These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12953#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2190 fasta sequence [CTGAAGGAGTAGAAAACACAAACCGAGCTCCTCAAGCTCTCTCTCTTTCTCTCCCATGTCCGGCCATTAGTGCCACCGGCCGATCTCCCTCCCCGGAGCTTCGCAAGCCAAGTCCTTGCGCCACCAACTCCGCCTCGCCGAGGTGATTCTATTTTTCCCCTTTCCCCTTTCCCTCCACCTTAAGATAAGCCGCCACCACCACCTTCTCTTATTGCCGGAGCTGAGCTCTTGTCGCCACTGTTCCGGCCATCCCTCTCTCTCCCTCCGCCTTCCACCACCCTCCCCGGGTGCGCGTCGCTCGGGAACACCATCTCCTACCGGCGTTCTCACCTCCCGGCCACCGGAGAGCCGGTGCCTTGCTTGCCCTCCTCTCTGTTACCTCTCGGCTGCCAAACAGAAGAAGAAAAAAAGAAGAACGAGAGGAAGAAGAAGAGGAAGGAGAAGGCATTGACAAGTAATAATAACTCCCTTTTTCTTTTATTTGTTTTTCAATCTTTAAGAGCTCATATCTCTTCAACCACAAATCCAATTCCAAGAATTCTTTGATCTAAATTCATCCAATTTCAAATCCTTTATTTTGATACCAAATTTCCTATTTTTAAAATTTTAATTAAAATTCTTTATTTAAAAACCTTTTCCTTATTTATTTATTTACTTTCTAATTCTAAATTATTTTAATTAACCTTTAAAAAATATATATTTTAAATTTATTTGATTTACTTTATATCCCTTTAATTTTAAATTTCTTGTTTGAAAAACCTTTTTAAAATTTAATTTTCCTTTAATTTCTTTAAAAGCCATTTCCTTTCAAAATTCAAATATCTTTTGACCTTTTGCTTTTGCCTCTCTTCATGCTCCAATTTTGTTATTTTCTTTTACCGTTTATCTGTAGTACTTTCCCTTATAGGTTTTATTTGCTATCTTTTACGTATACGTACGTTAGACAATACAGAAAATCTCATCAACATCACAGGAGCTGACGTGGATCCAGCCGACTACGCTGAAGCCTTTGAAAGTTTCAAGGCTCAAGGCAAGACACAATTAAAATTTTGACCACATGAAATAATCAACCCTCATGTTTACTTTATGCATAAGTTAATCATATGAATAACATTGTGGTGGCTTAAAATGATATTTAATACTTTTAAGCATTGTTATATGAGATTATGGAAAGGTATACTGAACATCATTTTATGTGGTTTATTATTCAAACATCTTTACAAACTTAGGAATCCGGTTAAAATGGGTATTTTTGAATGTTATATATAATGAAGTTTGTTGGTGTGGGGAGTTTGGAAAGTTTTGGGTGGTTTAACTGGATTATAATTACCCCCTTATACCATGGGAAATGACATAGTTGTGTCCATCCACATAACCAGGTAATTATTGGACTTAGCCTAGTACATTGTCCCACTATATGAAAGACTGTTGGGTGGCTCTATGAGCGGTTGGTGTGAACATGCGTAAGGAGTTAGGGGGCAGTGTTTCATAACAGTAGGTCCCGTGAAAGTGTGACGATATAGTAACCTTGCTTTAGGCCTGGCAAGAGTTCGACCACTATGATGAGCCAAGATTCTACTGTGCAGTAACTAGTAGTAAGTGGGACCTTCGAACGGCTCTGGTGTCCTCAGCCTTGCAAAGTATTTGAAAGAGCATCTATGCCCCTAGTGGGTTTTGGTTTATTGATGACAAATGATTAAGGGACTACTGCACTTATTAAGTGTCTAAGCAAGTGATTAGTCCGATGAAGAAGCTAGGAAATGGACTTATCGATGGATGAGAATTAAAGAGAAGATATTGAAGATGCGGGTATGAAGTGACTACCTATGGCAAGACGGTGAAGCGCAAGCGACGCTCAGTTGCGATGGACCATACGGTGGTAAAGGGCAAGCAAGGGGGTTGGCGCCGACGAACCGAAACCGGTGGTGAAGGGCGAGTGAAGACTGTGTCGTGATGAACCGTGCGAGGCCATTTGAAGCCATGGATTATCCACATCAATCATTTGAGAAATGGAAGATGAAATGTCAAAGATCAAGAAGATGAGATCGTCCCGATGATCAAATGACCTTGACGTTGGTAACCCTCCAAGAGAAAAAACAATATGGTGTGAAGGTACTCCTATTGGTATAACTTTGCCTTTCAAATTTGAGTTTAGGAGGCCGTACTATTAAGAGAGATACCACATGCATA] [+] EMBL CF330543 [CTGAAGGAGTAGAAAACACAAACCGAGCTCCTCAAGCTCTCTCTCTTTCTCTCCCATGTCCGGCCATTAGTGCCACCGGCCGATCTCCCTCCCCGGAGCTTCGCAAGCCAAGTCCTTGCGCCACCAACTCCGCCTCGCCGAGGTGATTCTATTTTTCCCCTTTCCCCTTTCCCTCCACCTTAAGATAAGCCGCCACCACCACCTTCTCTTATTGCCGGAGCTGAGCTCTTGTCGCCACTGTTCCGGCCATCCCTCTCTCTCCCTCCGCCTTCCACCACCCTCCCCGGGTGCGCGTCGCTCGGGAACACCATCTCCTACCGGCGTTCTCACCTCCCGGCCACCGGAGAGCCGGTGCCTTGCTTGCCCTCCTCTCTGTTACCTCTCGGCTGCCAAACAGAAGAAGAAA ] [+] EMBL AK110971 [ GAGCTCCTCAAGCTCTCTCTCTTTCTCTCCCATGTCCGGCCATTAGTGCCACCGGCCGATCTCCCTCCCCGGAGCTTCGCAAGCCAAGTCCTTGCGCCACCAACTCCGCCTCGCCGAGGTGATTCTATTTTTCCCCTTTCCCCTTTCCCTCCACCTTAAGATAAGCCGCCACCACCACCTTCTCTTATTGCCGGAGCTGAGCTCTTGTCGCCACTGTTCCGGCCATCCCTCTCTCTCCCTCCGCCTTCCACCACCCTCCCCGGGTGCGCGTCGCTCGGGAACACCATCTCCCACCGGCGTTCTCACCTCCCGGCCACCGGAGAGCCGGTGCCTTGCTTGCCCTCCTCTCTGTTACCTCTCGGCTGCCAAACAGAAGAAAAAAAAAAGAAGAACGAGAGGAAGAAGAAGAGGAAGGAGAAGGCATTGACAAGTAATAATAACTCCCTTTTTCTTTTATTTGTTTTTCAATCTTTAAGAGCTCATATCTCTTCAACCACAAATCCAATTCCAAGAATTCTTTGATCTAAATTCATCCAATTTCAAATCCTTTATTTTGATACCAAATTTCCTATTTTTAAAATTTTAATTAAAATTCTTTATTTAAAAACCTTTTCCTTATTTATTTATTTACTTTCTAATTCTAAATTATTTTAATTAACCTTTAAAAAATATATATTTTAAATTTATTTGATTTACTTTATATCCCTTTAATTTTAAATTTCTTGTTTGAAAAACCTTTTTAAAATTTAATTTTCCTTTAATTTCTTTAAAAGCCATTTCCTTTCAAAATTCAAATATCTTTTGACCTTTTGCTTTTGCCTCTCTTCATGCTCCAATTTTGTTATTTTCTTTTACCGTTTATCTGTAGTACTTTCCCTTATAGGTTTTATTTGCTATCTTTTACGTATACGTACGTTAGACAATACAGAAAATCTCATCAACATCACAGGAGCTGACGTGGATCCAGCCGACTACGCTGAAGCCTTTGAAAGTTTCAAGGCTCAAGGCAAGACACAATTAAAATTTTGACCACATGAAATAATCAACCCTCATGTTTACTTTATGCATAAGTTAATCATATGAATAACATTGTGGTGGCTTAAAATGATATTTAATACTTTTAAGCATTGTTATATGAGATTATGGAAAGGTATACTGAACATCATTTTATGTGGTTTATTATTCAAACATCTTTACAAACTTAGGAATCCGGTTAAAATGGGTATTTTTGAATGTTATATATAATGAAGTTTGTTGGTGTGGGGAGTTTGGAAAGTTTTGGGTGGTTTAACTGGATTATAATTACCCCCTTATACCATGGGAAATGACATAGTTGTGTCCATCCACATAACCAGGTAATTATTGGACTTAGCCTAGTACATTGTCCCACTATATGAAAGACTGTTGGGTGGCTCTATGAGCGGTTGGTGTGAACATGCGTAAGGAGTTAGGGGGCAGTGTTTCATAACAGTAGGTCCCGTGAAAGTGTGACGATATAGTAACCTTGCTTTAGGCCTGGCAAGAGTTCGACCACTATGATGAGCCAAGATTCTACTGTGCAGTAACTAGTAGTAAGTGGGACCTTCGAACGGCTCTGGTGTCCTCAGCCTTGCAAAGTATTTGAAAGAGCATCTATGCCCCTAGTGGGTTTTGGTTTATTGATGACAAATGATTAAGGGACTACTGCACTTATTAAGTGTCTAAGCAAGTGATTAGTCCGATGAAGAAGCTAGGAAATGGACTTATCGATGGATGAGAATTAAAGAGAAGATATTGAAGATGCGGGTATGAAGTGACTACCTATGGCAAGACGGTGAAGCGCAAGCGACGCTCAGTTGCGATGGACCATACGGTGGTAAAGGGCAAGCAAGGGGGTTGGCGCCGACGAACCGAAACCGGTGGTGAAGGGCGAGTGAAGACTGTGTCGTGATGAACCGTGCGAGGCCATTTGAAGCCATGGATTATCCACATCAATCATTTGAGAAATGGAAGATGAAATGTCAAAGATCAAGAAGATGAGATCGTCCCGATGATCAAATGACCTTGACGTTGGTAACCCTCCAAGAGAAAAAACAATATGGTGTGAAGGTACTCCTATTGGTATAACTTTGCCTTTCAAATTTGAGTTTAGGAGGCCGTACTATTAAGAGAGATACCACATGCATA] [-] EMBL CF330544 [ GAGCTCCTCAAGCTCTCTCTCTTTCTCTCCCATGTCCGGCCATTAGTGCCACCGGCCGATCTCCCTCCCCGGAGCTTCGCAAGCCAAGTCCTTGCGCCACCAACTCCGCCTCGCCGAGGTGATTCTATTTTTCCCCTTTCCCCTTTCCCTCCACCTTAAGATAAGCCGCCACCACCACCTTATATTATTGCCGGAGCTGAGCTCTTGTCGCCACTGTTCCGGCCAAAAATATATCTCCCTCCGCCTTCCACCACCCTCCCCGGGTGCGCGTCGCTCGGGAACACCATCTCCTACCGGCGTTCTCACCTCCCGGCCACCGGAGAGCCGGTGCCTTGCTTGCCCTCCTCTCTGTTACCTCTCGGCTGCCAAACAGAAGAAGAAAA ] consensusID : consensus_12953#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 749 fasta sequence [CGAGCTCCTCAAGCTCTCTCTCTTTCTCTCCCATGTCCGGCCATTAGTGCCACCGGCAGATCTCCCTCACCGGAGTTTCGCAAGCCAAGCCCTTGCGCCACCAACTCCGCCTCGCCGAGGTGATTCCATTTTTCCCATTTCCCCTTTTCCTCCACCTTGAGATAAGCCGCCGCCACCACCACCTTCTCTTATCGCCGGAGCTGAGCTCTTGTCGCCGCTGTTCCGGCCACCCCTCTCTCTCCCTCCGCCTTCCACCACCCTCCCCGGGTGCGCGTTGCTCGGGAACACCATCTCCAACCGGCGTTCTCACCTCCAGGCCACCGGAGAGCCGGCGCCTTGCTTGCCCTCCTCTCTGTTACCTCTCAGCTGCCAAACAGAAGAAAAAAAAAGAACGAGAGGAAGAACAGGAAGGAGAAGGCATTGACAAACAATACAGAAGATCTCATCGACATCACAGGAGCTGGCGTGGATCCAGCCGACTACGCTGAAGCCTTCGAAAGTTTCAAGGCACAAGAACCGTGTTATGAAGAAGTCCCAGAAGGTAGCGAGGCCTACTACAACGACGAGTTTTTCTAGGCTTAATCTATACTCAAGCTTATGCCTGTGAAGTTTAGTAGCTTTGGGTTTTTCTTTGTACTTTCAAATAAGGTTGTAATAGTTTGTATCTTTAAAACCATTAACAGTTGTATAATTAGTTTGCATGAACAAATTTGTATAATTAATCGAAAGCTGTTCTGTAAAAAAAAAAA] [+] EMBL CF321501 [CGAGCTCCTCAAGCTCTCTCTCTTTCTCTCCCATGTCCGGCCATTAGTGCCACCGGCAGATCTCCCTCACCGGAGTTTCGCAAGCCAAGCCCTTGCGCCACCAACTCCGCCTCGCCGAGGTGATTCCATTTTTCCCATTTCCCCTTTTCCTCCACCTTGAGATAAGCCGCCGCCACCACCACCTTCTCTTATCGCCGGAGCTGAGCTCTTGTCGCCGCTGTTCCGGCCACCCCTCTCTCTCCCTCCGCCTTCCACCACCCTCCCCGGGTGCGCGTTGCTCGGGAACACCATCTCCAACCGGCGTTCTCACCTCCAGGCCACCGGAGAGCCGGCGCCTTGCTTGCCCTCCTCTCTGTTACCTCTCAGCTGCCAAACAGAAGAAAAAAAAAGAACGAGAGGAAGAACAGGAAGGAGAAGGCATTGACAAACAATACAGAAGATCTCATCGACATCACAGGAGCTGGCGTGGATCCAGCCGACTACGCTGAAGCCTTCGAAAGTTTCAAGGCACAAGAACCGTGTTATGAAGAAGTCCCAGAAGGTAGCGAGGCCTACTACAACGACGAGTTTTTCTAGGCTTAATCTATACTCAAGCTTATGCC ] [+] EMBL CF318844 [CGAGCTCCTCAAGCTCTCTCTCTTTCTCTCCCATGTCCGGCCATTAGTGCCACCGGCAGATCTCCCTCACCGGAGTTTCGCAAGCCAAGCCCTTGCGCCACCAACTCCGCCTCGCCGAGGTGATTCCATTTTTCCCATTTCCCCTTTTTCTCCACCTTGAGATAAGCCGCCGCCACCACCACCTTCTCTTATCGCCGGAGCTGAGCTCTTGTCGCCGCTGTTCCGGCCACCCCTCTCTCTCCCTCCGCCTTACACCACCCTGCCCGGGTGCGCGTTGCTCGGG ] [-] EMBL CF321502 [ GGTGCGCGTTGCTCGGGAACACCATCTCCAACCGGCGTTTTCACCTCCAGGCCACCGGAGAGCCGGCGCCTTGCTTGCCCTCCTCTCTGTTACCTCTCAGCTGCCAAACAGAAGAAAAAAAAAGAACGAGAGGAAGAACAGGAAGGAGAAGGCATTGACAAACAATACAGAAGATCTCATCGACATCACAGGAGCTGGCGTGGATCCAGCCGACTACGCTGAAGCCTTCGAAAGTTTCAAGGCACAAGAACCGTGTTATGAAGAAGTCCCAGAAGGTAGCGAGGCCTACTACAACGACGAGTTTTTCTAGGCTTAATCTATACTCAAGCTTATGCCTGTGAAGTTTAGTAGCTTTGGGTTTTTCTTTGTACTTTCAAATAAGGTTGTAATAGTTTGTATCTTTAAAACCATTAACAGTTGTATAATTAGTTTGCATGAACAAATTTGTATAATTAATCGAAAGCTGTTCTGTAAAAAAAAAAA] consensusID : consensus_12953#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 588 fasta sequence [TTTTTTTACATAACAACTTTCGATTAATTATACAAATTTGATCATACAAACTAATTATACAACTGTTAATGGTTTTAAAGATCCAAACTATTACAACCTTATTTGAAAGTATAAAGAAAAACCCAAAGCTACTAAACTTCACAGGTATAAGCTTGAGTGGAGACTAAGCCTAGAAAAACTCGTCGTTGAAGTAGGCCTTGCTACCTTCTGGAACTTCTTCGTAAAACGGTTCTTCTATATGTTAGATTAAGCAAGAGTGAGTACTTATGTACCCAGCAAGACACTTATAAACATGATATGAATATTATTATGGAAGCTTAAATATCATCATCTTAAGCATAAGGTATTGAATTAAAGAGAAAGTAAGCACAACAACAAAATCTCATTATTTTCATTAATATTTTATGTTTAAAACTACTTATACGTCAGGAGTAGGAATCACCCTTATGACACAACTCCAGAACCGGGAGTACGGCACATTCGAATGATTTAATTCACCTCTGCGGAGACTGTCCAGCTTTACCCACACGATGAGAACAATTTGCAAGGCTGAAAACACCATAGCCGTTCGAGAGTCCCACTTACTAC] [+] EMBL CF327629 [TTTTTTTACATAACAACTTTCGATTAATTATACAAATTTGATCATACAAACTAATTATACAACTGTTAATGGTTTTAAAGATCCAAACTATTACAACCTTATTTGAAAGTATAAAGAAAAACCCAAAGCTACTAAACTTCACAGGTATAAGCTTGAGTGGAGACTAAGCCTAGAAAAACTCGTCGTTGAAGTAGGCCTTGCTACCTTCTGGAACTTCTTCGTAAAACGGTTCTTCTATATGTTAGATTAAGCAAGAGTGAGTACTTATGTACCCAGCAAGACACTTATAAACATGATATGAATATTATTATGGAAGCTTAAATATCATCATCTTAAGCATAAGGTATTGAATTAAAGAGAAAGTAAGCACAACAACAAAATCTCATTATTTTCATTAATATTTTATGTTTAAAACTACTTATACGTCAGGAGTAGGAATCACCCTTATGACACAACTCCAGAACCGGGAGTACGGCACATTCGAATGATTTAATTCACCTCTGCGGAGACTGTCCAGCTTTACCCACACGATGAGAACAATTTGCAAGGCTGAAAACACCATAGCCGTTCGAGAGTCCCACTTACTAC] [+] EMBL CF332235 [ TTTTTTACATAACAACTTTCGATTAATTATACAAATTTGATCATACAAACTAATTATACAACTGTTAATGGTTTTAAAGATCCAAACTATTACAACCTTATTTGAAAGTATAAAGAAAAACCCAAAGCTACTAAACTTCACAGGTGTAAGCTTGAGTGGAGACTAAGCCTAAAAAAACTCGTCGTTGAAGTAGGCCTTGCTACCTTCTGGAACTTCTTCGTAAAACGGTTCTTCTATATGTTAGATTAAGCAAGAGTGAGTACTTATGTACCCAGCAAGACACTTATAAACATGATATGAATATTATTATGGAAGCTTAAATATCATCATCTTAAGCATAAGGTATTGAATTAAAGAGAAAGTAAGCACAACAACAAAATCTCATTATTTTCATTAATATTTTATGTTTAAAACTACTTATACGTCAGGAGTAGGAATCACCCTTATGACACAACTCCAGAACCGGGAGTACGGCACATTCGAATGATTTAATTCACCTCTGCGG ] consensusID : consensus_12953#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence [AAGCTCTCTCTCTCTCTCCCTCTCTCCAATCCATCACCGCCGGCCGCCGTTCTAAGTTCCCCCACAACCGGCCGTCGGCTTTGTTTGTGCGCCGCCTCCAGCCGCCGTCGCCGTCGCGCGTCAGCCGCCGGAGCCGCCCCTTCCTTCCCCTCACCGCGCCCTCTCCCTCCTCTCTCTGTGCCTGTGAAGAAGAAGGGAGGAAACAAGAAGAAGAAAGGAGGGGAGAAGAAGAAGAAATAAAGGAAAAAGAAGAGGACTGACAAGCGGGCCCCACTGCACAACAATCCAGAAGATCCGGTTAACATCACAGGAGCTGACGTGGACACAGCCGACTACGCTAAAGCCCCTGAAGATTTCGAGGTGCAAGAAGAACCGTATTACGAAGAAGTTCCAGAAGGTAGCGAGGCCTACTTCAATGATGAGTTTTTCTAGGCTTAGTCTCCACTCAAGCTTATGTCTGTGAAGTTTAGTAGCTTTGGGTTTTTCTTTGTACTTTCAAATAAGGTTGTAATAGTTTAGATCTTTAAAACCATTAACAGTTGTATAATTAGTTTGTATGAACAAATTTGTATAATTAATCAGAA] [+] EMBL AK111135 [AAGCTCTCTCTCTCTCTCCCTCTCTCCAATCCATCACCGCCGGCCGCCGTTCTAAGTTCCCCCACAACCGGCCGTCGGCTTTGTTTGTGCGCCGCCTCCAGCCGCCGTCGCCGTCGCGCGTCAGCCGCCGGAGCCGCCCCTTCCTTCCCCTCACCGCGCCCTCTCCCTCCTCTCTCTGTGCCTGTGAAGAAGAAGGGAGGAAACAAGAAGAAGAAAGGAGGGGAGAAGAAGAAGAAATAAAGGAAAAAGAAGAGGACTGACAAGCGGGCCCCACTGCACAACAATCCAGAAGATCCGGTTAACATCACAGGAGCTGACGTGGACACAGCCGACTACGCTAAAGCCCCTGAAGATTTCGAGGTGCAAGAAGAACCGTATTACGAAGAAGTTCCAGAAGGTAGCGAGGCCTACTTCAATGATGAGTTTTTCTAGGCTTAGTCTCCACTCAAGCTTATGTCTGTGAAGTTTAGTAGCTTTGGGTTTTTCTTTGTACTTTCAAATAAGGTTGTAATAGTTTAGATCTTTAAAACCATTAACAGTTGTATAATTAGTTTGTATGAACAAATTTGTATAATTAATCAGAA] consensusID : consensus_12953#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence [ACCCTCCCCGGGTGCGCGTTGCTCGGGAACACCATCTCCAACCGGCGTTCTCACCTCCAGGCCACCGGAGAGCCGGCGCCTTGCTTGCCCTCCTCTCTGTTACCTCTCAGCTGCCAAACAGAAGAAAAAAAAAAGAACGAGAGGAAGAACAGGAAGGAGAAGGCATTGACAAGTTTTATTTGCTATCTTTTACGTATACGTACGTTAGACAATACAGAAGATCTCATCGACATCACAGGAGCTGGCGTGGATCCAGCCGACTACGCTGAAGCCTTCGAAAGTTTCAAGGCACAAGAAGAACCGTGTTATGAAGAAGTCCCAGAAGGTAGCGAGGCCTACTACAACGACGAGTTTTTTTAGGCTTAATCTATACTCAAGCTTATGCCTGTGAAGTTTAGTAGCTTTGGGTTTTTCTTTGTACTTTCAAATAAGGTTGTAATAGTTTGTATCTTTAAAACCATTAACAGTTGTATAATTAGTTTGCATGAACAAATTTGTATAATTAATCGAAAAAAAAAAAAAAAAGACACTGTCATGCCGTTCG] [-] EMBL CF318505 [ACCCTCCCCGGGTGCGCGTTGCTCGGGAACACCATCTCCAACCGGCGTTCTCACCTCCAGGCCACCGGAGAGCCGGCGCCTTGCTTGCCCTCCTCTCTGTTACCTCTCAGCTGCCAAACAGAAGAAAAAAAAAAGAACGAGAGGAAGAACAGGAAGGAGAAGGCATTGACAAGTTTTATTTGCTATCTTTTACGTATACGTACGTTAGACAATACAGAAGATCTCATCGACATCACAGGAGCTGGCGTGGATCCAGCCGACTACGCTGAAGCCTTCGAAAGTTTCAAGGCACAAGAAGAACCGTGTTATGAAGAAGTCCCAGAAGGTAGCGAGGCCTACTACAACGACGAGTTTTTTTAGGCTTAATCTATACTCAAGCTTATGCCTGTGAAGTTTAGTAGCTTTGGGTTTTTCTTTGTACTTTCAAATAAGGTTGTAATAGTTTGTATCTTTAAAACCATTAACAGTTGTATAATTAGTTTGCATGAACAAATTTGTATAATTAATCGAAAAAAAAAAAAAAAAGACACTGTCATGCCGTTCG] consensusID : consensus_12953#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [CTGTCATGATTTTTACATTACTTAAAGTCCTTATTACTTCTGATCTGTAATGGCCCTCTGAAATCTTTATCCAACGATTCAATGTTAATGTTGTTTGTGCGACCTAATTATGAGTTTTACATTACTTCAAGTCCTTGTTATTTCTGATTTTTACATTACTTAAGTCATTATTTCAAAATTGTGCCACCTTACCATTTCATTTTTGTTTTATCAGAAGCGCATAGTAGATTGTACAGACACTTTTGATAATACTCTGCAGTAAACAATTTCATGTAACATAAGTGAAAGAGCATCTATGCCCCTAGTGGGTTTTGGTTTATTGATGACAAACGATTAAGGGACTAATGCACTTATTGAGTGTATAAGCAAGTGATTAGTCCGATGAAGAAGCTAGGAAATGGACTTATCGATGGATGGGAATTAAAGAGAAGATATTGAAGATGCGGGTATGAAGTGA] [+] EMBL CA998843 [CTGTCATGATTTTTACATTACTTAAAGTCCTTATTACTTCTGATCTGTAATGGCCCTCTGAAATCTTTATCCAACGATTCAATGTTAATGTTGTTTGTGCGACCTAATTATGAGTTTTACATTACTTCAAGTCCTTGTTATTTCTGATTTTTACATTACTTAAGTCATTATTTCAAAATTGTGCCACCTTACCATTTCATTTTTGTTTTATCAGAAGCGCATAGTAGATTGTACAGACACTTTTGATAATACTCTGCAGTAAACAATTTCATGTAACATAAGTGAAAGAGCATCTATGCCCCTAGTGGGTTTTGGTTTATTGATGACAAACGATTAAGGGACTAATGCACTTATTGAGTGTATAAGCAAGTGATTAGTCCGATGAAGAAGCTAGGAAATGGACTTATCGATGGATGGGAATTAAAGAGAAGATATTGAAGATGCGGGTATGAAGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12953#0 CTGAAGGAGTAGAAAACACAAACCGAGCTCCTCAAGCTCTCTCTCTTTCTCTCCCATGTC 60 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 ------------------------------------------------------------ consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 CGGCCATTAGTGCCACCGGCCGATCTCCCTCCCCGGAGCTTCGCAAGCCAAGTCCTTGCG 120 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 ------------------------------------------------------------ consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 CCACCAACTCCGCCTCGCCGAGGTGATTCTATTTTTCCCCTTTCCCCTTTCCCTCCACCT 180 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 ------------------------------------------------------------ consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 TAAGATAAGCCGCCACCACCACCTTCTCTTATTGCCGGAGCTGAGCTCTTGTCGCCACTG 240 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 ------------------------------------------------------------ consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 TTCCGGCCATCCCTCTCTCTCCCTCCGCCTTCCACCACCCTCCCCGGGTGCGCGTCGCTC 300 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 ------------------------------------------------------------ consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 GGGAACACCATCTCCTACCGGCGTTCTCACCTCCCGGCCACCGGAGAGCCGGTGCCTTGC 360 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 ------------------------------------------------------------ consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 TTGCCCTCCTCTCTGTTACCTCTCGGCTGCCAAACAGAAGAAGAAAAAAAGAAGAACGAG 420 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 ------------------------------------------------------------ consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 AGGAAGAAGAAGAGGAAGGAGAAGGCATTGACAAGTAATAATAACTCCCTTTTTCTTTTA 480 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 ------------------------------------------------------------ consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 TTTGTTTTTCAATCTTTAAGAGCTCATATCTCTTCAACCACAAATCCAATTCCAAGAATT 540 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 ------------------------------------------------------------ consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 CTTTGATCTAAATTCATCCAATTTCAAATCCTTTATTTTGATACCAAATTTCCTATTTTT 600 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 ------------------------------------------------------------ consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 AAAATTTTAATTAAAATTCTTTATTTAAAAACCTTTTCCTTATTTATTTATTTACTTTCT 660 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 ------------------------------------------------------------ consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 AATTCTAAATTATTTTAATTAACCTTTAAAAAATATATATTTTAAATTTATTTGATTTAC 720 