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Oryza sativa
cluster # 12944 cluster # 12944       Sequences # 11       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12944#0 length = 1483 sequences # 7  
consensus_12944#1 length = 757 sequences # 1  
consensus_12944#2 length = 555 sequences # 2  
consensus_12944#3 length = 541 sequences # 1  

consensusID : consensus_12944#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1483
fasta sequence
                              [TTTTTTGATTGATAAAGAAGTAT-CATCAAGACCCAGGAGCATCAGTTCAGCCCCAGTTATTACTATAGAGAGTACATACTCAGTTTTTGGGCAGATGACTGCAGATTCAG-AAATAAGTAATACACACTGAAGACGAG-ACGATATCATGATAATGAAAACAAGCAAAAAACCAAGACTAAACAGATGTCTTCTGTCCAGCCTTCTGGCAAGGACCTTAATATCTCTAAGAAGACTTAAACCAGTTGGTGTAGTGCCGACCCCAAATTCCTCTAGATGATAGACCAAACGATATCGATTGCTTCAGCGAGATACAAAAACAACCACAGGTTACATGATTTTGTACATGACAGATAACCTTCTCACGGTAAGACGGAAATATCTAAGGATAGGC-CAATGATCCGGAATGTGTGAAATCTCAACCACCTTTGGTGAAGAAAGTGAAAAAAAACTGT-CAGGCCAAGGCAGAGGGGC-ATGGACCAAATGCTGTGCCACATGCTATCCACTGCTTTT-TGCGGC-TGCATGGGAGCATGCAATCA-GGAACCTTCTGCCACTCCTTGTTCAAAA-GGTTGTATGTCACGAGGCGGTTCATCCGCTTCGCCTTCAAGGAGAGCATGAGCAAACCACTGTTGCCCAGGCATGTCATCTTCATGTGCTTACCGTAGAATTCTAAGCACCAGATATTTGGCATTCTGTCCACCTCCTTCCAGAGGAGAGTCATCTTCTGCAACTCCCAAATGCAGACACATGTCGCTGCATTTTTGCAGAGCAGACCCACCAGCATAACCCTTCCCTGGAACTCGGCAAGTGTGTGGTCAGTCAGATGAAGTGGCAGTGGGATGACGAATTGTCTCCATATCCCAGTGCTTACATCATACGACAAAACACCCTCTGGTTCTGCACACATGAAGTATAGCATGCTGCCAACCGCCACAGGCTGTGACCTAAAATTTAGAGCAAGCGGAAGTTTGATGCTTGGAGGAAAAGTGCCTGGACAAGACCACATATTGTTCATAGAATCATAGACTTCATAATTCCCATCATTTCCTAACCACATTACTTTGTAACCTTCATTAGAGGTTCCTCCGTTCATCACCATCCCTACTGCCACTCTTGA-CCATGCCTGGACTGACCTGCGCGGAATTTCCTTGAGTGATTGTGTTAGCGGATTGCATATGTAGAAGTTCCTGTGGCTAAGATCCAATAAACAGACAAGGCCACCTGCAGATGCCACTGGAATTACTATCTTTGCAGGAGCCAGGGGAAATGATGGGTGGTGCCATTTTTTCAGCGAAGGGTCATACATCGCTACATTGTTGCTGGCATTCTCATGGGTGATTGTATAGAAGCCATGGCAGCCTCTTGTGGAACTTCTGAGTACTGCTGAGAGAAACTTTCTGAGCCCAACATAGAATACCAATTCCGGCAAACAGTGCGAAATCGGAAAATTGCAGCAACTGGAAGTCTTGCAACAAGCGGTATGAAA]

