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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12889#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1260 fasta sequence
[ACAGCTATCTTTTCCCATTTCTCCCCGCCCCCCCAACCCCACCTCCAATCCCTCTCGTCGTCGAGGCGAGCGCGGGCGCGGGCGCGGGCGGCGAGATGGAAGGGATGGGGCAGCAGAAGAGGCGGCCGCTGGTGGTGATGGCGTCGGCGCAGGCGGCGGCGCGGGGTGGGGCCAACCCGCTCGCGGAGCTGACCGACCGCGTCAAGACCCTGGAGGCCGGCCTGCGGGCGTGGCTGGCGAAGCAGCCCACGCACGTCGAGGCCGCCGTCGCCACCGCCGTCGGGGCCGTGCAGGGCGGCGCCCTCGGCGGGCTGATGGGCACGCTCGCGCCGGACGGCGGGTCGCCGTTCCCCGTGCCGCAGCCGCCGCCCGGGGCCGACCCCAACGCCCTCGCCTCCTTCAAGCAGGCGCAGGCTTTGGCAGGTGGACCACTGGTGCAAGCCCGAAACTTTGCCGTCATGACTGGTGCTAATGCAGGAATATCTTGTGTTATGAGAAGGATAAGAGGAGTGGAGGATGTCCAGGGCAGCATGGCAGCAGCGTTTGGTTCTGGCGCTTTATTCTCCATTGTGAGTGGAATGGGGTCTCCAAATCCAGTTGCTAATGCAATTACAACTGGTGTAGCTTTTGCAGTATTTCAA-GGTGGTTTTTTCATGATTGGTCAGAAATTTTCGCAGCCACCGAGTGAAGATATATACTATTCCCGTGGGAGAAATATGTTGAAACAATTAGGGCTTCAGAACTATGAGAAGAATTTCAAGAAGGGTCTTCTTACTGATCAAACATTGCCCCTACTCAATGACAGTGCACTTAGAGATGTGAAGATCCCCCCTGGTCCCAGACTTCTCATCCTTGATCACATTCAAAGAGACCCTGAGTTAACGAAATCAACTT-AAATCGATT-GCCACAGCCTGTTGGCACCAGCTTTTCCTCAAGTTGCATAAAATCGTGTTCTT-GGAAGTACAATCTAGCTATTTCAAGGATGAGCTCTTTAGGCAGAAGTGTGATTGGAAAAGATAGCTCATAGACGTTTTTGTAGT-CA-TCAAACTATGATAAATTTAGATGGATGATATGCACTGAAGTTACCCTCGAATTA-CTAGCTTCCTGTTTTTAGTCTTGAACGGTTGAATCTTATGCTGAGTGGTTGATATTTCCAATTGGGCAAGTCAAGATAGAACACTTTCCATAAGTTGTGTATGTTATAAGTTAATAATCTATTGGGCCTTTTCCAAGTTAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB648054 [ACAGCTATCTTTTCCCATTTCTCCCCGCCCCCCCAACCCCACCTCCAATCCCTCTCGTCGTCGAGGCGAGCGCGGGCGCGGGCGCGGGCGGCGAGATGGAAGGGATGGGGCAGCAGAAGAGGCGGCCGCTGGTGGTGATGGCGTCGGCGCAGGCGGCGGCGCGGGGTGGGGCCAACCCGCTCGCGGAGCTGACCGACCGCGTCAAGACCCTGGAGGCCGGCCTGCGGGCGTGGCTGGCGAAGCAGCCCACGCACGTCGAGGCCGCCGTCGCCACCGCCGTCGGGGCCGTGCAGGGCGGCGCCCTCGGCGGGCTGATGGGCACGCTCGCGCCGGACGGCGGGTCGCCGTTCCCCGTGCCGCAGCCGCCGCCCGGGGCCGACCCCAACGCCCTCGCCTCCTTCAAGCAGGCGCAGGCTTTGGCAGGTGGACCACTGGTGCAAGCCCGAAACTTTGCCGTCATGACTGGTGCTAATGCAGGAATATCTTGTGTTATGAGAAGGATAAGAGGAGTGGAGGATGTCCAGGGCAGCATGGCAGCAGCGTTTGGTTCTGGCGCTTTATTCTCCATTGTGAGTGGAATGGGGTCTCCAAATCCAGTTGCTAATGCAATTACAACTGGTGTAGCTTTTGCAGTATTTCAA GGTGGTTTTTTCATGATTGGTCAGAAATTTTCGCAGCCACCGAGTGAAGATATATACTATTCCCGTGGGAGAAATATGTTGAAACAATTAGGGCTTCAGAACTATGAGAAGAAATTCAAGAAGGGTCTTCTTACTGATCAAA ]
