cluster # 1285

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Oryza sativa
cluster # 1285 cluster # 1285 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1285#0 length = 1067 sequences # 1

consensus_1285#1 length = 448 sequences # 1

consensusID : consensus_1285#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1067
fasta sequence

                              [CGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGGGGGCGGTTCGCCGCCCCCGACGTCGCGAGAAGTCCATTGAACCTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGGTAGATGGCAAAAACGGGGACGATGAGCTCGAGCTCGATTGACCTGGAGCTCCTTGGCCCCGCCCTGCCTTGATCCGACGACGGAGTTGTAGACGACACTGGAGGGAGCCGGCTGAGATATAGAGCGCCATAGGGGATACCTCCGCGCTGGTCCTGGAGCTCGACGGCCTCATATAGACGAGTAGGGACGGCGGCGGAGGTCCACGCCGTCGCTACATCCGCGGGGATCAGCTCGGTCGGCTCAACGCCGCTCTGCTTGTCGCCAGCCTCCTTTACGTACCGCCTCTGCGCGCGATCAACCGCTCGCGTCGTCTCCTCGATAGCCTCCTTGCCGCTTCCGCCACCACGGCCGGTCGCACCGCCCCCTCGACCCTTCCGCCACCACCGCGACCTCACCTCATCGCCGACCCGCTCGTCGCCGGAGATCGGAGGCGGAGACAACGGAGCTGGTGGTGGCAGGACGGCCGGCGGTCAGCCCGATGGCGGGGCCTCCGGCTCCTCTTAACCCGCTGCCGTTCGACCACGCCACCTCCGCTGCCTCCGTGATGCATGCAGAGCTGGCCAGCTTGAAGAAGCCTTGAACCCAGTGACCAAAGAAGCCAGTTACCTCTTGCATTTGCAAGCGGCCTCATCCATCAGTTTTCTCAGCCCAAATCCATGCTGGAAAGCACAAGCCACAACAATAGTAGCGCAGTAGGTGCAGTACAGTGGAGTACGAGAGAATAAGAGTGAACTGGGATTGAAAGCAGAGGTGGGCTCTCAAAAAAAAAAAAGAGAAAGCAAAGCATAGGTGGAACGACGGGGCATATGCATGCATGGAGGATGGAGCACGTCACTGCTCCCAATTCCCAATGGCCACCTGCTAACTTACGCGTGCCATCAACTCCTAACAAGTTTTCAT]

[+] EMBL AK108525             [CGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGGGGGCGGTTCGCCGCCCCCGACGTCGCGAGAAGTCCATTGAACCTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGGTAGATGGCAAAAACGGGGACGATGAGCTCGAGCTCGATTGACCTGGAGCTCCTTGGCCCCGCCCTGCCTTGATCCGACGACGGAGTTGTAGACGACACTGGAGGGAGCCGGCTGAGATATAGAGCGCCATAGGGGATACCTCCGCGCTGGTCCTGGAGCTCGACGGCCTCATATAGACGAGTAGGGACGGCGGCGGAGGTCCACGCCGTCGCTACATCCGCGGGGATCAGCTCGGTCGGCTCAACGCCGCTCTGCTTGTCGCCAGCCTCCTTTACGTACCGCCTCTGCGCGCGATCAACCGCTCGCGTCGTCTCCTCGATAGCCTCCTTGCCGCTTCCGCCACCACGGCCGGTCGCACCGCCCCCTCGACCCTTCCGCCACCACCGCGACCTCACCTCATCGCCGACCCGCTCGTCGCCGGAGATCGGAGGCGGAGACAACGGAGCTGGTGGTGGCAGGACGGCCGGCGGTCAGCCCGATGGCGGGGCCTCCGGCTCCTCTTAACCCGCTGCCGTTCGACCACGCCACCTCCGCTGCCTCCGTGATGCATGCAGAGCTGGCCAGCTTGAAGAAGCCTTGAACCCAGTGACCAAAGAAGCCAGTTACCTCTTGCATTTGCAAGCGGCCTCATCCATCAGTTTTCTCAGCCCAAATCCATGCTGGAAAGCACAAGCCACAACAATAGTAGCGCAGTAGGTGCAGTACAGTGGAGTACGAGAGAATAAGAGTGAACTGGGATTGAAAGCAGAGGTGGGCTCTCAAAAAAAAAAAAGAGAAAGCAAAGCATAGGTGGAACGACGGGGCATATGCATGCATGGAGGATGGAGCACGTCACTGCTCCCAATTCCCAATGGCCACCTGCTAACTTACGCGTGCCATCAACTCCTAACAAGTTTTCAT]




