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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12957#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 2232 fasta sequence
[GTCGTCGTCGTCCCCATCTGGATCCCTCCCTCTTCTCCTCCAACCTCGCCATCATTTCCCAGCTCGCTTCCCTTCCCAAGCTCCACCAACCAACCGCCGCCCCACCTCGCCGCCCGCCGCCGAGGCGGAGCTGCGCCGATGAACACGTCGCAGTTCATGGACAAGCAGATCCTCGGCCTCGCGGCCTCCGCCTCCACCTCCTCCGGCGTCGGCGTCGGTGGCGGGGGACCGGAGCTCCTCGATCTGATGAGCCCCAACCCGCAGGAGGAGGGCGAGGACCGCCTCCGCCGCCGCCACAGCTCCTCCAACGGCAGCGCCGACGACGTGCTGCCCAGCTACGACTTCCAGCCCATCCGCACCACCGCCCCCTCCGCCGCCGCCTCCGCCTCCGCCGCGCCGGCCTCGTGGGGGTCCCTCGACTCCGGCTCCAAGGCCGCCTCCGCGTCCTACAACTTGAAGAGTGCTGGCGTATTGGAGCCCCATGTGCTAAAGAAAGTTAGCCACGAGGAGGACAGGAGTAATTTCGGCACGGTTACCATGGCAGACATTGATCGAACCATGAAGAAATATTCTGATAACCTATTGCATGCACTGGAAGGTGTAAGTTCAAGGCTTTCACAGCTGGAGGGTAGAACACACCATCTTGAAAATTCTGTTGACGATTTGAAGATAACAATCGGCAACTATAATGGCAGCACTGATGGAAAACTAAGGCAGCTCGAGAACATGCTGAGGGAGGTCCAAGCTGGTGTGCAGATTTTGCGTGACAAACAGGAAATTGTTGAGACACAGCTCCATCTTGCGAAGCTCCAGCCACCCAAGTCTGATGCCCTGGCATCAGATAATGTTGGATCTTCTCAGACAGATTCGCACCAGCATGCAGTAGCTCCACAGCAGGCAGCCATTCAACCACAGCATCAAGCCCTCACCTCTTCACAACCACTAGCACTTCCTGCCCTTCCTGCTCCAAATGCGCCTCCTCCACCTCCAACGCTTCAAAGCCAACCTCCATCACAGTATCCAGGCCATCTGCCACATTCACAAGTACCACCGGTTCCTCCTTCTGCTCCAGTTCCTTCGGTGCCAGCTTTACCACGGGATCCCTACTATGCTCCACCTGCTCAGCCGACTGAAACCATGCACCAGCAGTATCAGGCCCCTCCAGTTCCACAGCCACAGGCACCCCCAGCGCCGCCTCAGCAGTACCAAACCCCACCCCAATTTCCTCAATATTCACAACCGCCTCAGTCTGGAATGGTTAACCCTTCGACCCCACTCCCACCCGCTGCACCCCAGCAGCCAGAAGAAGCCATGTCGTATGCACCTCCACAGAGCTATCCACCAAATGTCCGCCCTCCTTCACCTTATATGCCACCGCCTAGTGGACCTGCCCCTCCTTTCTATGGGCAAAACCAAAGCATGTATGAACCTCCTGTGGGCAGGCCAAACTCTGGCCCACCACCGTCCTATGGTGCTGGCGGGTACGGGCCACAGGGAGGAAGTGGTTTCTCTGAATCATATGGTTACAGCGGATCCCCTTCACACCGTGGCAATGCAGGGATGAAGTCGTCACCCTCACCTTTTGCTCCCTCAGGGCCATCATCTGGGGGAAGTGGCAACTATGGCAGGCTCCCCACAGCCCAAATACTACCACAAGCAGTGCCTATCAATTCCAGCCCAAGTGGTTCCTCTGGCAACAGGGTGCCGGTTGATGATGTAGTTGAGAAGGTTGCAACAATGGGATTCTCAAGAGAGCAAGTGAGGGCAACTGTGCGGAGGCTGACCGAGAATGGGCAGAATGTGGATCTGAACGTGGTGCTCGACAAGCTGATGAACGACAGCGATGTACAGCAGCCCCAGAAAGGATGGTTCGGTCGATAAGTTGTGATGCGCAT-CATTGGTGCTCGATGTTCTCATTTCTCAGTCTGTGTATAATACTATTGAATATGCTTGCTTGCGCACAACCTCGGAATTCTTCAGATTTTTATATGGCCTGGAACTGGAAGAACTGAACAGGCAATTA-TA-GGTTGGTTT-GCTGCCTGCCCTCAGTTGCTTACCCTTGGTGAAAACATGCAACTACAGTCAACAGGTGTTGTTAATGAGTTTGGTAGTGTCTCTCTGGATACCCTTGTTCTTTTCTATAAATCTATTATATACATGTAATGACGGTATATTAAATCATAACCATGGCTTTCCTGTGTTCTGTCAATAAAACCATCTTGAGCAAAAAAA]
