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Oryza sativa
cluster # 12955 cluster # 12955       Sequences # 11       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12955#0 length = 1605 sequences # 10  
consensus_12955#1 length = 525 sequences # 1  

consensusID : consensus_12955#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1605
fasta sequence
                              [CGAGTTAGCGAGCAGAGATCCACGGCCCGCAGCGGCGGCGGCGGCGGCGGCGGCC-GAAGCCCA-TC-TGGTTACGCGAGGGAGATGGCAGCGGCGGCGGGAGGAGTCGCCGGCGAGCCGTCGGGGACGAGGACGAAGCAGCTTAAGGTCGCCGTGATCCACCCCGATCTCGGGATAGGTGGTGCTGAGAGATTGATAGTCGATGCGGCTTGTCAGCTTGCGGTCCATGGTCATGATGTTCATGTTTTCACATCACATCATGACAAAAA-CCGATGCTTTGAAGAGACTGTTTCTGGTCCATTTGAAGTTAAAGTATATGGAGATTTCTTGCCTCGCCATATTTTTTACCGCTTCCACGCTATCTGTGCATATCTTCGCTGCATTTTTGTTGCAATGTGTGTGCTACT-TTGGTGGCCCTCATTTGACATCATATTAGTAGACCAGGTTTCGGTTGTGATTCCACTGCTTAAACTGAAGGCAAAATCCAAGATAGTATTTTATTGTCACTTTCCTGATATGTTGCTTGCTCAACATACTACCATGCTTCGGAGGTTGTATCGCAAGCCAATTGACATGATTGAAGAAACAACTACTGGTATGGCAGATTTGATTCTAGTAAACAGCAAGTTCACTGCAACAACATTTGCCAGGACCTTTTGCAGCCTTCATGCTAGAGGAGTCGAGCCTGCTGTTCTATATCCAGCTGTCTCTGTTGAACAGTTTCAGGAACCTCATGCTTATAAGTTGAATTTCCTCTCAATTAACCGGTTTGAGAG-AAAAAAGAATCTTGGTCTTGCCATTTCAGCATTTTCTCTGCTTCGCTCTGTTGCTTCTATGCTACCTGGTGATGCTCGACAGGAAGTAACCTTAACAGTAGCAGGTGGATATGATAAGCGTCTCAGAGAAAATGTTGAATACCTTGAGGAGCTCAAAAGATTGGCAGCGAGTGAAGGGGTTTCTGAACATGTCAAATTTGTGACAT-CTTGTTCAACTTCT-GAAAGGA-ACGAACTTCTCTCCAACTGCCTTTGTGTGTTATACACTCCAAAGGATGAACATTTCGGTATTGTTCCTCTGGAAGCCATGGCCGCATATAAACC-TGTAATTGCATGCAACAGTGGTGGTCCAGTGGAAACAGTCATAAATGACGAGACAGGGTTTCTCTGTGAGCCCTCTGCCCCTGAATTTTCAAAAGCCATGCTGAAGCTCGTGAACGATCACGATCTAGCAGTTAAGATGGGTAAACAAGCAAGGGGCCATGTTGTGCAGAAGTTCTCAACCAAGACATTTGGTGACCTTCTGAACAGCTATGTCCTTAATGTGTACCATCAGAGGATTGAGTGATCCCCAATTCGGTGTCGGCAATGCCGTGGAACACTTGGAATAGACCATCATTTTCATGTTTTTTCCTTTTCTTTTGTTACTTCTGACTTCGATGTACACGCATGCGATAGAGTATTATATACGGATGAATAGTGAAAACGACTTTGTAATGTTACCA-TTTGTGGCAATGA-CAGGAAAAAATATATATTTGGGCCGTCTGAAACAGAGCTGAAGTTTACAATCTGATTGTCTTTCCCTGGAAAGAGATATCAGGTACAAAAAAAAGGA]