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 ------------------------------------------------------------ consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 TTTATATCCCTTTAATTTTAAATTTCTTGTTTGAAAAACCTTTTTAAAATTTAATTTTCC 780 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 ------------------------------------------------------------ consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 TTTAATTTCTTTAAAAGCCATTTCCTTTCAAAATTCAAATATCTTTTGACCTTTTGCTTT 840 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 ------------------------------------------------------------ consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 TGCCTCTCTTCATGCTCCAATTTTGTTATTTTCTTTTACCGTTTATCTGTAGTACTTTCC 900 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 ------------------------------------------------------------ consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 CTTATAGGTTTTATTTGCTATCTTTTACGTATACGTACGTTAGACAATACAGAAAATCTC 960 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 ------------------------------------------------------------ consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 ATCAACATCACAGGAGCTGACGTGGATCCAGCCGACTACGCTGAAGCCTTTGAAAGTTTC 1020 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 ------------------------------------------------------------ consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 AAGGCTCAAGGCAAGACACAATTAAAATTTTGACCACATGAAATAATCAACCCTCATGTT 1080 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 -------------------------------------------------------CGAGC 5 consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 TACTTTATGCATAAGTTAATCATATGAATAACATTGTGGTGGCTTAAAATGATATTTAAT 1140 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 TCCTCAAGCTCTCTCTCTTTCTCTCCCATGTCCGGCCATTAGTGCCACCGGCAGATCTCC 65 consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 ACTTTTAAGCATTGTTATATGAGATTATGGAAAGGTATACTGAACATCATTTTATGTGGT 1200 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 CTCACCGGAGTTTCGCAAGCCAAGCCCTTGCGCCACCAACTCCGCCTCGCCGAGGTGATT 125 consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 TTATTATTCAAACATCTTTACAAACTTAGGAATCCGGTTAAAATGGGTATTTTTGAATGT 1260 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 CCATTTTTCCCATTTCCCCTTTTCCTCCACCTTGAGATAAGCCGCCGCCACCACCACCTT 185 consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 TATATATAATGAAGTTTGTTGGTGTGGGGAGTTTGGAAAGTTTTGGGTGGTTTAACTGGA 1320 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 CTCTTATCGCCGGAGCTGAGCTCTTGTCGCCGCTGTTCCGGCCACCCCTCTCTCTCCCTC 245 consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 -----------AAGCTCTCTCTCTCTCTCCCTCTCTCCAATCCATCACCGCCGGCCGCCG 49 consensus_12953#2 -----------------------------------------------------TTTTTTT 7 consensus_12953#0 TTATAATTACCCCCTTATACCATGGGAAATGACATAGTTGTGTCCATCCACATAACCAGG 1380 consensus_12953#5 ----------------------------CTGTCATGATTTT-TACATT-ACTTAA---AG 27 consensus_12953#1 CGCCTTCCACCACC--CTCCCCGGGTGCGCGTTGCTCGGGAACACCATCTCCAACCGGCG 303 consensus_12953#4 -----------ACC--CTCCCCGGGTGCGCGTTGCTCGGGAACACCATCTCCAACCGGCG 47 consensus_12953#3 TTCTAAGTTCCCCC--ACAACCGGCCGTCGGCTTTGTTTGTGCGCCGCCTCCAGCCGCCG 107 