[-] EMBL CB648055 [ GTTTGGTTCTGGCGCTTTATTCTCCATTGTGAGTGGAATGGGGTCTCCAAATCCAGTTGCTAATGCAATTACAACTGGGGTAGCTTTTGCAGTATTTCAA GGTGGTTTTTTCATGATTGGTCAGAAATTTTCGCAGCCCCGGAGTGAAGATATATACTATTCCCGTGGGGGAAATATGTTGAACCAATTAGGGCTTCAGAACTATGAGAAGAATTTCAAGAAGGGTCTTCTTACTGATCAAACATTGCCCCTACTCAATGACAGTGCACTTAGAGATGTGAAGATCCCCCCTGGTCCCAGACTTCTCATCCTTGATCACATTCAAAGAGACCCTGAGTTAAGGAAATCAACTT AAATCGATT GCCCCAGCCTGTTGGCACCAGCTTTTCCTCAAGTGGCATAAAATCGTGTTCTT GGAAGTCCAATCTAGCTATTTCAAGGATGAGCTCTTTAGGCAGAAGTGTGATTGGAAAAGATAGCTCATAGACGTTTTGGTAGT CA TCAAACTATGATAAATTTAGATGGATGATATGCACTGAAGTTCCCCTCGAATTA CTAGCTTCCTGTTTTTAGTCTTGAACGGTTGAATAAAGGGCTGAGT ]
[-] EMBL CA763614 [ gaCAAGGGGGGTTTTTTCATGATTGGTCAGAAATNTTCGCAGCCACCGAGTGAAGATATATACTATTCCCGTGGGAGAAATATGTTGAAACAATTAGGGCTTCAGAACTATGAGAAGAATTTCAAGAAGGGTCTTCTTACTGATCAAACATTGCCCCTACTCAATGACAGTGCACTTAGAGATGTGAAGATCCCCCCTGGTCCCAGACTTCTCATCCTTGATCACATTCAAAGAGACCCTGAGTTAACGAAATCAACTT AAATCGATT GCCACAGCCTGTTGGCACCAGCTTTTCCTCAAGTTGCATAAAATCGTGTTCTT GGAAGTACAATCTAGCTATTTCAAGGATGAGCTGTTTAGGCAGAAGTGTGATTGGAAAAGATAGCTCATAGACGTTTTTGTAGT CA TCAAACTATGATAAATTTAGATGGATGATATGCACTGAAGTTACCCTCGAATTA CTAGCTTCCTGTTTTTAGTTTTGAACGGTTGAATCTTATGCTGAGTGGTTGATATTTCCAATTGGGCAAGTCAAGATAGAACACTTTCCATAAGTTGTGTATGTTATAAGTTAATAATCTACTGGGCCTTTTCCAAGTTAAAAAAAAAAAA ]
[+] EMBL AU068274 [ GTTAACGAAATCAACTT AAATCGATT GCCACAGCCTGTTGGCACCAGCTTTTCCTCAAGTTGCATAAAATCGTGTTCTT GGAAGTACAATCTAGCTATTTCAAGGATGAGCTCTTTAGGCAGAAGTGTGATTGGAAAAGATAGCTCATAGACGTTTTTGTAGT CA TCAAACTATGATAAATTTAGATGGATGATATGCACTGAAGTTACCCTCGAATTA CTAGCTTCCTGTTTTTAGTCTTGAACGGTTGAATCTTATGCTGAGTGGTTGATATTTCCAATTGGGCAAGTCAAGATAGAACACTTTCCATAAGTTGTGTATGTTATAAGTTAATAATCTATTGGGCCTTTTCCAAGTTAAAA ]
[+] EMBL AU166123 [ AANTCCACTTAAAACCGATTCCCCACACCCTTTTGGCNCCAGCTTTCCCNCAAGTGGCAAAAAATCGGGTTCTTGGGAAGTACAATCTAGCTNTTTCAAGGATGAGCTCTTTAGGCAGAAGTGTGATTGGAAAAGATGGCTAATAGACGTTTTTGTAGT CA TCAAACTATGATAAATTTAGATGGATGATATGCACTGAAGTTACCCTCGAATNA CTAGCTTCCTGTTTTTAGTCTTGAACGGTTGAATCTTATGCTGAGTGGTTGATATTTCCAATTGGGCAAGTCAAGATAGAACACTTTCCATAAGTTGTGTATGTTATAAGTTAATAATCTATTGGGCCTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU091804 [ TTTCCCTCAAGTTGCATAAAATCGTGTTCTT GGAAGTACAATCTAGCTATTTCAAGGATGAGCTCTTTAGGCAGAAGTGTGATTGGAAAAGATAGCTCATAGACGTTTTTGTAGT CA TCAAACTATGATAAATTTAGATGGATGATATGCACTGAAGTTACCCTCGAATTA CTAGCTTCCTGTTTTTAGTCTTGAACGGTTGAANCTTATGCTGAGTGGTTGATATTTCCAATTGGGCAAGTCAAGATAGAACACTTTCCATAAGTTGTGTATGTTATAAGTTAATAATCTATTGGGCCTTTTCCAAGTTAAAA ]