[+] EMBL AK100053             [CGAGTTAGCGAGCAGAGATCCACGGCCCGCAGCGGCGGCGGCGGCGGCGGCGGCC GAAGCCCA TC TGGTTACGCGAGGGAGATGGCAGCGGCGGCGGGAGGAGTCGCCGGCGAGCCGTCGGGGACGAGGACGAAGCAGCTTAAGGTCGCCGTGATCCACCCCGATCTCGGGATAGGTGGTGCTGAGAGATTGATAGTCGATGCGGCTTGTCAGCTTGCGGTCCATGGTCATGATGTTCATGTTTTCACATCACATCATGACAAAAA CCGATGCTTTGAAGAGACTGTTTCTGGTCCATTTGAAGTTAAAGTATATGGAGATTTCTTGCCTCGCCATATTTTTTACCGCTTCCACGCTATCTGTGCATATCTTCGCTGCATTTTTGTTGCAATGTGTGTGCTACT TTGGTGGCCCTCATTTGACATCATATTAGTAGACCAGGTTTCGGTTGTGATTCCACTGCTTAAACTGAAGGCAAAATCCAAGATAGTATTTTATTGTCACTTTCCTGATATGTTGCTTGCTCAACATACTACCATGCTTCGGAGGTTGTATCGCAAGCCAATTGACATGATTGAAGAAACAACTACTGGTATGGCAGATTTGATTCTAGTAAACAGCAAGTTCACTGCAACAACATTTGCCAGGACCTTTTGCAGCCTTCATGCTAGAGGAGTCGAGCCTGCTGTTCTATATCCAGCTGTCTCTGTTGAACAGTTTCAGGAACCTCATGCTTATAAGTTGAATTTCCTCTCAATTAACCGGTTTGAGAG AAAAAAGAATCTTGGTCTTGCCATTTCAGCATTTTCTCTGCTTCGCTCTGTTGCTTCTATGCTACCTGGTGATGCTCGACAGGAAGTAACCTTAACAGTAGCAGGTGGATATGATAAGCGTCTCAGAGAAAATGTTGAATACCTTGAGGAGCTCAAAAGATTGGCAGCGAGTGAAGGGGTTTCTGAACATGTCAAATTTGTGACAT CTTGTTCAACTTCT GAAAGGA ACGAACTTCTCTCCAACTGCCTTTGTGTGTTATACACTCCAAAGGATGAACATTTCGGTATTGTTCCTCTGGAAGCCATGGCCGCATATAAACC TGTAATTGCATGCAACAGTGGTGGTCCAGTGGAAACAGTCATAAATGACGAGACAGGGTTTCTCTGTGAGCCCTCTGCCCCTGAATTTTCAAAAGCCATGCTGAAGCTCGTGAACGATCACGATCTAGCAGTTAAGATGGGTAAACAAGCAAGGGGCCATGTTGTGCAGAAGTTCTCAACCAAGACATTTGGTGACCTTCTGAACAGCTATGTCCTTAATGTGTACCATCAGAGGATTGAGTGATCCCCAATTCGGTGTCGGCAATGCCGTGGAACACTTGGAATAGACCATCATTTTCATGTTTTTTCCTTTTCTTTTGTTACTTCTGACTTCGATGTACACGCATGCGATAGAGTATTATATACGGATGAATAGTGAAAACGACTTTGTAATGTTACCA TTTGTGGCAATGA CAGGAAAAAATATATATTT                                                                              ]
[+] EMBL AK061833             [ GAGTTAGCGAGCAGAGATCCACGGCCCGCAGCGGCGGCGGCGGCGGCGGCGGCC GAAGCCCA TC TGGTTACGCGAGGGAGATGGCAGCGGCGGCGGGAGGAGTCGCCGGCGAGCCGTCGGGGACGAGGACGAAGCAGCTTAAGGTCGCCGTGATCCACCCCGATCTCGGGATAGGTGGTGCTGAGAGATTGATAGTCGATGCGGCTTGTCAGCTTGCGGTCCATGGTCATGATGTTCATGTTTTCACATCACATCATGACAAAAA CCGATGCTTTGAAGAGACTGTTTCTGGTCCATTTGAAGTTAAAGTATATGGAGATTTCTTGCCTCGCCATATTTTTTACCGCTTCCACGCTATCTGTGCATATCTTCGCTGCATTTTTGTTGCAATGTGTGTGCTACT TTGGTGGCCCTCATTTGACATCATATTAGTAGACCAGGTTTCGGTTGTGATTCCACTGCTTAAACTGAAGGCAAAATCCAAGATAGTATTTTATTGTCACTTTCCTGATATGTTGCTTGCTCAACATACTACCATGCTTCGGAGGTTGTATCGCAAGCCAATTGACATGATTGAAGAAACAACTACTGGTATGGCAGATTTGATTCTAGTAAACAGCAAGTTCACTGCAACAACATTTGCCAGGACCTTTTGCAGCCTTCATGCTAGAGGAGTCGAGCCTGCTGTTCTATATCCAGCTGTCTCTGTTGAACAGTTTCAGGAACCTCATGCTTATAAGTTGAATTTCCTCTCAATTAACCGGTTTGAGAGAAAAAAAGAATCTTGGTCTTGCCATTTCAGCATTTTCTCTGCTTCGCTCTGTTGCTTCTATGCTACCTGGTGATGCTCGACAGGAAGTAACCTTAACAGTAGCAGGTGGATATGATAAGCGTCTCAGAGAAAATGTTGAATACCTTGAGGAGCTCAAAAGATTGGCAGCGAGTGAAGGGGTTTCTGAACATGTCAAATTTGTGACAT CTTGTTCAACTTCT GAAAGGA ACGAACTTCTCTCCAACTGCCTTTGTGTGTTATACACTCCAAAGGATGAACATTTCGGTATTGTTCCTCTGGAAGCCATGGCCGCATATAAACC TGTAATTGCATGCAACAGTGGTGGTCCAGTGGAAACAGTCATAAATGACGAGACAGGGTTTCTCTGTGAGCCCTCTGCCCCTGAATTTTCAAAAGCCATGCTGAAGCTCGTGAACGATCACGATCTAGCAGTTAAGATGGGTAAACAAGCAAGGGGCCATGTTGTGCAGAAGTTCTCAACCAAGACATTTGGTGACCTTCTGAACAGCTATGTCCTTAATGTGTACCATCAGAGGATTGAGTGATCCCCAATTCGGTGTCGGCAATGCCGTGGAACACTTGGAATAGACCATCATTTTCATGTTTTTTCCTTTTCTTTTGTTACTTCTGACTTCGATGTACACGCATGCGATAGAGTATTATATACGGATGAATAGTGAAAACGACTTTGTAATGTTACCA TTTGTGGCAATGA CAGGAAAAAATATATATTT                                                                              ]
[+] EMBL AK098964             [     TAGCGAGCAGAGATCCACGGCCCGCAGCGGCGGCGGCGGCGGCGGCGGCC GAAGCCCA TC TGGTTACGCGAGGGAGATGGCAGCGGCGGCGGGAGGAGTCGCCGGCGAGCCGTCGGGGACGAGGACGAAGCAGCTTAAGGTCGCCGTGATCCACCCCGATCTCGGGATAGGTGGTGCTGAGAGATTGATAGTCGATGCGGCTTGTCAGCTTGCGGTCCATGGTCATGATGTTCATGTTTTCACATCACATCATGACAAAAA CCGATGCTTTGAAGAGACTGTTTCTGGTCCATTTGAAGTTAAAGTATATGGAGATTTCTTGCCTCGCCATATTTTTTACCGCTTCCACGCTATCTGTGCATATCTTCGCTGCATTTTTGTTGCAATGTGTGTGCTACT TTGGTGGCCCTCATTTGACATCATATTAGTAGACCAGGTTTCGGTTGTGATTCCACTGCTTAAACTGAAGGCAAAATCCAAGATAGTATTTTATTGTCACTTTCCTGATATGTTGCTTGCTCAACATACTACCATGCTTCGGAGGTTGTATCGCAAGCCAATTGACATGATTGAAGAAACAACTACTGGTATGGCAGATTTGATTCTAGTAAACAGCAAGTTCACTGCAACAACATTTGCCAGGACCTTTTGCAGCCTTCATGCTAGAGGAGTCGAGCCTGCTGTTCTATATCCAGCTGTCTCTGTTGAACAGTTTCAGGAACCTCATGCTTATAAGTTGAATTTCCTCTCAATTAACCGGTTTGAGAG AAAAAAGAATCTTGGTCTTGCCATTTCAGCATTTTCTCTGCTTCGCTCTGTTGCTTCTATGCTACCTGGTGATGCTCGACAGGAAGTAACCTTAACAGTAGCAGGTGGATATGATAAGCGTCTCAGAGAAAATGTTGAATACCTTGAGGAGCTCAAAAGATTGGCAGCGAGTGAAGGGGTTTCTGAACATGTCAAATTTGTGACAT CTTGTTCAACTTCT GAAAGGA ACGAACTTCTCTCCAACTGCCTTTGTGTGTTATACACTCCAAAGGATGAACATTTCGGTATTGTTCCTCTGGAAGCCATGGCCGCATATAAACC TGTAATTGCATGCAACAGTGGTGGTCCAGTGGAAACAGTCATAAATGACGAGACAGGGTTTCTCTGTGAGCCCTCTGCCCCTGAATTTTCAAAAGCCATGCTGAAGCTCGTGAACGATCACGATCTAGCAGTTAAGATGGGTAAACAAGCAAGGGGCCATGTTGTGCAGAAGTTCTCAACCAAGACATTTGGTGACCTTCTGAACAGCTATGTCCTTAATGTGTACCATCAGAGGATTGAGTGATCCCCAATTCGGTGTCGGCAATGCCGTGGAACACTTGGAATAGACCATCATTTTCATGTTTTTTCCTTTTCTTTTGTTACTTCTGACTTCGATGTACACGCATGCGATAGAGTATTATATACGGATGAATAGTGAAAACGACTTTGTAATGTTACCA TTTGTGGCAATGA CAGGAAAAAATATATATTT                                                                              ]
