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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12887#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1040 fasta sequence
[GCAGTACTAGATCTTGCTCTAGTCTCTGACTTCCTCCCCATCTCTTTTCACCATATATATCTGAAGCAAATGGGAGACAAGAAACTTACGAAGCTCAAGGTTCGGGGTGCAAACGACGTAGAGGTCAAGAGCGTACTTCGTCAAGAGTTCAAAGAATCTGTCGACCAGGATAATTTCAAAGTAAAAGTAGATGGCAGCAGTTTGAAGGTGGACGTGCCAGGGACTGTCGACGTCGGGAAGCTCTATGAGCGCCTCAAGAAAATGTCATCCAGTGTCAAGATTGAATCAGTTGTGCCGGATGATCTAATGGCGAAAATGGATCGATACAAAAAGGACCTTCAGAACATGAAGAAACAGAAGGAAGCTGTCGAGTCAAAGCAAATCAAACAAGAGGAAGGATACAAGCTTCTCCAGCAAGAACAACGAAAATGGAAGAGAGACAAAGAAAATCTCAACTCAAAGCTCGAAAAAAAGACAAAGGAGACCAAAGATGCCAAGGAAGAACTCAAAATCACAAAGAGAGAGAAGGAATATCTCAACACAAAACTTGAGACAAAGAGGGAAGAGAACAAGCGCCTCGATGAGGAAAACAAGAAATTGCAGCGAAAAATCAAGGATCTACAGGAAATGCAGAAGGGATGGATAACTACAACTTCAACTAAGTTGGACAGTTTCGAATCTGTGGACCATAATCATCATGGTATGCATCACAGAGTGCATAAGGAGGTGCACAGGCATGAATTTCACATGCATCAAGAGGTTCGTCACCACGGTAATGTGATGGCATTGGAGAATGATGGTAGGAGGGCGCACTAACAACCCAGGCTGGAATATTACCACTGAGGAAATTAAATTTATCCTCCTACCAAAACTATATACATATGTGTGCTGACGTGGTTTGTGCTATGTTTGTGTGTGGTTTACTTGCCTTTCTTGGAGTTTTCTCTCTGTTTGTTGTGATGTTCTAGCATAATAAATAAAGCTGCATTATTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK103013 [GCAGTACTAGATCTTGCTCTAGTCTCTGACTTCCTCCCCATCTCTTTTCACCATATATATCTGAAGCAAATGGGAGACAAGAAACTTACGAAGCTCAAGGTTCGGGGTGCAAACGACGTAGAGGTCAAGAGCGTACTTCGTCAAGAGTTCAAAGAATCTGTCGACCAGGATAATTTCAAAGTAAAAGTAGATGGCAGCAGTTTGAAGGTGGACGTGCCAGGGACTGTCGACGTCGGGAAGCTCTATGAGCGCCTCAAGAAAATGTCATCCAGTGTCAAGATTGAATCAGTTGTGCCGGATGATCTAATGGCGAAAATGGATCGATACAAAAAGGACCTTCAGAACATGAAGAAACAGAAGGAAGCTGTCGAGTCAAAGCAAATCAAACAAGAGGAAGGATACAAGCTTCTCCAGCAAGAACAACGAAAATGGAAGAGAGACAAAGAAAATCTCAACTCAAAGCTCGAAAAAAAGACAAAGGAGACCAAAGATGCCAAGGAAGAACTCAAAATCACAAAGAGAGAGAAGGAATATCTCAACACAAAACTTGAGACAAAGAGGGAAGAGAACAAGCGCCTCGATGAGGAAAACAAGAAATTGCAGCGAAAAATCAAGGATCTACAGGAAATGCAGAAGGGATGGATAACTACAACTTCAACTAAGTTGGACAGTTTCGAATCTGTGGACCATAATCATCATGGTATGCATCACAGAGTGCATAAGGAGGTGCACAGGCATGAATTTCACATGCATCAAGAGGTTCGTCACCACGGTAATGTGATGGCATTGGAGAATGATGGTAGGAGGGCGCACTAACAACCCAGGCTGGAATATTACCACTGAGGAAATTAAATTTATCCTCCTACCAAAACTATATACATATGTGTGCTGACGTGGTTTGTGCTATGTTTGTGTGTGGTTTACTTGCCTTTCTTGGAGTTTTCTCTCTGTTTGTTGTGATGTTCTAGCATAATAAATAAAGCTGCATT ]
