These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12916#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 747 fasta sequence [TACTACTAAGCATTTGGCTCTTGCCATCCTTGTCCTCCTTAGCATTGGTATGACCACCAGTGCAAGAACCCTCCTAGGTTATGGCCCCGGAGGAGGAGGTGGAGGTGGTGGTGGTGGTGAAGGAGGCGGTGGTGGTTACGGTGGATCGGGCTATGGTTCTGGTTCTGGGTATGGTGAGGGAGGTGGCTCCGGCTCTGGCTATGGGTCTGGGCAAGGCTCTGGCTATGGTGCAGGTGTTGGTGGTGCTGGCGGGTATGGTAGTGGTGGCGGAGGTGGTGGTGGCCAAGGTGGTGGTGCTGGCGGCTACGGGCAAGGGTCT-GGCTATGGTT-CCGGCTATGGGTCGGGTGCTGGTGGTGCTCATGGTGGTGGTTATGGAAGTGGTGGCGGTGGCGGTGGCGGTGGAGGCCAAGGTGGAGGCTCCGGCTCTGGCTCTGGCTCTGGATATGGCTCTGGCTCTGGCGGAGGCAACGGACACCACTAAGCTCATTTCCTCTATCAGCTAGCTACAATATAGCCTGTTGTTATAAGTGAACCG-TGATCAGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCTTTTGTACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--AAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG] [+] EMBL OSC13321 [TACTACTAAGCATTTGGCTCTTGCCATCCTTGTCCTCCTTAGCATTGGTATGACCACCAGTGCAAGAACCCTCCTAGGTTATGGCCCCGGAGGAGGAGGTGGAGGTGGTGGTGGTGGTGAAGGAGGCGGTGGTGGTTACGGTGGATCGGGCTATGGTTCTGGTTCTGGGTATGGTGAGGGAGGTGGCTCCGGCTCTGGCTATGGGTCTGGGCAAGGCTCTGGCTATGGTGCAGGTGTTGGTGGTGCTGGCGGGTATGGTAGTGGTGGCGGAGGTGGTGGTGGCCAAGGTGGTGGTGCTGGCGGCTACGGGCAAGGGTCT GGCTATGGTT CCGGCTATGGGTCGGGTGCTGGTGGTGCTCATGGTGGTGGTTATGGAAGTGGTGGCGGTGGCGGTGGCGGTGGAGGCCAAGGTGGAGGCTCCGGCTCTGGCTCTGGCTCTGGATATGGCTCTGGCTCTGGCGGAGGCAACGGACACCACTAAGCTCATTTCCTCTATCAGCTAGCTACAATATAGCCTGTTGTTATAAGTGAACCG TGATCAGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAG CTAGTAAATAAAACGACCTTTTGTACT ] [-] EMBL CF321847 [ CGGCTCTGGCTATGGGTCTGGGCAAGGCTCTGGCTATGGTGCAGGTGTTGGTGGTGCTGGCGGGTATGGTAGTGGTGGCGGAGGTGGTGGTGGCCAAGGTGGTGGTGCTGGCGGCTACGGGCAAGGGTCT GGCTATGGTT CCGGCTATGGGTCGGGTGCTGGTGGTGCTCATGGTGGTGGTTATGGAAGTGGTGGCGGTGGCGGTGGCGGTGGAGGCCAAGGTGGAGGCTCCGGCTCTGGCTCTGGCTCTGGATATGGCTCTGGCTCTGGCGGAGGCAACGGACACCACTAAGCTCATTTCCTCTATCAGCTAGCTACAATATAGCCTGTTGTTATAAGTG ACCGATGATCAGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCTTTTGTACTCAGATCAAAAAAAAAAAAAAAAAAcactg ] [+] EMBL AU223453 [ anTGGTGGCGGAGGTGGTGGTGGCCAAGGTGGTGGTGCTGGCGGCTACGGGCAAGGGTCT GGCTATGGTT CCGGCTATGGGTCGGGTGCTGGTGGTGCTCATGGTGGTGGTTATGGAANTGGTGGCGGTGGCGGTGGCGGTGGAGGCCAAGGTGGAGGCTCCGGCTCTGGCTCTGGCTNTGGATATGGCTCTGGCTNTGGCGGAGGCAACGGACNCCNCTAAGCTCATTTCCTCTATCAGCTAGCTACAATATAGCCTGTTGTTATAAGTGAACCG TGATCAGTGATGAGTCTCTCTCGCTGCTTTACAAANAGCTTGTCGGATTGTATCGATATAGCNCTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCTTTTGTTCTCNAAAAAAAAAAAAAAAA ] [+] EMBL AU100838 [ CTGCCGGCTACGGCCAA GGTCTGGGCTATGGTTCCCGGCTATGGGTCGGGTGCTGGTGGTGCTCATGGTGGTGGTTATGGAAGTGGTGCCGGTGGCGGTGGCGGTGGAGGCCAAGGTGGAGGCTCCGGCTCTGGCTCTGGCTCTGGATATGGCTCTGGCTCTGGCGGAGGCAACGGACACCACTAAGCTCATTTCCTCTATCAGCTAGCTACAATATAGCCTGTTGTTATAAGTGAACCG TGATCAGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCTTTTGTACTCAAAAAAAAAAAAAAAAAACAAAAAAAAA ] [+] EMBL AU161989 [ CTAGCTACAATATAGCCTGTTGTTATAAGTGAACCG TGATCAGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCTTTTGTACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAANGNAAAAAAAAAAAAA ] [+] EMBL CF318480 [ ATATAGCCTGTTGTTATAAGTGAACCG TGATCAGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCTTTTGTACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG] [+] EMBL CF315128 [ CTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCTTTTGTACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAA ] consensusID : consensus_12916#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [GGCAAGGCTCTGGCTATGGTGCAGGTGTTGGTGGTGCTGGCGGGTATGGTAGTGGTGCCGNAGGTGGTGGTGGCCAAGGTGGTGGTGCTGGCGGCTACGGGCAAGGGTCTGGCTATGGTTCCGGCTATGGGTCGGGTGCTGGTGGTGCTCATGGTGGTGGTTATGGAAGTGGTGGCGGTGGCGGTGNCGGTGGAGGCCAAGGTGGAGGCTCCGGCTCTGGCTCTGGCTCTGGATATGGCTCTGGCTCTGGCGGAGGCAACGGACACCACTAAGCTCATTTCCTCTATCAGCTAGCTACAATATAGCCTGTTGTTATAAGTGAACCGTGATCAGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACAACCTTTTGTACTCAAAAAAAAAAAAAAAAAAAAATACTGTCATG] [-] EMBL CF321154 [GGCAAGGCTCTGGCTATGGTGCAGGTGTTGGTGGTGCTGGCGGGTATGGTAGTGGTGCCGNAGGTGGTGGTGGCCAAGGTGGTGGTGCTGGCGGCTACGGGCAAGGGTCTGGCTATGGTTCCGGCTATGGGTCGGGTGCTGGTGGTGCTCATGGTGGTGGTTATGGAAGTGGTGGCGGTGGCGGTGNCGGTGGAGGCCAAGGTGGAGGCTCCGGCTCTGGCTCTGGCTCTGGATATGGCTCTGGCTCTGGCGGAGGCAACGGACACCACTAAGCTCATTTCCTCTATCAGCTAGCTACAATATAGCCTGTTGTTATAAGTGAACCGTGATCAGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACAACCTTTTGTACTCAAAAAAAAAAAAAAAAAAAAATACTGTCATG] consensusID : consensus_12916#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 251 fasta sequence [TCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCTTTTGTACTCAAA--AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTGAAATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGGGGCCGGGCCC] [+] EMBL CF318280 [TCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCTTTTGTACTCAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTGAAATGCAAAA ] [+] EMBL CF306768 [ TCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCTTTTGTACTCAGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGGGGCCGGGCCC] consensusID : consensus_12916#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence [GATCAGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCTTTTGTACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG] [+] EMBL CF316469 [GATCAGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACTGTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCTTTTGTACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12916#2 ------------------------------------------------------------ consensus_12916#3 ------------------------------------------------------------ consensus_12916#0 TACTACTAAGCATTTGGCTCTTGCCATCCTTGTCCTCCTTAGCATTGGTATGACCACCAG 60 consensus_12916#1 ------------------------------------------------------------ consensus_12916#2 ------------------------------------------------------------ consensus_12916#3 ------------------------------------------------------------ consensus_12916#0 TGCAAGAACCCTCCTAGGTTATGGCCCCGGAGGAGGAGGTGGAGGTGGTGGTGGTGGTGA 120 consensus_12916#1 ------------------------------------------------------------ consensus_12916#2 ------------------------------------------------------------ consensus_12916#3 ------------------------------------------------------------ consensus_12916#0 AGGAGGCGGTGGTGGTTACGGTGGATCGGGCTATGGTTCTGGTTCTGGGTATGGTGAGGG 180 consensus_12916#1 ------------------------------------------------------------ consensus_12916#2 ------------------------------------------------------------ consensus_12916#3 ------------------------------------------------------------ consensus_12916#0 AGGTGGCTCCGGCTCTGGCTATGGGTCTGGGCAAGGCTCTGGCTATGGTGCAGGTGTTGG 240 consensus_12916#1 -----------------------------GGCAAGGCTCTGGCTATGGTGCAGGTGTTGG 31 