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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12856#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1222 fasta sequence
[TCCCGACGTCCTGGAGGATGCTCTACGCGGTCACGTCCCTGCCGTCGCTCGTGTTCGTCGTCGCCGTGCTGCCGTTCGTCTCGGAGTCCCCGCGGTGGTACCTCGTGCGCCGCCGCGCCGACGACGCGATGCGCGTCGTGCGCGCCATCGCGTCCAGCAATGGCAGGAGCATTCCTGACGACGTGTCCCTCAAGCTCGACGACGAGGGAGACGACGACAACGGCGCCGGCGCAGGCAAGGTCGTCGACTCGTCAGCGTCGGCGTCGGGCTCCATCATCGACGTGTTCCGGTCGCGGACGACGAGGTTCAGGCTGGTGCTCTCGGTGGTGATCAACCTGCTCGCCTCGGTGGTGTACTACGGCCTCAGCCTCAACGTCGTCAACCTCAAGACCAACCTCTACGTCAGCGTCCTGGTGAACTCGCTCGCCGAGATGCCCGCCTACCTCCTCAC-CGCGCTGCTCCTCGACCGCTTCGGCCGGAAGCCGCTCGCCATCGGCACCATGCTTCTCAGCGGCATCTCCTGCTCCGCCGGCAGCCTCATCGCCGGCGCCGGCGCCATGAGGGTGGCGAGGCTGGCGTGCGGGGTGGTGGGGATCTTCGGCATGGCGGCGACGTACAACCTGCTGTTCATCTACACGGCGGAGCTGTTCCCGACGGCGGTGCGGAACGCGGCGCTGGGGTGCACGTCGCAGGCGTCGCAGATGGGCGCCATCCTGGCGCCGCTGGTGGTGGTGCTCGGGGAGCGCGTGCCGTTCGCGCTGTTAGGCGTGTCGGGCCTCGTCGGCGGGTTCCTCGTGTTCTGCCTGCCGGAGACGAAGAACAAGCCCATGTACGACACCATGGCCGGCCTGGAGGAAGGGGAGAAGACCCTCCTAAAATGATCATGGAAAACATGCATGTGATGCGAGTGATTCTGCTCGGAATCGGCGGGAATTGGTGGATTCTTCTACGTGTTGGTCGCTCGTGCAACCGGAGACAAATTGATTTTGGGCCGTTTTCCGCTGGAAACACCGTGTTTGGGCTGGGCTTTTGTGACTACGCTCATGAGTCGCCCTGGCTACTACCACAGCAAGTCTACTAAGCAGTACAGCTACAGCAAATTTCTTTCGGAATCCTGACTACACTTGCTGTGTTGCTCTGTTCCCGTCTTAATTTCTTCCTTTCTCATTCAGGAGCTAGTAATGAAAACGCTGAACCGATCAGCCTCCATCA--AAAAAGGAAA]
[+] EMBL AK121883 [TCCCGACGTCCTGGAGGATGCTCTACGTGGTCACGTCCCTGCCGTCGCTCGTGTTCGTCGTCGCCGTGCTGCCGTTCGTCTCGGAGTCCCCGCGGTGGTACCTCGTGCGCCGCCGCGCCGACGACGCGATGCGCGTCGTGCGCGCCATCGCGTCCAGCAATGGCAGGAGCATTCCTGACGACGTGTCCCTCAAGCTCGACGACGAGGGAGACGACGACAACGGCGCCGGCGCAGGCAAGGTCGTCGACTCGTCAGCGTCGGCGTCGGGCTCCATCATCGACGTGTTCCGGTCGCGGACGACGAGGTTCAGGCTGGTGCTCTCGGTGGTGATCAACCTGCTCGCCTCGGTGGTGTACTACGGCCTCAGCCTCAACGTCGTCAACCTCAAGACCAACCTCTACGTCAGCGTCCTGGTGAACTCGCTCGCCGAGATGCCCGCCTACCTCCTCAC