[+] EMBL CF331016 [ TCCTCAAGTTGCATAAAATCGTGTTCTT GGAAGTACAATCTAGCTATTTCAAGGATGAGCTCTTTAGGCAGAAGTGTGATTGGAAAAGATAGCTCATAGACGTTTTTGTAGT CA TCAAACTATGATAAATTTAGATGGATGATATGCACTGAAGTTACCCTCGAATTA CTAGCTTCCTGTTTTTAGTCTTGAACGGTTTAATCTTATGCTGAGTGGTTGATATTTCCAATTGGGCAAGTCAAGATAGAACACTTTCCATAAGTTGTGTATGTTATAAGTTAATAATCTATTGGGCCTTTTCCAAGTTAAAA ]
[-] EMBL CF331015 [ CCTCAAGTTGCATAAAATCGTGTTCTT GGAAGTACAATCTAGCTATTTCAAGGATGAGCTCTTTAGGCAGAAGTGTGATTGGAAAAGATAGCTCATAGACGTTTTTGTAGT CA TCAAACTATGATAAATTTAGATGGATGATATGCACTGAAGTTACCCTCGAATTA CTAGCTTCCTGTTTTTAGTCTTGAACGGTTTAATCTTATGCTGAGTGGTTGATATTTCCAATTGGGCAAGTCAAGATAGAACACTTTCCATAAGTTGTGTATGTTATAAGTTAATAATCTATTGGGCCTTTTCCAAGTTAAAAA ]
[+] EMBL AU091632 [ AAGATCGCTNATAGACGTTTTTGTAGTCCANAAAAACTATGATAAATTTAGATGGATGATATGCACTGAAGTTACCCTCGAATTACCTAGNTTCCTGTTTTTAGTCTTGANCGGTTGNATCTTATGCTGAGTGGTTGATATTTCCAATTGGGCAAGTCAAGATAGAACACTTTNCATAAGTTGTGTATGTNATAAGTTNATAATCTATTGGGCCTTTTCCAAGTTAAAAAAAAAAAAAAAAAAAA ]
consensusID : consensus_12889#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence
[GAAGAATTTCAAGAAGGGTCTTCTTACTGATCAAACATTGCCCCTACTCAATGACAGTGCACTTAGAGATGTGAAGATCCCCCCTGGTCCCAGACTTCTCATCCTTGATCACATTCAAAGAGACCCTGAGTTAACGAAATCAACTTAAATCGATTGCCACAGCCTGTTGGCACCAGCTTTTCCTCAAGTTGCATAAAATCGTGTTCTTGGAAGTACAATCTAGCTATTTCAAGGATGAGCTCTTTAGGCAGAAGTGTGATTGGAAAAGATAGCTCATAGACGTTTTTGTAGTCATCAAACTATGATAAATTTAGGATGGAGGNTATGGNAAAGCTNGGGNNCCANNGGGGCGTTTCNANCNNNGNTGGGGGNNNNGCGTNGGTGGGNGNGTTGNGNGTTANTGNGNCGNGNGNGGGTTGGTGTGNTNTGGGGNTNGGGTTGTNAGGGNNNNGNTGTGNNG]
[+] EMBL OS0891A [GAAGAATTTCAAGAAGGGTCTTCTTACTGATCAAACATTGCCCCTACTCAATGACAGTGCACTTAGAGATGTGAAGATCCCCCCTGGTCCCAGACTTCTCATCCTTGATCACATTCAAAGAGACCCTGAGTTAACGAAATCAACTTAAATCGATTGCCACAGCCTGTTGGCACCAGCTTTTCCTCAAGTTGCATAAAATCGTGTTCTTGGAAGTACAATCTAGCTATTTCAAGGATGAGCTCTTTAGGCAGAAGTGTGATTGGAAAAGATAGCTCATAGACGTTTTTGTAGTCATCAAACTATGATAAATTTAGGATGGAGGNTATGGNAAAGCTNGGGNNCCANNGGGGCGTTTCNANCNNNGNTGGGGGNNNNGCGTNGGTGGGNGNGTTGNGNGTTANTGNGNCGNGNGNGGGTTGGTGTGNTNTGGGGNTNGGGTTGTNAGGGNNNNGNTGTGNNG]
