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Oryza sativa
cluster # 12910 cluster # 12910       Sequences # 11       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12910#0 length = 1433 sequences # 8  
consensus_12910#1 length = 700 sequences # 1  
consensus_12910#2 length = 376 sequences # 1  
consensus_12910#3 length = 252 sequences # 1  

consensusID : consensus_12910#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1433
fasta sequence
                              [CTACCCCCTCTTCTTCCTCCGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCCTCAACCGTGCGGCTGCCTCCTCCTCGTCGCTGGGCATGGATGTGCACCCGCCGAATGCGGCCGCCTCCTCGCTGGAGGAGTTGTTCCCGCACCAGCCCGCCACGGAAAGTGATAGAAGTGGCATAGAGTGGCTCTCTGTCTATGTAGAGGACTGCTTGTCAACCTCTGCATCCTGCACAAACCCTGTCTCTGCAGAACTACCGCCTATTACAATGGCAAGTCAAGGTGCTGCAAAACCAAAGTTACCACCACGCTCATCTACCAATGCAAGAAAAAAGAAAAGGAGCCTGGCATCTGTCATAAGCGACACTGATGACCAACATTGTATCACGCTGTTTGTCGAGCCACCGCTACTCCTGCTCGATCATAAGGACTGGCTAGCAGAGAGTGAGCTTATCCTCCCCAAGAAGGACAAAGATGAAGAACTTGTCCAAGAGCAAGAACAAGAGGAGGAAGAGAATTACAAAATGAGTGCAGGAATGCAATTCCAGCAGGAGCAACTGGTGATCACTTGTAGCTATTGTTTGTCCAGCCAATCACCACAGTGGTGGGATGGTCCATCAGGGCCTACCTGCGATGCTTGTCGTCTGAGGATTGAGGCGAGGAATGGGCACACCACCAGTTCCAAGAAGCGCTATGGCCAAGAGATTGACAAAGAACAGGACATAGGAAAGCGGCGAGATAAGAAGAAGATCAAGAAGGCTGTTTATGTGAA-TGATGAGCTGC-TATCGGA-GGAGCCAA-TGAAGAGGTGCACCCATTGCTTGTCCTACAAGACGCCACAGT-GGAGGACCGGTCCCTTGGGGCCTAAGACGCTATGCAATGCTTGC-GGTGTGAGGTTCAAGTCTGGCAGGCTGCTGCCGGAATACAGGCCT-GCTAATAGTCCAACTTTTGT-GAGT-GACATACACTCCAATTCTCATAAGAAGGTCATGCAGCTGAGGAATTCTGTTCCACACCCAAGGAAGTGAACTGGTGGTCGGGAACGTCTCGATCTGTTGCGTTTAGTTTTAGGAACTCTTCAGTTGTAGAAGTAAGCTGATAGTGAAGAACATCTTAATCTGTCTCATTGAATTTTAGGCGGGCTCCTTGGTCGTAGAAGTGAGCTGATAATCACATCTCAATCTGCTGCATTGAGCTTTTAGGGGCTCTCAGCCTTAGATGCTGAGAAAACGAAAGCAGAATCTAGTTAGGCGTCATGAACTCTTTGTTAGCTCTAGCCGTTTTTTAACTTGAGAAATTAATCTGCTAGTTGATGGAGATCATCAGTTTAATACCAATGGGTGGTTGCTACCCTTGTTATCCCACCATTGTCTTGCAGCATGCTTGTTCTGTGATACTCGCTGAATATGTTTGCAAGATGGAAATCAGAATTCAGA]