[+] EMBL C26729               [            CAGAGATCCACGGCCCGCAGC GCGCNGGCGCNGGCNGCGGCCANANGCCCAGTCTTGGTTACGCGAGGGAGATGGCAGCGGCGGCGNGAGGAGTCGCCGGCGAGCCGTCGGGGACGAGGACGAAGCAGCTTAAGGTCGCCGTGATCCACCCCGATCTCGGAATAGGTGGTGCTGAGAGATTGATAGTCGATGCGGCTTGTCAGCTTGCGGTCCATGGTCATGATGTTCATGTTTTCACATCACATCATGACAAAAACCCGATGCTTTGAAGAGACTGTTTCTGGTCCATTTGAAGTTAAAGTATATGGAGATTTCTTGCCTCGCCATATTTTTTACCGCTTCCACGCTATCTGTGCATATCTTCGCTGCATTTTTGTTGCAATGTGTGTGCTACTNTGGGTGGCCCTCATTTGACATCATATTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CA753654             [                    CACGGCCCGCAGCGGCGGCGGCGGCGGCGGCGGCC GAAGCCCA TC TGGTTACACGAGGGAGATGGCAGCGGCGGCGGGAGGAGTCGCCGGCGAGCCGTCGGGGACGGGGACGAAGCAGCTTAAGGTCGCCGTGATCCACCCCGATCTCGGGATAGGTGGTGCTGAGAGATTGATAGTCGATGCGGCTTGTCAGCTTGCGGTCCATGGTCATGATGTTCATGTTTTCACATCACATCATGACAAAAA CCGATGCTTTGAAGAGATTGTTTCTGGTCCATTTGAAGTTAAAGTATATGGAGATTTCTTGCCTCGCCATATTTTTTACCGCTTCCACGCTATCTGTGCATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB655851             [                     ACGGCCCGCAGCGGCGGCGGCGGCGGCGGCGGCC GAAGCCCA TC TGGTTACGCGAGGGAGATGGCAGCGGCGGCGGGAGGAGTCGCCGGCGAGCCGTCGGGGACGAGGACGAAGCAGCTTAAGGTCGCCGTGATCCACCCCGATCTCGGGATAGGTGGTGCTGAGAGATTGATAGTCGATGCGGCTTGTCAGCTTGCGGTCCATGGTCATGATGTTCATGTTTTCACATCACATCATGACAAAAA CCGATGCTTTGAAGAGACTGTTTCTGGTCCATTTGAAGTTAAAGTATATGGAGATTTCTTGCCTCGCCATATTTTTTACCGCTTCCACGCTATCTGTGCATATCTTCGCTGCATTTTTGTTGCAATGTGTGTGCTACT TTGGTGGCCCTCATTTGACATCATATTAGTAGACCAGGTTTCGGTTGTGATTCCACTGCTTAAACTGAAGGCAAAATCCAAGATAGTATTTTATTGTCACTTTCCTGATATGTTGCTTGCTCAACATACTACCATGCTTCGGAGGTTGTATCGCAAGCCAATTGACATGATTGAAGAAACAACTACTGGTATGGCAGATTTGATTCTAGTAAACAGCAAGTTCACTGCAACAACATTTGCCAGGACCTTTTGCAGCCTTCATGCTAGAGGAGTCGAGCCTGCTGTTCTATATCCAGCTGTCTCTGTTGAACAGTTTCAGGAACCTCATGCTTATAAGTTGAATTTCCTCTCAATTAACCGGTTTGAGAG AAAAAAGAATCTTGGTCTTGCCATTTCAGCATTTTCTCTGCTTCGCTCTGNTGCTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CA999680             [                                                                                                                                                                    CGATCTCGGGATAGGTGGTGCTGAGAGATTGATAGTCGATGCGGCTTGTCAGCTTGCGGTCCATGGTCATGATGTTCATGTTTTCACATCACATCATGACAAAAA CCGATGCTTTGAAGAGATTGTTTCTGGTCCATTTGAAGTTAAAGTATATGGAGATTTCTTGCCTCGCCATATTTTTTACCGCTTCCACGCTATCTGTGCATATCTTCGCTGCATTTTTGTTGCAATGTGTGTGCTACT TTGGTGGCCCTCATTTGACATCATATTAGTAGACCAGGTTTCGGTTGTGATTCCACTGCTTAAACTGAAGGCAAAATCCAAGATAGTATTTTATTGTCACTTTCCTGATATGTTGCTTGCTCAACATACTACCATGCTTCGGAGGTTGTATCGCAAGCCAATTGACATGATTGAAGAAACAACTACTGGTATGGCAGATTTGATTCTAGTAAACAGCAAGTTCACTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CB655852             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTGATGCTCGACAGGAAGTAACCTTAACAGTAGCAGGTGGATATGATAAGCGTCTCAGAGAAAATGTTGAATACCTTGAGGAGCTCAAAAGATTGGCAGCGAGTGAAGGGGTTTCTGAACATGTCAAATTTGTGACAT CTTGTTCAACTTCT GAAAGGA ACGAACTTCTCTCCAACTGCCTTTGTGTGTTATACACTCCAAAGGATGAACATTTCGGTATTGTTCCTCTGGAAGCCATGGCCGCATATAAACC TGTAATTGCATGCAACAGTGGTGGTCCAGTGGAAACAGTCATAAATGACGAGACAGGGTTTCTCTGTGAGCCCTCTGCCCCTGAATTTTCAAAAGCCATGCTGAAGCTCGTGAACGATCACGATCTAGCAGTTAAGATGGGTAAACAAGCAAGGGGCCATGTTGTGCAGAAGTTCTCAACCAAGACATTTGGTGACCTTCTGAACAGCTATGTCCTTAATGTGTACCATCAGAGGATTGAGTGATCCCCAATTCGGTGTCGGCAATGCCGTGGAACACTTGGAATAGACCATCATTTTCATGTTTTTTCCTTTTCTTTTGTTACTTCTGACTTCGATGTACACGCATGCGATAGAGTATTATATACGGATGAATAGTGAAAACGACTTTGTAATGTTACCA TTTGTGGCAATGA CAGGAAAAAATATATATTTGGGCCGTCTGAAACAGAGCTGAAGTTTACAATCTGATTGTCTTTCCCTGGAAAGAGATATCAGGTACAAAAAAAAGGA]
[+] EMBL BM038701             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             tTTTCTGAACATGTC AATTTGTGACATCCTTG TCNACTTCTGGAAAGGAGACGACTTTCTCTTC CCT CCTTTGTGTGTTATACACTCCAAAGGATGAACATTTCGGTATTGTTCCTCTGGAAGCCAT GCCGCATATAAACCGTGTAATTGCATGCAACAGTGGTGGTCCAGTGGAAACAGTCATAAATGACGAGACAGGGTTTCTCTGTGAGCCCTCTGCCCCTGAATTTTCAAAAGCCATGCTGAAGCTCGTGAACGATCACGATCTAGCAGTTAAGATGGGTAAACAAGCAAGGGGCCATGTTGTGCAGAAGTTCTCAACCAAGACATTTGGTGACCTTCTGAACAGCTATGTCCTTAATGTGTACCATCAGAGGATTGAGTGATCCCCAATTCGGTGTCGGCAATGCCGTGGAACACTTGGAATAGACCATCATTTTCATGTTTTTTCCTTTTCTTTTGTTACTTCTGACTTCGATGTACACGCATGCGATAGAGTATTATATACGGATGAATAGTGAAAACGACTTTGTAATGTTACCANTTTGTGGCCATGACCNGGAAAAAATATATAaaaaaaaaa                                                                        ]
[+] EMBL AU077942             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTCCAACTGCCTTTGTGTGTTATACACTCCAAAGGATGAACATTTCGGTATTGTTCCTCTGGAAGCCATGGCCGCATATAAACC TGTAATTGCATGCAACAGTGGTGGTCCAGTGGAAACAGTCATAAATGACGAGACAGGGTTTCTCTGTGAGCCCTCTGCCCCTGAATTTTCAAAAGCCATGCTGAAGCTCGTGAACGATCACGATCTAGCAGTTAAGATGGGTAAACAAGCAAGGGGCCATGTTGTGCAGAAGTTCTCAACCAAGACATTTGGTGNCCTTCTGAACAGCTATGTCCTTAATGTGTACCATCAGAGGATTGAGTGATCCCCAATTCGGTGTCGGCAATGCCGTGGAACACTTGGAATAGACCATCATTTTCATGTTTTTTCCTTTTCTTTTGTTACTTCTGACTTCGATGTACACGCATGCGATAGAGTATTATATACGGATGAATAGTGAAAACGACTTTGTAATGTTACCA TTTGTGGCAATGA CAGGAAAAAATATATATTTGGGCCGTCTGAAAaa                                                               ]


