cluster # 1289

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1289 cluster # 1289 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1289#0 length = 897 sequences # 1

consensus_1289#1 length = 454 sequences # 1

consensusID : consensus_1289#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 897
fasta sequence

                              [GCACGAGCCATTTTCTACTCACACTTGGGATCGGTGCTCGAACGAATTCCACTCGACTGACTCCATGGCCACCAACGCCGCAGCGCCGCCGTGCCCGTGCTACGACACGCCGGAGGGCGTGGACATCCTCGGCCGGTACGACCCGGAGTTCGCGGCCATCCTCACCCGCGACTCGCTGGCCTTCGTGGCCGGCCTGCAGCGCGAGTTCCGCGGCGCCGTCCGGTACGCCATGGAGCGCANGCGGGAGGCGCAGCGGCGGTACGACGCCGGCGAGCTCCCCCGGTTCGACCCGGCCACGAGGCCCGTTCGCGAGGCAAGCGGCTGGCGTGCGCCCCCGTGCCGCCGGGCATTGNCGACCGCGACCGTCAGATCACCGGCCCCGCCGAGCCGCGCAAGATGGCATCAACGCCCTCAACTTCGGCGCCAAGGGCTTCATGGCTGACTTCGAGGACACGCTGTTNNCCACGTTGAGAACCTGATCGCNGGCAGTGAACCTGTGCCNAAACGTGCCGGGACACACCTACCGCGACACGGNCAAGGGGGCGATCAGGCTCGAGACGCCCCGGACGCTTCTCTTGAGCCCCCCGTTGGACTTCTCGGAGGGCGCGTTTCTTNACGAAGCCGCCAATGGTTGCTGTAACTTGGCCTTACTCTTCAAAGCANCCGTCTTCGTTCGGGCGAGGCCAAATGGGCCTGTTTTTCCTCCCAAGGAGACATTGTGGGAGAGGTATGGGAGGGGTGGGGGTGTNTGGAGAGCAAGAGGGGGGAGGATGGGGAGTNTTCTTTTTCCTCTNNTTTTTTTTTNTTTCTTTCTTCTTTTCTGGTTTTTTATNGTAANNTGTATGATTAATGGTTAGCTGGATCTATGAGTATGTATGAAATATANGAGGGTGTCGT]

[+] EMBL AW155211             [GCACGAGCCATTTTCTACTCACACTTGGGATCGGTGCTCGAACGAATTCCACTCGACTGACTCCATGGCCACCAACGCCGCAGCGCCGCCGTGCCCGTGCTACGACACGCCGGAGGGCGTGGACATCCTCGGCCGGTACGACCCGGAGTTCGCGGCCATCCTCACCCGCGACTCGCTGGCCTTCGTGGCCGGCCTGCAGCGCGAGTTCCGCGGCGCCGTCCGGTACGCCATGGAGCGCANGCGGGAGGCGCAGCGGCGGTACGACGCCGGCGAGCTCCCCCGGTTCGACCCGGCCACGAGGCCCGTTCGCGAGGCAAGCGGCTGGCGTGCGCCCCCGTGCCGCCGGGCATTGNCGACCGCGACCGTCAGATCACCGGCCCCGCCGAGCCGCGCAAGATGGCATCAACGCCCTCAACTTCGGCGCCAAGGGCTTCATGGCTGACTTCGAGGACACGCTGTTNNCCACGTTGAGAACCTGATCGCNGGCAGTGAACCTGTGCCNAAACGTGCCGGGACACACCTACCGCGACACGGNCAAGGGGGCGATCAGGCTCGAGACGCCCCGGACGCTTCTCTTGAGCCCCCCGTTGGACTTCTCGGAGGGCGCGTTTCTTNACGAAGCCGCCAATGGTTGCTGTAACTTGGCCTTACTCTTCAAAGCANCCGTCTTCGTTCGGGCGAGGCCAAATGGGCCTGTTTTTCCTCCCAAGGAGACATTGTGGGAGAGGTATGGGAGGGGTGGGGGTGTNTGGAGAGCAAGAGGGGGGAGGATGGGGAGTNTTCTTTTTCCTCTNNTTTTTTTTTNTTTCTTTCTTCTTTTCTGGTTTTTTATNGTAANNTGTATGATTAATGGTTAGCTGGATCTATGAGTATGTATGAAATATANGAGGGTGTCGT]