[-] EMBL AU172317             [TTTTTTGATTGATAAAGAAGTAT CATCAAGACCCAGGAGCATCAGTTCAGCCCCAGTTATTACTATAGAGAGTACATACTCAGTTTTTGGGCAGATGACTGCAGATTCAGTAATTAAGTAATACACACTGAAGACGAGCACGATATCATGATAATGAAAACAAGCAAAAAACCAAGACTAAACAGATGTCTTCTGTCCAGCCTTCTGGCAAGGACCTTAATATCTCTAAGAAGACTTAAACCAGTTGGTGTAGTGCCGACCCCAAATTCCTCTAGATGATAGACCAAACGATATCGATTGCTTCAGCGAGATACAAAAACAACCACAGGTTACATGATTTTGTACATGACAGATAACCTTCTCACGGTAAGACGGAAATATCTAAGGATAGGC CAATGATCCGGAATGTGTGAAATCTCAACCACCTTTGGTGAAGAAAGTGAAAAAAAACTGT CAGGCCAAGGCAGAGGGGC ATGGACCAAATGCTGGGCCACATGCTATCCACTGCTTTT TGCGGC TGCATGGGAGCATGCAATCAGGGAACCTTCTGCCACTCCTTGTTCAAAAGGGTTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL BI799300             [  TTTT  TTGATAAAGAAGTAT CATCAAGACCCAGGAGCATCAGTTCAGCCCCAGTTATTACTATAGAGAGTACATACTCAGTTTTTGGGCAGATGACTGCAGATTCAG AAATAAGTAATACACACTGAAGACGAG ACGATATCATGATAATGAAAACAAGCAAAAAACCAAGACTAAACAGATGTCTTCTGTCCAGCCTTCTGGCAAGGACCTTAATATCTCTAAGAAGACTTAAACCAGTTGGTGTAGTGCCGACCCCAAATTCCTCTAGATGATAGACCAAACGATATCGATTGCTTCAGCGAGATACAAAAACAACCACAGGTTACATGATTTTGTACATGACAGATAACCTTCTCACGGTAAGACGGAAATATCTAAGGATAGGCGCAATGATCCGGAATGTGTGAAATCTCAACCACCTTTGGTGAAGAAAGTG AAAAAAACTGTGCAGG CAAGGGAGAGGGGCGATGGA CAAATGCTGTGCCACATGCTAT CACTGCTTTTATGCGGCGTGCATGGGAGCATGCAATCA G                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB654096             [               AGAAGTAT CATCAAGACCCAGGAGCATCAGTTCAGCCCCAGTTATTACTATAGAGAGTACATACTCAGTTTTTGGGCAGATGACTGCAGATTCAG AAATAAGTAATACACACTGAAGACGAG ACGATATCATGATAATGAAAACAAGCAAAAAACCAAGACTAAACAGATGTCTTCTGTCCAGCCTTCTGGCAAGGACCTTAATATCTCTAAGAAGACTTAAACCAGTTGGTGTAGTGCCGACCCCAAATTCCTCTAGATGATAGACCAAACGATATCGATTGCTTCAGCGAGATACAAAAACAACCACAGGTTACATGATTTTGTACATGACAGATAACCTTCTCACGGTAAGACGGAAATATCTAAGGATAGGC CAATGATCCGGAATGTGTGAAATCTCAACCACCTTTGGTGAAGAAAGTGAAAAAAAACTGT CAGGCCAAGGCAGAGGGGC ATGGACCAAATGCTGTGCCACATGCTATCCACTGCTTTT TGCGGC TGCATGGGAGCATGCAATCA GGAACCTTCTGCCACTCCTTGTTCAAAA GGTTGTATGTCACGAGGCGGTTCATCCGCTTCGCCTTCAAGGAGAGCATGAGCAAACCACTGTTGCCCAGGCATGTCATCTTCATGTGCTTACCGTAGAATTCTAAGCACCAGATATTTGGCATTCTGTCCACCTCCTTCCAGAGGAGAGTCATCTTCTGCAACTCCCAAATGCAGACACATGTCGCTGCATTTTTGCAGAGCAGACCCACCAGCATAACCCTTCCCTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB681173             [              tcttttTATGCATC AGACCCAGGAGCATCAGTTCAGCCCCCCTTA TACTATAGAGAGTACATACTCAGTTTTTGGGCAGATGACTGCAGATTCAG AAATAAGTAATACACACTGAAGACGAG ACGATATCATGATAATGAAAACAAGCAAAAAACCAAGACTAAACAGATGTCTTCTGTCCAGCCTTCTGGCAAGGACCTTAATATCTCTAAGAAGACTTAAACCAGTTGGTGTAGTGCCGACCCCAAATTCCTCTAGATGATAGACCAAACGATATCGATTGCTTCAGCGAGATACAAAAACAACCACAGGTTACATGATTTTGTACATGACAGATAACCTTCTCACGGTAAGACGGAAATATCTAAGGATAGGC CAATGATCCGGAATGTGTGAAATCTCAACCACCTTTGGTGAAGAAAGTGAAAAAAAACTGT CAGGCCAAGGCAGAGGGGC ATGGACCAAATGCTGTGCCACATGCTATCCACTGCTTTT TGCGGC TGCATGGGAGCATGCAATCA GGAACCTTCTGCCACTCCTTGTTCAAAA GGTTGTATGTCACGAGGCGGTTCATCCGCTTCGCCTTCAAGGAGAGCATGAGCAAACCACTGTTGCCCAGGCATGTCATCTTCATGTGCTTACCGTAGAATTCTAAGCACCAGATATTTGGCATTCTGTCCACCTCCTTCCAGAGGAGAGTCATCTTCTGCAACTCCCAAATGCAGACACATGTCGCTGCATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CA999130             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGAGCAAACCACTGTTGCCCAGGCATGTCATCTTCATGTGCTTACCGTAGAATTCTAAGCACCAGATATTTGGCATTCTGTCCACCTCCTTCCAGAGGAGAGTCATCTTCTGCAACTCCCAAATGCAGACACATGTCGCTGCATTTTTGCAGAGCAGACCCACCAGCATAACCCTTCCCTGGAACTCGGCAAGTGTGTGGTCAGTCAGATGAAGTGGCAGTGGGATGACGAATTGTCTCCATATCCCAGTGCTTACATCATACGACAAAACACCCTCTGGTTCTGCACACATGAAGTATAGCATGCTGCCAACCGCCACAGGCTGTGACCTAAAATTTAGAGCAAGCGGAAGTTTGATGCTTGGAGGAAAAGTGCCTGGACAAGACCACATATTCTTCATAGAATCATAGACTTCATAATTCCCATCATTTCCTAACCACATTACTTTGTAACCTTCATTAGAGGTTCCTCCGTTCATCACCATCCCTACTGCCACTCTTGACCCATGCCTGGACTGACCTGCGCGGAATTTCCTTGAGTGATTGTGTTAGCGGATTGCATATGTAGAAGTTCCTGTGGCTAAGATCCAATAAACAGACAAGGCCACCTGCAGATGCCACTGGAATTACTATCTTTGCAGGAGCCAGGGGAA                                                                                                                                                                                                                            ]
[-] EMBL CB681172             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAGATGAAGTGGCAGTGGGATGACGAATTGTCTCCATATCCCAGTGCTTACATCATACGACAAAACACCCTCTGGTTCTGCACACATGAAGTATAGCATGCTGCCAACCGCCACAGGCTGTGACCTAAAATTTAGAGCAAGCGGAAGTTTGATGCTTGGAGGAAAAGTGCCTGGACAAGACCACATATTGTTCATAGAATCATAGACTTCATAATTCCCATCATTTCCTAACCACATTACTTAGTAACCTTCATTAGAGGTTCCTCCGTTCATCACCATCCCTACTGCCACTGTTGA CCATGCCTGGACTGACCTGCGCGGAATTTCCTTGAGTGATTGTGTTAGCGGATTGCATATGTAGAAGTTCCTGTGGCTAAGATCCAATAAACAGACAAGGCCACCTGCAGATGCCACTGGAATTACTATCTTTGCAGGAGCCAGGGGAAATGATGGGTGGTGCCATTTTTTCAGCGAAGGGTCATACATCGCTACATTGTTGCTGGCATTCTCATGGGTGATTGTATAGAAGCCATGGCAGCCTCTTGTGGAACTTCTGAGTACTGCTGAGAGAAACTTTCTGAGCCCAACATAGAATACCAATTCCGGCAAACAGTGCGAAATCGGAAAATTGCAGCAACTGGAAGTCTTGCAACAAGCGGTATGAAA]
[-] EMBL CF197023             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AAGTTTGATGCTTGGAGGAAAAGTGCCTGNNNAAGACCACATANNNTTCATAGAATCATAGACTTCATAATTCCCATCATTTCCTAACCACATTACTTTGTAACCTTCATTAGAGGTTCCTCCGTTCATCACCATCCCTACTGCCACTCTTGA CCATGCCTGGACTGACCTGCGCGGAATTTCCTTGAGTGATTGTGTTAGCGGATTGCATATGTAGAAGTTCCTGTGGCTAAGATCCAATAAACAGACAAGGCCACCTGCAGATGCCACTGGAATTACTATCTTTGCAGGAGCCAGGGGAACTGATGGGTGGTGCCATTTTTTCAGCGAAGGGTCATACATCGCTACATTGTTGCTGGCATTCTCATGGGTGATTGTATAGAA CCATGGCAGCCTC TGTGGAACTTCTGAGTACTGC                                                                                                      ]