[+] EMBL AK101421             [CTACCCCCTCTTCTTCCTCCGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCCTCAACCGTGCGGCTGCCTCCTCCTCGTCGCTGGGCATGGATGTGCACCCGCCGAATGCGGCCGCCTCCTCGCTGGAGGAGTTGTTCCCGCACCAGCCCGCCACGGAAAGTGATAGAAGTGGCATAGAGTGGCTCTCTGTCTATGTAGAGGACTGCTTGTCAACCTCTGCATCCTGCACAAACCCTGTCTCTGCAGAACTACCGCCTATTACAATGGCAAGTCAAGGTGCTGCAAAACCAAAGTTACCACCACGCTCATCTACCAATGCAAGAAAAAAGAAAAGGAGCCTGGCATCTGTCATAAGCGACACTGATGACCAACATTGTATCACGCTGTTTGTCGAGCCACCGCTACTCCTGCTCGATCATAAGGACTGGCTAGCAGAGAGTGAGCTTATCCTCCCCAAGAAGGACAAAGATGAAGAACTTGTCCAAGAGCAAGAACAAGAGGAGGAAGAGAATTACAAAATGAGTGCAGGAATGCAATTCCAGCAGGAGCAACTGGTGATCACTTGTAGCTATTGTTTGTCCAGCCAATCACCACAGTGGTGGGATGGTCCATCAGGGCCTACCTGCGATGCTTGTCGTCTGAGGATTGAGGCGAGGAATGGGCACACCACCAGTTCCAAGAAGCGCTATGGCCAAGAGATTGACAAAGAACAGGACATAGGAAAGCGGCGAGATAAGAAGAAGATCAAGAAGGCTGTTTATGTGAA TGATGAGCTGC TATCGGA GGAGCCAA TGAAGAGGTGCACCCATTGCTTGTCCTACAAGACGCCACAGT GGAGGACCGGTCCCTTGGGGCCTAAGACGCTATGCAATGCTTGC GGTGTGAGGTTCAAGTCTGGCAGGCTGCTGCCGGAATACAGGCCT GCTAATAGTCCAACTTTTGT GAGT GACATACACTCCAATTCTCATAAGAAGGTCATGCAGCTGAGGAATTCTGTTCCACACCCAAGGAAGTGAACTGGTGGTCGGGAACGTCTCGATCTGTTGCGTTTAGTTTTAGGAACTCTTCAGTTGTAGAAGTAAGCTGATAGTGAAGAACATCTTAATCTGTCTCATTGAATTTTAGGCGGGCTCCTTGGTCGTAGAAGTGAGCTGATAATCACATCTCAATCTGCTGCATTGAGCTTTTAGGGGCTCTCAGCCTTAGATGCTGAGAAAACGAAAGCAGAATCTAGTTAGGCGTCATGAACTCTTTGTTAGCTCTAGCCGTTTTTTAACTTGAGAAATTAATCTGCTAGTTGTTGGAGATCATCAGTTTAATACCAATGGGTGGTTGCTACCCTTGTTATCCCACCATTGTCTTGCAGCATGCTTGTTCTGTGATACTCGCTGAATATGTTTGCAAGATGGAAATCAGAATTCAGA]
[+] EMBL CB642002             [                 TCCGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCCTCAACCGTGCGGCTGCCTCCTCCTCGTCGCTGGGCATGGATGTGCACCCGCCGAATGCGGCCGCCTCCTCGCTGGAGGAGTTGTTCCCGCACCAGCCCGCCACGGAAAGTGATAGAAGTGGCATAGAGTGGCTCTCTGTCTATGTAGAGGACTGCTTGTCAACCTCTGCATCCTGCACAAACCCTGTCTCTGCAGAACTACCGCCTATTACAATGGCAAGTCAAGGTGCTGCAAAACCAAAGTTACCACCACGCTCATCTACCAATGCAAGAAAAAAGAAAAGGAGCCTGGCATCTGTCATAAGCGACACTGATGACCAACATTGTATCACGCTGTTTGTCGAGCCACCGCTACTCCTGCTCGATCATAAGGACTGGCTAGCAGAGAGTGAGCTTATCCTCCCCAAGAAGGACAAAGATGAAGAACTTGTCCAAGAGCAAGAACAAGAGGAGGAAGAGAATTACAAAATGAGTGCAGGAATGCAATTCCAGCAGGAGCAACTGGTGATCACTTGTAGCTATTGTTTGTCCAGCCAATCACCACAGTGGTGGGATGGTCCATCAGGGCCTACCTGCGATGCTTGTCGTCTGAGGATTGAGGCGAGGAATGGGCACACCACCAGTTCCAAGAAGCGCTATGGCCAAGAGATTGACAAAGAACAGGACATAGGAAAGCGGCGAGATAAGAAGAAGATCAAGAAGGCTGTTTATGTGAA TGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CF312606             [                                    tagaaaCTCTCTCTTTCTCTCTCCTCAACCGTGCGGCTGCCTCCTCCTCGTCGCTGGGCATGGATGTGCACCCGCCGAATGCGGCCGCCTCCTCGCTGGAGGAGTTGTTCCCGCACCAGCCCGCCACGGAAAGTGATAGAAGTGGCATAGAGTGGCTCTCTGTCTATGTAGAGGACTGCTTGTCAACCTCTGCATCCTGCACAAACCCTGTCTCTGCAGAACTACCGCCTATTACAATGGCAAGTCAAGGTGCTGCAAAACCAAAGTTACCACCACGCTCATCTACCAATGCAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CF312607             [                                                   TCTCTCTCCTCAACCGTGCGGGTGCCTCTTCCTCGTCGCTGGGCATGGATGTGCACCCGCGGAATGCGGCCGCCTCCTCGATGAAGTAGTTGTTCCCGCACCAGCCCGCCACGGAAAGTGATAGAAGTGGCATAGAGTGGCTCTCTGTGTATGTAGAGGACTGCTTGTCAACCTGTGCATCCTGCACAAACCCTGTCTCTGCAGAACTACCGCCTATTACAATGGCAAGTCAAGGTTCTGCAAAACCAAAGTTACCACCACGCTCATGTACCTATGCAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU091774             [                                                                                                                                     GGAGGAGTTGTTCCCGCACCAGCCCGCCACGGAAAGTGATAGAAGTGGCATAGAGTGGCTCTCTGTCTATGTAGAGGACTGCTTGTCAACCTCTGCATCCTGCACAAACCCTGTCTCTGCAGAACTACCGCCTATTACAATGGCAAGTCAAGGTGCTGCAAAACCAAAGTTACCACCACGCTCATCTACCAATGCAAGAAAAAAGAAAAGGAGCCTGGCATCTGTCATAAGCGACACTGATGACCAACATTGTATCACGCTGTTTGTCGAGCCACCGCTACTCCTGCTCGATCATAAGGACTGGCTAGCAGAGAGTGAGCTTATCCTCCCCAAGAAGGACAAAGATGAAGAACTTGTCCAAGAGCAAGAACAAGAGGAGGAAGAGAATTACAAAATGAGTGCAGGAATGCAATTCCAGCAGGAGCAACTGGTGATCACTTGTAGCTATTGTTTGTCCAGCCAATCACCACAGTGGTGGGATGGTCCATCAGGGCCTACCTGCGATGCTTGTCGTCTGAGGATTGAGGCGAGGAATGGGCACACCACCAGTTCCAAGAAGCGCTATGGCCAAGAGATTGACAAAGAACAGGACATAGGAAAGCGGCGAGATAAGAAGAAGATCAAGAA GCTGTTTATGTGAATTGATGAGCTGCTTATCGGANGGAGCCAATTGAAGAGGTGNACCCATTGCTTGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU065218             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GAGCAAGAACAAGAGGAGGAANAGAATTACAAAATGAGTGCAGGAATGCAATTCCAGCAGGAGCAACTGGTGATCACTTGTAGCTATTGTTTGTCCAGCCAATCACCACAGTGGTGGGATGGTCCATCAGGGCCTACCTGCGATGCTTGTCGTCTGAGGATTGAGGCGAGGAATGGGCACACCACCAGTTCCAAGAAGCGCTATGGCCAAGAGATTGACAAAGAACAGGACATAGGAAAGCGGCGAGATAAGAAGAAGATCAAGAAGGCTGTTTATGTGAA TGATGAGCTGC TATCGGA GGAGCCAA TGAAGAGGTGCACCCATTGCTTGTCCTACAAGACGCCACAGTGGGAGGACCGGTCCCTTGGGGCCTAAGACGCTATGCAATGCTTGCGGGTGTGAGGTTCAAGTCTGGCANGCTGCTGCCGGAATANAGGCCTGGCTAATANTCCAACTTTTATGGAGTGGACATACACTCCAATTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BI796504             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATGTGAA TGATGAGCTGC TATCGGA GGAGCCTA TGAAGAGGTGCACCCATTGCTTGTCCTACAAGACGCCACA T GGAGGACCGGTCCCTTGGGGCCTAAGACGCTATGCAATGCTT C GGTGTGAGGTTCAAGTCTGGCAGGCTGCTGCCGGAATACAGGCCT GCTAATAGTCCAACTTTTGT GAGT GACATACACTCCAATTCTCATAAGAAGGTCATGCAGCTGAGGAATTCTGTTCCACACCCAAGGAAGTGAACTGGTGGTCGGGAACGTCTCGATCTGTTGCGTTTAGTTTTAGGAACTCTTCAGTTGTAGAAGTAAGCTGATAGTGAAGAACATCTTAATCTGTCTCATTGAATTTTAGGCGGGCTCCTTGGTCGTAGAAGTGAGCTGATGATCACATCTCAATCTGCTGCATTGAGCTTTTAGGGGCTCTCAGCCTTAGATGCTGAGAAAACGAAAGCAGAATCTAGTTAGGCGTCATGAACTCTTTGTTAGCTCTAGCCGTTTTTTAACTTGAGAAATTAATCTGCTAaaaaa                                                                                                                           ]
[-] EMBL CF278411             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CGGAATACAGGCCT GCTAATAGTCCAACTTTTGT GAGT GACATACACTCCAATTCTCATAAGAAGGTCATGCAGCTGAGGAATTCTGTTCCACACCCAAGGAAGTGAACTGGTGGTCGGGAACGTCTCGATCTGTTGCGTTTAGTTTTAGGAACTCTTCAGTTGTAGAAGTAAGCTGATAGTGAAGAACATCTTAATCTGTCTCATTGAATTTTAGGCGGGCTCCTTGGTCGTAGAAGTGAGCTGATAATCACATCTCAATCTGCTGCATTGAGCTTTTAGGGGCTCTCAGCCTTAGATGCTGAGAAAACGAAAGCAGAATCTAGTTAGGCGTCATGAACTCTTTGTTAGCTCTAGCCGTTTTTTAACTTGAGAAATTAATATGCTAGTTG TGGAGATCAaaa                                                                                                               ]