>consensus_1285#0
CGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGGGGG
CGGTTCGCCGCCCCCGACGTCGCGAGAAGTCCATTGAACCTTATCATTTAGAGGAAGGAG
AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGGTAGATGGCAAAAA
CGGGGACGATGAGCTCGAGCTCGATTGACCTGGAGCTCCTTGGCCCCGCCCTGCCTTGAT
CCGACGACGGAGTTGTAGACGACACTGGAGGGAGCCGGCTGAGATATAGAGCGCCATAGG
GGATACCTCCGCGCTGGTCCTGGAGCTCGACGGCCTCATATAGACGAGTAGGGACGGCGG
CGGAGGTCCACGCCGTCGCTACATCCGCGGGGATCAGCTCGGTCGGCTCAACGCCGCTCT
GCTTGTCGCCAGCCTCCTTTACGTACCGCCTCTGCGCGCGATCAACCGCTCGCGTCGTCT
CCTCGATAGCCTCCTTGCCGCTTCCGCCACCACGGCCGGTCGCACCGCCCCCTCGACCCT
TCCGCCACCACCGCGACCTCACCTCATCGCCGACCCGCTCGTCGCCGGAGATCGGAGGCG
GAGACAACGGAGCTGGTGGTGGCAGGACGGCCGGCGGTCAGCCCGATGGCGGGGCCTCCG
GCTCCTCTTAACCCGCTGCCGTTCGACCACGCCACCTCCGCTGCCTCCGTGATGCATGCA
GAGCTGGCCAGCTTGAAGAAGCCTTGAACCCAGTGACCAAAGAAGCCAGTTACCTCTTGC
ATTTGCAAGCGGCCTCATCCATCAGTTTTCTCAGCCCAAATCCATGCTGGAAAGCACAAG
CCACAACAATAGTAGCGCAGTAGGTGCAGTACAGTGGAGTACGAGAGAATAAGAGTGAAC
TGGGATTGAAAGCAGAGGTGGGCTCTCAAAAAAAAAAAAGAGAAAGCAAAGCATAGGTGG
AACGACGGGGCATATGCATGCATGGAGGATGGAGCACGTCACTGCTCCCAATTCCCAATG
GCCACCTGCTAACTTACGCGTGCCATCAACTCCTAACAAGTTTTCAT

consensusID : consensus_1285#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 448
fasta sequence

                              [AGGGACTATGNCCGTTTAGNCCACGGAAGTTTGAGGCATAACAGNTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCCGCGCTACACTGATGTATCCAACGAGTTATATAGCCCTTGGCCGACAGGCCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATGCCTANTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGGGGCGGTTCGCCGCCCCCGACGTCGCGAGAAGTCCATTGAACCTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACTGCGGAAGGATCATTGTCGTGACAAAAAAAAATAAAAAAAAA]

[+] EMBL AU101301             [AGGGACTATGNCCGTTTAGNCCACGGAAGTTTGAGGCATAACAGNTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCCGCGCTACACTGATGTATCCAACGAGTTATATAGCCCTTGGCCGACAGGCCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATGCCTANTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGGGGCGGTTCGCCGCCCCCGACGTCGCGAGAAGTCCATTGAACCTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACTGCGGAAGGATCATTGTCGTGACAAAAAAAAATAAAAAAAAA]




>consensus_1285#1
AGGGACTATGNCCGTTTAGNCCACGGAAGTTTGAGGCATAACAGNTCTGTGATGCCCTTA
GATGTTCTGGGCCGCACGCCGCGCTACACTGATGTATCCAACGAGTTATATAGCCCTTGG
CCGACAGGCCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATTGCAATT
GTTGGTCTTCAACGAGGAATGCCTANTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTC
CCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTC
GGATCGCGGCGACGGGGCGGTTCGCCGCCCCCGACGTCGCGAGAAGTCCATTGAACCTTA
TCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACTGCGGAAGGATCAT
TGTCGTGACAAAAAAAAATAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1285#0      CGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGGGGG 60
consensus_1285#1      ------------------------------------------------------------
                                                                                  

consensus_1285#0      CGGTTCGCCGCCCCCGACGTCGCGAGAAGTCCATTGAACCTTATCATTTAGAGGAAGGAG 120
consensus_1285#1      ------------------------------------------------------------
                                                                                  

consensus_1285#0      AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGGTAGATGGCAAAAA 180
consensus_1285#1      ------------------------------------------------------AGGGAC 6
                                                                                * 

