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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12956#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 2997 fasta sequence
[GCCTTCTCGACGCCGCGTGGTCGCCGTCCGGCGAGCGGAGAGTGCGGGCGGTGGCGGTGGCGGTGGCGGTGGTGGGGAGGGGACGAGGCGGCGGGGGCATGG-TCACCATGTCGGCCGCGGCGAGCTGGACCGCCGAGGACGACGTCCTGCTGAAGAACGCCGTCGAGGCTGGTGCCTCATTGGAATCCTTGGCTAAAGGAGCTGTATGTTTTTCCCGCAAATTCACTCTTCAAGAATTACAGGATCGTTGGTCCTCATTGCTGTATGACTCAGAGACCTCAGGACAAGCATCTGCCCTCATAGTCAAGTATGAGACTGAACTTTCAACCTCCAACCCGACCAAAGCACATAAACTTTTCTACGTGAGGAGAAAACATCTTTCTCTCAGGAAGAGGAAAATTGAGAGTGTAAAGAATCAGTATTATGCAATGAGAAAGAGAATCTGCCATGATCCATGTTTGGCTGCAGATTTTGGTTATGTTATCACACCCTGTTCATGCCCTGTAGGTAGTGATTGTGTATGTGATGGATTATTTAACTTGTTGGAAGATAATCATTTGATCCATAACGTTAATCAAGCTCCAGATGTTGTAAATGGCTATGGTCACATAGGCGAAAGCTATGCTGATGGACAAGATGTACATGCCAAAGATAATGGACATTATATATCCCATAGAAGGCATGATAAAGCTGCTGGGACAGTGGCAAGTGATGGAAGCACTAATTGTGAAAGTGCAAATGGCTGTTCTGATGTAGGTAAGTTATATGGATACAACTTCATGCCAAAGAACATTCAGTCAAGTGAAAGGAATATTGCCTCTCCAAAGGACCTTTCTGATGTCCAGGACTGTGTGCAGCCTCAGCAACCAATTCTTTGTGAAGAATCAGCCAATGGAATGACAGGGTTAAAGGCTTTACTGAATACTGATCAAGATTGCATAAAACAGAACCAGTTTTCTGGTAACAGCAATGAAATATTGCAAGACCCAGGCTCGCTAAAAGCAATGAGTGAACATTGGTGTTCTCAGGCACCTAGTGCTCCTACTAGGAAGAAGTTTCAGGGTGTTAATGCACCTGACATGCTGACAGATGTGCATCACAAAGAGCAAGAAATTCTTGCCTTTTCTGATGACAAGAAAAAGGAAACTACTAACATTGACACATTTTCATGCAAGGTGAATGTGGAGAATGGAATGTCTGGATCTGGCTTAGACGATGCAACAGAAGGTGAAGTTATGCACTCATGCTTAATGGATGCCAGTCAGGGTGAAGACTTTGAGCTACTTAATAGCGAGAATATTTTGGATTCTTCTCTTGACCCAAATCTGGAAGGTTTAGGCGATCGACATGCTAATGTTATTCTGAAGGACATCTCCAAAGAGCACCTTCTGGACATTCCTCATGTAAGCAGTGCCTGTGGTAACAACACAGATCCAATCCATGAGAAGCATGATGTGGCAGATATTTCTGGAGTGGACATGATATACACAACAGAAGTGCCTTTTCCTTGTGCTGGTATTGTGTGCATATTAAACACCGAAGAT-CCTGAAATCCCTTGCAATGATGATATCTTTACACCTGGGCCTGTAGCATCCACCTCTACTTGTGACCAGAATTCACAGCACAATATGCATTTGGTTTCTGCCAAACCTATTCCTCCACTAAATGCTGCTGACTTGAATCACACCGACTTGGTTAGTGATGTCCAACCATTGTTACTTACAATGAAGTTGGAACCTTACACCTTGGAACAAAAGGAAACTT-TGGTGGGTCTTAATGAATCTTGTACCGTAAGAAGCAAGTCACCTGTTATGCCTGTTGATGCTAGCAATGCAAATGCATGCACATCAACTTTCCATTCTGCTGCAGAATTTGTTAAAAAATCTACATGTGGTTTAGTGCAACATGAATGTTTTGATAACTTGGGGAGTGTGTCTTTGGATGAGTGTATTGGAGTGCTTGATGAAATGAATTCTAAGGTTCCTGATGAGTCAGGAATAAGTTGTGATGCTACTACCCAAAACAGCATTTCAGCGCATGCATTGCCAGATGTGGAATTTCTTAATCCCATAACAACCACTTCAAGCCCAGAA-GGGGGAGGATCTGACAGTGAGGACGGTATTCCAAACTATTTCGACATAGAAGCTTTGATACTTGATCAGGATTTAATTCCATGGGATCAAGAATCTGATTTCATCCAGC-TCGAAGTTTCCA-GGTTTCAGTCTCTT-GAAAGTAGGAAAGACTTGATAAGATTAGAACGAGGTGCCCGCTCTAATACAAACAGATCTATTATGTCCCATGGTGCTTTTGCAGTTCTTTATGGCCAGCATTTGAAATACTACATAAAGGATCCAGAGGTTACACTTGGGAGAGAAACAAGTGAGGAACATGTCGACATCGATTTGGGAAAAGAAGGAAAGGCGAATACAATATCCCGTCAACAGGCAATTATCAAGATGGATAAAGGTGGATCTTTCCACATAACGAATATAGGAAAAGCTCCAATCTTCGTCAATAGCAAAGAAGTTCCATGCAACGAATGCACTCACTTAATTTCTGATGCATTACTTCAGATAAGGCACATGAAATTCATTTTTCACATCAAT-CAGGATGCCGTGAGGCAACATATAGTTCGCAGTAGGAGAGGAACCTCCCAAGGCAAGTACGCAGTATTTAATTGGGATGAAAAGCCATGAATTAAGGTTACGATCAAGCTCATGTGTGAATTTATTGTCAGTAATATATATCGGCAGGATAGAAGTATATAGCACCATATCTAATTCGGTCCCATCCTTTGCATGTAAATCGTTGTATATTTCCATGCTTATCATTTAGTATATAATAGATATATGCTCAATTATCGTCTTCAGATCCATATTGTTGTAAGGTGCCACGGTTTTATGTTTGAAATTTGGATTTAAATTTCATCGACAAAAGTTGTTTTACTTAAAAGGGAACTGAATTCTCAAAGATGAACCCCTTGCATGCTTTAAAAAA]