>consensus_12955#0 CGAGTTAGCGAGCAGAGATCCACGGCCCGCAGCGGCGGCGGCGGCGGCGGCGGCCGAAGC CCATCTGGTTACGCGAGGGAGATGGCAGCGGCGGCGGGAGGAGTCGCCGGCGAGCCGTCG GGGACGAGGACGAAGCAGCTTAAGGTCGCCGTGATCCACCCCGATCTCGGGATAGGTGGT GCTGAGAGATTGATAGTCGATGCGGCTTGTCAGCTTGCGGTCCATGGTCATGATGTTCAT GTTTTCACATCACATCATGACAAAAACCGATGCTTTGAAGAGACTGTTTCTGGTCCATTT GAAGTTAAAGTATATGGAGATTTCTTGCCTCGCCATATTTTTTACCGCTTCCACGCTATC TGTGCATATCTTCGCTGCATTTTTGTTGCAATGTGTGTGCTACTTTGGTGGCCCTCATTT GACATCATATTAGTAGACCAGGTTTCGGTTGTGATTCCACTGCTTAAACTGAAGGCAAAA TCCAAGATAGTATTTTATTGTCACTTTCCTGATATGTTGCTTGCTCAACATACTACCATG CTTCGGAGGTTGTATCGCAAGCCAATTGACATGATTGAAGAAACAACTACTGGTATGGCA GATTTGATTCTAGTAAACAGCAAGTTCACTGCAACAACATTTGCCAGGACCTTTTGCAGC CTTCATGCTAGAGGAGTCGAGCCTGCTGTTCTATATCCAGCTGTCTCTGTTGAACAGTTT CAGGAACCTCATGCTTATAAGTTGAATTTCCTCTCAATTAACCGGTTTGAGAGAAAAAAG AATCTTGGTCTTGCCATTTCAGCATTTTCTCTGCTTCGCTCTGTTGCTTCTATGCTACCT GGTGATGCTCGACAGGAAGTAACCTTAACAGTAGCAGGTGGATATGATAAGCGTCTCAGA GAAAATGTTGAATACCTTGAGGAGCTCAAAAGATTGGCAGCGAGTGAAGGGGTTTCTGAA CATGTCAAATTTGTGACATCTTGTTCAACTTCTGAAAGGAACGAACTTCTCTCCAACTGC CTTTGTGTGTTATACACTCCAAAGGATGAACATTTCGGTATTGTTCCTCTGGAAGCCATG GCCGCATATAAACCTGTAATTGCATGCAACAGTGGTGGTCCAGTGGAAACAGTCATAAAT GACGAGACAGGGTTTCTCTGTGAGCCCTCTGCCCCTGAATTTTCAAAAGCCATGCTGAAG CTCGTGAACGATCACGATCTAGCAGTTAAGATGGGTAAACAAGCAAGGGGCCATGTTGTG CAGAAGTTCTCAACCAAGACATTTGGTGACCTTCTGAACAGCTATGTCCTTAATGTGTAC CATCAGAGGATTGAGTGATCCCCAATTCGGTGTCGGCAATGCCGTGGAACACTTGGAATA GACCATCATTTTCATGTTTTTTCCTTTTCTTTTGTTACTTCTGACTTCGATGTACACGCA TGCGATAGAGTATTATATACGGATGAATAGTGAAAACGACTTTGTAATGTTACCATTTGT GGCAATGACAGGAAAAAATATATATTTGGGCCGTCTGAAACAGAGCTGAAGTTTACAATC TGATTGTCTTTCCCTGGAAAGAGATATCAGGTACAAAAAAAAGGA