[+] EMBL AK121293 [GTCGTCGTCGTCCCCATCTGGATCCCTCCCTCTTCTCCTCCAACCTCGCCATCATTTCCCAGCTCGCTTCCCTTCCCAAGCTCCACCAACCAACCGCCGCCCCACCTCGCCGCCCGCCGCCGAGGCGGAGCTGCGCCGATGAACACGTCGCAGTTCATGGACAAGCAGATCCTCGGCCTCGCGGCCTCCGCCTCCACCTCCTCCGGCGTCGGCGTCGGTGGCGGGGGACCGGAGCTCCTCGATCTGATGAGCCCCAACCCGCAGGAGGAGGGCGAGGACCGCCTCCGCCGCCGCCACAGCTCCTCCAACGGCAGCGCCGACGACGTGCTGCCCAGCTACGACTTCCAGCCCATCCGCACCACCGCCCCCTCCGCCGCCGCCTCCGCCTCCGCCGCGCCGGCCTCGTGGGGGTCCCTCGACTCCGGCTCCAAGGCCGCCTCCGCGTCCTACAACTTGAAGAGTGCTGGCGTATTGGAGCCCCATGTGCTAAAGAAAGTTAGCCACGAGGAGGACAGGAGTAATTTCGGCACGGTTACCATGGCAGACATTGATCGAACCATGAAGAAATATTCTGATAACCTATTGCATGCACTGGAAGGTGTAAGTTCAAGGCTTTCACAGCTGGAGGGTAGAACACACCATCTTGAAAATTCTGTTGACGATTTGAAGATAACAATCGGCAACTATAATGGCAGCACTGATGGAAAACTAAGGCAGCTCGAGAACATGCTGAGGGAGGTCCAAGCTGGTGTGCAGATTTTGCGTGACAAACAGGAAATTGTTGAGACACAGCTCCATCTTGCGAAGCTCCAGCCACCCAAGTCTGATGCCCTGGCATCAGATAATGTTGGATCTTCTCAGACAGATTCGCACCAGCATGCAGTAGCTCCACAGCAGGCAGCCATTCAACCACAGCATCAAGCCCTCACCTCTTCACAACCACTAGCACTTCCTGCCCTTCCTGCTCCAAATGCGCCTCCTCCACCTCCAACGCTTCAAAGCCAACCTCCATCACAGTATCCAGGCCATCTGCCACATTCACAAGTACCACCGGTTCCTCCTTCTGCTCCAGTTCCTTCGGTGCCAGCTTTACCACGGGATCCCTACTATGCTCCACCTGCTCAGCCGACTGAAACCATGCACCAGCAGTATCAGGCCCCTCCAGTTCCACAGCCACAGGCACCCCCAGCGCCGCCTCAGCAGTACCAAACCCCACCCCAATTTCCTCAATATTCACAACCGCCTCAGTCTGGAATGGTTAACCCTTCGACCCCACTCCCACCCGCTGCACCCCAGCAGCCAGAAGAAGCCATGTCGTATGCACCTCCACAGAGCTATCCACCAAATGTCCGCCCTCCTTCACCTTATATGCCACCGCCTAGTGGACCTGCCCCTCCTTTCTATGGGCAAAACCAAAGCATGTATGAACCTCCTGTGGGCAGGCCAAACTCTGGCCCACCACCGTCCTATGGTGCTGGCGGGTACGGGCCACAGGGAGGAAGTGGTTTCTCTGAATCATATGGTTACAGCGGATCCCCTTCACACCGTGGCAATGCAGGGATGAAGTCGTCACCCTCACCTTTTGCTCCCTCAGGGCCATCATCTGGGGGAAGTGGCAACTATGGCAGGCTCCCCACAGCCCAAATACTACCACAAGCAGTGCCTATCAATTCCAGCCCAAGTGGTTCCTCTGGCAACAGGGTGCCGGTTGATGATGTAGTTGAGAAGGTTGCAACAATGGGATTCTCAAGAGAGCAAGTGAGGGCAACTGTGCGGAGGCTGACCGAGAATGGGCAGAATGTGGATCTGAACGTGGTGCTCGACAAGCTGATGAACGACAGCGATGTACAGCAGCCCCAGAAAGGATGGTTCGGTCGATAAGTTGTGATGCGCAT CATTGGTGCTCGATGTTCTCATTTCTCAGTCTGTGTATAATACTATTGAATATGCTTGCTTGCGCACAACCTCGGAATTCTTCAGATTTTTATATGGCCTGGAACTGGAAGAACTGAACAGGCAATTA TA GGTTGGTTT GCTGCCTGCCCTCAGTTGCTTACCCTTGGTGAAAACATGCAACTACAGTCAACAGGTGTTGTTAATGAGTTTGGTAGTGTCTCTCTGGATACCCTTGTTCTTTTCTATAAATCTATTATATACATGTAATGACGGTATATTAAATCATAACCATGGCTTTCCTGTGTTCTGTCAATAAAAC ]