[+] EMBL AK073533 [GCCTTCTCGACGCCGCGTGGTCGCCGTCCGGCGAGCGGAGAGTGCGGGCGGTGGCGGTGGCGGTGGCGGTGGTGGGGAGGGGACGAGGCGGCGGGGGCATGG TCACCATGTCGGCCGCGGCGAGCTGGACCGCCGAGGACGACGTCCTGCTGAAGAACGCCGTCGAGGCTGGTGCCTCATTGGAATCCTTGGCTAAAGGAGCTGTATGTTTTTCCCGCAAATTCACTCTTCAAGAATTACAGGATCGTTGGTCCTCATTGCTGTATGACTCAGAGACCTCAGGACAAGCATCTGCCCTCATAGTCAAGTATGAGACTGAACTTTCAACCTCCAACCCGACCAAAGCACATAAACTTTTCTACGTGAGGAGAAAACATCTTTCTCTCAGGAAGAGGAAAATTGAGAGTGTAAAGAATCAGTATTATGCAATGAGAAAGAGAATCTGCCATGATCCATGTTTGGCTGCAGATTTTGGTTATGTTATCACACCCTGTTCATGCCCTGTAGGTAGTGATTGTGTATGTGATGGATTATTTAACTTGTTGGAAGATAATCATTTGATCCATAACGTTAATCAAGCTCCAGATGTTGTAAATGGCTATGGTCACATAGGCGAAAGCTATGCTGATGGACAAGATGTACATGCCAAAGATAATGGACATTATATATCCCATAGAAGGCATGATAAAGCTGCTGGGACAGTGGCAAGTGATGGAAGCACTAATTGTGAAAGTGCAAATGGCTGTTCTGATGTAGGTAAGTTATATGGATACAACTTCATGCCAAAGAACATTCAGTCAAGTGAAAGGAATATTGCCTCTCCAAAGGACCTTTCTGATGTCCAGGACTGTGTGCAGCCTCAGCAACCAATTCTTTGTGAAGAATCAGCCAATGGAATGACAGGGTTAAAGGCTTTACTGAATACTGATCAAGATTGCATAAAACAGAACCAGTTTTCTGGTAACAGCAATGAAATATTGCAAGACCCAGGCTCGCTAAAAGCAATGAGTGAACATTGGTGTTCTCAGGCACCTAGTGCTCCTACTAGGAAGAAGTTTCAGGGTGTTAATGCACCTGACATGCTGACAGATGTGCATCACAAAGAGCAAGAAATTCTTGCCTTTTCTGATGACAAGAAAAAGGAAACTACTAACATTGACACATTTTCATGCAAGGTGAATGTGGAGAATGGAATGTCTGGATCTGGCTTAGACGATGCAACAGAAGGTGAAGTTATGCACTCATGCTTAATGGATGCCAGTCAGGGTGAAGACTTTGAGCTACTTAATAGCGAGAATATTTTGGATTCTTCTCTTGACCCAAATCTGGAAGGTTTAGGCGATCGACATGCTAATGTTATTCTGAAGGACATCTCCAAAGAGCACCTTCTGGACATTCCTCATGTAAGCAGTGCCTGTGGTAACAACACAGATCCAATCCATGAGAAGCATGATGTGGCAGATATTTCTGGAGTGGACATGATATACACAACAGAAGTGCCTTTTCCTTGTGCTGGTATTGTGTGCATATTAAACACCGAAGAT CCTGAAATCCCTTGCAATGATGATATCTTTACACCTGGGCCTGTAGCATCCACCTCTACTTGTGACCAGAATTCACAGCACAATATGCATTTGGTTTCTGCCAAACCTATTCCTCCACTAAATGCTGCTGACTTGAATCACACCGACTTGGTTAGTGATGTCCAACCATTGTTACTTACAATGAAGTTGGAACCTTACACCTTGGAACAAAAGGAAACTT TGGTGGGTCTTAATGAATCTTGTACCGTAAGAAGCAAGTCACCTGTTATGCCTGTTGATGCTAGCAATGCAAATGCATGCACATCAACTTTCCATTCTGCTGCAGAATTTGTTAAAAAATCTACATGTGGTTTAGTGCAACATGAATGTTTTGATAACTTGGGGAGTGTGTCTTTGGATGAGTGTATTGGAGTGCTTGATGAAATGAATTCTAAGGTTCCTGATGAGTCAGGAATAAGTTGTGATGCTACTACCCAAAACAGCATTTCAGCGCATGCATTGCCAGATGTGGAATTTCTTAATCCCATAACAACCACTTCAAGCCCAGAA GGGGGAGGATCTGACAGTGAGGACGGTATTCCAAACTATTTCGACATAGAAGCTTTGATACTTGATCAGGATTTAATTCCATGGGATCAAGAATCTGATTTCATCCAGC TCGAAGTTTCCA GGTTTCAGTCTCTT