CGCGCTGCTCCTCGACCGCTTCGGCCGGAAGCCGCTCGCCATCGGCACCATGCTTCTCAGCGGCATCTCCTGCTCCGCCGGCAGCCTCATCGCCGGCGCCGGCGCCATGAGGGTGGCGAGGCTGGCGTGCGGGGTGGTGGGGATCTTCGGCATGGCGGCGACGTACAACCTGCTGTTCATCTACACGGCGGAGCTGTTCCCGACGGCGGTGCGGAACGCGGCGCTGGGGTGCACGTCGCAGGCGTCGCAGATGGGCGCCATCCTGGCGCCGCTGGTGGTGGTGCTCGGGGAGCGCGTGCCGTTCGCGCTGTTCGGCGTGTCGGGCCTCGTCGGCGGGTTCCTCGTGTTCTGCCTGCCGGAGACGAAGAACAAGCCCATGTACGACACCATGGCCGGCCTGGAGGAAGGGGGGAAGACCCTCCTAAAATGATCATGGAAAACATGCATGTGATGCGAGTGATTCTGCTCGGAATCGGCGGGAATTGGTGGATTCTTCTACGTGTTGGTCGCTCGTGCAACCGGAGACAAATTGATTTTGGGCCGTTTTCCGCTGGAAACACCGTGTTTGGGCTGGGCTTTTGTGACTACGCTCATGAGTCGCCCTGGCTACTACCACAGCAAGTCTACTAAGCAGTACAGCTACAGCAAATTTCTTTCGGAATCCTGACTACACTTGCTGTGTTGCTCTGTTCCCGTCTTAATTTCTTCCTTTCTCATTCAGGAGCTAGTAATGAAAACGCTGAACCGATC ]
[+] EMBL CB619349 [TCCCGACGTCCTGGAGGATGCTCTACGCGGTCACGTCCCTGCCGTCGCTCGTGTTCGTCGTCGCCGTGCTGCCGTTCGTCTCGGAGTCCCCGCGGTGGTACCTCGTGCGCCGCCGCGCCGACGACGCGATGCGCGTCGTGCGCGCCATCGCGTCCAGCAATGGCAGGAGCATTCCTGACGACGTGTCCCTCAAGCTCGACGACGAGGGAGACGACGACAACGGCGCCGGCGCTGGCAAGGTCGTCGACTCGTCAGCGTCGGCGTCGGGCTCCATCATCGACGTGTTCCGGTCGCGGACGACGAGGTTCAGGCTGGTGCTCTCGGTGGTGATCAACCTGCTCGCCTCGGTGGTGTACTACGGCCTCAGCCTCAACGTCGTCAACCTCAAGAACCACCTCTACGTCAGCGTC ]
[+] EMBL CB619310 [TCCCGACGTCCTGGAGGATGCTCTACGCGGTCACGTCCCTGCCGTCGCTCGTGTTCGTCGTCGCCGTGCTGCCGTTCGTCTCGGAGTCCCCGCGGTGGTACCTCGTGCGCCGCCGCGCCGACGACGCGATGCGCGTCGTGCGCGCCATCGCGTCCAGCAATGGCAGGAGCATTCCTGACGACGTGTCCCTCAAGCTCGACGACGAGGGAGACGACGACAACGGCGCCGGCGCTGGCAAGGTCGTCGACTCGTCAGCGTCGGCGTCGGGCTCCATCATCGACGTGTTCCGGTCGCGGACGACGAGGTTCAGGCTGGTGCTCTCGGTGGTGATCAACCTGCTCGCCTCGGTGGTGTACTACGGCCTCAGCCTCAACGTCGTCAACCTCAAGACCAACCTCTACGTCAGC ]
[+] EMBL OSS1379A [ GCTCGACGACGAGGGAGACGACGACAACGGCGCCGGCGCAGGCAAGGTCGTCGACTCGTCAGCGTCGGCGTCGGGCTCCATCATCGACGTGTTCCGGTCGCGGACGACGAGGTTCAGGCTGGTGCTCTCGGTGGTGATCAACCTGCTCGCCTCGGTGGTGTACTACGGCCTCAGCCTCAACGTCGTCAACCTCAAGACCAACCTCTACGTCAGCGTCCTGGTGAACTCGCTCGCCGAGATGCCCGCCTACCTCCTCACNCGCGCTGCTCCTCGACCGCTTCGGCCGGAAGCCGCTCGCCATCGG ]