[+] EMBL AU181693 [ CACCTCGCCGCCCGCCGCCGAGGCGGAGCTGCGCCGATGAACACGTCGCAGTTCATGGACAAGCAGATCCTCGGCCTCGCGGCCTCCGCCTCCACCTCCTCCGGCGTCGGCGTCGGTGGCGGGGGACCGGAGCTCCTCGATCTGATGAGCCCCAACCCGCAGGAGGAGGGCGAGGACCGCCTCCGCCGCCGCCACAGCTCCTCCAACGGCAGCGCCGACGACGTGCTGCCCAGCTACGACTTCCAGCCCATCCGCACCACCGCCCCCTCCGCCGCCGCCTCCGCCTCCGCCGCGCCGGCCTCGTGGGGGTCCCTCGACTCCGGCTCCAAGGCCGCCTCCGCGTCCTACAACTTGAAGAGTGCTGGCGTATTGGAGCCCCATGTGCTAAAGAAAGTTAGCCACGAGGAGGACAGGAGTAATTTCGGCAC ]
[+] EMBL AU093106 [ ACCTCGCCGCCCGCCGCCGAGGCGGAGCTGCGCCGATGAACACGTCGNAGTTCATGGACAAGCAGATCCTCGGCCTCGCGGCCTCCGCCTNCACCTCCTCCGGCGTCGGCGTCGGTGGCGGAGGACCGGAGCTCCTCGATCTGATGAGCCCCAACCCGCAGGAGGAGGGCGAGGACCGNCTCCGTCGCCGGCACAGCTCCTCCAACGGCAGNGCNGACGACGTGCTG CCAGCT ]
[+] EMBL C93596 [ TCGAACCATGAAGAAATATTCTGATAACCTATTGCATGCACTGGAAGGTGTAAGTTCAAGGCTTTCACAGCTGGAGGGTAGAACACACCATCTTGAAAATTCTGTTGACGATTTGAAGATAACAATCGGCAACTATAATGGCAGCACTGATGGAAAACTAAGGCAGCTCGAGAACATGCTGAGGGAGGTCCAAGCTGGTGTGCAGATTTTGCGTGACAAACAGGAAATTGTTGAGACACAGCTCCATCTTGCGANGTCCCAGCCACCCAAGTCTGATGCCCTGGCTGGANTNAATGTTGGATCTTCTCAGACAGATTCGCACCAGCATGCAGTAGCTCCACAGCAGGCAGCCATTCAACCACAGCATCAAGCCCTCACCTCTTCACAACCACTAGCACTTCCTGCCCTTCCTGCTCCAAATGCGCCTCCTCCACCTCCAA ]
[+] EMBL CB650341 [ TGTTCCATCTTCTCAGACAGATTCGCACCAGCATGCAGTAGCTCCACAGCAGGCAGCCATTCAACCACAGCATCAAGCCCTCACCTCTTCACAACCACTAGCACTTCCTGCCCTTCCTGCTCCAAATGCGCCTCCTCCACCTCCAACGCTTCAAAGCCAACCTCCATCACAGTATCCAGGCCATCTGCCACATTCACAAGTACCACCGGTTCCTCCTTCTGCTCCAGTTCCTTCGGTGCCAGCTTTACCACGGGATCCCTACTATGCTCCACCTGCTCAGCCGACTGAAACCATGCACCAGCAGTATCAGGCCCCTCCAGTTCCACAGCCACAGGCACCCCCAGCGCCGCCTCAGCAGTACCAAACCCCACCCCAATTTCCTCAATATTCACAACCGCCTCAGTCTGGAATGGTTAACCCTTCGACCCCACTCCCACCCGCTGCACCCCAGCAGCCAGAAGAAGCCATGTCGTATGCACCTCCACAGAGCTATCCACCAAATGTCCGCCCTCCTTCACCTTATATGCCACCGCCTAGTGGACCTGCCCCTCCTTTCTATGGGCAAAACCAAAGCATGTATGAACCTCCTGTGGGCAGGCCAAACTCTGGCCCACCACCGTCCTATGGTGCTGGCGGGTACGGGCCACAGGGAGGAAGTGGTTTCTCTGAATCATATGGTTACAGCGGATCCCCTTCACACCGTGGCAATGCAGGGATGAAGTCGTCACCCTCACCTTTTGCTCCCTCAGGGCCATCATCTGGGGGAAGT ]
[-] EMBL CB650342 [ CCACAGGGAGGAAGTGGTTTCTCTGAATCATATGGTTACAGCGGATCCCCTTCACACCGTGGCAATGCAGGGATGAAGTCGTCACCCTCACCTTTTGCTCCCTCAGGGCCATCATCTGGGGGAAGTGGCAACTATGGCAGGCTCCCCACAGCCCAAATACTACCACAAGCAGTGCCTATCAATTCCAGCCCAAGTGGTTCCTCTGGCAACAGGGTGCCGGTTGATGATGTAGTTGAGAAGGTTGCAACAATGGGATTCTCAAGAGAGCAAGTGAGGGCAACTGTGCGGAGGCTGACCGAGAATGGGCAGAATGTGGATCTGAACGTGGTGCTCGACAAGCTGATGAACGACAGCGATGTACAGCAGCCCCAGAAAGGATGGTTCGGTCGATAAGTTGTGATGCGCAT CATTGGTGCTCGATGTTCTCATTTCTCAGTCTGTGTATAATACTATTGAATATGCTTGCTTGCGCACAACCTCGGAATTCTTCAGATTTTTATATGGCCTGGAACTGGAAGAACTGAACAGGCAATTA TA GGTTGGTTT GCTGCCTGCCCTCAGTTGCTTACCCTTGGTGAAAACATGCAACTACAGTCAACAGGTGTTGTTAATGAGTTTGGTAGTGTCTCTCTGGATACCCTTGTTCTTTTCTATAAATCTATTATATACATGTAATGACGGTATATTAAATCATAACCATGGCTTTCCTGTGTTCTGTCAATAAAACC ]