[+] EMBL AU160905 [ CAGCGAAAAATCAAGGATCTACAGGAAATGCAGAAGGGATGGATAACTACAACTTCAACTAAGTTGGACAGTTTCGAATCTGTGGACCATAATCATCATGGTATGCATCACAGAGTGCATAAGGAGGTGCACAGGCATGAATTTCACATGCATCAAGAGGTTCGTCACCACGGTAATGTGATGGCATTGGAGAATGATGGTAGGAGGGCGCACTNACAACCCAGGCTGGAATATTACCACTGAGGAAATTAAATTTATCCTCCTACCAAAACTATATACATATGTGTGCTGACGTGGTTTGTGCTATGTTTGTGTGTGGTTTACTTGCCTTTCTTGGAGTTTTCTCTCTGTTTGTTGTGATGTTCTAGCATAATAAATAAAGCTGCATTATTGAGAACAAAAAAAAAAAAAA ]
[+] EMBL AU088562 [ cnGAAGGGATGGATNACTACAACTTCAACTAAGTTGGACAGTTTCGAATCTGTGGNCCATAATCATCATGGTATGCATCACAGAGTGCATAAGGAGGTGCACAGGCATGAATTTCACATGCATCAAGNGGTTCGTCNCCNCGGTAATGTGATGGCATTGGAGAATGATGGTAGGAGGGCGCACTAACAACCCAGGCTGGAATATTACCACTGAGGAAATTAAATTTANCCTCCTACCAAAACTATATACATATGTGTGCTGACGTGGTTTGTGCTATGTTTGTGTGTGGTTTACTTGCCTTTCTTGGNGTTTTCTCNCTGTTTGTTGTGATGTTNTAGCATAATAAATAAAGCTGCATTATTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA754926 [ AGTTTTCTCTCTGTTTGTTGTGATGTTCTAGCATAATAAATAAAGCTGCATTATTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]
consensusID : consensus_12887#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 672 fasta sequence
[CAGCGTGANTTANGANTCTTGCTCTAGTCTCTGACTTCCTCCCCATCTCTTTTCACCATATATATCTGAAGCAAATGGGAGACAAGAAACTTACGAAGCTCAAGGTTCGGGGTGCAAACGACGTAGAGGTCAAGAGCGTACTTCGTCAAGAGTTCAAAGAATCTGTCGACCAGGATAATTTCAAAGTAAAAGTAGATGGCAGCAGTTTGAAGGTGGACGTGCCAGG-GACTGTCGACGTCGGGAAGCTCTATGAGCGC-CTCAAGAAAAT-GTCATCCAGTGTCAAGA-TTG-AATCAGTTGTGCCGGATGATCTAATGGCG-AAAAT-GGATCGATACAAAAAGGACCTTCAGAACATGAAGAAACAGAAGGAAGCTGTCGAGTCAAAGCAAATCAAACAAGAGGAAGGATACAAGCTTCTCCAGCAAG-AACAACG-AAATGGAAGAGNG-C-AAG--AAT-TC-ACTCAAGTCTCGAAAAAAAGACAAAGGAGACCAAAGATGCCAAGGAAGAACTCAAAATCACAAAGAGAGAGAAGGAATATCTCAACACAAAACTTGAGACAAAGAGGGAAGAGAACAAGCGCCTCGATGAGGAAAACAAGAAATTGCAGCGAAAAATCAAGGATCTACAGGAAATGCAGAAGGGGTTTTTGTCTGTTGCTAAACACTTGATTTGGACTGA]
[+] EMBL C27623 [CAGCGTGANTTANGANTCTTGCTCTAGTCTCTGACTTCCTCCCCATCTCTTTTCACCATATATATCTGAAGCAAATGGGAGACAAGAAACTTACGAAGCTCAAGGTTCGGGGTGCAAACGACGTAGAGGTCAAGAGCGTACTTCGTCAAGAGTTCAAAGAATCTGTCGACCAGGATAATTTCAAAGTAAAAGTAGATGGCAGCAGTTTGAAGGTGGACGTGCCAGG GACTGTCGACGTCGGGAAGCTCTATGA CGCACTCAAGAAAAT GTCATCCAGTGTCAAGA TTG AATCAGTTGTGCCGGATGATCTAATGGCG AAAAT GGATCGATACAAAAAGGACCTTCAGAACATGAAGANACAGAAGGAAGCTGTCGAGTCAAAGCAAATCAAACAAGAGGAAGGATACAAGCTTCTCCAGCAAGAAACAACG ATATGGAAGAn ]
[+] EMBL C28530 [ TCTAGTCTCTGACTTCCTCCCCATCTCTTTTCACCATATATATCTGAAGCAAATGGGAGACAAGAAACTTACGAAGCTCAAGGTTCGGGGTGCAAACGACGTAGAGGTCAAGAGCGTACTTCGTCAAGAGTTCAAAGAATCTGTCGACCAGGATAATTTCAAAGTAAAAGTAGATGGCAGCAGTTTGAAGGTGGACGTGCCAGG GACTGTCGACGTCGNGAAGCTCTATGAGCGC CTCAAGAAAAT GTCATCCAGTGTCAAGA TTG AATCAGTTGTGCCGGATGATCTAATGGCG AAAAT GGATCGATACAAAAAGG CCTTCAG ACATG AG AACAGNAGGAAG TGTCGAG CAAAG AAATC AACANGAGG AGG T CAAG TTCT CA NAAG AC ACG AATGG AG GNG C AAG AAT TC ACTCAAGTC ]