consensusID : consensus_12955#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 525
fasta sequence
                              [CTGTTGTGTGTTTATACACTCCAAAGGATGAACATTTCGGTATTGTTCCTCTGGAAGCCATGGCCGCATATAAACCTGTAATTGCATGCAACAGTGGTGGTCCAGTGGAAACAGTCATAAATGACGAGACAGGGTTTCTCTGTGAGCCCTCTGCCCCTGAATTTTCAAAAGCCATGCTGAAGCTCGTGAACGATCACGATCTAGCAGTTAAGATGGGTAAACAAGCAAGGGGCCATGTTGTGCAGAAGTTCTCAACCAAGACATTTGGTGACCTTCTGAACAGCTATGTCCTTAATGTGTACCATCAGAGGATTGAGTGATCCCCAATTCGGTGTCGGCAATGCCGTGGAACACTTGGAATAGACCATCATTTTCATGTTTTTTCCTTTTCTTTTGTTACTTCTGACTTCGATGTACACGCATGCGATAGAGTATTATATACGGATGAATAGTGAAAACGACTTTGTAATGTTACCATTTGTGGCAATGACAGGCCANAATATATAAAAAAAAAAAAAAAAAAAA]

[+] EMBL BM422094             [CTGTTGTGTGTTTATACACTCCAAAGGATGAACATTTCGGTATTGTTCCTCTGGAAGCCATGGCCGCATATAAACCTGTAATTGCATGCAACAGTGGTGGTCCAGTGGAAACAGTCATAAATGACGAGACAGGGTTTCTCTGTGAGCCCTCTGCCCCTGAATTTTCAAAAGCCATGCTGAAGCTCGTGAACGATCACGATCTAGCAGTTAAGATGGGTAAACAAGCAAGGGGCCATGTTGTGCAGAAGTTCTCAACCAAGACATTTGGTGACCTTCTGAACAGCTATGTCCTTAATGTGTACCATCAGAGGATTGAGTGATCCCCAATTCGGTGTCGGCAATGCCGTGGAACACTTGGAATAGACCATCATTTTCATGTTTTTTCCTTTTCTTTTGTTACTTCTGACTTCGATGTACACGCATGCGATAGAGTATTATATACGGATGAATAGTGAAAACGACTTTGTAATGTTACCATTTGTGGCAATGACAGGCCANAATATATAAAAAAAAAAAAAAAAAAAA]