>consensus_12910#0 CTACCCCCTCTTCTTCCTCCGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCC TCAACCGTGCGGCTGCCTCCTCCTCGTCGCTGGGCATGGATGTGCACCCGCCGAATGCGG CCGCCTCCTCGCTGGAGGAGTTGTTCCCGCACCAGCCCGCCACGGAAAGTGATAGAAGTG GCATAGAGTGGCTCTCTGTCTATGTAGAGGACTGCTTGTCAACCTCTGCATCCTGCACAA ACCCTGTCTCTGCAGAACTACCGCCTATTACAATGGCAAGTCAAGGTGCTGCAAAACCAA AGTTACCACCACGCTCATCTACCAATGCAAGAAAAAAGAAAAGGAGCCTGGCATCTGTCA TAAGCGACACTGATGACCAACATTGTATCACGCTGTTTGTCGAGCCACCGCTACTCCTGC TCGATCATAAGGACTGGCTAGCAGAGAGTGAGCTTATCCTCCCCAAGAAGGACAAAGATG AAGAACTTGTCCAAGAGCAAGAACAAGAGGAGGAAGAGAATTACAAAATGAGTGCAGGAA TGCAATTCCAGCAGGAGCAACTGGTGATCACTTGTAGCTATTGTTTGTCCAGCCAATCAC CACAGTGGTGGGATGGTCCATCAGGGCCTACCTGCGATGCTTGTCGTCTGAGGATTGAGG CGAGGAATGGGCACACCACCAGTTCCAAGAAGCGCTATGGCCAAGAGATTGACAAAGAAC AGGACATAGGAAAGCGGCGAGATAAGAAGAAGATCAAGAAGGCTGTTTATGTGAATGATG AGCTGCTATCGGAGGAGCCAATGAAGAGGTGCACCCATTGCTTGTCCTACAAGACGCCAC AGTGGAGGACCGGTCCCTTGGGGCCTAAGACGCTATGCAATGCTTGCGGTGTGAGGTTCA AGTCTGGCAGGCTGCTGCCGGAATACAGGCCTGCTAATAGTCCAACTTTTGTGAGTGACA TACACTCCAATTCTCATAAGAAGGTCATGCAGCTGAGGAATTCTGTTCCACACCCAAGGA AGTGAACTGGTGGTCGGGAACGTCTCGATCTGTTGCGTTTAGTTTTAGGAACTCTTCAGT TGTAGAAGTAAGCTGATAGTGAAGAACATCTTAATCTGTCTCATTGAATTTTAGGCGGGC TCCTTGGTCGTAGAAGTGAGCTGATAATCACATCTCAATCTGCTGCATTGAGCTTTTAGG GGCTCTCAGCCTTAGATGCTGAGAAAACGAAAGCAGAATCTAGTTAGGCGTCATGAACTC TTTGTTAGCTCTAGCCGTTTTTTAACTTGAGAAATTAATCTGCTAGTTGATGGAGATCAT CAGTTTAATACCAATGGGTGGTTGCTACCCTTGTTATCCCACCATTGTCTTGCAGCATGC TTGTTCTGTGATACTCGCTGAATATGTTTGCAAGATGGAAATCAGAATTCAGA