[+] EMBL OSC100761 [ GTCTCTGACTTCCTCCCCATCTCTTTTCACCATATATATCTGAAGCAAATGGGAGACAAGAAACTTACGAAGCTCAAGGTTCGGGGTGCAAACGACGTAGAGGTCAAGAGCGTACTTCGTCAAGAGTTCAAAGAATCTGTCGACCAGGNTAATTTCAAAGTAAAAGTAGATGGCAGCAGTTTGNAGGTGGACGTTCCAGGNGACTNTCGACGTCGGGAAGCTCTATGAGCGC CTCAAGNAAATNGTCATCCAGTGTCAAGATTTGNAATCAGTTNTGCCGGATGATCTAATGGCGAAAAATGGGATCGAT ]
[+] EMBL CF308388 [ CTATGAGCGC CTCAAGAAAAT GTCATCCAGTGTCAAGA TTG AATCAGTTGTGCCGGATGATCTAATGGCG AAAAT GGATCGATACAAAAAGGACCTTCAGAACATGAAGAAACAGAAGGAAGCTGTCGAGTCAAAGCAAATCAAACAAGAGGAAGGATACAAGCTTCTCCAGCAAG AACAACGAAAATGGAAGAGAGACAAAGAAAATCTCAACTCAAAGCTCGAAAAAAAGACAAAGGAGACCAAAGATGCCAAGGAAGAACTCAAAATCACAAAGAGAGAGAAGGAATATCTCAACACAAAACTTGAGACAAAGAGGGAAGAGAACAAGCGCCTCGATGAGGAAAACAAGAAATTGCAGCGAAAAATCAAGGATCTACAGGAAATGCAGAAGGGGTTTTTGTCTGTTGCTAAACACTTGATTTGGACTGA]
consensusID : consensus_12887#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 542 fasta sequence
[ACCGGATTTCAGGAATCTTGGTGGTGTTTCGCACGGAATTATTTAAAATTTTGAAAGAAACTTGAAAATCTTGGACCATATATTAGCTTGCTGGGATTCGGAAATTACCAAAATTTCAAACCCTGATATAATTTTCGGCAATCGTGCGGCTGATTTTTGGTCTGCGTTTTAACTGCAGGGATGGATAACTACAACTTCAACTAAGTTGGACAGTTTCGAATCTGTGGACCATAATCATCATGGTATGCATCACAGAGTGCATAAGGAGGTGCACAGGCATGAATTTCACATGCATCAAGAGGTTCGTCACCACGGTAATGTGATGGCATTGGAGAATGATGGTAGGAGGGCGCACTAACAACCCAGGCTGGAATATTACCACTGAGGAAATTAAATTTATCCTCCTACCAAAACTATATACATATGTGTGCTGACGTGGTTTGTGCTATGTTTGTGTGTGGTTTACTTGCCTTTCTTGGAGTTTTCTCTCTGTTTGTTGTGATGTTCTAGCATAATAAATAAAGCTGCATTATTGAGAAAAA]
[-] EMBL CF308389 [ACCGGATTTCAGGAATCTTGGTGGTGTTTCGCACGGAATTATTTAAAATTTTGAAAGAAACTTGAAAATCTTGGACCATATATTAGCTTGCTGGGATTCGGAAATTACCAAAATTTCAAACCCTGATATAATTTTCGGCAATCGTGCGGCTGATTTTTGGTCTGCGTTTTAACTGCAGGGATGGATAACTACAACTTCAACTAAGTTGGACAGTTTCGAATCTGTGGACCATAATCATCATGGTATGCATCACAGAGTGCATAAGGAGGTGCACAGGCATGAATTTCACATGCATCAAGAGGTTCGTCACCACGGTAATGTGATGGCATTGGAGAATGATGGTAGGAGGGCGCACTAACAACCCAGGCTGGAATATTACCACTGAGGAAATTAAATTTATCCTCCTACCAAAACTATATACATATGTGTGCTGACGTGGTTTGTGCTATGTTTGTGTGTGGTTTACTTGCCTTTCTTGGAGTTTTCTCTCTGTTTGTTGTGATGTTCTAGCATAATAAATAAAGCTGCATTATTGAGAAAAA]
[+] EMBL CF309095 [ GCACTAACAACCCAGGCTGGAATATTACCACTGAGGAAATTAAATTTATCCTCCTACCAAAACTATATACATATGTGTGCTGACGTGGTTTGTGCTATGTTTGTGTGTGGTTTACTTGCCTTTCTTGGAGTTTTCTCTCTGTTTGTTGTGATGTTCTAGCATAATAAATAAAGCTGCATTATTGAGAAAA ]