>consensus_12955#1 CTGTTGTGTGTTTATACACTCCAAAGGATGAACATTTCGGTATTGTTCCTCTGGAAGCCA TGGCCGCATATAAACCTGTAATTGCATGCAACAGTGGTGGTCCAGTGGAAACAGTCATAA ATGACGAGACAGGGTTTCTCTGTGAGCCCTCTGCCCCTGAATTTTCAAAAGCCATGCTGA AGCTCGTGAACGATCACGATCTAGCAGTTAAGATGGGTAAACAAGCAAGGGGCCATGTTG TGCAGAAGTTCTCAACCAAGACATTTGGTGACCTTCTGAACAGCTATGTCCTTAATGTGT ACCATCAGAGGATTGAGTGATCCCCAATTCGGTGTCGGCAATGCCGTGGAACACTTGGAA TAGACCATCATTTTCATGTTTTTTCCTTTTCTTTTGTTACTTCTGACTTCGATGTACACG CATGCGATAGAGTATTATATACGGATGAATAGTGAAAACGACTTTGTAATGTTACCATTT GTGGCAATGACAGGCCANAATATATAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12955#0      CGAGTTAGCGAGCAGAGATCCACGGCCCGCAGCGGCGGCGGCGGCGGCGGCGGCCGAAGC 60
consensus_12955#1      ------------------------------------------------------------
                                                                                   