>consensus_1289#0
GCACGAGCCATTTTCTACTCACACTTGGGATCGGTGCTCGAACGAATTCCACTCGACTGA
CTCCATGGCCACCAACGCCGCAGCGCCGCCGTGCCCGTGCTACGACACGCCGGAGGGCGT
GGACATCCTCGGCCGGTACGACCCGGAGTTCGCGGCCATCCTCACCCGCGACTCGCTGGC
CTTCGTGGCCGGCCTGCAGCGCGAGTTCCGCGGCGCCGTCCGGTACGCCATGGAGCGCAN
GCGGGAGGCGCAGCGGCGGTACGACGCCGGCGAGCTCCCCCGGTTCGACCCGGCCACGAG
GCCCGTTCGCGAGGCAAGCGGCTGGCGTGCGCCCCCGTGCCGCCGGGCATTGNCGACCGC
GACCGTCAGATCACCGGCCCCGCCGAGCCGCGCAAGATGGCATCAACGCCCTCAACTTCG
GCGCCAAGGGCTTCATGGCTGACTTCGAGGACACGCTGTTNNCCACGTTGAGAACCTGAT
CGCNGGCAGTGAACCTGTGCCNAAACGTGCCGGGACACACCTACCGCGACACGGNCAAGG
GGGCGATCAGGCTCGAGACGCCCCGGACGCTTCTCTTGAGCCCCCCGTTGGACTTCTCGG
AGGGCGCGTTTCTTNACGAAGCCGCCAATGGTTGCTGTAACTTGGCCTTACTCTTCAAAG
CANCCGTCTTCGTTCGGGCGAGGCCAAATGGGCCTGTTTTTCCTCCCAAGGAGACATTGT
GGGAGAGGTATGGGAGGGGTGGGGGTGTNTGGAGAGCAAGAGGGGGGAGGATGGGGAGTN
TTCTTTTTCCTCTNNTTTTTTTTTNTTTCTTTCTTCTTTTCTGGTTTTTTATNGTAANNT
GTATGATTAATGGTTAGCTGGATCTATGAGTATGTATGAAATATANGAGGGTGTCGT

consensusID : consensus_1289#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence

                              [ACTCACACTTGGGATCGGTGCTCGAACGAATTCCACTCGACTGACTCCATGGCCACCAACGCCGCAGCGCCGCCGTGCCCGTGCTACGACACGCCGGAGGGCGTGGACATCCTCGGCCGGTACGACCCGGAGTTCGCGGCCATCCTCACCCGCGACTCGCTGGCCTTCGTGGCCGGCCTGCAGCGCGAGTTCCGCGGCGCCGTCCGGTACGCCATGGAGCGCAGGCGGGAGGCGCAGCGGCGGTACGACGCCGGCGAGCTCCCCCGGTTCGACCCGGCCACGAGGCCCGTCCGCGAGGCAAGCGGCTGGGCGTGCGCCCCCGTGCCGCCGGCCATCGCCGACCGCACCGTCGAGATCACCGGCCCCGCCGAGCCGCGCAAGATGGTCATCAACGCCCTCAACTCCCGCGCCAAGGGCTTCATGGCTGACTTCGAGGACGCTCTGAGTCCGACGT]

[+] EMBL CB641341             [ACTCACACTTGGGATCGGTGCTCGAACGAATTCCACTCGACTGACTCCATGGCCACCAACGCCGCAGCGCCGCCGTGCCCGTGCTACGACACGCCGGAGGGCGTGGACATCCTCGGCCGGTACGACCCGGAGTTCGCGGCCATCCTCACCCGCGACTCGCTGGCCTTCGTGGCCGGCCTGCAGCGCGAGTTCCGCGGCGCCGTCCGGTACGCCATGGAGCGCAGGCGGGAGGCGCAGCGGCGGTACGACGCCGGCGAGCTCCCCCGGTTCGACCCGGCCACGAGGCCCGTCCGCGAGGCAAGCGGCTGGGCGTGCGCCCCCGTGCCGCCGGCCATCGCCGACCGCACCGTCGAGATCACCGGCCCCGCCGAGCCGCGCAAGATGGTCATCAACGCCCTCAACTCCCGCGCCAAGGGCTTCATGGCTGACTTCGAGGACGCTCTGAGTCCGACGT]




>consensus_1289#1
ACTCACACTTGGGATCGGTGCTCGAACGAATTCCACTCGACTGACTCCATGGCCACCAAC
GCCGCAGCGCCGCCGTGCCCGTGCTACGACACGCCGGAGGGCGTGGACATCCTCGGCCGG
TACGACCCGGAGTTCGCGGCCATCCTCACCCGCGACTCGCTGGCCTTCGTGGCCGGCCTG
CAGCGCGAGTTCCGCGGCGCCGTCCGGTACGCCATGGAGCGCAGGCGGGAGGCGCAGCGG
CGGTACGACGCCGGCGAGCTCCCCCGGTTCGACCCGGCCACGAGGCCCGTCCGCGAGGCA
AGCGGCTGGGCGTGCGCCCCCGTGCCGCCGGCCATCGCCGACCGCACCGTCGAGATCACC
GGCCCCGCCGAGCCGCGCAAGATGGTCATCAACGCCCTCAACTCCCGCGCCAAGGGCTTC
ATGGCTGACTTCGAGGACGCTCTGAGTCCGACGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1289#0      GCACGAGCCATTTTCTACTCACACTTGGGATCGGTGCTCGAACGAATTCCACTCGACTGA 60
consensus_1289#1      ----------------ACTCACACTTGGGATCGGTGCTCGAACGAATTCCACTCGACTGA 44
                                      ********************************************