consensus_1285#0      CGGGGACGATGAGCTCGAGCTCGATTGACCTGGAGCTCCTTGGCCCCGCCCTGCCTTGAT 240
consensus_1285#1      TATGNCCGTTTAGNCCACGGAAGTTTGAGGCATAACAGNTCTGTGATGCCCTTAGATGTT 66
                         *  ** * **  *  *   * ****     * *   *  *    *****    ** *

consensus_1285#0      CCGACGACGGAGTTGTAGACGACACTGGAGGGAGCCGGCTGAGATATAGAGCGCCATAGG 300
consensus_1285#1      CTG--GGCCGCACGCCGCGCTACACTG-ATGTATCCAAC-GAGTTATATAGC-CCTTGGC 121
                      * *  * * *         * ****** * * * **  * *** **** *** ** * * 

consensus_1285#0      GGATACCTCCGCGCTGGTCCTGGAGCTCGACGGCCTCATATAGACGAGTAGGGACGGCGG 360
consensus_1285#1      CGACAGGCCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATTGCAATTG 181
                       ** *   **  * *  ** ***       *  * * **   **    *     *    *

consensus_1285#0      CGGAGGTCCAC---GCCGTCGCTAC-ATCCGCGGGG-ATCAGCTCG-GTCGGCT-CAACG 413
consensus_1285#1      TTGGTCTTCAACGAGGAATGCCTANTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCC 241
                        *   * **    *   *  ***  *  **** *  ********* ** * ** *  * 

consensus_1285#0      CCGCTCTGCTTGTCGCCAGCCTCCTTTACGTACCGCCTCTGCG-CGCGATCAACCGCTCG 472
consensus_1285#1      CTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCG 301
                      * ** **   *     * ***       * *****  *    *   ** * **  * ***

consensus_1285#0      CGTCGTCTCCTCGATAGCCTCCTTGCCGCTTCCGCCACCACGGCCGGTCGCACCGCCCCC 532
consensus_1285#1      GATCGCGGCGACGG--GGCGGTTCGCCGCCCCCGACGTCGCGAGAAGTC-CATTGAACCT 358
                        ***   *  **   * *   * *****  *** *  * **    *** **  *  ** 

consensus_1285#0      TCGACCCTTCCGCCACCACCGCGACCTCACCTCATCGCCGACCCGCTCGTCGCCGGAGAT 592
consensus_1285#1      T--ATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACTGCGGAAGGA 416
                      *  * * **  *        *    *  * *       *     *      ** * **  

consensus_1285#0      CGGAGGCGGAGACAACGGAGCTGGTGGTGGCAGGACGGCCGGCGGTCAGCCCGATGGCGG 652
consensus_1285#1      TCATTGTCGTGACAAAAAAA--AATAAAAAAAAA-------------------------- 448
                           *  * *****   *     *      *                            

consensus_1285#0      GGCCTCCGGCTCCTCTTAACCCGCTGCCGTTCGACCACGCCACCTCCGCTGCCTCCGTGA 712
consensus_1285#1      ------------------------------------------------------------
                                                                                  

consensus_1285#0      TGCATGCAGAGCTGGCCAGCTTGAAGAAGCCTTGAACCCAGTGACCAAAGAAGCCAGTTA 772
consensus_1285#1      ------------------------------------------------------------
                                                                                  

consensus_1285#0      CCTCTTGCATTTGCAAGCGGCCTCATCCATCAGTTTTCTCAGCCCAAATCCATGCTGGAA 832
consensus_1285#1      ------------------------------------------------------------
                                                                                  

consensus_1285#0      AGCACAAGCCACAACAATAGTAGCGCAGTAGGTGCAGTACAGTGGAGTACGAGAGAATAA 892
consensus_1285#1      ------------------------------------------------------------
                                                                                  

consensus_1285#0      GAGTGAACTGGGATTGAAAGCAGAGGTGGGCTCTCAAAAAAAAAAAAGAGAAAGCAAAGC 952
consensus_1285#1      ------------------------------------------------------------
                                                                                  

consensus_1285#0      ATAGGTGGAACGACGGGGCATATGCATGCATGGAGGATGGAGCACGTCACTGCTCCCAAT 1012
consensus_1285#1      ------------------------------------------------------------
                                                                                  

consensus_1285#0      TCCCAATGGCCACCTGCTAACTTACGCGTGCCATCAACTCCTAACAAGTTTTCAT 1067
consensus_1285#1      -------------------------------------------------------