[-] EMBL CB650522 [ TGGTTTCTCTGAATCATATGGTTACAGCGGATCCCCTTCACACCGTGGCAATGCAGGGATGAAGTCGTCACCCTCACCTTTTGCTCCCTCAGGGCCATCATCTGGGGGAAGTGGCAACTATGGCAGGCTCCCCACAGCCCAAATACTACCACAAGCAGTGCCTATCAATTCCAGCCCAAGTGGTTCCTCTGGCAACAGGGTGCCGGTTGATGATGTAGTTGAGAAGGTTGCAACAATGGGATTCTCAAGAGAGCAAGTGAGGGCAACTGTGCGGAGGCTGACCGAGAATGGGCAGAATGTGGATCTGAACGTGGTGCTCGACAAGCTGATGAACGACAGCGATGTACAGCAGCCCCAGAAAGGATGGTTCGGTCGATAAGTTGTGATGCGCAT CATTGGTGCTCGATGTTCTCATTTCTCAGTCTGTGTATAATACTATTGAATATGCTTGCTTGCGCACAACCTCGGAATTCTTCAGATTTTTATATGGCCTGGAACTGGAAGAACTGAACAGGCAATTA TA GGTTGGTTT GCTGCCTGCCCTCAGTTGCTTACCCTTGGTGAAAACATGCAACTACAGTCAACAGGTGTTGTTAATGAGTTTGGTAGTGTCTCTGTGGATACCCTTGTTCTTTTCTATAAATCTATTATATACATGTAATGACGGTATATTAAATCATAACCATGGGGGTCCTGTGTTCTGTCAATAAAACCATC ]
[+] EMBL BQ908037 [ CAGAATGTGGATCTGAAC TGGTGCTCGACAAGCTGATGAACGACAGCGATGTACAGCAGCCCCAGAAAGGATGGTTCGGTCGATAAGTTGTGATGCGCAT CATTGGTGCTCGATGTTCTCATTTCTCAGTCTGTGTATAATACTATTGAATATGCTTGCTTGCGCACAACCTCGGAATTCTTCAGATTTTTATATGGCCTGGAACTGGAAGAACTGAACAGGCAATTA TA GGTTGGTTT GCTGCCTGCCCTCAGTTGCTTACCCTTGGTGAAAACATGCAACTACAGTCAACAGGTGTTGTTAATGAGTTTGGTAGTGTCTCTCTGGATACCCTTGTTCTTTTCTATAAATCTATTATATACATGTAATGACGGTATATTAAATCATAACCATGGCTTTCCTGTGTTCTGTCAATAAAACCATCTTGAGCAAAAAAA]
[+] EMBL AU091860 [ CCCCAGAAAGGATGGTTCGGTCGATAAGTTGTGATGCNCATCCATTGGTGCTCGATGTTCTCATNTCNCAGTCTGTGTATAATACTATTGAATATGCTTGCTTGCGCACAACCTCGGAATTCTTCAGATTTTTATATGGCCTGGAACTGGAAGAACTGAACAGGCAATTATTAGGGTTGGTTTGGCTGCNTGCCCTCAGTTGCTTACCCTTGGTGAAAACATGCAACTACAGTCAACAGGTGTTGTTAATGAGTTTGGTAGTGTCTCTCTGGATACCCTTGTTCTTTTCTATAAATCTATTATATACATGTAATGACGGTATATTAAATCATAACCATGGCTTTCCTGTGTTCTGTCAAAAA ]
consensusID : consensus_12957#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1969 fasta sequence