consensusID : consensus_12910#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 700
fasta sequence
                              [AGCGCTATGGCCAAGAGATTGACAAAGACCAGGACATAGGAAAGCGGCGAGATAAGAAGAAGATCAAGAAGGCTGTTTATGTGAATGATGAGCTGCTATCGGAGGAGCCAATGAAGAGGTGCACCCATTGCTTGTCCTACAAGACGCCACAGTGGAGGACCGGTCCCTTGGGGCCTAAGACGCTATGCAATGCTTGCGGTGTGAGGTTCAAGTCTGGCAGGCTGCTGCCGGAATACAGGCCTGCTAATAGTCCAACTTTTGTGAGTGACATACACTCCAATTCTCATAAGAAGGTCATGCAGCTGAGGAATTCTGTTCCACACCCAAGGAAGTGAACTGGTGGTCGGGAACGTCTCGATCTGTTGCGTTTAGTTTTAGGAACTCTTCAGTTGTAGAAGTAAGCTGATAGTGAAGAACATCTTAATCTGTCTCATTGAATTTTAGGCGGGCTCCTTGGTCGTAGAAGTGAGCTGATAATCACATCTCAATCTGCTGCATTGAGCTTTTAGGGGCTCTCAGCCTTAGATGCTGAGAAAACGAAAGCAGAATCTAGTTAGGGGTCATGAACTCTTTGTTAGCTCTAGCCGTTTTTTAACTTGAGAAATTAATCTGCTAGTTGTTGGAGATCATCAGTTTAATACCAATGGGTGGTTGCTCCCTAGGTTATCCCACCATTGTCTTGCAAAAATCAAGAATATAA]