GAAAGTAGGAAAGACTTGATAAGATTAGAACGAGGTGCCCGCTCTAATACAAACAGATCTATTATGTCCCATGGTGCTTTTGCAGTTCTTTATGGCCAGCATTTGAAATACTACATAAAGGATCCAGAGGTTACACTTGGGAGAGAAACAAGTGAGGAACATGTCGACATCGATTTGGGAAAAGAAGGAAAGGCGAATACAATATCCCGTCAACAGGCAATTATCAAGATGGATAAAGGTGGATCTTTCCACATAACGAATATAGGAAAAGCTCCAATCTTCGTCAATAGCAAAGAAGTTCCATGCAACGAATGCACTCACTTAATTTCTGATGCATTACTTCAGATAAGGCACATGAAATTCATTTTTCACATCAAT CAGGATGCCGTGAGGCAACATATAGTTCGCAGTAGGAGAGGAACCTCCCAAGGCAAGTACGCAGTATTTAATTGGGATGAAAAGCCATGAATTAAGGTTACGATCAAGCTCATGTGTGAATTTATTGTCAGTAATATATATCGGCAGGATAGAAGTATATAGCACCATATCTAATTCGGTCCCATCCTTTGCATGTAAATCGTTGTATATTTCCATGCTTATCATTTAGTATATAATAGATATATGCTCAATTATCGTCTTCAGATCCATATTGTTGTAAGGTGCCACGGTTTTATGTTTGAAATTTGGATTTA ]
[+] EMBL CB672331 [ GGCATGGCTCTCTTTATCGGCCGCGGCGAGCTGGACCGCCGAGGACGACGTCCTGCTGAAGAACGCCGTCGAGGCTGGTGCCTCATTGGAATCCTTGGCTAAAGGAGCTGTATGTTTTTCCCGCAAATTCGCTCTTCAAGAATTACAGGATCGTTGGTCCTCATTGCTGTATGACTCATAGACCTCAGGACAAGCATCTGCCCTCATAGTCAAGTATGAGACTGAACTTTCAACCTCCAACCCGACCAAAGCACATAAACTTTTCTACGTGAGGAGAAAACATCTTTCTCTCAGGAAGAGGAAAATTGAGAGTGTAAAGAATCAGTATTATGCAATGAGAAAGAGAATCTGCCATGATCCATGTTTGGCTGCAGATTTTGGTTATGTTATCACACCCTGTTCATGCCCTGTAGGTAGTGATTGTGTATGTGATGGATTATTTAACTTGTTGGAAGATAATCATTTGATCCATAACGTTAATCAAGCTCCAGATGTTGTAAATGGCTATGGTCACATACGCGAAAGCTATGCTGATGGACAAGATGTACATGCCAAAGATAATGGACATTATATATCCCATAGAAGGCATGATAAAGCTGCTGGGACAGTGGCAAGTGATGGAAGCACTAATTGTGAAAGTGCAAATGGCTGTTCTGATGTAGGTAAGTTATATGGATACAACTTCATGCCAAAGAACATTCAATCAAGTGCAAGGAATATTGCCTCTCCAGAGGACCTTTCTGATGTCCAGGACTGTGTGCAGCCTCAGCAAC ]
[+] EMBL AK067037 [ ATGATCCATGTTTGGCTGCAGATTTTGGTTATGTTATCACACCCTGTTCATGCCCTGTAGGTAGTGATTGTGTATGTGATGGATTATTTAACTTGTTGGAAGATAATCATTTGATCCATAACGTTAATCAAGCTCCAGATGTTGTAAATGGCTATGGTCACATAGGCGAAAGCTATGCTGATGGACAAGATGTACATGCCAAAGATAATGGACATTATATATCCCATAGAAGGCATGATAAAGCTGCTGGGACAGTGGCAAGTGATGGAAGCACTAATTGTGAAAGTGCAAATGGCTGTTCTGATGTAGGTAAGTTATATGGATACAACTTCATGCCAAAGAACATTCAGTCAAGTGAAAGGAATATTGCCTCTCCAAAGGACCTTTCTGATGTCCAGGACTGTGTGCAGCCTCAGCAACCAATTCTTTGTGAAGAATCAGCCAATGGAATGACAGGGTTAAAGGCTTTACTGAATACTGATCAAGATTGCATAAAACAGAACCAGTTTTCTGGTAACAGCAATGAAATATTGCAAGACCCAGGCTCGCTAAAAGCAATGAGTGAACATTGGTGTTCTCAGGCACCTAGTGCTCCTACTAGGAAGAAGTTTCAGGGTGTTAATGCACCTGACATGCTGACAGATGTGCATCACAAAGAGCAAGAAATTCTTGCCTTTTCTGATGACAAGAAAAAGGAAACTACTAACATTGACACATTTTCATGCAAGGTGAATGTGGAGAATGGAATGTCTGGATCTGGCTTAGACGATGCAACAGAAGGTGAAGTTATGCACTCATGCTTAATGGATGCCAGTCAGGGTGAAGACTTTGAGCTACTTAATAGCGAGAATATTTTGGATTCTTCTCTTGACCCAAATCTGGAAGGTTTAGGCGATCGACATGCTAATGTTATTCTGAAGGACATCTCCAAAGAGCACCTTCTGGACATTCCTCATGTAAGCAGTGCCTGTGGTAACAACACAGATCCAATCCATGAGAAGCATGATGTGGCAGATATTTCTGGAGTGGACATGATATACACAACAGAAGTGCCTTTTCCTTGTGCTGGTATTGTGTGCATATTAAACACCGAAGAT CCTGAAATCCCTTGCAATGATGATATCTTTACACCTGGGCCTGTAGCATCCACCTCTACTTGTGACCAGAATTCACAGCACAATATGCATTTGGTTTCTGCCAAACCTATTCCTCCACTAAATGCTGCTGACTTGAATCACACCGACTTGGTTAGTGATGTCCAACCATTGTTACTTACAATGAAGTTGGAACCTTACACCTTGGAACAAAAGGAAACTT