[-] EMBL CB619350 [ CCTGCTCCGCCGGCAGCCTCATCGCCGGCGCCGGCGCCATGAGGGTGGCGAGGCTGGCGTGCGGGGTGGTGGGGATCTTCGGCATGGCGGCGACGTACAACCTGCTGTTCATCTACACGGCGGAGCTGTTCCCGACGGCGGTGCGGAACGCGGCGCTGGGGTGCACGTCGCAGGCGTCGCAGATGGGCGCCATCCTGGCGCCGCTGGTGGTGGTGCTCGGGGAGCGCGTGCCGTTCGCGCTGTTAGGCGTGTCGGGCCTCGTCGGCGGGTTCCTCGTGTTCTGCCTGCCGGAGACGAAGAACAAGCCCATGTACGACACCATGGCCGGCCTGGAGGAAGGGGAGAAGACCCTCCTAAAATGATCATGGAAAACATGCATGTGATGCGAGTGATTCTGCTCGGAATCGGCGGGAATTGGTGGATTCTTCTACGTGTTGGTCGCTCGTGCAACCGGAGACAAATTGATTTTGGGCCGTTTTCCGCTGGAAACACCGTGTTTGGGCTGGGCTTTTGTGACTACGCTCATGAGTCGCCCTGGCTACTACCACAGCAAGTCTACTAAGCAGTACAGCTACAGCAAATTTCTTTCGGAATCCTGACTACACTTGCTGTGTTGCTCTGTTCCCGTCTTAATTTCTTCCTTTCTCATTCAGGAGCTAGTAATGAAAACGCTGAACCGATCA ]
[-] EMBL CB619311 [ CGCCATGAGGGTGGCGAGGCTGGCGTGCGGGGTGGTGGGGATCTTCGGCATGGCGGCGACGTACAACCTGCTGTTCATCTACACGGCGGAGCTGTTCCCGACGGCGGTGCGGAACGCGGCGCTGGGGTGCACGTCGCAGGCGTCGCAGATGGGCGCCATCCTGGCGCCGCTGGTGGTGGTGCTCGGGGAGCGCGTGCCGTTCGCGCTGTTAGGCGTGTCGGGCCTCGTCGGCGGGTTCCTCGTGTTCTGCCTGCCGGAGACGAAGAACAAGCCCATGTACGACACCATGGCCGGCCTGGAGGAAGGGGAGAAGACCCTCCTAAAATGATCATGGAAAACATGCATGTGATGCGAGTGATTCTGCTCGGAATCGGCGGGAATTGGTGGATTCTTCTACGTGTTGGTCGCTCGTGCAACCGGAGACAAATTGATTTTGGGCCGTTTTCCGCTGGAAACACCGTGTTTGGGCTGGGCTTTTGTGACTACGCTCATGAGTCGCCCTGGCTACTACCACAGCAAGTCTACTAAGCAGTACAGCTACAGCAAATTTCTTTCGGAATCCTGACTACACTTGCTGTGTTGCTCTGTTCCCGTCTTAATTTCTTCCTTTCTCATTCAGGAGATAGTAATGAAAACGCTGAACCGATCAGCCTCCATCA AAAAAGGAAA]
[-] EMBL CB619312 [ gtCATGGCGGCGACGTACAACCTGCTGTTCATCTACACGGCGGAGCTGTTCCCGACGGCGGTGCGGAACGCGGCGCTGGGGTGCACGTCGCAGGCGTCGCAGATGGGCGCCATCCTGGCGCCGCTGGTGGTGGTGCTCGGGGAGCGCGTGCCGTTCGCGCTGTTAGGCGTGTCGGGCCTCGTCGGCGGGTTCCTCGTGTTCTGCCTGCCGGAGACGAAGAACAAGCCCATGTACGACACCATGGCCGGCCTGGAGGAAGGGGAGAAGACCCTCCTAAAATGATCATGGAAAACATGCATGTGATGCGAGTGATTCTGCTCGGAATCGGCGGGAATCGGTGGATTCTTGTAGGTGTTGGTCGCTCGTGCAACCGGAGACAAATCGATTTTGGGCCGTTTTCCGCTGGAAACACCGTGTTTGGGTTGGGCTTTTGTGAATAGGCTCATGAGTCGCCCTGGCTACTCCCACAGCAAGTGTACTAAGCAGTACAGGTACAGCAAATTTCTTTCGGAATCCGGACTACACTTGCTGTGTTGCTCAGTTCCCGTCCTAATTTCTTCCTTTGTCATTCAGGAGCTAGTAATGAAAACGCTGATCCGATCA ]
[-] EMBL CB619385 [ CCGCTGGTGGTGGTGTTCGGGGAGCGCGTGCCGTTCGGGCTGTTAGGCGTGTCGGGCCTCGTCGGCGGGTTCCTCGTGTTCTGCCTGCCGGAGACGAAGAACAAGCCCATGTACGACACCATGGCCGGCCTGGAGGAAGGGGAGAAGACCCTCCTAAAATGATCATGGAAAACATGCATGTGATGCGAGTGATTCTGCTCGGAATCGGCGGGAATTGGTGGATTCTTCTACGTGTTGGTCGCTCGTGCAACCGGAGACAAATTGATTTTGGGCCGTTTTCCGCTGGAAACACCGTGTTTGGGCTGGGCTTTTGTGACTACGCTCATGAGTCGCCCTGGCTACTACCACAGCAAGTTTATTAAGCAGTACAGTTACAGCAAATTTCTTTCGGAATCCTGACTACACTTGCTGTGTTGCTCTGTTCCCGTCTTAATTTCTTCCTTTCTCATTCAGGAGCTAGGAATGAAAACGTTGAACC ]