consensusID : consensus_12889#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence
[ATNCTTTGTATTNANANTGGTCACATACNGCTCNTCCTTGATCACATTCAAAGAGACCTGAGTTGGCGAGTCAACTTAAATCGATTGCCACAGCCTGTTGGCACCAGCTTTTCCTCAAGTTGCATAAAATCGTGTTCTTGGAAGTACAATCTAGCTATTTCAAGGATGANCTCTTTANGCAGAAGTGTGATTGGAAAAGATAGCTCATANACGTTTNTGTAGTCATCAAACTATGATAAATTTAGATGGGATGATATGCACTGAANTTACCCCCCAAATTACTANCTTCCCNGTTTTTAGTTTTGAACGGGTTGAATCTTATGCTGAGTGGTTGATATTTCCAATTGGGCNAGTCAAGATANAACACTTCCCATAAGTTGGGGTTTGNTTNTAAATTTAATAANCTATTGGGG]
[+] EMBL BE228444 [ATNCTTTGTATTNANANTGGTCACATACNGCTCNTCCTTGATCACATTCAAAGAGACCTGAGTTGGCGAGTCAACTTAAATCGATTGCCACAGCCTGTTGGCACCAGCTTTTCCTCAAGTTGCATAAAATCGTGTTCTTGGAAGTACAATCTAGCTATTTCAAGGATGANCTCTTTANGCAGAAGTGTGATTGGAAAAGATAGCTCATANACGTTTNTGTAGTCATCAAACTATGATAAATTTAGATGGGATGATATGCACTGAANTTACCCCCCAAATTACTANCTTCCCNGTTTTTAGTTTTGAACGGGTTGAATCTTATGCTGAGTGGTTGATATTTCCAATTGGGCNAGTCAAGATANAACACTTCCCATAAGTTGGGGTTTGNTTNTAAATTTAATAANCTATTGGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12889#0 ACAGCTATCTTTTCCCATTTCTCCCCGCCCCCCCAACCCCACCTCCAATCCCTCTCGTCG 60
consensus_12889#2 ------------------------------------------------------------
consensus_12889#1 ------------------------------------------------------------
consensus_12889#0 TCGAGGCGAGCGCGGGCGCGGGCGCGGGCGGCGAGATGGAAGGGATGGGGCAGCAGAAGA 120
consensus_12889#2 ------------------------------------------------------------
consensus_12889#1 ------------------------------------------------------------
consensus_12889#0 GGCGGCCGCTGGTGGTGATGGCGTCGGCGCAGGCGGCGGCGCGGGGTGGGGCCAACCCGC 180
consensus_12889#2 ------------------------------------------------------------
consensus_12889#1 ------------------------------------------------------------
consensus_12889#0 TCGCGGAGCTGACCGACCGCGTCAAGACCCTGGAGGCCGGCCTGCGGGCGTGGCTGGCGA 240
consensus_12889#2 ------------------------------------------------------------
consensus_12889#1 ------------------------------------------------------------
consensus_12889#0 AGCAGCCCACGCACGTCGAGGCCGCCGTCGCCACCGCCGTCGGGGCCGTGCAGGGCGGCG 300
consensus_12889#2 ------------------------------------------------------------
consensus_12889#1 ------------------------------------------------------------