>consensus_12944#0 TTTTTTGATTGATAAAGAAGTATCATCAAGACCCAGGAGCATCAGTTCAGCCCCAGTTAT TACTATAGAGAGTACATACTCAGTTTTTGGGCAGATGACTGCAGATTCAGAAATAAGTAA TACACACTGAAGACGAGACGATATCATGATAATGAAAACAAGCAAAAAACCAAGACTAAA CAGATGTCTTCTGTCCAGCCTTCTGGCAAGGACCTTAATATCTCTAAGAAGACTTAAACC AGTTGGTGTAGTGCCGACCCCAAATTCCTCTAGATGATAGACCAAACGATATCGATTGCT TCAGCGAGATACAAAAACAACCACAGGTTACATGATTTTGTACATGACAGATAACCTTCT CACGGTAAGACGGAAATATCTAAGGATAGGCCAATGATCCGGAATGTGTGAAATCTCAAC CACCTTTGGTGAAGAAAGTGAAAAAAAACTGTCAGGCCAAGGCAGAGGGGCATGGACCAA ATGCTGTGCCACATGCTATCCACTGCTTTTTGCGGCTGCATGGGAGCATGCAATCAGGAA CCTTCTGCCACTCCTTGTTCAAAAGGTTGTATGTCACGAGGCGGTTCATCCGCTTCGCCT TCAAGGAGAGCATGAGCAAACCACTGTTGCCCAGGCATGTCATCTTCATGTGCTTACCGT AGAATTCTAAGCACCAGATATTTGGCATTCTGTCCACCTCCTTCCAGAGGAGAGTCATCT TCTGCAACTCCCAAATGCAGACACATGTCGCTGCATTTTTGCAGAGCAGACCCACCAGCA TAACCCTTCCCTGGAACTCGGCAAGTGTGTGGTCAGTCAGATGAAGTGGCAGTGGGATGA CGAATTGTCTCCATATCCCAGTGCTTACATCATACGACAAAACACCCTCTGGTTCTGCAC ACATGAAGTATAGCATGCTGCCAACCGCCACAGGCTGTGACCTAAAATTTAGAGCAAGCG GAAGTTTGATGCTTGGAGGAAAAGTGCCTGGACAAGACCACATATTGTTCATAGAATCAT AGACTTCATAATTCCCATCATTTCCTAACCACATTACTTTGTAACCTTCATTAGAGGTTC CTCCGTTCATCACCATCCCTACTGCCACTCTTGACCATGCCTGGACTGACCTGCGCGGAA TTTCCTTGAGTGATTGTGTTAGCGGATTGCATATGTAGAAGTTCCTGTGGCTAAGATCCA ATAAACAGACAAGGCCACCTGCAGATGCCACTGGAATTACTATCTTTGCAGGAGCCAGGG GAAATGATGGGTGGTGCCATTTTTTCAGCGAAGGGTCATACATCGCTACATTGTTGCTGG CATTCTCATGGGTGATTGTATAGAAGCCATGGCAGCCTCTTGTGGAACTTCTGAGTACTG CTGAGAGAAACTTTCTGAGCCCAACATAGAATACCAATTCCGGCAAACAGTGCGAAATCG GAAAATTGCAGCAACTGGAAGTCTTGCAACAAGCGGTATGAAA