consensus_12916#2 ------------------------------------------------------------ consensus_12916#3 ------------------------------------------------------------ consensus_12916#0 TGGTGCTGGCGGGTATGGTAGTGGTGGCGGAGGTGGTGGTGGCCAAGGTGGTGGTGCTGG 300 consensus_12916#1 TGGTGCTGGCGGGTATGGTAGTGGTGCCGNAGGTGGTGGTGGCCAAGGTGGTGGTGCTGG 91 consensus_12916#2 ------------------------------------------------------------ consensus_12916#3 ------------------------------------------------------------ consensus_12916#0 CGGCTACGGGCAAGGGTCTGGCTATGGTTCCGGCTATGGGTCGGGTGCTGGTGGTGCTCA 360 consensus_12916#1 CGGCTACGGGCAAGGGTCTGGCTATGGTTCCGGCTATGGGTCGGGTGCTGGTGGTGCTCA 151 consensus_12916#2 ------------------------------------------------------------ consensus_12916#3 ------------------------------------------------------------ consensus_12916#0 TGGTGGTGGTTATGGAAGTGGTGGCGGTGGCGGTGGCGGTGGAGGCCAAGGTGGAGGCTC 420 consensus_12916#1 TGGTGGTGGTTATGGAAGTGGTGGCGGTGGCGGTGNCGGTGGAGGCCAAGGTGGAGGCTC 211 consensus_12916#2 ------------------------------------------------------------ consensus_12916#3 ------------------------------------------------------------ consensus_12916#0 CGGCTCTGGCTCTGGCTCTGGATATGGCTCTGGCTCTGGCGGAGGCAACGGACACCACTA 480 consensus_12916#1 CGGCTCTGGCTCTGGCTCTGGATATGGCTCTGGCTCTGGCGGAGGCAACGGACACCACTA 271 consensus_12916#2 ------------------------------------------------------------ consensus_12916#3 --------------------------------------------------------GATC 4 consensus_12916#0 AGCTCATTTCCTCTATCAGCTAGCTACAATATAGCCTGTTGTTATAAGTGAACCGTGATC 540 consensus_12916#1 AGCTCATTTCCTCTATCAGCTAGCTACAATATAGCCTGTTGTTATAAGTGAACCGTGATC 331 consensus_12916#2 -----------TCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACT 49 consensus_12916#3 AGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACT 64 consensus_12916#0 AGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACT 600 consensus_12916#1 AGTGATGAGTCTCTCTCGCTGCTTTACAAAGAGCTTGTCGGATTGTATCGATATAGCACT 391 ************************************************* consensus_12916#2 GTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCT 109 consensus_12916#3 GTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCT 124 consensus_12916#0 GTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACGACCT 660 consensus_12916#1 GTGTACTGGCTTGCCGTTTCATCACATAAAGTTGGCAAAGCCTAGTAAATAAAACAACCT 451 ******************************************************* **** consensus_12916#2 TTTGTACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 169 consensus_12916#3 TTTGTACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 184 consensus_12916#0 TTTGTACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 720 consensus_12916#1 TTTGTACTCAAAAAAAAAAAAAAAAAAAAATACTGTCATG-------------------- 491 ****************************** * * consensus_12916#2 AAAAAAAACTGAAATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 229 consensus_12916#3 AAACCC--CTGTCATGCCG----------------------------------------- 201 consensus_12916#0 AAAAAAAAAAAAACCCCTGTCATGCCG--------------------------------- 747 consensus_12916#1 ------------------------------------------------------------ consensus_12916#2 CCCCGGGGGGGGGGCCGGGCCC 251 consensus_12916#3 ---------------------- consensus_12916#0 ---------------------- consensus_12916#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||