[+] EMBL AU097032 [ AGCCCATGTACGACNCCATGGCCGGCCTGGAGGAAGGGGAGAAGACCCTCCTAAAATNATCATGGAAAACATGCATGTGATGCGAGTGATTCTGCTCGGAATCGNCGGGAATTGGTGGATTCTTCTACGTGTTGGTCGCTCGTGCAACCGGAGACAAATTGATTTTGGGCCGTTTTCCGCTGGAAACACCGTGTTTGGGCTGGGCTTTTGTGACTACGCTCATGAGTCGCCCTGGCTACTACCACAGCAAGTCTACTAAGCAGTACNGCTACAGCAAATTTCTTTCGGAATCCTGACTACACTTGCTGTGTTGCTCTGTTCCCGTCTTAATTTCTTCCTTTNTCATTCAGGAGCTAGTAATGAAAACGCTGAACCGATCAGCCTCCATCATGAAAAAaa ]
[+] EMBL CA999437 [ CATGTGATGCGAGTGATTCTGCTCGGAATCGGCGGGAATTGGTGGATTCTTCTACGTGTTGGTCGCTCGTGCAACCGGAGACAAATTGATTTTGGGCCGTTTTCCGCTGGAAACACCGTGTTTGGGCTGGGCTTTTGTGACTACGCTCATGAGTCGCCCTGGCTACTACCACAGCAAGTCTACTAAGCAGTACAGCTACAGCAAATTTCTTTCGGAATCCTGACTACACTTGCTGTGTTGCTCTGTTCCCGTCTTAATTTCTTCCTTTCTCATTCAGGAGCTAGTAATGAAAACG ]
consensusID : consensus_12856#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence
[GGTGCACGTCNCANGGCGTCGCAGAATNGGGCCCNACNTACCGCCTCTGGTGGTGGTGCNCGGGGAACGNGTTCCNTTCGCGCTGTTCNGCGTGTCAGGCCTCGTCNGCGGGTTCCTCGTGTTCTGCCTGCCGGAAACCAAANAACAAGCCCATGTTNCGACACCATGGCCGGCCTGGAAGAAAGGGAAAAAACCCTCCTAAAATGATCATGGAAAACATGCATGTGATGCAANTGATTCTGCTCCGAATCCGGCGGGAATTGGTGGATTCTTCTACNTNGTTGGTCNCTCNTCAACCGGANACAAATTGATTTTGGGGCCGTTTTCCGCTGGAAAACACCCTGTTTGGGCTGGGCTTTTGTGACTACNCTCATGAATCNCCCTGGCTACTACCACANCAAGTCTACTAANCANTACANCTACNNCAAATTTCTTTCNGAATCCTGACTACACTTGCTGTGTTGCTCTGTTCCCNTCTTAATTTCTTCCNTTCTCATTCANGAACTANTNATNAAAACCCTNAACCNATCACCCCCATCATNAAANCTG]
[+] EMBL BE228483 [GGTGCACGTCNCANGGCGTCGCAGAATNGGGCCCNACNTACCGCCTCTGGTGGTGGTGCNCGGGGAACGNGTTCCNTTCGCGCTGTTCNGCGTGTCAGGCCTCGTCNGCGGGTTCCTCGTGTTCTGCCTGCCGGAAACCAAANAACAAGCCCATGTTNCGACACCATGGCCGGCCTGGAAGAAAGGGAAAAAACCCTCCTAAAATGATCATGGAAAACATGCATGTGATGCAANTGATTCTGCTCCGAATCCGGCGGGAATTGGTGGATTCTTCTACNTNGTTGGTCNCTCNTCAACCGGANACAAATTGATTTTGGGGCCGTTTTCCGCTGGAAAACACCCTGTTTGGGCTGGGCTTTTGTGACTACNCTCATGAATCNCCCTGGCTACTACCACANCAAGTCTACTAANCANTACANCTACNNCAAATTTCTTTCNGAATCCTGACTACACTTGCTGTGTTGCTCTGTTCCCNTCTTAATTTCTTCCNTTCTCATTCANGAACTANTNATNAAAACCCTNAACCNATCACCCCCATCATNAAANCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12856#0 TCCCGACGTCCTGGAGGATGCTCTACGCGGTCACGTCCCTGCCGTCGCTCGTGTTCGTCG 60