consensusID : consensus_12944#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 757
fasta sequence
                              [GCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGAAGAAGAGAAAAGAAAAGAAAAGAAAAGAAAATATTTTTTGTTGTTGTTCTGGGGGAAGAGGAGGAGGAGGAGAGGGGCGCCGCTGCGGCGGCGGCGGGAGGAGGGAGGATGGGGACTAAACAGATGTCTTCTGTCCAGCCTTCTGGCAAGGACCTTAATATCTCTAAGAAGACTTAAACCAGTTGGTGTAGTGCCGACCCCAAATTCCTCTAGATGATAGACCAAACGATATCGATTGCTTCAGCGAGATACAAAAACAACCACAGGTTACATGATTTTGTACATGACAGATAACCTTCTCACGGTAAGACGGAAATATCTAAGGATAGGCCAATGATCCGGAATGTGTGAAATCTCAACCACCTTTGGTGAAGAAAGTGAAAAAAAACTGTCAGGCCAAGGCAGAGGGGCATGGACCAAATGCTGTGCCACATGCTATCCACTGCTTTTTGCGGCTGCATGGGAGCATGCAATCAGGAACCTTCTGCCACTCCTTGTTCAAAAGGTTGTATGTCACGAGGCGGTTCATCCGCTTCGCCTTCAAGGAGAGCATGAGCAAACCACTGTTGCCCAGGCATGTCATCTTCATGTGCTTACCGTAGAATTCTAAGCACCAGATATTTGGCATTCTGTCCACCTCCTTCCAGAGGAGAGTCATCTTCTGCAACTCCCAAATGCAGACACATGTCGCTGCATTTTTGCAGAGCAGACCCACCAGCATAACC]

[+] EMBL CB654095             [GCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGAAGAAGAGAAAAGAAAAGAAAAGAAAAGAAAATATTTTTTGTTGTTGTTCTGGGGGAAGAGGAGGAGGAGGAGAGGGGCGCCGCTGCGGCGGCGGCGGGAGGAGGGAGGATGGGGACTAAACAGATGTCTTCTGTCCAGCCTTCTGGCAAGGACCTTAATATCTCTAAGAAGACTTAAACCAGTTGGTGTAGTGCCGACCCCAAATTCCTCTAGATGATAGACCAAACGATATCGATTGCTTCAGCGAGATACAAAAACAACCACAGGTTACATGATTTTGTACATGACAGATAACCTTCTCACGGTAAGACGGAAATATCTAAGGATAGGCCAATGATCCGGAATGTGTGAAATCTCAACCACCTTTGGTGAAGAAAGTGAAAAAAAACTGTCAGGCCAAGGCAGAGGGGCATGGACCAAATGCTGTGCCACATGCTATCCACTGCTTTTTGCGGCTGCATGGGAGCATGCAATCAGGAACCTTCTGCCACTCCTTGTTCAAAAGGTTGTATGTCACGAGGCGGTTCATCCGCTTCGCCTTCAAGGAGAGCATGAGCAAACCACTGTTGCCCAGGCATGTCATCTTCATGTGCTTACCGTAGAATTCTAAGCACCAGATATTTGGCATTCTGTCCACCTCCTTCCAGAGGAGAGTCATCTTCTGCAACTCCCAAATGCAGACACATGTCGCTGCATTTTTGCAGAGCAGACCCACCAGCATAACC]


>consensus_12944#1 GCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGAAGAAGAGAAAAGAAAAGAAAAGAAAAGA AAATATTTTTTGTTGTTGTTCTGGGGGAAGAGGAGGAGGAGGAGAGGGGCGCCGCTGCGG CGGCGGCGGGAGGAGGGAGGATGGGGACTAAACAGATGTCTTCTGTCCAGCCTTCTGGCA AGGACCTTAATATCTCTAAGAAGACTTAAACCAGTTGGTGTAGTGCCGACCCCAAATTCC TCTAGATGATAGACCAAACGATATCGATTGCTTCAGCGAGATACAAAAACAACCACAGGT TACATGATTTTGTACATGACAGATAACCTTCTCACGGTAAGACGGAAATATCTAAGGATA GGCCAATGATCCGGAATGTGTGAAATCTCAACCACCTTTGGTGAAGAAAGTGAAAAAAAA CTGTCAGGCCAAGGCAGAGGGGCATGGACCAAATGCTGTGCCACATGCTATCCACTGCTT TTTGCGGCTGCATGGGAGCATGCAATCAGGAACCTTCTGCCACTCCTTGTTCAAAAGGTT GTATGTCACGAGGCGGTTCATCCGCTTCGCCTTCAAGGAGAGCATGAGCAAACCACTGTT GCCCAGGCATGTCATCTTCATGTGCTTACCGTAGAATTCTAAGCACCAGATATTTGGCAT TCTGTCCACCTCCTTCCAGAGGAGAGTCATCTTCTGCAACTCCCAAATGCAGACACATGT CGCTGCATTTTTGCAGAGCAGACCCACCAGCATAACC