[-] EMBL CB642003             [AGCGCTATGGCCAAGAGATTGACAAAGACCAGGACATAGGAAAGCGGCGAGATAAGAAGAAGATCAAGAAGGCTGTTTATGTGAATGATGAGCTGCTATCGGAGGAGCCAATGAAGAGGTGCACCCATTGCTTGTCCTACAAGACGCCACAGTGGAGGACCGGTCCCTTGGGGCCTAAGACGCTATGCAATGCTTGCGGTGTGAGGTTCAAGTCTGGCAGGCTGCTGCCGGAATACAGGCCTGCTAATAGTCCAACTTTTGTGAGTGACATACACTCCAATTCTCATAAGAAGGTCATGCAGCTGAGGAATTCTGTTCCACACCCAAGGAAGTGAACTGGTGGTCGGGAACGTCTCGATCTGTTGCGTTTAGTTTTAGGAACTCTTCAGTTGTAGAAGTAAGCTGATAGTGAAGAACATCTTAATCTGTCTCATTGAATTTTAGGCGGGCTCCTTGGTCGTAGAAGTGAGCTGATAATCACATCTCAATCTGCTGCATTGAGCTTTTAGGGGCTCTCAGCCTTAGATGCTGAGAAAACGAAAGCAGAATCTAGTTAGGGGTCATGAACTCTTTGTTAGCTCTAGCCGTTTTTTAACTTGAGAAATTAATCTGCTAGTTGTTGGAGATCATCAGTTTAATACCAATGGGTGGTTGCTCCCTAGGTTATCCCACCATTGTCTTGCAAAAATCAAGAATATAA]


>consensus_12910#1 AGCGCTATGGCCAAGAGATTGACAAAGACCAGGACATAGGAAAGCGGCGAGATAAGAAGA AGATCAAGAAGGCTGTTTATGTGAATGATGAGCTGCTATCGGAGGAGCCAATGAAGAGGT GCACCCATTGCTTGTCCTACAAGACGCCACAGTGGAGGACCGGTCCCTTGGGGCCTAAGA CGCTATGCAATGCTTGCGGTGTGAGGTTCAAGTCTGGCAGGCTGCTGCCGGAATACAGGC CTGCTAATAGTCCAACTTTTGTGAGTGACATACACTCCAATTCTCATAAGAAGGTCATGC AGCTGAGGAATTCTGTTCCACACCCAAGGAAGTGAACTGGTGGTCGGGAACGTCTCGATC TGTTGCGTTTAGTTTTAGGAACTCTTCAGTTGTAGAAGTAAGCTGATAGTGAAGAACATC TTAATCTGTCTCATTGAATTTTAGGCGGGCTCCTTGGTCGTAGAAGTGAGCTGATAATCA CATCTCAATCTGCTGCATTGAGCTTTTAGGGGCTCTCAGCCTTAGATGCTGAGAAAACGA AAGCAGAATCTAGTTAGGGGTCATGAACTCTTTGTTAGCTCTAGCCGTTTTTTAACTTGA GAAATTAATCTGCTAGTTGTTGGAGATCATCAGTTTAATACCAATGGGTGGTTGCTCCCT AGGTTATCCCACCATTGTCTTGCAAAAATCAAGAATATAA



consensusID : consensus_12910#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 376
fasta sequence
                              [GGAATTCTGTTCCACACCCAAGGAAGTGAACTGGTGGTCGGGAACGTCTCGATCTGTTGCGTTTAGTTTTAGGAACTCTTCAGTTGTAGAAGTAAGCTGATAGTGAAGAACATCTTAATCTGTCTCATTGAATTTTAGGCGGGCTCCTTGGTCGTAGAAGTGAGCTGATAATCACATCTCAATCTGCTGCATTGAGCTTTTAGGGGCTCTCAGCCTTAGATGCTGAGAAAACGAAAGCAGAATCTAGTTAGGCGTCATGAACTCTTTGTTAGCTCTAGCCGTTTTTTAACTTGAGAAATTAATCTGCTAGTTGTTGGAGATCATCAGTTTAATACCAATGGGTGGTTGCTACCTTTGTTATCCAAAAAAAAAAAAA]