consensus_1289#0      CTCCATGGCCACCAACGCCGCAGCGCCGCCGTGCCCGTGCTACGACACGCCGGAGGGCGT 120
consensus_1289#1      CTCCATGGCCACCAACGCCGCAGCGCCGCCGTGCCCGTGCTACGACACGCCGGAGGGCGT 104
                      ************************************************************

consensus_1289#0      GGACATCCTCGGCCGGTACGACCCGGAGTTCGCGGCCATCCTCACCCGCGACTCGCTGGC 180
consensus_1289#1      GGACATCCTCGGCCGGTACGACCCGGAGTTCGCGGCCATCCTCACCCGCGACTCGCTGGC 164
                      ************************************************************

consensus_1289#0      CTTCGTGGCCGGCCTGCAGCGCGAGTTCCGCGGCGCCGTCCGGTACGCCATGGAGCGCAN 240
consensus_1289#1      CTTCGTGGCCGGCCTGCAGCGCGAGTTCCGCGGCGCCGTCCGGTACGCCATGGAGCGCAG 224
                      *********************************************************** 

consensus_1289#0      GCGGGAGGCGCAGCGGCGGTACGACGCCGGCGAGCTCCCCCGGTTCGACCCGGCCACGAG 300
consensus_1289#1      GCGGGAGGCGCAGCGGCGGTACGACGCCGGCGAGCTCCCCCGGTTCGACCCGGCCACGAG 284
                      ************************************************************

consensus_1289#0      GCCCGTTCGCGAGGCAAGCGGCTGG-CGTGCGCCCCCGTGCCGCCGGGCATTGNCGACCG 359
consensus_1289#1      GCCCGTCCGCGAGGCAAGCGGCTGGGCGTGCGCCCCCGTGCCGCCGGCCATCGCCGACCG 344
                      ****** ****************** ********************* *** * ******

consensus_1289#0      CGACCGTC-AGATCACCGGCCCCGCCGAGCCGCGCAAGATGG-CATCAACGCCCTCAACT 417
consensus_1289#1      C-ACCGTCGAGATCACCGGCCCCGCCGAGCCGCGCAAGATGGTCATCAACGCCCTCAACT 403
                      * ****** ********************************* *****************

consensus_1289#0      TCGGCGCCAAGGGCTTCATGGCTGACTTCGAGGACACGCTGTTNNCCACGTTGAGAACCT 477
consensus_1289#1      CCCGCGCCAAGGGCTTCATGGCTGACTTCGAGGACGCTCTGAGTCCGACGT--------- 454
                       * ******************************** * ***    * ****         

consensus_1289#0      GATCGCNGGCAGTGAACCTGTGCCNAAACGTGCCGGGACACACCTACCGCGACACGGNCA 537
consensus_1289#1      ------------------------------------------------------------
                                                                                  

consensus_1289#0      AGGGGGCGATCAGGCTCGAGACGCCCCGGACGCTTCTCTTGAGCCCCCCGTTGGACTTCT 597
consensus_1289#1      ------------------------------------------------------------
                                                                                  

consensus_1289#0      CGGAGGGCGCGTTTCTTNACGAAGCCGCCAATGGTTGCTGTAACTTGGCCTTACTCTTCA 657
consensus_1289#1      ------------------------------------------------------------
                                                                                  

consensus_1289#0      AAGCANCCGTCTTCGTTCGGGCGAGGCCAAATGGGCCTGTTTTTCCTCCCAAGGAGACAT 717
consensus_1289#1      ------------------------------------------------------------
                                                                                  

consensus_1289#0      TGTGGGAGAGGTATGGGAGGGGTGGGGGTGTNTGGAGAGCAAGAGGGGGGAGGATGGGGA 777
consensus_1289#1      ------------------------------------------------------------
                                                                                  

consensus_1289#0      GTNTTCTTTTTCCTCTNNTTTTTTTTTNTTTCTTTCTTCTTTTCTGGTTTTTTATNGTAA 837
consensus_1289#1      ------------------------------------------------------------
                                                                                  

consensus_1289#0      NNTGTATGATTAATGGTTAGCTGGATCTATGAGTATGTATGAAATATANGAGGGTGTCGT 897
consensus_1289#1      ------------------------------------------------------------