consensusID : consensus_12944#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 555
fasta sequence
                              [TTTTTTTTGAAGCAACTAGTGATTGATAAAGAAGTATCATCAAGACCCAGGAGCATCAGTTCAGCCCCAGTTATTACTATAGAGAGTACATACTCAGTTTTTGGGCAGATGACTGCAGATTCAGAAATAAGTAATACACACTGAAGACGAGACGATATCATGATAATGAAAACAAGCAAAAAACCAAGACTAAACAGATGTCTTCTGTCCAGCCTTCTGGCAAGGACCTTAATATCTCTAAGAAGACTTAAACCAGTTGGTGTNGTGCCGACCCCAAATTCCTCTAGATGATAGACCAAACGATATCGATTGCTTCAGCGAGATACNAAAACNACCACNGGTTNCATGATTTTGTNCATGACAGATAACTTCTCNCNGGTNAGACGGAATTCTAAGATAGGCCNTGATCCNGAAGTNTTAATCTCCCCACCTTGGTGAAGAAANTGAAAAAAACTGTCCGGCCAGGNGAAGGGCTNGACCAATGCTGTGCCCTGCTTCCCTGNTTTTTGNGGTGCTTGGGACNTCATCNGACTCCGCCNCCTTTCCAAGNGTTNT]

[-] EMBL AA753964             [TTTTTTTTGAAGCAACTAGTGATTGATAAAGAAGTATCATCAAGACCCAGGAGCATCAGTTCAGCCCCAGTTATTACTATAGAGAGTACATACTCAGTTTTTGGGCAGATGACTGCAGATTCAGAAATAAGTAATACACACTGAAGACGAGACGATATCATGATAATGAAAACAAGCAAAAAACCAAGACTAAACAGATGTCTTCTGTCCAGCCTTCTGGCAAGGACCTTAATATCTCTAAGAAGACTTAAACCAGTTGGTGTNGTGCCGACCCCAAATTCCTCTAGATGATAGACCAAACGATATCGATTGCTTCAGCGAGATACNAAAACNACCACNGGTTNCATGATTTTGTNCATGACAGATAACTTCTCNCNGGTNAGACGGAATTCTAAGATAGGCCNTGATCCNGAAGTNTTAATCTCCCCACCTTGGTGAAGAAANTGAAAAAAACTGTCCGGCCAGGNGAAGGGCTNGACCAATGCTGTGCCCTGCTTCCCTGNTTTTTGNGGTGCTTGGGACNTCATCNGACTCCGCCNCCTTTCCAAGNGTTNT]
[-] EMBL BM418569             [                   tttTTGATAAAGAAGTATCATCAAGACCCAGGAGCATCAGTTCAGCCCCAGTTATTACTATAGAGAGTACATACTCAG TTTTGGGCAGATGACTG AGATTCAGAAATAAGTAATACACACTGAAGACGAGACGATATCATGATAATGAAAACAAGCAAAAAACCAAGACTAAACAGATGTCTTCcgg                                                                                                                                                                                                                                                                                                                                                           ]


>consensus_12944#2 TTTTTTTTGAAGCAACTAGTGATTGATAAAGAAGTATCATCAAGACCCAGGAGCATCAGT TCAGCCCCAGTTATTACTATAGAGAGTACATACTCAGTTTTTGGGCAGATGACTGCAGAT TCAGAAATAAGTAATACACACTGAAGACGAGACGATATCATGATAATGAAAACAAGCAAA AAACCAAGACTAAACAGATGTCTTCTGTCCAGCCTTCTGGCAAGGACCTTAATATCTCTA AGAAGACTTAAACCAGTTGGTGTNGTGCCGACCCCAAATTCCTCTAGATGATAGACCAAA CGATATCGATTGCTTCAGCGAGATACNAAAACNACCACNGGTTNCATGATTTTGTNCATG ACAGATAACTTCTCNCNGGTNAGACGGAATTCTAAGATAGGCCNTGATCCNGAAGTNTTA ATCTCCCCACCTTGGTGAAGAAANTGAAAAAAACTGTCCGGCCAGGNGAAGGGCTNGACC AATGCTGTGCCCTGCTTCCCTGNTTTTTGNGGTGCTTGGGACNTCATCNGACTCCGCCNC CTTTCCAAGNGTTNT