TGGTGGGTCTTAGTGAATCTTGTACCGTAAGAAGCAAGTCACCTGTTATGCCTGTTGATGCTAGCAATGCAAATGCATGCACATCAACTTTCCATTCTGCTGCAGAATTTGTTAAAAAATCTACATGTGGTTTAGTGCAACATGAATGTTTTGATAACTTGGGGAGTGTGTCTTTGGATGAGTGTATTGGAGTGCTTGATGAAATGAATTCTAAGGTTCCTGATGAGTCAGGAATAAGTTGTGATGCTACTACCCAAAACAGCATTTCAGCGCATGCATTGCCAGATGTGGAATTTCTTAATCCCATAACAACCACTTCAAGCCCAGAA AGGGGAGGATCTGACAGTGAGGACGGTATTCCAAACTATTTCGACATAGAAGCTTTGATACTTGATCAGGATTTAATTCCATGGGATCAAGAGTCTGATTTCATCCAGC TCGAAGTTTCCA GGTTTCAGTCTCTT GAAAGTAGGAAAGACTTGATAAGATTAGAACGAGGTGCCCGCTCTAATACAAACAGATCTATTATGTCCCATGGTGCTTTTGCAGTTCTTTATGGCCAGCATTTGAAATACTACATAAAGGATCCAGAGGTTACACTTGGGAGAGAAACAAGTGAGGAACATGTCGACATCGATTTGGGAAAAGAAGGAAAGGCGAATACAATATCCCGTCAACAGGCAATTATCAAGATGGATAAAGGTGGATCTTTCCACATAACGAATATAGGAAAAGCTCCAATCTTCGTCAATAGCAAAGAAGTTCCATGCAACGAATGCACTCACTTAATTTCTGATGCATTACTTCAGATAAGGCACATGAAATTCATTTTTCACATCAAT CAGGATGCCGTGAGGCAACATATAGTTCGCAGTAGGAGAGGAACCTCCCAAGGCAAGTACGCAGTATTTAATTGGGATGAAAAGCCATGAATTAAGGTTACGATCAAGCTCATGTGTGAATTTATTGTCAGTAATATATATCGGCAGGATAGAAGTATATAGCACCATATCTAATTCGGTCCCATCCTTTGCATGTAAATCGTTGTATATTTCCATGCTTATCATTTAGTATATAATAGATATATGCTCAATTATCGTCTTCAGATCCATATTGTTGTAAGGTGCCACGGTTTTATGTTTGAAATTTGGATTTA ]
[+] EMBL CF304388 [ AAGATTGCATAAAACAGAACCAGTTTTCTGGTAACAGCAATGAAATATTGCAAGACCCAGGCTCGCTAAAAGCAATGAGTGAACATTGGTGTTCTCAGGCACCTAGTGCTCCTACTAGGAAGAAGTTTCAGGGTGTTAATGCACCTGACATGCTGACAGATGTGCATCACAAAGAGCAAGAAATTCTTGCCTTTTCTGATGACAAGAAAAAGGAAACTACTAACATTGACACATTTTCATGCAAGGTGAATGTGGAGAATGGAATGTCTGGATCTGGCTTAGACGATGCAACAGAAGGTGAAGTTATGCACTCATGCTTAATGGATGCCAGTCAGGGTGAAGACTTTGAGCTACTTAATAGCGAGAATATTTTGGATTCTTCTCTTGACCCAAATCTGGAAGGTTTAGGCGATCGACATGCTAATGTTATTCTGAAGGACATCTCCAAAGAGCACCTTCTGGACATTCCTCATGTAAGCAGTGCCTGTGGTAACAACACAGATCCAATCCATGAGAAGCATGATGTGGCAGATATTTCTGGAGTGGACATGATATACACAACAGAAGTGCCTTTTCCTTGTGCTGGTATTGTGTGCATATTAAACACCGAAGATCCCTG AATCCCTTGCAATGATGATATCTTTACA ]
[+] EMBL C71863 [ GTGCTCCTACTAGGAAGAAGTTTCAGGGTGTTAATGCACCTGACATGCTGACAGATGTGCATCACAAAGAGCAAGAAATTCTTGCCTTTNCTGATGACAAGAAAAAGGAAACTACTAACATTGACACATTTTCATGCAAGGTGAATGTGGAGAATGGAATGTNTGGTTCTGGCTTAGACGATGCAACAGAAGGTGAAGTTATGCACTCATGCTTAATGGATGCCAGTCAGGGTGAAGACTTTNAGCTACTTAATAGCGAGAATATTTTGGATTCTNCTCTTGACCCAAATCTGGAAGGTTTAGGCGATCGANATGCTAATGTTATTCTGAAGGACATCTCCAAAGAGCACCTTCTGGACATTCCTCATGTAAGCAGTGCCTGTGGTAACAACACAGATCCAATCCATGAGAAGCATGATGTGGCAGATATTTCTGG ]
[+] EMBL CF323040 [ GAGAATGGAATGTCTGGATCTGGCTTAGACGATGCAACAGAAGGTGAAGTTATGCACTCATGCTTAATGGATGCCAGTCAGGGTGAAGACTTTGAGCTACTTAATAGCGAGAATATTTTGGATTCTTCTCTTGACCCAAATCTGGAAGGTTTAGGCGATCGACATGCTAATGTTATTCTGAAGGACATCTCCAAAGAGCACCTTCTGGACATTCCTCATGTAAGCAGTGCCTGTGGTAACAACACAGATCCAATCCATGAGAAGCATGATGTGGCAGATATTTCTGGAGTGGACATGATATACACAACAGAAGTGCCTTTTCCTTGTGCTGGTATTGTGTGCATATTAAACACCGAAGAT CCTGAAATCCCTTGCAATGATGATATCTTTACACCTGGGCCTGTAGCATCCACCTCTACTTGTGACCAGAATTCACAGCACAATATGCATTTGGTTTCTGCCAAACCTATTCCTCCACTAAATGCTGCTGACTTGAATCACACCGACTTGGTTAGTGATGTCCAACCATTGTTACTTACAATGAAGTTGGAACCTTACACCTTGGAACAAAAGGAAACTTNTGGTGGGTCTTAATGAATCTTGTACCGTAAGAAGCAAGTCACCTGTTATGCCTGTTGATGCTAGCAATGCAAATGCATGCACATCAACTTTCC ]