[TGCTCCCCTCCGCAAGCCGCCGCCGCAGCAACTCCGGCGAAATCCCCGGCCACGCGCGCCGCGGGCAGCAGCAACACGGCGGCGCCGACGAGGTGGTGCCCAGCTACGACTTCCAGCCCATCCGCGCCGCTCCCGCCGCCGCGGCGCCGGCCTCCGCGGCGAGCCCTTGGGGGTCGCTCGACTCCAAGGCGGCGTCCTCCAACCTCAAGAGCGCTGGCATGTTGGAGTCTCATGTGCTCAAGAAGGTCAGTCACGAAGAAGAAAGGGGCAACTTCAGTGCAGTCTCCATAGCAGATATTGATCGCACAATGAAGAAATATGCTGATAACCTGCTACATGCACTGGAAAGTGTAAGCTCAAGGCTATCACAGCTAGAGGGCAGAACACACCATCTTGAGAACTCTGTTGGTGAGTTGAAGCTAATAATTGGTAACTACAATGGCAGCACTGATGGAAAACTGAGACAATTTGAGAACACACTGCGTGAGGTTCAAGCTGGTGTGCAGATTTTGCGTGACAAGCAAGAAATTGTTGAGACACAGGTCCAACTTTCAAAGCTCCAATTGTCAAAAGCAGAGGATGCTCAATCAGAAAAGGCTGGTGTTGGTCAGGCAGATTCAAGGCAGCAGCCAACTCTACCCCAACCTCAGCATCAAGCCCCTCCGCCTTCCCATCCACCGGCATTGCCTGCCCTTCCTGCTCCAAATGCACCACCTCCACCTGCACCCCAAAGCCGACCTCCATCACAATTCCCAGGCCATTTACCACATTCCCGGGTGCAATCAGTCCCACCTGCTCCACCGACTCCATTAGCACCAACCATACCACAGGAGTCCTACTATCCCCCGTCAGCAGTACAGCCAACTGACGCCACACACCAGCAGTATCAAGCTCCACCCGCCCCACAGTCGCAGGCACCTCCAGCACCACCACAGCATTATCAAACACCACCTCAGTATGCTCAGTATTCTCAGCCTCCTCCTGCAAGTGCTAACCCCTCAACTGCAGTCCCACCGTCAGTGCATCAGCAGCCTGAAGAAGTAGCAGCGCCGTATGGCCCTCCTCCTCAGAGCTATCCCCCAAATGTGCGCCTGCCATCTCCTTATGTGCCACCACCTAGCGGGCCTGCACCTCCTTTCTATGGTCCAAACCCTGGCATGTATGAGCCTCCAGCAGTCCGGCCAAACTCCGGGCCACCTCCATCCTACAATACTGGATACAAACCACAGGGTGGAGGCGGTTTCCCCGAGCCATATGGTTACAGTGGATCTCCATCTCACCGTGGCAATGCTGGAATGAAGTCGCCCTCGCCGTTTCATCCAACAGGCTCTGCGGGAAGCGGCAACTACAGCAGGCTCCCTACAGCTCAAATGCTGCCCCAAGCCGCGTCAGCGAGCTCCACCCCAAGCGCCTCCTCGGGCAACAGGGTGCCGATTGATGACGTGGTAGACAAGGTTGCCACGATGGGGTTCTCGAGGGAGCAGGTGAGAGCGGCCGTTCGCCAGCTGACCGAGAGCGGTCAGAACGTCGACCTGAACATGGTGCTTGATAAGGTGATGAACGGCGCCGACGCCCAGCCCCAGAGAGGCTGGCACGGGCGTTAAAAGCTCAGCTGCTATCCAGGGCCATGAAGCGCTCTCCCATCAACCTGTGCATATCACTGAACATCCAATCCACGGAGTCATTTTGTGCATTCGCGTGAACGTCAGATTCGGAATTCATATTGTCGATTTGGTGGGGAACAGACCAGGTCTGCTCGATTTGCTGTTGGTGATCTTACAGCAAGTGTTCTTTATCTCTTTGATTCGCCTGGTGTTGGTTGGTACTAGCAGTAGTACTAAAACTTGGTATCTGATCTCCAAAAACGAGTTTTTCTAGAGATGGTGTTATGGTTGTTATCCACTGATGATATGTTAATGATTCACGGGCTGCACTGTTCTGTTTAACTAGTCACGCTGCTAAGCTGCCT]
[+] EMBL AK073439 [TGCTCCCCTCCGCAAGCCGCCGCCGCAGCAACTCCGGCGAAATCCCCGGCCACGCGCGCCGCGGGCAGCAGCAACACGGCGGCGCCGACGAGGTGGTGCCCAGCTACGACTTCCAGCCCATCCGCGCCGCTCCCGCCGCCGCGGCGCCGGCCTCCGCGGCGAGCCCTTGGGGGTCGCTCGACTCCAAGGCGGCGTCCTCCAACCTCAAGAGCGCTGGCATGTTGGAGTCTCATGTGCTCAAGAAGGTCAGTCACGAAGAAGAAAGGGGCAACTTCAGTGCAGTCTCCATAGCAGATATTGATCGCACAATGAAGAAATATGCTGATAACCTGCTACATGCACTGGAAAGTGTAAGCTCAAGGCTATCACAGCTAGAGGGCAGAACACACCATCTTGAGAACTCTGTTGGTGAGTTGAAGCTAATAATTGGTAACTACAATGGCAGCACTGATGGAAAACTGAGACAATTTGAGAACACACTGCGTGAGGTTCAAGCTGGTGTGCAGATTTTGCGTGACAAGCAAGAAATTGTTGAGACACAGGTCCAACTTTCAAAGCTCCAATTGTCAAAAGCAGAGGATGCTCAATCAGAAAAGGCTGGTGTTGGTCAGGCAGATTCAAGGCAGCAGCCAACTCTACCCCAACCTCAGCATCAAGCCCCTCCGCCTTCCCATCCACCGGCATTGCCTGCCCTTCCTGCTCCAAATGCACCACCTCCACCTGCACCCCAAAGCCGACCTCCATCACAATTCCCAGGCCATTTACCACATTCCCGGGTGCAATCAGTCCCACCTGCTCCACCGACTCCATTAGCACCAACCATACCACAGGAGTCCTACTATCCCCCGTCAGCAGTACAGCCAACTGACGCCACACACCAGCAGTATCAAGCTCCACCCGCCCCACAGTCGCAGGCACCTCCAGCACCACCACAGCATTATCAAACACCACCTCAGTATGCTCAGTATTCTCAGCCTCCTCCTGCAAGTGCTAACCCCTCAACTGCAGTCCCACCGTCAGTGCATCAGCAGCCTGAAGAAGTAGCAGCGCCGTATGGCCCTCCTCCTCAGAGCTATCCCCCAAATGTGCGCCTGCCATCTCCTTATGTGCCACCACCTAGCGGGCCTGCACCTCCTTTCTATGGTCCAAACCCTGGCATGTATGAGCCTCCAGCAGTCCGGCCAAACTCCGGGCCACCTCCATCCTACAATACTGGATACAAACCACAGGGTGGAGGCGGTTTCCCCGAGCCATATGGTTACAGTGGATCTCCATCTCACCGTGGCAATGCTGGAATGAAGTCGCCCTCGCCGTTTCATCCAACAGGCTCTGCGGGAAGCGGCAACTACAGCAGGCTCCCTACAGCTCAAATGCTGCCCCAAGCCGCGTCAGCGAGCTCCACCCCAAGCGCCTCCTCGGGCAACAGGGTGCCGATTGATGACGTGGTAGACAAGGTTGCCACGATGGGGTTCTCGAGGGAGCAGGTGAGAGCGGCCGTTCGCCAGCTGACCGAGAGCGGTCAGAACGTCGACCTGAACATGGTGCTTGATAAGGTGATGAACGGCGCCGACGCCCAGCCCCAGAGAGGCTGGCACGGGCGTTAAAAGCTCAGCTGCTATCCAGGGCCATGAAGCGCTCTCCCATCAACCTGTGCATATCACTGAACATCCAATCCACGGAGTCATTTTGTGCATTCGCGTGAACGTCAGATTCGGAATTCATATTGTCGATTTGGTGGGGAACAGACCAGGTCTGCTCGATTTGCTGTTGGTGATCTTACAGCAAGTGTTCTTTATCTCTTTGATTCGCCTGGTGTTGGTTGGTACTAGCAGTAGTACTAAAACTTGGTATCTGATCTCCAAAAACGAGTTTTTCTAGAGATGGTGTTATGGTTGTTATCCACTGATGATATGTTAATGATTCACGGGCTGCACTGTTCTGTTTAACTAGTCACGCTGCTAAGCTGCCT]
consensusID : consensus_12957#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence
[CGATGTNCTCAGTTCNCAGNCTGTGTATAATACTATTGAATATGCNTCTTGCGCACAACCNCGGAATTCNTCAGATTTTTATATGGCCNGGAACTGGAATNACTGAACAGGCAAGTATAGGNTGGCTTGCTGCCTGCTCNCAGTTGCTTACCCTTGGTGAGANCAATGCAACTACAGTCAAACAGGTGTTGTTAATGAGTTTGGTAGTGTCTCTCTGGATACCCTTGTTCTTTTCT]
[-] EMBL D43324 [CGATGTNCTCAGTTCNCAGNCTGTGTATAATACTATTGAATATGCNTCTTGCGCACAACCNCGGAATTCNTCAGATTTTTATATGGCCNGGAACTGGAATNACTGAACAGGCAAGTATAGGNTGGCTTGCTGCCTGCTCNCAGTTGCTTACCCTTGGTGAGANCAATGCAACTACAGTCAAACAGGTGTTGTTAATGAGTTTGGTAGTGTCTCTCTGGATACCCTTGTTCTTTTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12957#0 GTCGTCGTCGTCCCCATCTGGATCCCTCCCTCTTCTCCTCCAACCTCGCCATCATTTCCC 60
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 ------------------------------------------------------------
consensus_12957#0 AGCTCGCTTCCCTTCCCAAGCTCCACCAACCAACCGCCGCCCCACCTCGCCGCCCGCCGC 120
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 ------------------------------------------------------------
consensus_12957#0 CGAGGCGGAGCTGCGCCGATGAACACGTCGCAGTTCATGGACAAGCAGATCCTCGGCCTC 180