consensusID : consensus_12944#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 541
fasta sequence
                              [NNNTTNNNGNNNNNNNCNAATGCAGACACANNNCNNNGCATTNNNNNNGAGCAGACCCACCAGCATAANNNNNNCCTGGAACTCGGCAAGTGTGTGGTCAGTCAGATGAAGTGGCAGTGGGATGACGAATTGTCTCCATATCCCAGTGCTTACATCATACGACAAAACACCCTCTGGTTCTGCACACATGAAGTATAGCATGCTGCCAACCGCCACAGGCTGTGACCTAAAATTTAGAGCAAGCGGAAGTTTGATGCTTGGAGGAAAAGTGCCTGGACAAGACCACATATTCTTCATAGAATCATAGACTTCATAATTCCCATCATTTCCTAACCACATTACTTTGTAACCTTCATTAGAGGTTCCTCCGTTCATCACCATCCCTACTGCCACTCTTGACCATGCCTGGACTGACCTGCGCGGAATTTCCTTGAGTGATTGTGTTAGCGGATTGCATATGTAGAAGTTCCTGTGGCTAAGATCCAATAAACAGACAAGGCCACCTGCAGATGCCACTGGAATTACTATCTTTGCAGGAGCC]

[-] EMBL CF197033             [NNNTTNNNGNNNNNNNCNAATGCAGACACANNNCNNNGCATTNNNNNNGAGCAGACCCACCAGCATAANNNNNNCCTGGAACTCGGCAAGTGTGTGGTCAGTCAGATGAAGTGGCAGTGGGATGACGAATTGTCTCCATATCCCAGTGCTTACATCATACGACAAAACACCCTCTGGTTCTGCACACATGAAGTATAGCATGCTGCCAACCGCCACAGGCTGTGACCTAAAATTTAGAGCAAGCGGAAGTTTGATGCTTGGAGGAAAAGTGCCTGGACAAGACCACATATTCTTCATAGAATCATAGACTTCATAATTCCCATCATTTCCTAACCACATTACTTTGTAACCTTCATTAGAGGTTCCTCCGTTCATCACCATCCCTACTGCCACTCTTGACCATGCCTGGACTGACCTGCGCGGAATTTCCTTGAGTGATTGTGTTAGCGGATTGCATATGTAGAAGTTCCTGTGGCTAAGATCCAATAAACAGACAAGGCCACCTGCAGATGCCACTGGAATTACTATCTTTGCAGGAGCC]


>consensus_12944#3 NNNTTNNNGNNNNNNNCNAATGCAGACACANNNCNNNGCATTNNNNNNGAGCAGACCCAC CAGCATAANNNNNNCCTGGAACTCGGCAAGTGTGTGGTCAGTCAGATGAAGTGGCAGTGG GATGACGAATTGTCTCCATATCCCAGTGCTTACATCATACGACAAAACACCCTCTGGTTC TGCACACATGAAGTATAGCATGCTGCCAACCGCCACAGGCTGTGACCTAAAATTTAGAGC AAGCGGAAGTTTGATGCTTGGAGGAAAAGTGCCTGGACAAGACCACATATTCTTCATAGA ATCATAGACTTCATAATTCCCATCATTTCCTAACCACATTACTTTGTAACCTTCATTAGA GGTTCCTCCGTTCATCACCATCCCTACTGCCACTCTTGACCATGCCTGGACTGACCTGCG CGGAATTTCCTTGAGTGATTGTGTTAGCGGATTGCATATGTAGAAGTTCCTGTGGCTAAG ATCCAATAAACAGACAAGGCCACCTGCAGATGCCACTGGAATTACTATCTTTGCAGGAGC C



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12944#0      TTTTTTGATTGATAAAGAAGTATCATCAAGACCCAGGAGCATCAGTTCAGCCCCAGTTAT 60
consensus_12944#3      ------------------------------------------------------------
consensus_12944#1      ------------------------------------------------------------
consensus_12944#2      ------------------------------------------------------------
                                                                                   

consensus_12944#0      TACTATAGAGAGTACATACTCAGTTTTTGGGCAGATGACTGCAGATTCAGAAATAAGTAA 120
consensus_12944#3      ------------------------------------------------------------
consensus_12944#1      ------------------------------------------------------------
consensus_12944#2      ------------------------------------------------------------
                                                                                   

consensus_12944#0      TACACACTGAAGACGAGACGATATCATGATAATGAAAACAAGCAAAAAACCAAGACTAAA 180
consensus_12944#3      ------------------------------------------------------------
consensus_12944#1      ------------------------------------------------------------
consensus_12944#2      ------------------------------------------------------------
                                                                                   

consensus_12944#0      CAGATGTCTTCTGTCCAGCCTTCTGGCAAGGACCTTAATATCTCTAAGAAGACTTAAACC 240
consensus_12944#3      ------------------------------------------------------------
consensus_12944#1      ------------------------------------------------------------
consensus_12944#2      ------------------------------------------------------------
                                                                                   

consensus_12944#0      AGTTGGTGTAGTGCCGACCCCAAATTCCTCTAGATGATAGACCAAACGATATCGATTGCT 300
consensus_12944#3      ------------------------------------------------------------
consensus_12944#1      ------------------------------------------------------------
consensus_12944#2      ------------------------------------------------------------
                                                                                   

consensus_12944#0      TCAGCGAGATACAAAAACAACCACAGGTTACATGATTTTGTACATGACAGATAACCTTCT 360
consensus_12944#3      ------------------------------------------------------------
consensus_12944#1      ------------------------------------------------------------
consensus_12944#2      ------------------------------------------------------------
                                                                                   