[+] EMBL CF323472 [ TGGACATTCCTCATGTAAGCAGTGCCTGTGGTAACAACACAGATCCAATCCATGAGAAGCATGATGTGGCAGATATTTCTGGAGTGGACATGATATACACAACAGAAGTGCCTTTTCCTTGTGCTGGTATTGTGTGCATATTAAACACCGAAGAT CCTGAAATCCCTTGCAATGATGATATCTTTACACCTGGGCCTGTAGCATCCACCTCTACTTGTGACCAGAATTCACAGCACAATATGCATTTGGTTTCTGCCAAACCTATTCCTCCACTAAATGCTGCTGACTTGAATCACACCGACTTGGTTAGTGATGTCCAACCATTGTTACTTACAATGAAGTTGGAACCTTACACCTTGGAACAAAAGGAAACTT TGGTGGGTCTTAATGAATCTTGTACCGTAAGAAGCAAGTCACCTGTTATGCCTGTTGATGCTAGCAATGCAAATGCATGCACATCAACTTTCCATTCTGCTGCAGAATTTGTTAAAA ]
[+] EMBL CB096809 [ agGGGGTGGACATGATATACACAACAGAAGTGCCTTTTCCTTGTGCTGGTATTGTGTGCATATTAAACACCGAAGAT CCTGAAATCCCTTGCAATGATGATATCTTTACACCTGGGCCTGTAGCATCCACCTCTACTTGTGACCAGAATTCACAGCACAATATGCATTTGGTTTCTGCCAAACCTATTCCTCCACTAAATGCTGCTGACTTGAATCACACCGACTTGGTTAGTGATGTCCAACCATTGTTACTTACAATGAAGTTGGAACCTTACACCTTGGAACAAAAGGAAACTT TGGTGGGTCTTAATGAATCTTGTACCGTAAGAAGCAAGTCACCTGTTATGCCTGTTGATGCTAGCAATGCAAATGCATGCACATCAACTTTCCATTCTGCTGCAGAATTTGTTAAAAAATCTACATGTGGTTTAGTGCAACATGAATGTTTTGATAACTTGGGGA GTGTCTTTGGATGAGTGTATTGGAGTGCTTGATGAAATGAATTCTAAGGTTCCTGATGAGTCAGGAATAAGTTGTGATGCTACTACCCAAAACAGCATTTCAGCGCATGCATTGCCAGATGTGGAATTTCTTAATCCCATAACAACCACTTCAAGCCCAGAAGGGGGGAGGATCTGACAGTGAGGACGGTATTCCAAACTATTTCGACATAGAAGCTTTGATACTTGATCAGGATTTAATTCCATGGGATCAAGAATCTGATTTCATCCAGCTTCGAAGTTTTCAGGGTTTCAGTCTCTTGGAAAGTAGGAAAGACT ]
[-] EMBL CB672332 [ AGC TCGAAGTTTCCA GGTTTCAGTCTCTT GAAAGTAGGAAAGACTTGATAAGATTAGAACGAGGTGCCCGCTCTAATACAAACAGATCTATTATGTCCCATGGTGCTTTTGCAGTTCTTTATGGCCAGCATTTGAAATACTACATAAAGGATCCAGAGGTTACACTTGGGAGAGAAACAAGTGAGGAACATGTCGACATCGATTTGGGAAAAGAAGGAAAGGCGAATACAATATCCCGTCAACAGGCAATTATCAAGATGGATAAAGGTGGATCTTTCCACATAACGAATATAGGAAAAGCTCCAATCTTCGTCAATAGCAAAGAAGTTCCATGCAACGAATGCACTCACTTAATTTCTGATGCATTACTTCAGATAAGGCACATGAAATTCATTTTTCACATCAAT CAGGATGCCGTGAGGCAACATATAGTTCGCAGTAGGAGAGGAACCTCCCAAGGCAAGTACGCAGTATTTAATTGGGATGAAAAGCCATGAATTAAGGTTACGATCAAGCTCATGTGTGAATTTATTGTCAGTAATATATATCGGCAGGATAGAAGTATATAGCCCCATATCTAATTCGGTCCCATCCTTTGCATGTAAATCGTTGTATATTTCCATGCTTATCATTTAGTATATAATAGATATATGCTCAATTATCGTCTTCAGATCCATATTGTTGTAAGGTGCCACGGTTTTATGTTTGAAAAAAGGATTTAAATTTCATCGACAAAAGTTGTTTTACTTAAAA ]
[+] EMBL C98631 [ CTCCAATNTTCGTCAATNGCAAAGAAGTTCCATGCAACGAATGCACTCACTTAATTTCTGATGCATTACTTCAGATAAGGCAC TGAAATTCATTTTTCACATCAATCCAGGATGCCGTGAGGCAACATATAGTTCGCAGTAGGAGAGGAACCTCCCAAGGCAAGTACGCAGTATTTAATTGGGATGAAAAGCCATGAATTAAGGTTACGATCAAGCTCATGTGTGAATTTATTGTCAGTAATATATATCGGCAGGATAGAAGTATATAGCACCATATCTAATTCGGTCCCATCCTTTGCATGTAAATCGTTGTATATTTCCATGCTTATCATTTAGTATATAATAGATATATGCTCAATTATCGTCTTCAGATCCATATTGTTGTAAGGTGCCACGGTTTTATGTTTGAAATTTGGATTTAAATTTCATCGACAAAAGTTGTTTTAGTGGACTGGGAACTGAATTCTCAAAGATGAACCCCTTGCATGCTTTAAAAAA]