[-] EMBL CF309094 [ CACTAACAACCCAGGCTGGAATATTACCACTGAGGAAATTAAATTTATCCTCCTACCAAAACTATATACATATGTGTGCTGACGTGGTTTGTGCTATGTTTGTGTGTGGTTTACTTGCCTTTCTTGGAGTTTTCTCTCTGTTTGTTGTGATGTTCTAGCATAATAAATAAAGCTGCATTATTGAGAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12887#0 -----GCAGTACTAGATCTTGCTCTAGTCTCTGACTTCCTCCCCATCTCTTTTCACCATA 55
consensus_12887#1 CAGCGTGANTTANGANTCTTGCTCTAGTCTCTGACTTCCTCCCCATCTCTTTTCACCATA 60
consensus_12887#2 -ACCGGATTTCAGGAATCTTGGTGGTGTTTCGCACGGAATT---ATTTAAAATTTTGAAA 56
* ***** * ** ** ** * ** * * * *
consensus_12887#0 TATATCTGAAGCAAATGGGAGACAAGAAACTTACGAAGCTCAAGGTTCGGGGTGCAAACG 115
consensus_12887#1 TATATCTGAAGCAAATGGGAGACAAGAAACTTACGAAGCTCAAGGTTCGGGGTGCAAACG 120
consensus_12887#2 GAAACTTGAA---AATCTTGGACCATATA-TTAGCTTGCTGGGATTCGGAAATTACCAAA 112
* * **** *** *** * * * *** *** * * * *
consensus_12887#0 ACGTAGAGGTCAAGAGCGTACTTCGTCAAGAGTTCAAAGAATCTGTCGACCAGGATAATT 175
consensus_12887#1 ACGTAGAGGTCAAGAGCGTACTTCGTCAAGAGTTCAAAGAATCTGTCGACCAGGATAATT 180
consensus_12887#2 ATTTCAAACCCTGATATAATTTTCGGCAATCGTGCGGCTGATTT-TTGGTCTGCGT--TT 169
* * * * **** *** ** * ** * * * * * * **
consensus_12887#0 TCAAAGTAAAAGTAGATGGCAGCAGTTTGAA----GGTGGACGTGCCAGGGACTGTCGAC 231
consensus_12887#1 TCAAAGTAAAAGTAGATGGCAGCAGTTTGAA----GGTGGACGTGCCAGGGACTGTCGAC 236
consensus_12887#2 TAACTGCAGGGATGGATAACTACAACTTCAACTAAGTTGGACAGTTTCGAATCTGTGGAC 229
* * * * * *** * ** ** ** * ***** * **** ***
consensus_12887#0 GTCGGGAAGCTCTATGAGCGCCTCAAGAAAATGTCATCCAGTGT-CAAGATTGAATCAGT 290
consensus_12887#1 GTCGGGAAGCTCTATGAGCGCCTCAAGAAAATGTCATCCAGTGT-CAAGATTGAATCAGT 295
consensus_12887#2 CATAATCATCATGGTATGCATCACA-GAGTGCATAAGGAGGTGCACAGGCATGAATTTCA 288
* * * ** * ** ** * * *** ** * *****
consensus_12887#0 TGTGCCGGATGATCTAATGGCGAAAATGGATCGATACAAAAAGGACCTTCAGAACATGAA 350
consensus_12887#1 TGTGCCGGATGATCTAATGGCGAAAATGGATCGATACAAAAAGGACCTTCAGAACATGAA 355
consensus_12887#2 CATGCATCAAGAGGT--TCGTCACCACGG--TAATGTGATGG----CATTGGAGAATGAT 340
*** * ** * * * * * ** ** * * * ** ****
consensus_12887#0 GAAACAGAAGGAAGCTGTCGAGTCAAAGCAAATCAAACAAGAGGAAGGATACAAGCTTCT 410
consensus_12887#1 GAAACAGAAGGAAGCTGTCGAGTCAAAGCAAATCAAACAAGAGGAAGGATACAAGCTTCT 415
consensus_12887#2 GGTAGGAGGGCGCACTAACAACCCAGGCTGGAATATTACCACTGAGGAAATTAAATTTAT 400
* * * ** * * ** * * ** * * ** ** *
consensus_12887#0 CCAGCAAGAACAACGAAAATGGAAGAGAGACAAAGAAAATCTCAACTCAAAGCTCGAAAA 470
consensus_12887#1 CCAGCAAGAACAACGAAA-TGGAAGAGNG-CAAGAA-----TTCACTCAAGTCTCGAAAA 468
consensus_12887#2 CCTCCTACCAAAACTATA-TACATATGTG-TGCTGACGTGGTTTGTGCTATGTTTGTGTG 458