consensus_12889#0 CCCTCGGCGGGCTGATGGGCACGCTCGCGCCGGACGGCGGGTCGCCGTTCCCCGTGCCGC 360
consensus_12889#2 ------------------------------------------------------------
consensus_12889#1 ------------------------------------------------------------
consensus_12889#0 AGCCGCCGCCCGGGGCCGACCCCAACGCCCTCGCCTCCTTCAAGCAGGCGCAGGCTTTGG 420
consensus_12889#2 ------------------------------------------------------------
consensus_12889#1 ------------------------------------------------------------
consensus_12889#0 CAGGTGGACCACTGGTGCAAGCCCGAAACTTTGCCGTCATGACTGGTGCTAATGCAGGAA 480
consensus_12889#2 ------------------------------------------------------------
consensus_12889#1 ------------------------------------------------------------
consensus_12889#0 TATCTTGTGTTATGAGAAGGATAAGAGGAGTGGAGGATGTCCAGGGCAGCATGGCAGCAG 540
consensus_12889#2 ------------------------------------------------------------
consensus_12889#1 ------------------------------------------------------------
consensus_12889#0 CGTTTGGTTCTGGCGCTTTATTCTCCATTGTGAGTGGAATGGGGTCTCCAAATCCAGTTG 600
consensus_12889#2 ------------------------------------------------------------
consensus_12889#1 ------------------------------------------------------------
consensus_12889#0 CTAATGCAATTACAACTGGTGTAGCTTTTGCAGTATTTCAAGGTGGTTTTTTCATGATTG 660
consensus_12889#2 ------------------------------------------------------------
consensus_12889#1 ------------------------------------------------------------
consensus_12889#0 GTCAGAAATTTTCGCAGCCACCGAGTGAAGATATATACTATTCCCGTGGGAGAAATATGT 720
consensus_12889#2 ------------------------------------------------------------
consensus_12889#1 ------------------------------------------------------------
consensus_12889#0 TGAAACAATTAGGGCTTCAGAACTATGAGAAGAATTTCAAGAAGGGTCTTCTTACTGATC 780
consensus_12889#2 ------------------------------------------------------------
consensus_12889#1 ----------------------------GAAGAATTTCAAGAAGGGTCTTCTTACTGATC 32
consensus_12889#0 AAACATTGCCCCTACTCAATGACAGTGCACTTAGAGATGTGAAGATCCCCCCTGGTCCCA 840
consensus_12889#2 -----------------------------------ATNCTTTGTATTNANANTGGTCACA 25
consensus_12889#1 AAACATTGCCCCTACTCAATGACAGTGCACTTAGAGATGTGAAGATCCCCCCTGGTCCCA 92