[+] EMBL AU075447             [GGAATTCTGTTCCACACCCAAGGAAGTGAACTGGTGGTCGGGAACGTCTCGATCTGTTGCGTTTAGTTTTAGGAACTCTTCAGTTGTAGAAGTAAGCTGATAGTGAAGAACATCTTAATCTGTCTCATTGAATTTTAGGCGGGCTCCTTGGTCGTAGAAGTGAGCTGATAATCACATCTCAATCTGCTGCATTGAGCTTTTAGGGGCTCTCAGCCTTAGATGCTGAGAAAACGAAAGCAGAATCTAGTTAGGCGTCATGAACTCTTTGTTAGCTCTAGCCGTTTTTTAACTTGAGAAATTAATCTGCTAGTTGTTGGAGATCATCAGTTTAATACCAATGGGTGGTTGCTACCTTTGTTATCCAAAAAAAAAAAAA]


>consensus_12910#2 GGAATTCTGTTCCACACCCAAGGAAGTGAACTGGTGGTCGGGAACGTCTCGATCTGTTGC GTTTAGTTTTAGGAACTCTTCAGTTGTAGAAGTAAGCTGATAGTGAAGAACATCTTAATC TGTCTCATTGAATTTTAGGCGGGCTCCTTGGTCGTAGAAGTGAGCTGATAATCACATCTC AATCTGCTGCATTGAGCTTTTAGGGGCTCTCAGCCTTAGATGCTGAGAAAACGAAAGCAG AATCTAGTTAGGCGTCATGAACTCTTTGTTAGCTCTAGCCGTTTTTTAACTTGAGAAATT AATCTGCTAGTTGTTGGAGATCATCAGTTTAATACCAATGGGTGGTTGCTACCTTTGTTA TCCAAAAAAAAAAAAA



consensusID : consensus_12910#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 252
fasta sequence
                              [CACATCTCAATCTGCTGCNTTGAGCTTTTAGGGGCTCTCAGCCTTAGATGCTGAGAAAACGAAAGCAGAATCTAGTTAGGCGTCATGAACNCTTTGTTAGCTCTANCCGTTTTTTAACTTGAGAAATTAANCTGCTAGTTGTTGGAGANCANNAGTTTAATACCAATGGGTGGTTGCTNCCTTTGTTATCCCACCATTGTCTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C97062               [CACATCTCAATCTGCTGCNTTGAGCTTTTAGGGGCTCTCAGCCTTAGATGCTGAGAAAACGAAAGCAGAATCTAGTTAGGCGTCATGAACNCTTTGTTAGCTCTANCCGTTTTTTAACTTGAGAAATTAANCTGCTAGTTGTTGGAGANCANNAGTTTAATACCAATGGGTGGTTGCTNCCTTTGTTATCCCACCATTGTCTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_12910#3 CACATCTCAATCTGCTGCNTTGAGCTTTTAGGGGCTCTCAGCCTTAGATGCTGAGAAAAC GAAAGCAGAATCTAGTTAGGCGTCATGAACNCTTTGTTAGCTCTANCCGTTTTTTAACTT GAGAAATTAANCTGCTAGTTGTTGGAGANCANNAGTTTAATACCAATGGGTGGTTGCTNC CTTTGTTATCCCACCATTGTCTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12910#0      CTACCCCCTCTTCTTCCTCCGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCC 60
consensus_12910#2      ------------------------------------------------------------
consensus_12910#1      ------------------------------------------------------------
consensus_12910#3      ------------------------------------------------------------
                                                                                   

consensus_12910#0      TCAACCGTGCGGCTGCCTCCTCCTCGTCGCTGGGCATGGATGTGCACCCGCCGAATGCGG 120
consensus_12910#2      ------------------------------------------------------------
consensus_12910#1      ------------------------------------------------------------
consensus_12910#3      ------------------------------------------------------------
                                                                                   

consensus_12910#0      CCGCCTCCTCGCTGGAGGAGTTGTTCCCGCACCAGCCCGCCACGGAAAGTGATAGAAGTG 180
consensus_12910#2      ------------------------------------------------------------
consensus_12910#1      ------------------------------------------------------------
consensus_12910#3      ------------------------------------------------------------
                                                                                   

consensus_12910#0      GCATAGAGTGGCTCTCTGTCTATGTAGAGGACTGCTTGTCAACCTCTGCATCCTGCACAA 240
consensus_12910#2      ------------------------------------------------------------
consensus_12910#1      ------------------------------------------------------------
consensus_12910#3      ------------------------------------------------------------
                                                                                   