consensus_12955#0      CCATCTGGTTACGCGAGGGAGATGGCAGCGGCGGCGGGAGGAGTCGCCGGCGAGCCGTCG 120
consensus_12955#1      ------------------------------------------------------------
                                                                                   

consensus_12955#0      GGGACGAGGACGAAGCAGCTTAAGGTCGCCGTGATCCACCCCGATCTCGGGATAGGTGGT 180
consensus_12955#1      ------------------------------------------------------------
                                                                                   

consensus_12955#0      GCTGAGAGATTGATAGTCGATGCGGCTTGTCAGCTTGCGGTCCATGGTCATGATGTTCAT 240
consensus_12955#1      ------------------------------------------------------------
                                                                                   

consensus_12955#0      GTTTTCACATCACATCATGACAAAAACCGATGCTTTGAAGAGACTGTTTCTGGTCCATTT 300
consensus_12955#1      ------------------------------------------------------------
                                                                                   

consensus_12955#0      GAAGTTAAAGTATATGGAGATTTCTTGCCTCGCCATATTTTTTACCGCTTCCACGCTATC 360
consensus_12955#1      ------------------------------------------------------------
                                                                                   

consensus_12955#0      TGTGCATATCTTCGCTGCATTTTTGTTGCAATGTGTGTGCTACTTTGGTGGCCCTCATTT 420
consensus_12955#1      ------------------------------------------------------------
                                                                                   

consensus_12955#0      GACATCATATTAGTAGACCAGGTTTCGGTTGTGATTCCACTGCTTAAACTGAAGGCAAAA 480
consensus_12955#1      ------------------------------------------------------------
                                                                                   

consensus_12955#0      TCCAAGATAGTATTTTATTGTCACTTTCCTGATATGTTGCTTGCTCAACATACTACCATG 540
consensus_12955#1      ------------------------------------------------------------
                                                                                   

consensus_12955#0      CTTCGGAGGTTGTATCGCAAGCCAATTGACATGATTGAAGAAACAACTACTGGTATGGCA 600
consensus_12955#1      ------------------------------------------------------------
                                                                                   

consensus_12955#0      GATTTGATTCTAGTAAACAGCAAGTTCACTGCAACAACATTTGCCAGGACCTTTTGCAGC 660
consensus_12955#1      ------------------------------------------------------------
                                                                                   