consensus_12856#1 ------------------------------------------------------------
consensus_12856#0 TCGCCGTGCTGCCGTTCGTCTCGGAGTCCCCGCGGTGGTACCTCGTGCGCCGCCGCGCCG 120
consensus_12856#1 ------------------------------------------------------------
consensus_12856#0 ACGACGCGATGCGCGTCGTGCGCGCCATCGCGTCCAGCAATGGCAGGAGCATTCCTGACG 180
consensus_12856#1 ------------------------------------------------------------
consensus_12856#0 ACGTGTCCCTCAAGCTCGACGACGAGGGAGACGACGACAACGGCGCCGGCGCAGGCAAGG 240
consensus_12856#1 ------------------------------------------------------------
consensus_12856#0 TCGTCGACTCGTCAGCGTCGGCGTCGGGCTCCATCATCGACGTGTTCCGGTCGCGGACGA 300
consensus_12856#1 ------------------------------------------------------------
consensus_12856#0 CGAGGTTCAGGCTGGTGCTCTCGGTGGTGATCAACCTGCTCGCCTCGGTGGTGTACTACG 360
consensus_12856#1 ------------------------------------------------------------
consensus_12856#0 GCCTCAGCCTCAACGTCGTCAACCTCAAGACCAACCTCTACGTCAGCGTCCTGGTGAACT 420
consensus_12856#1 ------------------------------------------------------------
consensus_12856#0 CGCTCGCCGAGATGCCCGCCTACCTCCTCACCGCGCTGCTCCTCGACCGCTTCGGCCGGA 480
consensus_12856#1 ------------------------------------------------------------
consensus_12856#0 AGCCGCTCGCCATCGGCACCATGCTTCTCAGCGGCATCTCCTGCTCCGCCGGCAGCCTCA 540
consensus_12856#1 ------------------------------------------------------------
consensus_12856#0 TCGCCGGCGCCGGCGCCATGAGGGTGGCGAGGCTGGCGTGCGGGGTGGTGGGGATCTTCG 600
consensus_12856#1 ------------------------------------------------------------
consensus_12856#0 GCATGGCGGCGACGTACAACCTGCTGTTCATCTACACGGCGGAGCTGTTCCCGACGGCGG 660
consensus_12856#1 ------------------------------------------------------------
consensus_12856#0 TGCGGAACGCGGCGCTGGGGTGCACGTCGCAGG-CGTCGCAGA-TGGGCGCCATCCTGGC 718
consensus_12856#1 ------------------GGTGCACGTCNCANGGCGTCGCAGAATNGGGCCCNACNTACC 42