consensus_12910#0      ACCCTGTCTCTGCAGAACTACCGCCTATTACAATGGCAAGTCAAGGTGCTGCAAAACCAA 300
consensus_12910#2      ------------------------------------------------------------
consensus_12910#1      ------------------------------------------------------------
consensus_12910#3      ------------------------------------------------------------
                                                                                   

consensus_12910#0      AGTTACCACCACGCTCATCTACCAATGCAAGAAAAAAGAAAAGGAGCCTGGCATCTGTCA 360
consensus_12910#2      ------------------------------------------------------------
consensus_12910#1      ------------------------------------------------------------
consensus_12910#3      ------------------------------------------------------------
                                                                                   

consensus_12910#0      TAAGCGACACTGATGACCAACATTGTATCACGCTGTTTGTCGAGCCACCGCTACTCCTGC 420
consensus_12910#2      ------------------------------------------------------------
consensus_12910#1      ------------------------------------------------------------
consensus_12910#3      ------------------------------------------------------------
                                                                                   

consensus_12910#0      TCGATCATAAGGACTGGCTAGCAGAGAGTGAGCTTATCCTCCCCAAGAAGGACAAAGATG 480
consensus_12910#2      ------------------------------------------------------------
consensus_12910#1      ------------------------------------------------------------
consensus_12910#3      ------------------------------------------------------------
                                                                                   

consensus_12910#0      AAGAACTTGTCCAAGAGCAAGAACAAGAGGAGGAAGAGAATTACAAAATGAGTGCAGGAA 540
consensus_12910#2      ------------------------------------------------------------
consensus_12910#1      ------------------------------------------------------------
consensus_12910#3      ------------------------------------------------------------
                                                                                   

consensus_12910#0      TGCAATTCCAGCAGGAGCAACTGGTGATCACTTGTAGCTATTGTTTGTCCAGCCAATCAC 600
consensus_12910#2      ------------------------------------------------------------
consensus_12910#1      ------------------------------------------------------------
consensus_12910#3      ------------------------------------------------------------
                                                                                   

consensus_12910#0      CACAGTGGTGGGATGGTCCATCAGGGCCTACCTGCGATGCTTGTCGTCTGAGGATTGAGG 660
consensus_12910#2      ------------------------------------------------------------
consensus_12910#1      ------------------------------------------------------------
consensus_12910#3      ------------------------------------------------------------
                                                                                   

consensus_12910#0      CGAGGAATGGGCACACCACCAGTTCCAAGAAGCGCTATGGCCAAGAGATTGACAAAGAAC 720
consensus_12910#2      ------------------------------------------------------------
consensus_12910#1      ------------------------------AGCGCTATGGCCAAGAGATTGACAAAGACC 30
consensus_12910#3      ------------------------------------------------------------
                                                                                   

consensus_12910#0      AGGACATAGGAAAGCGGCGAGATAAGAAGAAGATCAAGAAGGCTGTTTATGTGAATGATG 780
consensus_12910#2      ------------------------------------------------------------
consensus_12910#1      AGGACATAGGAAAGCGGCGAGATAAGAAGAAGATCAAGAAGGCTGTTTATGTGAATGATG 90
consensus_12910#3      ------------------------------------------------------------
                                                                                   

consensus_12910#0      AGCTGCTATCGGAGGAGCCAATGAAGAGGTGCACCCATTGCTTGTCCTACAAGACGCCAC 840
consensus_12910#2      ------------------------------------------------------------
consensus_12910#1      AGCTGCTATCGGAGGAGCCAATGAAGAGGTGCACCCATTGCTTGTCCTACAAGACGCCAC 150
consensus_12910#3      ------------------------------------------------------------
                                                                                   

consensus_12910#0      AGTGGAGGACCGGTCCCTTGGGGCCTAAGACGCTATGCAATGCTTGCGGTGTGAGGTTCA 900
consensus_12910#2      ------------------------------------------------------------
consensus_12910#1      AGTGGAGGACCGGTCCCTTGGGGCCTAAGACGCTATGCAATGCTTGCGGTGTGAGGTTCA 210
consensus_12910#3      ------------------------------------------------------------
                                                                                   

consensus_12910#0      AGTCTGGCAGGCTGCTGCCGGAATACAGGCCTGCTAATAGTCCAACTTTTGTGAGTGACA 960
consensus_12910#2      ------------------------------------------------------------
consensus_12910#1      AGTCTGGCAGGCTGCTGCCGGAATACAGGCCTGCTAATAGTCCAACTTTTGTGAGTGACA 270
consensus_12910#3      ------------------------------------------------------------
                                                                                   