** * * * *** * * * * * * * * * * * *
consensus_12887#0 AAAGACAAAGGAGACCAAAGATGCCAAGGAAGAACTCAAAATCACAAAGAGAGAGAAGGA 530
consensus_12887#1 AAAGACAAAGGAGACCAAAGATGCCAAGGAAGAACTCAAAATCACAAAGAGAGAGAAGGA 528
consensus_12887#2 TGGTTTACTTGCCTTTCTTGGAGTTTTCTCTCTGTTTGTTGTGATGTTCTAGCATAATAA 518
* * * * * * * * ** *
consensus_12887#0 ATATCTCAACACAAAACTTGAGACAAAGAGGGAAGAGAACAAGCGCCTCGATGAGGAAAA 590
consensus_12887#1 ATATCTCAACACAAAACTTGAGACAAAGAGGGAAGAGAACAAGCGCCTCGATGAGGAAAA 588
consensus_12887#2 ATAAAGCTGCATTA---TTGAGAAAAA--------------------------------- 542
*** * ** * ****** ***
consensus_12887#0 CAAGAAATTGCAGCGAAAAATCAAGGATCTACAGGAAATGCAGAAGGGATGGATAACTAC 650
consensus_12887#1 CAAGAAATTGCAGCGAAAAATCAAGGATCTACAGGAAATGCAGAAGGGGTTTTTGTCTGT 648
consensus_12887#2 ------------------------------------------------------------
consensus_12887#0 AACTT--CAACTAAGTTGGACAGTTTCGAATCTGTGGACCATAATCATCATGGTATGCAT 708
consensus_12887#1 TGCTAAACACTTGATTTGGACTGA------------------------------------ 672
consensus_12887#2 ------------------------------------------------------------
consensus_12887#0 CACAGAGTGCATAAGGAGGTGCACAGGCATGAATTTCACATGCATCAAGAGGTTCGTCAC 768
consensus_12887#1 ------------------------------------------------------------
consensus_12887#2 ------------------------------------------------------------
consensus_12887#0 CACGGTAATGTGATGGCATTGGAGAATGATGGTAGGAGGGCGCACTAACAACCCAGGCTG 828
consensus_12887#1 ------------------------------------------------------------
consensus_12887#2 ------------------------------------------------------------
consensus_12887#0 GAATATTACCACTGAGGAAATTAAATTTATCCTCCTACCAAAACTATATACATATGTGTG 888
consensus_12887#1 ------------------------------------------------------------
consensus_12887#2 ------------------------------------------------------------
consensus_12887#0 CTGACGTGGTTTGTGCTATGTTTGTGTGTGGTTTACTTGCCTTTCTTGGAGTTTTCTCTC 948
consensus_12887#1 ------------------------------------------------------------
consensus_12887#2 ------------------------------------------------------------
consensus_12887#0 TGTTTGTTGTGATGTTCTAGCATAATAAATAAAGCTGCATTATTGAGAAAAAAAAAAAAA 1008
consensus_12887#1 ------------------------------------------------------------
consensus_12887#2 ------------------------------------------------------------
consensus_12887#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1040
consensus_12887#1 --------------------------------
consensus_12887#2 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||