These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1289#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 897 fasta sequence [GCACGAGCCATTTTCTACTCACACTTGGGATCGGTGCTCGAACGAATTCCACTCGACTGACTCCATGGCCACCAACGCCGCAGCGCCGCCGTGCCCGTGCTACGACACGCCGGAGGGCGTGGACATCCTCGGCCGGTACGACCCGGAGTTCGCGGCCATCCTCACCCGCGACTCGCTGGCCTTCGTGGCCGGCCTGCAGCGCGAGTTCCGCGGCGCCGTCCGGTACGCCATGGAGCGCANGCGGGAGGCGCAGCGGCGGTACGACGCCGGCGAGCTCCCCCGGTTCGACCCGGCCACGAGGCCCGTTCGCGAGGCAAGCGGCTGGCGTGCGCCCCCGTGCCGCCGGGCATTGNCGACCGCGACCGTCAGATCACCGGCCCCGCCGAGCCGCGCAAGATGGCATCAACGCCCTCAACTTCGGCGCCAAGGGCTTCATGGCTGACTTCGAGGACACGCTGTTNNCCACGTTGAGAACCTGATCGCNGGCAGTGAACCTGTGCCNAAACGTGCCGGGACACACCTACCGCGACACGGNCAAGGGGGCGATCAGGCTCGAGACGCCCCGGACGCTTCTCTTGAGCCCCCCGTTGGACTTCTCGGAGGGCGCGTTTCTTNACGAAGCCGCCAATGGTTGCTGTAACTTGGCCTTACTCTTCAAAGCANCCGTCTTCGTTCGGGCGAGGCCAAATGGGCCTGTTTTTCCTCCCAAGGAGACATTGTGGGAGAGGTATGGGAGGGGTGGGGGTGTNTGGAGAGCAAGAGGGGGGAGGATGGGGAGTNTTCTTTTTCCTCTNNTTTTTTTTTNTTTCTTTCTTCTTTTCTGGTTTTTTATNGTAANNTGTATGATTAATGGTTAGCTGGATCTATGAGTATGTATGAAATATANGAGGGTGTCGT] [+] EMBL AW155211 [GCACGAGCCATTTTCTACTCACACTTGGGATCGGTGCTCGAACGAATTCCACTCGACTGACTCCATGGCCACCAACGCCGCAGCGCCGCCGTGCCCGTGCTACGACACGCCGGAGGGCGTGGACATCCTCGGCCGGTACGACCCGGAGTTCGCGGCCATCCTCACCCGCGACTCGCTGGCCTTCGTGGCCGGCCTGCAGCGCGAGTTCCGCGGCGCCGTCCGGTACGCCATGGAGCGCANGCGGGAGGCGCAGCGGCGGTACGACGCCGGCGAGCTCCCCCGGTTCGACCCGGCCACGAGGCCCGTTCGCGAGGCAAGCGGCTGGCGTGCGCCCCCGTGCCGCCGGGCATTGNCGACCGCGACCGTCAGATCACCGGCCCCGCCGAGCCGCGCAAGATGGCATCAACGCCCTCAACTTCGGCGCCAAGGGCTTCATGGCTGACTTCGAGGACACGCTGTTNNCCACGTTGAGAACCTGATCGCNGGCAGTGAACCTGTGCCNAAACGTGCCGGGACACACCTACCGCGACACGGNCAAGGGGGCGATCAGGCTCGAGACGCCCCGGACGCTTCTCTTGAGCCCCCCGTTGGACTTCTCGGAGGGCGCGTTTCTTNACGAAGCCGCCAATGGTTGCTGTAACTTGGCCTTACTCTTCAAAGCANCCGTCTTCGTTCGGGCGAGGCCAAATGGGCCTGTTTTTCCTCCCAAGGAGACATTGTGGGAGAGGTATGGGAGGGGTGGGGGTGTNTGGAGAGCAAGAGGGGGGAGGATGGGGAGTNTTCTTTTTCCTCTNNTTTTTTTTTNTTTCTTTCTTCTTTTCTGGTTTTTTATNGTAANNTGTATGATTAATGGTTAGCTGGATCTATGAGTATGTATGAAATATANGAGGGTGTCGT] consensusID : consensus_1289#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [ACTCACACTTGGGATCGGTGCTCGAACGAATTCCACTCGACTGACTCCATGGCCACCAACGCCGCAGCGCCGCCGTGCCCGTGCTACGACACGCCGGAGGGCGTGGACATCCTCGGCCGGTACGACCCGGAGTTCGCGGCCATCCTCACCCGCGACTCGCTGGCCTTCGTGGCCGGCCTGCAGCGCGAGTTCCGCGGCGCCGTCCGGTACGCCATGGAGCGCAGGCGGGAGGCGCAGCGGCGGTACGACGCCGGCGAGCTCCCCCGGTTCGACCCGGCCACGAGGCCCGTCCGCGAGGCAAGCGGCTGGGCGTGCGCCCCCGTGCCGCCGGCCATCGCCGACCGCACCGTCGAGATCACCGGCCCCGCCGAGCCGCGCAAGATGGTCATCAACGCCCTCAACTCCCGCGCCAAGGGCTTCATGGCTGACTTCGAGGACGCTCTGAGTCCGACGT] [+] EMBL CB641341 [ACTCACACTTGGGATCGGTGCTCGAACGAATTCCACTCGACTGACTCCATGGCCACCAACGCCGCAGCGCCGCCGTGCCCGTGCTACGACACGCCGGAGGGCGTGGACATCCTCGGCCGGTACGACCCGGAGTTCGCGGCCATCCTCACCCGCGACTCGCTGGCCTTCGTGGCCGGCCTGCAGCGCGAGTTCCGCGGCGCCGTCCGGTACGCCATGGAGCGCAGGCGGGAGGCGCAGCGGCGGTACGACGCCGGCGAGCTCCCCCGGTTCGACCCGGCCACGAGGCCCGTCCGCGAGGCAAGCGGCTGGGCGTGCGCCCCCGTGCCGCCGGCCATCGCCGACCGCACCGTCGAGATCACCGGCCCCGCCGAGCCGCGCAAGATGGTCATCAACGCCCTCAACTCCCGCGCCAAGGGCTTCATGGCTGACTTCGAGGACGCTCTGAGTCCGACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1289#0 