* ** ***** **
consensus_12889#0 GACTTCTCATCCTTGATCACATTCAAAGAGACCCTGAGTTAACGAAATCAACTTAAATCG 900
consensus_12889#2 TACNGCTCNTCCTTGATCACATTCAAAGAGACC-TGAGTTGGCGAG-TCAACTTAAATCG 83
consensus_12889#1 GACTTCTCATCCTTGATCACATTCAAAGAGACCCTGAGTTAACGAAATCAACTTAAATCG 152
** *** ************************ ****** *** *************
consensus_12889#0 ATTGCCACAGCCTGTTGGCACCAGCTTTTCCTCAAGTTGCATAAAATCGTGTTCTTGGAA 960
consensus_12889#2 ATTGCCACAGCCTGTTGGCACCAGCTTTTCCTCAAGTTGCATAAAATCGTGTTCTTGGAA 143
consensus_12889#1 ATTGCCACAGCCTGTTGGCACCAGCTTTTCCTCAAGTTGCATAAAATCGTGTTCTTGGAA 212
************************************************************
consensus_12889#0 GTACAATCTAGCTATTTCAAGGATGAGCTCTTTAGGCAGAAGTGTGATTGGAAAAGATAG 1020
consensus_12889#2 GTACAATCTAGCTATTTCAAGGATGANCTCTTTANGCAGAAGTGTGATTGGAAAAGATAG 203
consensus_12889#1 GTACAATCTAGCTATTTCAAGGATGAGCTCTTTAGGCAGAAGTGTGATTGGAAAAGATAG 272
************************** ******* *************************
consensus_12889#0 CTCATAGACGTTTTTGTAGTCATCAAACTATGATAAATTTAGATGG-ATGATATGCACTG 1079
consensus_12889#2 CTCATANACGTTTNTGTAGTCATCAAACTATGATAAATTTAGATGGGATGATATGCACTG 263
consensus_12889#1 CTCATAGACGTTTTTGTAGTCATCAAACTATGATAAATTTAGGATGGAGGNTATG----G 328
****** ****** **************************** * * * **** *
consensus_12889#0 AAGTTACCCTC-GAATTACTAGCTTCC-TGTTTTTAGTCTTGAACGG-TTGAATCTTATG 1136
consensus_12889#2 AANTTACCCCCCAAATTACTANCTTCCCNGTTTTTAGTTTTGAACGGGTTGAATCTTATG 323
consensus_12889#1 NAA--AGCTNGGGNNCCANNGGGG----CGTTTCNANCNNNGNTGGGGGNNNNGCGTNGG 382
* * * * **** * * ** * * *
consensus_12889#0 CTGAGTGGTTGATATTTCCAATTGGGCAAGTCAAGATAGAACACTTTCCATAAGTTGTGT 1196
consensus_12889#2 CTGAGTGGTTGATATTTCCAATTGGGCNAGTCAAGATANAACACTTCCCATAAGTTGGGG 383
consensus_12889#1 TGGGNGNGTTGNGNGTT---ANTGNGNCGNGNGNGGGTTGGTGTGNTNTG-GGGNTNGGG 438
* **** ** * ** * * * * *
consensus_12889#0 AT--GTTATAAGTT-AATAATCTATTGGGCCTTTTCCAAGTTAAAAAAAAAAAAAAAAAA 1253
consensus_12889#2 TTTGNTTNTAAATTTAATAANCTATTGGGG------------------------------ 413
consensus_12889#1 TT--GTNAGGGNNNNGNTGTGNNG------------------------------------ 460
* * *
consensus_12889#0 AAAAAAA 1260
consensus_12889#2 -------
consensus_12889#1 -------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||