consensus_12944#0      CACGGTAAGACGGAAATATCTAAGGATAGGCCAATGATCCGGAATGTGTGAAATCTCAAC 420
consensus_12944#3      ------------------------------------------------------------
consensus_12944#1      ------------------------------------------------------------
consensus_12944#2      ------------------------------------------------------------
                                                                                   

consensus_12944#0      CACCTTTGGTGAAGAAAGTGAAAAAAAACTGTCAGGCCAAGGCAGAGGGGCATGGACCAA 480
consensus_12944#3      ------------------------------------------------------------
consensus_12944#1      ------------------------------------------------------------
consensus_12944#2      ------------------------------------------------------------
                                                                                   

consensus_12944#0      ATGCTGTGCCACATGCTATCCACTGCTTTTTGCGGCTGCATGGGAGCATGCAATCAGGAA 540
consensus_12944#3      ------------------------------------------------------------
consensus_12944#1      ------------------------------------------------------------
consensus_12944#2      ------------------------------------------------------------
                                                                                   

consensus_12944#0      CCTTCTGCCACTCCTTGTTCAAAAGGTTGTATGTCACGAGGCGGTTCATCCGCTTCGCCT 600
consensus_12944#3      ------------------------------------------------------------
consensus_12944#1      ------------------------------------------------------------
consensus_12944#2      ------------------------------------------------------------
                                                                                   

consensus_12944#0      TCAAGGAGAGCATGAGCAAACCACTGTTGCCCAGGCATGTCATCTTCATGTGCTTACCGT 660
consensus_12944#3      ------------------------------------------------------------
consensus_12944#1      ------------------------------------------------------------
consensus_12944#2      ----------------------------------------------------------TT 2
                                                                                   

consensus_12944#0      AGAATTCTAAGCACCAGATATTTGGCATTCTGTCCACCTCCTTCCAGAGGAGAGTCATCT 720
consensus_12944#3      -------------------------------------------------------NNNTT 5
consensus_12944#1      ----------------------------GCAGCAGCAGCAGCAGC-AGCAGCAGCAGAAG 31
consensus_12944#2      TTTTTTGAAGCAACTAGTGATTGATAAAGAAGTATCATCAAGACCCAGGAGCATCAGTTC 62
                                                                                   

consensus_12944#0      TCTGCAACTCCCAAATGCAGACACATGTCGCTGCATTTTTGCAGAGCAGACCCACCAGCA 780
consensus_12944#3      NNNGNNNNNNNCNAATGCAGACACANNNCNNNGCATTNNNNNNGAGCAGACCCACCAGCA 65
consensus_12944#1      AAGAAGAGAAAAGAAAAGAAAAGAAAAGAAAATATTTTTTG---------TTGTTGTTCT 82
consensus_12944#2      AGCCCCAGTTATTACTATAGAGAGTACATACTCAGTTTTTGGGCAGATGACTGCAGATTC 122
                                    *    * *              **                       

consensus_12944#0      TAACCCTTCCCTGGAACTCGGCAAGTGTGTGGTCAGTCAGATGAAGTGGCAGTG-GGATG 839
consensus_12944#3      TAANNNNNNCCTGGAACTCGGCAAGTGTGTGGTCAGTCAGATGAAGTGGCAGTG-GGATG 124
consensus_12944#1      GGGGGAAGAGGAGGAGGAGGAGAGGGGCGCCGCTGCGGCGGCGGCGGGAGGAGG--GAGG 140
consensus_12944#2      AGAAATAAGTAATACACACTGAAGACGAGACGATATCATGATAATGAAAACAAGCAAAAA 182
                                             *   * *  *       *     *       *   *  

consensus_12944#0      ACGAATTGTCTCCATATCCCAGTGCTTACATCATACGACAAAACACCCTCTGGTTCT--G 897
consensus_12944#3      ACGAATTGTCTCCATATCCCAGTGCTTACATCATACGACAAAACACCCTCTGGTTCT--G 182
consensus_12944#1      ATGGGGACTAAACAGATGTCTTCTGTCCAGCCTTCTGGCAAGGACCTTAATATCTCTAAG 200
consensus_12944#2      ACCAAGACTAAACAGATGTCTTCTGTCCAGCCTTCTGGCAAGGACCTTAATATCTCTAAG 242
                       *       *   ** **  *     *     * *  * ***    *    *   ***  *

consensus_12944#0      CACACATGAAGTA--TAGCATGCTGCCAACCGCCACAGGCTGTGACCTAAAATTTAGAGC 955
consensus_12944#3      CACACATGAAGTA--TAGCATGCTGCCAACCGCCACAGGCTGTGACCTAAAATTTAGAGC 240
consensus_12944#1      AAGACTTAAACCAGTTGGTGTAGTGCCGACC-CCAAATTCC----TCTAGATGATAGACC 255
consensus_12944#2      AAGACTTAAACCAGTTGGTGTNGTGCCGACC-CCAAATTCC----TCTAGATGATAGACC 297
                        * ** * **  *  * *  *  **** *** *** *  *      *** *   **** *