********** ** * ********* * ** ** * * *
consensus_12856#0 GCCGCTGGTGGTGGTGCTCGGGGAGCGCGTGCCGTTCGCGCTGTTAGGCGTGTCGGGCCT 778
consensus_12856#1 GCCTCTGGTGGTGGTGCNCGGGGAACGNGTTCCNTTCGCGCTGTTCNGCGTGTCAGGCCT 102
*** ************* ****** ** ** ** *********** ******* *****
consensus_12856#0 CGTCGGCGGGTTCCTCGTGTTCTGCCTGCCGGAGAC-GAAGAACAAGCCCATGT-ACGAC 836
consensus_12856#1 CGTCNGCGGGTTCCTCGTGTTCTGCCTGCCGGAAACCAAANAACAAGCCCATGTTNCGAC 162
**** **************************** ** ** ************* ****
consensus_12856#0 ACCATGGCCGGCCTGGAGGAAGGGGAGAAGACCCTCCTAAAATGATCATGGAAAACATGC 896
consensus_12856#1 ACCATGGCCGGCCTGGAAGAAAGGGAAAAAACCCTCCTAAAATGATCATGGAAAACATGC 222
***************** *** **** ** ******************************
consensus_12856#0 ATGTGATGCGAGTGATTCTGCTCGGAATC-GGCGGGAATTGGTGGATTCTTCTACGTG-T 954
consensus_12856#1 ATGTGATGCAANTGATTCTGCTCCGAATCCGGCGGGAATTGGTGGATTCTTCTACNTNGT 282
********* * *********** ***** ************************* * *
consensus_12856#0 TGGTCGCTCGTGCAACCGGAGACAAATTGATTTTGGG-CCGTTTTCCGCTGGAAA-CACC 1012
consensus_12856#1 TGGTCNCTCNT-CAACCGGANACAAATTGATTTTGGGGCCGTTTTCCGCTGGAAAACACC 341
***** *** * ******** **************** ***************** ****
consensus_12856#0 GTGTTTGGGCTGGGCTTTTGTGACTACGCTCATGAGTCGCCCTGGCTACTACCACAGCAA 1072
consensus_12856#1 CTGTTTGGGCTGGGCTTTTGTGACTACNCTCATGAATCNCCCTGGCTACTACCACANCAA 401
************************** ******* ** ***************** ***
consensus_12856#0 GTCTACTAAGCAGTACAGCTACAGCAAATTTCTTTCGGAATCCTGACTACACTTGCTGTG 1132
consensus_12856#1 GTCTACTAANCANTACANCTACNNCAAATTTCTTTCNGAATCCTGACTACACTTGCTGTG 461
********* ** **** **** ************ ***********************
consensus_12856#0 TTGCTCTGTTCCCGTCTTAATTTCTTCCTTTCTCATTCAGGAGCTAGTAATGAAAACGCT 1192
consensus_12856#1 TTGCTCTGTTCCCNTCTTAATTTCTTCCNTTCTCATTCANGAACTANTNATNAAAACCCT 521
************* ************** ********** ** *** * ** ***** **
consensus_12856#0 GAACCGATCAGCCTCCATCAAAAAAGGAAA 1222
consensus_12856#1 NAACCNATCA-CCCCCATCATNAAANCTG- 549
**** **** ** ****** ***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||