consensusID : consensus_12956#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 528 fasta sequence
[TTGCCTACCAATATACCGTAATTATACGGANAAAAGCCGTCCAAGCNTTTCTGTCACATTGACGCCCAAAANGAAGTTCCATTGGCCACCGGAATGCACTCACTTAATTTCTGATGCATTACTTCAGATAAGGCTACATGGAAANNCATGTTTTCACATCAATCAGGATGCCGTGAGGCTAACATATAGTTCTNCAGTAGNGAGAGGAACCTCCCAAGGCAAGTACGCTAGTATTTATATTGGGATGAAAAGCCATGAATTAAGGTTACGATCAAGCTCCATGGTGTGAATTTATTGTGCAGTGAATGATGATGATGCGGCAGGGATACGAAGTATATGAGCACCACTNATGCTGAATTGCGGTCCCATCCTGTTGCATGGTGAAATCCGTTGTGATATTTGCCATGCTTGATCATTTGAGTATGATAATAGATATATGCTCAATTATCGTCTTCAGATCCATATTGTTGTAAGGTGCCACGNTTTTATGTTTGAAATTTGGATTTAAACCTCCTCGAAAAAAAAAAA]
[+] EMBL BI806967 [TTGCCTACCAATATACCGTAATTATACGGANAAAAGCCGTCCAAGCNTTTCTGTCACATTGACGCCCAAAANGAAGTTCCATTGGCCACCGGAATGCACTCACTTAATTTCTGATGCATTACTTCAGATAAGGCTACATGGAAANNCATGTTTTCACATCAATCAGGATGCCGTGAGGCTAACATATAGTTCTNCAGTAGNGAGAGGAACCTCCCAAGGCAAGTACGCTAGTATTTATATTGGGATGAAAAGCCATGAATTAAGGTTACGATCAAGCTCCATGGTGTGAATTTATTGTGCAGTGAATGATGATGATGCGGCAGGGATACGAAGTATATGAGCACCACTNATGCTGAATTGCGGTCCCATCCTGTTGCATGGTGAAATCCGTTGTGATATTTGCCATGCTTGATCATTTGAGTATGATAATAGATATATGCTCAATTATCGTCTTCAGATCCATATTGTTGTAAGGTGCCACGNTTTTATGTTTGAAATTTGGATTTAAACCTCCTCGAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12956#0 GCCTTCTCGACGCCGCGTGGTCGCCGTCCGGCGAGCGGAGAGTGCGGGCGGTGGCGGTGG 60
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 CGGTGGCGGTGGTGGGGAGGGGACGAGGCGGCGGGGGCATGGTCACCATGTCGGCCGCGG 120
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 CGAGCTGGACCGCCGAGGACGACGTCCTGCTGAAGAACGCCGTCGAGGCTGGTGCCTCAT 180
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 TGGAATCCTTGGCTAAAGGAGCTGTATGTTTTTCCCGCAAATTCACTCTTCAAGAATTAC 240
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 AGGATCGTTGGTCCTCATTGCTGTATGACTCAGAGACCTCAGGACAAGCATCTGCCCTCA 300
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 TAGTCAAGTATGAGACTGAACTTTCAACCTCCAACCCGACCAAAGCACATAAACTTTTCT 360
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 ACGTGAGGAGAAAACATCTTTCTCTCAGGAAGAGGAAAATTGAGAGTGTAAAGAATCAGT 420
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 ATTATGCAATGAGAAAGAGAATCTGCCATGATCCATGTTTGGCTGCAGATTTTGGTTATG 480
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 TTATCACACCCTGTTCATGCCCTGTAGGTAGTGATTGTGTATGTGATGGATTATTTAACT 540
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 TGTTGGAAGATAATCATTTGATCCATAACGTTAATCAAGCTCCAGATGTTGTAAATGGCT 600
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 ATGGTCACATAGGCGAAAGCTATGCTGATGGACAAGATGTACATGCCAAAGATAATGGAC 660
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 ATTATATATCCCATAGAAGGCATGATAAAGCTGCTGGGACAGTGGCAAGTGATGGAAGCA 720
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 CTAATTGTGAAAGTGCAAATGGCTGTTCTGATGTAGGTAAGTTATATGGATACAACTTCA 780
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 TGCCAAAGAACATTCAGTCAAGTGAAAGGAATATTGCCTCTCCAAAGGACCTTTCTGATG 840