consensus_12944#0      AAGCGGAA--GTTTGATGCTTGGAGGAAAAGTGCCTGGACAAGACCACAT-ATTGTTCAT 1012
consensus_12944#3      AAGCGGAA--GTTTGATGCTTGGAGGAAAAGTGCCTGGACAAGACCACAT-ATTCTTCAT 297
consensus_12944#1      AAACGATATCGATTGCTTCAGCGAGATACAAAAACAACCACAGGTTACATGATTTTGTAC 315
consensus_12944#2      AAACGATATCGATTGCTTCAGCGAGATACNAAAACNACCACNGGTTNCATGATTTTGTNC 357
                       ** **  *  * *** * *   ***  *      *       *    *** *** *    

consensus_12944#0      AGAATCATAGACTTCATAATTCCCATCATTTCCTAACCACATTACTTTGTAACCTTCATT 1072
consensus_12944#3      AGAATCATAGACTTCATAATTCCCATCATTTCCTAACCACATTACTTTGTAACCTTCATT 357
consensus_12944#1      ATGACAGATAACCTT----CTCACGGTAAGACGGAAATATCTAAGGATAGGCCAATGATC 371
consensus_12944#2      ATGACAGATAACTTC----TCNCNGGTNAGACGGAATTCT---AAGATAGGCCN-TGATC 409
                       *  *      ** *                 *  **       *   *    *  * ** 

consensus_12944#0      AGAGGTTCCTCCGTTCATCACCATCCCTACTGCCACTCTTGACCATGCCTGGACTGACCT 1132
consensus_12944#3      AGAGGTTCCTCCGTTCATCACCATCCCTACTGCCACTCTTGACCATGCCTGGACTGACCT 417
consensus_12944#1      CGGAATGTGTGAAATCTCAACCACCTTTGGTGAAGAAAGTGAAAAAAAACTGTCAGGCCA 431
consensus_12944#2      CNGAA-GTNTTAATCTCC--CCACCTT-GGTGAAGAAANTGAAAAAAA-CTGTCCGGCCA 464
                                *          *** *     **       ***  *      * * * ** 

consensus_12944#0      GCGCGGAATTTCCTTGAGTGATTGTGTTAGCGGATTGCATATGTAGAAGTTCCTG--TGG 1190
consensus_12944#3      GCGCGGAATTTCCTTGAGTGATTGTGTTAGCGGATTGCATATGTAGAAGTTCCTG--TGG 475
consensus_12944#1      AGGCAGAGGGGCATGGACCAAATGCTGTGCCACATGCTATCCACTGCTTTTTGCGGCTGC 491
consensus_12944#2      GGN--GAAGGGC-TNGACCAA-TGCTGTGCCCTGC----TTCCCTGNTTTTTGNGG-TGC 515
                            **    * * **   * **   *  *        *     *   **   *  ** 

consensus_12944#0      CTAAGATCCAATAAACAGACAAGGCCACCTGCAGATGCCACTGGAATTACTATCTTTGCA 1250
consensus_12944#3      CTAAGATCCAATAAACAGACAAGGCCACCTGCAGATGCCACTGGAATTACTATCTTTGCA 535
consensus_12944#1      ATGGGAGCATGCAATCAGGAACCTTCTGCCACTCCTTGTTCAAAAGGTTGTATGTCACGA 551
consensus_12944#2      TTGGGA---CNTCATCNGA----CTCCGCCNCCT----TTCCAAGNGTTNT--------- 555
                        *  **       * * *       *  *  *        *      *  *         

consensus_12944#0      GGAGCCAGGGGAAATGATGGGTGGTGCCATTTTTTCAGCGAAGGGTCATACATCGCTACA 1310
consensus_12944#3      GGAGCC------------------------------------------------------ 541
consensus_12944#1      GGCGGTTCATCCGCTTCGCCTTCAAGGAGAGCATGAGCAAACCACTGTTGCCCAGGCATG 611
consensus_12944#2      ------------------------------------------------------------
                                                                                   

consensus_12944#0      TTGTTGCTGGCATTCTCATGGGTGATTGTATAGAAGCCATGGCAGCCTCTTGTGGAACTT 1370
consensus_12944#3      ------------------------------------------------------------
consensus_12944#1      TCATCTTCATGTGCTTACCGTAGAATTCTAAGCACCAGATATTTGGCATTCTGTCCACCT 671
consensus_12944#2      ------------------------------------------------------------
                                                                                   

consensus_12944#0      CTGAGTACTGCTGAGAGAAACTTTCTGAGCCCAACATAGAATACCAATTCCGGCAAACAG 1430
consensus_12944#3      ------------------------------------------------------------
consensus_12944#1      CCTTCCAGAGGAGAGTCATCTTCTGCAACTCCCAAATGCAGACACATGTCGCTGCATTTT 731
consensus_12944#2      ------------------------------------------------------------
                                                                                   

consensus_12944#0      TGCGAAATCGGAAAATTGCAGCAACTGGAAGTCTTGCAACAAGCGGTATGAAA 1483
consensus_12944#3      -----------------------------------------------------
consensus_12944#1      TGCAGAGCAGACCCACCAGCATAACC--------------------------- 757
consensus_12944#2      -----------------------------------------------------
                                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)