GCACGAGCCATTTTCTACTCACACTTGGGATCGGTGCTCGAACGAATTCCACTCGACTGA 60 consensus_1289#1 ----------------ACTCACACTTGGGATCGGTGCTCGAACGAATTCCACTCGACTGA 44 ******************************************** consensus_1289#0 CTCCATGGCCACCAACGCCGCAGCGCCGCCGTGCCCGTGCTACGACACGCCGGAGGGCGT 120 consensus_1289#1 CTCCATGGCCACCAACGCCGCAGCGCCGCCGTGCCCGTGCTACGACACGCCGGAGGGCGT 104 ************************************************************ consensus_1289#0 GGACATCCTCGGCCGGTACGACCCGGAGTTCGCGGCCATCCTCACCCGCGACTCGCTGGC 180 consensus_1289#1 GGACATCCTCGGCCGGTACGACCCGGAGTTCGCGGCCATCCTCACCCGCGACTCGCTGGC 164 ************************************************************ consensus_1289#0 CTTCGTGGCCGGCCTGCAGCGCGAGTTCCGCGGCGCCGTCCGGTACGCCATGGAGCGCAN 240 consensus_1289#1 CTTCGTGGCCGGCCTGCAGCGCGAGTTCCGCGGCGCCGTCCGGTACGCCATGGAGCGCAG 224 *********************************************************** consensus_1289#0 GCGGGAGGCGCAGCGGCGGTACGACGCCGGCGAGCTCCCCCGGTTCGACCCGGCCACGAG 300 consensus_1289#1 GCGGGAGGCGCAGCGGCGGTACGACGCCGGCGAGCTCCCCCGGTTCGACCCGGCCACGAG 284 ************************************************************ consensus_1289#0 GCCCGTTCGCGAGGCAAGCGGCTGG-CGTGCGCCCCCGTGCCGCCGGGCATTGNCGACCG 359 consensus_1289#1 GCCCGTCCGCGAGGCAAGCGGCTGGGCGTGCGCCCCCGTGCCGCCGGCCATCGCCGACCG 344 ****** ****************** ********************* *** * ****** consensus_1289#0 CGACCGTC-AGATCACCGGCCCCGCCGAGCCGCGCAAGATGG-CATCAACGCCCTCAACT 417 consensus_1289#1 C-ACCGTCGAGATCACCGGCCCCGCCGAGCCGCGCAAGATGGTCATCAACGCCCTCAACT 403 * ****** ********************************* ***************** consensus_1289#0 TCGGCGCCAAGGGCTTCATGGCTGACTTCGAGGACACGCTGTTNNCCACGTTGAGAACCT 477 consensus_1289#1 CCCGCGCCAAGGGCTTCATGGCTGACTTCGAGGACGCTCTGAGTCCGACGT--------- 454 * ******************************** * *** * **** consensus_1289#0 GATCGCNGGCAGTGAACCTGTGCCNAAACGTGCCGGGACACACCTACCGCGACACGGNCA 537 consensus_1289#1 ------------------------------------------------------------ consensus_1289#0 AGGGGGCGATCAGGCTCGAGACGCCCCGGACGCTTCTCTTGAGCCCCCCGTTGGACTTCT 597 consensus_1289#1 ------------------------------------------------------------ consensus_1289#0 CGGAGGGCGCGTTTCTTNACGAAGCCGCCAATGGTTGCTGTAACTTGGCCTTACTCTTCA 657 consensus_1289#1 ------------------------------------------------------------ consensus_1289#0 AAGCANCCGTCTTCGTTCGGGCGAGGCCAAATGGGCCTGTTTTTCCTCCCAAGGAGACAT 717 consensus_1289#1 ------------------------------------------------------------ consensus_1289#0 TGTGGGAGAGGTATGGGAGGGGTGGGGGTGTNTGGAGAGCAAGAGGGGGGAGGATGGGGA 777 consensus_1289#1 ------------------------------------------------------------ consensus_1289#0 GTNTTCTTTTTCCTCTNNTTTTTTTTTNTTTCTTTCTTCTTTTCTGGTTTTTTATNGTAA 837 consensus_1289#1 ------------------------------------------------------------ consensus_1289#0 NNTGTATGATTAATGGTTAGCTGGATCTATGAGTATGTATGAAATATANGAGGGTGTCGT 897 consensus_1289#1 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||