consensus_12910#0      TACACTCCAATTCTCATAAGAAGGTCATGCAGCTGAGGAATTCTGTTCCACACCCAAGGA 1020
consensus_12910#2      ------------------------------------GGAATTCTGTTCCACACCCAAGGA 24
consensus_12910#1      TACACTCCAATTCTCATAAGAAGGTCATGCAGCTGAGGAATTCTGTTCCACACCCAAGGA 330
consensus_12910#3      ------------------------------------------------------------
                                                                                   

consensus_12910#0      AGTGAACTGGTGGTCGGGAACGTCTCGATCTGTTGCGTTTAGTTTTAGGAACTCTTCAGT 1080
consensus_12910#2      AGTGAACTGGTGGTCGGGAACGTCTCGATCTGTTGCGTTTAGTTTTAGGAACTCTTCAGT 84
consensus_12910#1      AGTGAACTGGTGGTCGGGAACGTCTCGATCTGTTGCGTTTAGTTTTAGGAACTCTTCAGT 390
consensus_12910#3      ------------------------------------------------------------
                                                                                   

consensus_12910#0      TGTAGAAGTAAGCTGATAGTGAAGAACATCTTAATCTGTCTCATTGAATTTTAGGCGGGC 1140
consensus_12910#2      TGTAGAAGTAAGCTGATAGTGAAGAACATCTTAATCTGTCTCATTGAATTTTAGGCGGGC 144
consensus_12910#1      TGTAGAAGTAAGCTGATAGTGAAGAACATCTTAATCTGTCTCATTGAATTTTAGGCGGGC 450
consensus_12910#3      ------------------------------------------------------------
                                                                                   

consensus_12910#0      TCCTTGGTCGTAGAAGTGAGCTGATAATCACATCTCAATCTGCTGCATTGAGCTTTTAGG 1200
consensus_12910#2      TCCTTGGTCGTAGAAGTGAGCTGATAATCACATCTCAATCTGCTGCATTGAGCTTTTAGG 204
consensus_12910#1      TCCTTGGTCGTAGAAGTGAGCTGATAATCACATCTCAATCTGCTGCATTGAGCTTTTAGG 510
consensus_12910#3      ----------------------------CACATCTCAATCTGCTGCNTTGAGCTTTTAGG 32
                                                   ****************** *************

consensus_12910#0      GGCTCTCAGCCTTAGATGCTGAGAAAACGAAAGCAGAATCTAGTTAGGCGTCATGAACTC 1260
consensus_12910#2      GGCTCTCAGCCTTAGATGCTGAGAAAACGAAAGCAGAATCTAGTTAGGCGTCATGAACTC 264
consensus_12910#1      GGCTCTCAGCCTTAGATGCTGAGAAAACGAAAGCAGAATCTAGTTAGGGGTCATGAACTC 570
consensus_12910#3      GGCTCTCAGCCTTAGATGCTGAGAAAACGAAAGCAGAATCTAGTTAGGCGTCATGAACNC 92
                       ************************************************ ********* *

consensus_12910#0      TTTGTTAGCTCTAGCCGTTTTTTAACTTGAGAAATTAATCTGCTAGTTGATGGAGATCAT 1320
consensus_12910#2      TTTGTTAGCTCTAGCCGTTTTTTAACTTGAGAAATTAATCTGCTAGTTGTTGGAGATCAT 324
consensus_12910#1      TTTGTTAGCTCTAGCCGTTTTTTAACTTGAGAAATTAATCTGCTAGTTGTTGGAGATCAT 630
consensus_12910#3      TTTGTTAGCTCTANCCGTTTTTTAACTTGAGAAATTAANCTGCTAGTTGTTGGAGANCAN 152
                       ************* ************************ ********** ****** ** 

consensus_12910#0      CAGTTTAATACCAATGGGTGGTTGCTACCCTTGTTATCCCACCATTGTCTTGCAGCATGC 1380
consensus_12910#2      CAGTTTAATACCAATGGGTGGTTGCTACCTTTGTTATCCAAAAAAAAAAAAA-------- 376
consensus_12910#1      CAGTTTAATACCAATGGGTGGTTGCTCCCTAGGTTATCCCACCATTGTCTTGCAAAAATC 690
consensus_12910#3      NAGTTTAATACCAATGGGTGGTTGCTNCCTTTGTTATCCCACCATTGTCTTGCAAAAAAA 212
                        ************************* **   ******* *  *                

consensus_12910#0      TTGTTCTGTGATACTCGCTGAATATGTTTGCAAGATGGAAATCAGAATTCAGA 1433
consensus_12910#2      -----------------------------------------------------
consensus_12910#1      AAGAATATAA------------------------------------------- 700
consensus_12910#3      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------- 252
                                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)