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 ------------------------------------------------------------
consensus_12957#0 GCGGCCTCCGCCTCCACCTCCTCCGGCGTCGGCGTCGGTGGCGGGGGACCGGAGCTCCTC 240
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 ------------------------------------------------------------
consensus_12957#0 GATCTGATGAGCCCCAACCCGCAGGAGGAGGGCGAGGACCGCCTCCGCCGCCGCCACAGC 300
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 -------------------------------------TGCTCCCCTCCGCAAGCCGCCGC 23
consensus_12957#0 TCCTCCAACGGCAGCGCCGACGACGTGCTGCCCAGCTACGACTTCCAGCCCATCCGCACC 360
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 CGCAGCAACTCCGGCGAAATCCCCGGCCACGCGCGCCGCGGGCAGCAGCAACACGGCGGC 83
consensus_12957#0 ACCGCCCCCTCCGCCGCCGCCTCCGCCTCCGCCGCGCCGGCCTCGTGGGGGTCCCTCGAC 420
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 GCCGACGAGGTGGTGCCCAGCTACGACTTCCAGCCCATCCGCGCCGCTCCCGCCGCCGCG 143
consensus_12957#0 TCCGGCTCCAAGGCCGCCTCCGCGTCCTACAACTTGAAGAGTGCTGGCGTATTGGAGCCC 480
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 GCGCCGGCCTCCGCGGCGAGCCCTTGGGGGTCGCTCGACTCCAAGGCGGCGTCCTCCAAC 203
consensus_12957#0 CATGTGCTAAAGAAAGTTAGCCACGAGGAGGACAGGAGTAATTTCGGCACGGTTACCATG 540
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 CTCAAGAGCGCTGGCATGTTGGAGTCTCATGTGCTCAAGAAGGTCAGTCACGAAGAAGAA 263
consensus_12957#0 GCAGACATTGATCGAACCATGAAGAAATATTCTGATAACCTATTGCATGCACTGGAAGGT 600
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 AGGGGCAACTTCAGTGCAGTCTCCATAGCAGATATTGATCGCACAATGAAGAAATATGCT 323
consensus_12957#0 GTAAGTTCAAGGCTTTCACAGCTGGAGGGTAGAACACACCATCTTGAAAATTCTGTTGAC 660
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 GATAACCTGCTACATGCACTGGAAAGTGTAAGCTCAAGGCTATCACAGCTAGAGGGCAGA 383
consensus_12957#0 GATTTGAAGATAACAATCGGCAACTATAATGGCAGCACTGATGGAAAACTAAGGCAGCTC 720
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 ACACACCATCTTGAGAACTCTGTTGGTGAGTTGAAGCTAATAATTGGTAACTACAATGGC 443
consensus_12957#0 GAGAACATGCTGAGGGAGGTCCAAGCTGGTGTGCAGATTTTGCGTGACAAACAGGAAATT 780
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 AGCACTGATGGAAAACTGAGACAATTTGAGAACACACTGCGTGAGGTTCAAGCTGGTGTG 503
consensus_12957#0 GTTGAGACACAGCTCCATCTTGCGAAGCTCCAGCCACCCAAGTCTGATGCCCTGGCATCA 840
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 CAGATTTTGCGTGACAAGCAAGAAATTGTTGAGACACAGGTCCAACTTTCAAAGCTCCAA 563