consensus_12953#2 ACATAACAACTTTCGATTAATTATACAAATTTGATCATACAAACTAATTATACAAC--TG 65 * consensus_12953#0 TAATTATTGGACTTAGCCTAGTACATTGTCCCACTATATGAAAGA--------CTGTTGG 1432 consensus_12953#5 TCCTTATTACTTCTGATCT---GTAATGGCCCTCTG---AAATCT--------TTATCCA 73 consensus_12953#1 TTCTCACCTCCAGGCCACCGGAGAGCCGGCGCCTTGCTTGCCCTC--------CTCTCTG 355 consensus_12953#4 TTCTCACCTCCAGGCCACCGGAGAGCCGGCGCCTTGCTTGCCCTC--------CTCTCTG 99 consensus_12953#3 TCGCCGTCGCGCGTCAGCCGCCGGAGCCGCCCCTTCCTTCCCCTCACCGCGCCCTCTCCC 167 consensus_12953#2 TTAATGGTTTTAAAGATCCAAACTATTACAACCTTATTTGAAAGT--------ATAAAGA 117 * * * * * consensus_12953#0 GTGGCTCTATGAGCGGTTGGTGTGAACATGCGTAAGGAGTTAGGGGGCAGTGTTTCATAA 1492 consensus_12953#5 ACGATTCAATG-----TTAATGT---TGTTTGTGCG-ACCTAATTATGAGTTTTACATTA 124 consensus_12953#1 TTACCTCTCAG---CTGCCAAACAGAAGAAAAAAAA-A-GAACGAGAGGAAGAACAGGAA 410 consensus_12953#4 TTACCTCTCAG---CTGCCAAACAGAAGAAAAAAAA-AAGAACGAGAGGAAGAACAGGAA 155 consensus_12953#3 TCCTCTCTCTGTGCCTGTGAAGAAGAAGGGAGGAAACAAGAAGAAGAAAGGAGGGGAGAA 227 consensus_12953#2 AAAACCCAAAG--CTACTAAACTTCACAGGTATAAGCTTGAGTGGAGACTAAGCCTAGAA 175 * * * consensus_12953#0 CAGTAGGTCCCGTGAAAGTGTGACGATATAGTAACCTTGCTTTAGGCCTGGCAAGAGTTC 1552 consensus_12953#5 CTTCAAGTCCTTGTTATTTCTGATTTTTACATTACTTAAGTCATTATTTCAAAATTGTGC 184 consensus_12953#1 GGAGAAGGCATTGACAA------------------------------------ACAATAC 434 consensus_12953#4 GGAGAAGGCATTGACAAGTTTTATTTGCTATCTTTTACGTATACGTACGTTAGACAATAC 215 consensus_12953#3 GAAGAAGAAATAAAGGAAAAAGAAGAGGACTGACAAGCGGGCCCCACTGCACAACAATCC 287 consensus_12953#2 AAACTCGTCGTTGAAGTAGGCCTTGCTACCTTCTGGAACTTCTTCGTAAAACGGTTCTTC 235 * * * consensus_12953#0 GACCACTATGATGAGCCAAGATTCTACTGTGCAGTAACTAGTAGTAAGT---GGGACCT- 1608 consensus_12953#5 CACCTTACCATTTCATTTTTGTTTTATCA-GAAGCGCATAGTAGATTGTACAGACACTT- 242 consensus_12953#1 AGAAGATCTCATCGACATCACAGGAGCTGGCGTGGATCCAGCCGACTACGCTGAAGCCT- 493 consensus_12953#4 AGAAGATCTCATCGACATCACAGGAGCTGGCGTGGATCCAGCCGACTACGCTGAAGCCT- 274 consensus_12953#3 AGAAGATCCGGTTAACATCACAGGAGCTGACGTGGACACAGCCGACTACGCTAAAGCCC- 346 consensus_12953#2 TATATGTTAGATTAAGCAAGAGTGAGTACTTATGTACCCAGCAAGACACTTATAAACATG 295 * * ** * consensus_12953#0 ---TCGA-ACGGCTCTGGTG---TCCTCAGCCT--TGCAAAGTATTTG----------AA 1649 consensus_12953#5 ---TTGATAATACTCTGCAG---TAAACAATTTCATGTAACATAAGTG----------AA 286 consensus_12953#1 ---TCGAAAGTTTCAAGGCA---CAAGAA---CCGTGTTATGAAGAAGTC------CCAG 538 consensus_12953#4 ---TCGAAAGTTTCAAGGCA---CAAGAAGAACCGTGTTATGAAGAAGTC------CCAG 322 consensus_12953#3 ---CTGAAGATTTCGAGGTG---CAAGAAGAACCGTATTACGAAGAAGTT------CCAG 394 consensus_12953#2 ATATGAATATTATTATGGAAGCTTAAATATCATCATCTTAAGCATAAGGTATTGAATTAA 355 * * * * * * * * consensus_12953#0 AGAGCATCTATGC-CCCTAGTGGGTTTTGGTT-TATTGATGACAAATGATTAAGGGAC-T 1706 consensus_12953#5 AGAGCATCTATGC-CCCTAGTGGGTTTTGGTT-TATTGATGACAAACGATTAAGGGAC-T 343 consensus_12953#1 AAGGTAGCGAGGC-CTACTACAACGACGAGTT-TTTCTAGGCTTAATCTATACTCAAG-C 595 consensus_12953#4 AAGGTAGCGAGGC-CTACTACAACGACGAGTT-TTTTTAGGCTTAATCTATACTCAAG-C 379 consensus_12953#3 AAGGTAGCGAGGC-CTACTTCAATGATGAGTT-TTTCTAGGCTTAGTCTCCACTCAAG-C 451 consensus_12953#2 AGAGAAAGTAAGCACAACAACAAAATCTCATTATTTTCATTAATATTTTATGTTTAAAAC 415 * * * * ** * ** * * * * * consensus_12953#0 