consensus_12955#0      CTTCATGCTAGAGGAGTCGAGCCTGCTGTTCTATATCCAGCTGTCTCTGTTGAACAGTTT 720
consensus_12955#1      ------------------------------------------------------------
                                                                                   

consensus_12955#0      CAGGAACCTCATGCTTATAAGTTGAATTTCCTCTCAATTAACCGGTTTGAGAGAAAAAAG 780
consensus_12955#1      ------------------------------------------------------------
                                                                                   

consensus_12955#0      AATCTTGGTCTTGCCATTTCAGCATTTTCTCTGCTTCGCTCTGTTGCTTCTATGCTACCT 840
consensus_12955#1      ------------------------------------------------------------
                                                                                   

consensus_12955#0      GGTGATGCTCGACAGGAAGTAACCTTAACAGTAGCAGGTGGATATGATAAGCGTCTCAGA 900
consensus_12955#1      ------------------------------------------------------------
                                                                                   

consensus_12955#0      GAAAATGTTGAATACCTTGAGGAGCTCAAAAGATTGGCAGCGAGTGAAGGGGTTTCTGAA 960
consensus_12955#1      ------------------------------------------------------------
                                                                                   

consensus_12955#0      CATGTCAAATTTGTGACATCTTGTTCAACTTCTGAAAGGAACGAACTTCTCTCCAACTGC 1020
consensus_12955#1      -----------------------------------------------------------C 1
                                                                                  *

consensus_12955#0      CTTTGTGTGTT-ATACACTCCAAAGGATGAACATTTCGGTATTGTTCCTCTGGAAGCCAT 1079
consensus_12955#1      TGTTGTGTGTTTATACACTCCAAAGGATGAACATTTCGGTATTGTTCCTCTGGAAGCCAT 61
                         ********* ************************************************

consensus_12955#0      GGCCGCATATAAACCTGTAATTGCATGCAACAGTGGTGGTCCAGTGGAAACAGTCATAAA 1139
consensus_12955#1      GGCCGCATATAAACCTGTAATTGCATGCAACAGTGGTGGTCCAGTGGAAACAGTCATAAA 121
                       ************************************************************

consensus_12955#0      TGACGAGACAGGGTTTCTCTGTGAGCCCTCTGCCCCTGAATTTTCAAAAGCCATGCTGAA 1199
consensus_12955#1      TGACGAGACAGGGTTTCTCTGTGAGCCCTCTGCCCCTGAATTTTCAAAAGCCATGCTGAA 181
                       ************************************************************

consensus_12955#0      GCTCGTGAACGATCACGATCTAGCAGTTAAGATGGGTAAACAAGCAAGGGGCCATGTTGT 1259
consensus_12955#1      GCTCGTGAACGATCACGATCTAGCAGTTAAGATGGGTAAACAAGCAAGGGGCCATGTTGT 241
                       ************************************************************

consensus_12955#0      GCAGAAGTTCTCAACCAAGACATTTGGTGACCTTCTGAACAGCTATGTCCTTAATGTGTA 1319
consensus_12955#1      GCAGAAGTTCTCAACCAAGACATTTGGTGACCTTCTGAACAGCTATGTCCTTAATGTGTA 301
                       ************************************************************

consensus_12955#0      CCATCAGAGGATTGAGTGATCCCCAATTCGGTGTCGGCAATGCCGTGGAACACTTGGAAT 1379
consensus_12955#1      CCATCAGAGGATTGAGTGATCCCCAATTCGGTGTCGGCAATGCCGTGGAACACTTGGAAT 361
                       ************************************************************

consensus_12955#0      AGACCATCATTTTCATGTTTTTTCCTTTTCTTTTGTTACTTCTGACTTCGATGTACACGC 1439
consensus_12955#1      AGACCATCATTTTCATGTTTTTTCCTTTTCTTTTGTTACTTCTGACTTCGATGTACACGC 421
                       ************************************************************

consensus_12955#0      ATGCGATAGAGTATTATATACGGATGAATAGTGAAAACGACTTTGTAATGTTACCATTTG 1499
consensus_12955#1      ATGCGATAGAGTATTATATACGGATGAATAGTGAAAACGACTTTGTAATGTTACCATTTG 481
                       ************************************************************

consensus_12955#0      TGGCAATGACAGGAAAAAATATATATTTGGGCCGTCTGAAACAGAGCTGAAGTTTACAAT 1559
consensus_12955#1      TGGCAATGACAGGCCANAATATATAAAAAAAAAAAAAAAAAAAA---------------- 525
                       *************  * ********             *** *                 

consensus_12955#0      CTGATTGTCTTTCCCTGGAAAGAGATATCAGGTACAAAAAAAAGGA 1605
consensus_12955#1      ----------------------------------------------
                                                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)