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 TCCAGGACTGTGTGCAGCCTCAGCAACCAATTCTTTGTGAAGAATCAGCCAATGGAATGA 900
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 CAGGGTTAAAGGCTTTACTGAATACTGATCAAGATTGCATAAAACAGAACCAGTTTTCTG 960
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 GTAACAGCAATGAAATATTGCAAGACCCAGGCTCGCTAAAAGCAATGAGTGAACATTGGT 1020
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 GTTCTCAGGCACCTAGTGCTCCTACTAGGAAGAAGTTTCAGGGTGTTAATGCACCTGACA 1080
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 TGCTGACAGATGTGCATCACAAAGAGCAAGAAATTCTTGCCTTTTCTGATGACAAGAAAA 1140
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 AGGAAACTACTAACATTGACACATTTTCATGCAAGGTGAATGTGGAGAATGGAATGTCTG 1200
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 GATCTGGCTTAGACGATGCAACAGAAGGTGAAGTTATGCACTCATGCTTAATGGATGCCA 1260
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 GTCAGGGTGAAGACTTTGAGCTACTTAATAGCGAGAATATTTTGGATTCTTCTCTTGACC 1320
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 CAAATCTGGAAGGTTTAGGCGATCGACATGCTAATGTTATTCTGAAGGACATCTCCAAAG 1380
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 AGCACCTTCTGGACATTCCTCATGTAAGCAGTGCCTGTGGTAACAACACAGATCCAATCC 1440
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 ATGAGAAGCATGATGTGGCAGATATTTCTGGAGTGGACATGATATACACAACAGAAGTGC 1500
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 CTTTTCCTTGTGCTGGTATTGTGTGCATATTAAACACCGAAGATCCTGAAATCCCTTGCA 1560
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 ATGATGATATCTTTACACCTGGGCCTGTAGCATCCACCTCTACTTGTGACCAGAATTCAC 1620
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 AGCACAATATGCATTTGGTTTCTGCCAAACCTATTCCTCCACTAAATGCTGCTGACTTGA 1680
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 ATCACACCGACTTGGTTAGTGATGTCCAACCATTGTTACTTACAATGAAGTTGGAACCTT 1740
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 ACACCTTGGAACAAAAGGAAACTTTGGTGGGTCTTAATGAATCTTGTACCGTAAGAAGCA 1800
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 AGTCACCTGTTATGCCTGTTGATGCTAGCAATGCAAATGCATGCACATCAACTTTCCATT 1860
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 CTGCTGCAGAATTTGTTAAAAAATCTACATGTGGTTTAGTGCAACATGAATGTTTTGATA 1920
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 ACTTGGGGAGTGTGTCTTTGGATGAGTGTATTGGAGTGCTTGATGAAATGAATTCTAAGG 1980
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 TTCCTGATGAGTCAGGAATAAGTTGTGATGCTACTACCCAAAACAGCATTTCAGCGCATG 2040
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 CATTGCCAGATGTGGAATTTCTTAATCCCATAACAACCACTTCAAGCCCAGAAGGGGGAG 2100
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 GATCTGACAGTGAGGACGGTATTCCAAACTATTTCGACATAGAAGCTTTGATACTTGATC 2160
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 AGGATTTAATTCCATGGGATCAAGAATCTGATTTCATCCAGCTCGAAGTTTCCAGGTTTC 2220