ACTGCACTTATTAAGTGTCTAAGC---AAGTGATTAGTCCGATGAAGAAGCTAGGAAATG 1763 consensus_12953#5 AATGCACTTATTGAGTGTATAAGC---AAGTGATTAGTCCGATGAAGAAGCTAGGAAATG 400 consensus_12953#1 -TTATGCCTGTGAAGTTTAGTAGCTTTGGGTTTTTCTTTGTACTTTCAAATAAGGTTGTA 654 consensus_12953#4 -TTATGCCTGTGAAGTTTAGTAGCTTTGGGTTTTTCTTTGTACTTTCAAATAAGGTTGTA 438 consensus_12953#3 -TTATGTCTGTGAAGTTTAGTAGCTTTGGGTTTTTCTTTGTACTTTCAAATAAGGTTGTA 510 consensus_12953#2 TACTTATACGTCAGGAGTAGGAATCA-CCCTTATGACACAACTCCAGAACCGGGAGTACG 474 * * * * * * ** * consensus_12953#0 G-ACTTATCGATGGATGAGA--ATTAAAGAGAAGATATTGAAGATGCGGGTATGAAGTGA 1820 consensus_12953#5 G-ACTTATCGATGGATGGGA--ATTAAAGAGAAGATATTGAAGATGCGGGTATGAAGTGA 457 consensus_12953#1 A-TAGTTTGTATCTTTAAAACCATTAACAGTTGTATAATTAGTTTGCATGAACAAATTTG 713 consensus_12953#4 A-TAGTTTGTATCTTTAAAACCATTAACAGTTGTATAATTAGTTTGCATGAACAAATTTG 497 consensus_12953#3 A-TAGTTTAGATCTTTAAAACCATTAACAGTTGTATAATTAGTTTGTATGAACAAATTTG 569 consensus_12953#2 GCACATTCGAATGATTTAATTCACCTCTGCGGAGACTGTCCAGCTTTACCCACACGATGA 534 * ** * * * * * * * consensus_12953#0 CTACCTATGGCAAGACGGTGAAGCGCAAGCGACGCTCAGTTGCGATGGACCATACGGTGG 1880 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 TATAATTAATCGAAAGCTGTTCTGTAAAAAAAAAAA------------------------ 749 consensus_12953#4 TATAATTAATCGAAAAAAA----AAAAAAAAAGACACTGTCATGCCGTTCG--------- 544 consensus_12953#3 TATAATTAATCAGAA--------------------------------------------- 584 consensus_12953#2 GAACAATTTGCAAGGCTGA-AAACACCATAGCCGTTCGAGAGTCCCACTTACTAC----- 588 consensus_12953#0 TAAAGGGCAAGCAAGGGGGTTGGCGCCGACGAACCGAAACCGGTGGTGAAGGGCGAGTGA 1940 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 ------------------------------------------------------------ consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 AGACTGTGTCGTGATGAACCGTGCGAGGCCATTTGAAGCCATGGATTATCCACATCAATC 2000 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 ------------------------------------------------------------ consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 ATTTGAGAAATGGAAGATGAAATGTCAAAGATCAAGAAGATGAGATCGTCCCGATGATCA 2060 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 ------------------------------------------------------------ consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 AATGACCTTGACGTTGGTAACCCTCCAAGAGAAAAAACAATATGGTGTGAAGGTACTCCT 2120 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 ------------------------------------------------------------ consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 ATTGGTATAACTTTGCCTTTCAAATTTGAGTTTAGGAGGCCGTACTATTAAGAGAGATAC 2180 consensus_12953#5 ------------------------------------------------------------ consensus_12953#1 ------------------------------------------------------------ consensus_12953#4 ------------------------------------------------------------ consensus_12953#3 ------------------------------------------------------------ consensus_12953#2 ------------------------------------------------------------ consensus_12953#0 CACATGCATA 2190 consensus_12953#5 ---------- consensus_12953#1 ---------- consensus_12953#4 ---------- consensus_12953#3 ---------- consensus_12953#2 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||