCTTCGAGGCGCTGGGCGGCACCACGCAGCCGTTCGTCGACCTCTCCACCAACTTCT 240
consensus_12842#1 ------------------------------------------------------------
consensus_12842#2 ------------------------------------------------------------
consensus_12842#0 ACACCAGGGTTTATGAGGACGAGGAGGAGTGGTTCCGGCAGATCTTCGCGGGGTCGAAGA 300
consensus_12842#1 ------------------------------------------------------------
consensus_12842#2 ------------------------------------------------------------
consensus_12842#0 AGGAGGACGCGATCCGGAACCAGTACGAGTTCTTGGTGCAGCGCATGGGCGGCCCGCAGC 360
consensus_12842#1 ------------------------------------------------------------
consensus_12842#2 ------------------------------------------------------------
consensus_12842#0 TCTTCTCCCAGAGGAGAGGACATCCTGCCCTGATAGCACGGCATCGACCATTCCCTGTTA 420
consensus_12842#1 ------------------------------------------------------------
consensus_12842#2 ------------------------------------------------------------
consensus_12842#0 CCCACCAGGCTGCAGAGCGATGGCTGCACCATATGCAGCAAGCTGTGGATACTACTGACA 480
consensus_12842#1 ---------------------------------------AAGCTGTGGATACTACTGACA 21
consensus_12842#2 ------------AAATGATGTATTTTTTCAGGTCTGTGCTACAGCTGAATTCTTGCAAGC 48
* ** ** ** *
consensus_12842#0 GCATAGACGCTGCCACAAAAACCAAAA--TGATGTATTTTTTCAGGCACACTGCATACTT 538
consensus_12842#1 GCATAGACGCTGCCACAAAAACCAAAA--TGATGTATTTTTTCAGGCACACTGCATACTT 79
consensus_12842#2 TTACACATTTTGTCCTAGGATCTTAATACTGCTCTCTTCCTCCAGGCACACTGCATACTT 108
* * * ** * * * * ** ** * * ** * ******************
consensus_12842#0 CCTTGTTGCCGGAAATGAGATGACAAGGCAAGGCCATGGAACTTCCTGCAAGTGCAAACA 598
consensus_12842#1 CCTTGTTGCCGGAAATGAGATGACAAGGCAAGGCCATGGAACTTCCTGCAAGTGCAAACA 139
consensus_12842#2 CCTTGTTGCCGGAAATGAGATGACAAGGCAAGGC-ATGGAACTTC-TGCAAGTGCAAACA 166
********************************** ********** **************
consensus_12842#0 TGGAGAAAGCAAACCAGCAGAATAACGATCGATTCATGCCTCTGGCCAGTAAGGCATCTG 658
consensus_12842#1 TGGAGAAAGCAAACCAGCAGAATAACGATCGATTCATGCCTTTGGCCAGTAAGGCATTTG 199
consensus_12842#2 TGGAGAAAGCAAACCAGCAGAATAACGATCGATTCATGCCTCTGGCCAGTAAGGCA---- 222
***************************************** **************
consensus_12842#0 GATAATAAACGATTCGAGCCTTTAGCAGCCTATCCTGGTGTTATAGAAAAAAAAAACCAT 718
consensus_12842#1 GATAATAAACGATTCGAGCCTTTAGCAGCCTATCCTGGTGTTATAGAAAAAAAAAACCAT 259
consensus_12842#2 ------------------------------------------------------------
consensus_12842#0 GGACGATGGAATTCAGACCATCTATTCATTCACAAAAACAGTTGAGCTAACTGTTGTAGG 778
consensus_12842#1 GGACGATGGAATTCAGACCATTTATTCATTCACAAAAACAGTTGAGCTAACTGTTGTAGG 319
consensus_12842#2 ------------------------------------------------------------
consensus_12842#0 CTTACAGCCACTCTCGAACACGGAGCAACCCAAAATTGATAGAACCTGCCTCTGGAGGAA 838
consensus_12842#1 CTTACAGCCACTTTCGAACACGGAGCAACCCAAAATTGATAGAACCTGCCTTTGGAGGAA 379
consensus_12842#2 ------------------------------------------------------------
consensus_12842#0 GTTGCAAACTTGCAATAGTTATATCATA-----CTCTCT-ATATTGAACAAAA------- 885
consensus_12842#1 GTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATACCGTTTAGTAGCGTATC 439
consensus_12842#2 ------------------------------------------------------------
consensus_12842#0 --------
consensus_12842#1 GTTGACAG 447
consensus_12842#2 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||