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 AGTCTCTTGAAAGTAGGAAAGACTTGATAAGATTAGAACGAGGTGCCCGCTCTAATACAA 2280
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 ACAGATCTATTATGTCCCATGGTGCTTTTGCAGTTCTTTATGGCCAGCATTTGAAATACT 2340
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 ACATAAAGGATCCAGAGGTTACACTTGGGAGAGAAACAAGTGAGGAACATGTCGACATCG 2400
consensus_12956#1 ------------------------------------------------------------
consensus_12956#0 ATTTGGGAAAAGAAGGAAAGGCGAATACAATATCCCGTCAACAGGCAATTATCAAGATGG 2460
consensus_12956#1 ------------------------------TTGCCTACCAATATACCGTAATTAT-ACGG 29
* ** *** * * * ** * * **
consensus_12956#0 ATAAAGGTGGATCTTTCCACATAACGAATATAGGAAAAGCTCCAATCTTCGTCAATAGCA 2520
consensus_12956#1 ANAAAAGCCG-----TCCA---AGCNTTTCTG--------TCACATTGACGCCCAA---A 70
* *** * * **** * * * * ** ** ** * * *
consensus_12956#0 AAGAAGTTCCAT--GCAAC--GAATGCACTCACTTAATTTCTGATGCATTACTTCAGATA 2576
consensus_12956#1 ANGAAGTTCCATTGGCCACCGGAATGCACTCACTTAATTTCTGATGCATTACTTCAGATA 130
* ********** ** ** ***************************************
consensus_12956#0 AGGC-ACATG-AAATTCAT-TTTTCACATCAATCAGGATGCCGTGAGGC-AACATATAGT 2632
consensus_12956#1 AGGCTACATGGAAANNCATGTTTTCACATCAATCAGGATGCCGTGAGGCTAACATATAGT 190
**** ***** *** *** ***************************** **********
consensus_12956#0 TC-GCAGTAGG-AGAGGAACCTCCCAAGGCAAGTACGC-AGTATTTA-ATTGGGATGAAA 2688
consensus_12956#1 TCTNCAGTAGNGAGAGGAACCTCCCAAGGCAAGTACGCTAGTATTTATATTGGGATGAAA 250
** ****** ************************** ******** ************
consensus_12956#0 AGCCATGAATTAAGGTTACGATCAAGCTC-ATG-TGTGAATTTATTGT-CAGTAATATAT 2745
consensus_12956#1 AGCCATGAATTAAGGTTACGATCAAGCTCCATGGTGTGAATTTATTGTGCAGTGAATGAT 310
***************************** *** ************** **** * **
consensus_12956#0 AT-----CGGCAGG-ATA-GAAGTATAT-AGCACCATATCT----AATT-CGGTCCCATC 2792
consensus_12956#1 GATGATGCGGCAGGGATACGAAGTATATGAGCACCACTNATGCTGAATTGCGGTCCCATC 370
******* *** ********* ******* * **** **********
consensus_12956#0 CT-TTGCATGT---AAATCGTTGT-ATATTT-CCATGCTT-ATCATTT-AGTAT-ATAAT 2843
consensus_12956#1 CTGTTGCATGGTGAAATCCGTTGTGATATTTGCCATGCTTGATCATTTGAGTATGATAAT 430
** ******* ** ****** ****** ******** ******* ***** *****
consensus_12956#0 AGATATATGCTCAATTATCGTCTTCAGATCCATATTGTTGTAAGGTGCCACGGTTTTATG 2903
consensus_12956#1 AGATATATGCTCAATTATCGTCTTCAGATCCATATTGTTGTAAGGTGCCACGNTTTTATG 490
**************************************************** *******
consensus_12956#0 TTTGAAATTTGGATTTAAATTTCATCGACAAAAGTTGTTTTACTTAAAAGGGAACTGAAT 2963
consensus_12956#1 TTTGAAATTTGGATTTAAACCTCCTCGAAAAAAAAAAA---------------------- 528
******************* ** **** ****
consensus_12956#0 TCTCAAAGATGAACCCCTTGCATGCTTTAAAAAA 2997
consensus_12956#1 ----------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||