consensus_12957#0 GATAATGTTGGATCTTCTCAGACAGATTCGCACCAGCATGCAGTAGCTCCACAGCAGGCA 900
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 TTGTCAAAAGCAGAGGATGCTCAATCAGAAAAGGCTGGTGTTGGTCAGGCAGATTCAAGG 623
consensus_12957#0 GCCATTCAACCACAGCATCAAGCCCTCACCTCTTCACAACCACTAGCACTTCCTGCCCTT 960
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 CAGCAGCCAACTCTACCCCAACCTCAGCATCAAGCCCCTCCGCCTTCCCATCCACCGGCA 683
consensus_12957#0 CCTGCTCCAAATGCGCCTCCTCCACCTCCAACGCTTCAAAGCCAACCTCCATCACAGTAT 1020
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 TTGCCTGCCCTTCCTGCTCCAAATGCACCACCTCCACCTGCACCCCAAAGCCGACCTCCA 743
consensus_12957#0 CCAGGCCATCTGCCACATTCACAAGTACCACCGGTTCCTCCTTCTGCTCCAGTTCCTTCG 1080
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 TCACAATTCCCAGGCCATTTACCACATTCCCGGGTGCAATCAGTCCCACCTGCTCCACCG 803
consensus_12957#0 GTGCCAGCTTTACCACGGGATCCCTACTATGCTCCACCTGCTCAGCCGACTGAAACCATG 1140
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 ACTCCATTAGCACCAACCATACCACAGGAGTCCTACTATCCCCCGTCAGCAGTACAGCCA 863
consensus_12957#0 CACCAGCAGTATCAGGCCCCTCCAGTTCCACAGCCACAGGCACCCCCAGCGCCGCCTCAG 1200
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 ACTGACGCCACACACCAGCAGTATCAAGCTCCACCCGCCCCACAGTCGCAGGCACCTCCA 923
consensus_12957#0 CAGTACCAAACCCCACCCCAATTTCCTCAATATTCACAACCGCCTCAGTCTGGAATGGTT 1260
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 GCACCACCACAGCATTATCAAACACCACCTCAGTATGCTCAGTATTCTCAGCCTCCTCCT 983
consensus_12957#0 AACCCTTCGACCCCACTCCCACCCGCTGCACCCCAGCAGCCAGAAGAAGCCATGTCGTAT 1320
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 GCAAGTGCTAACCCCTCAACTGCAGTCCCACCGTCAGTGCATCAGCAGCCTGAAGAAGTA 1043
consensus_12957#0 GCACCTCCACAGAGCTATCCACCAAATGTCCGCCCTCCTTCACCTTATATGCCACCGCCT 1380
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 GCAGCGCCGTATGGCCCTCCTCCTCAGAGCTATCCCCCAAATGTGCGCCTGCCATCTCCT 1103
consensus_12957#0 AGTGGACCTGCCCCTCCTTTCTATGGGCAAAACCAAAGCATGTATGAACCTCCTGTGGGC 1440
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 TATGTGCCACCACCTAGCGGGCCTGCACCTCCTTTCTATGGTCCAAACCCTGGCATGTAT 1163
consensus_12957#0 AGGCCAAACTCTGGCCCACCACCGTCCTATGGTGCTGGCGGGTACGGGCCACAGGGAGGA 1500
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 GAGCCTCCAGCAGTCCGGCCAAACTCCGGGCCACCTCCATCCTACAATACTGGATACAAA 1223
consensus_12957#0 AGTGGTTTCTCTGAATCATATGGTTACAGCGGATCCCCTTCACACCGTGGCAATGCAGGG 1560
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 CCACAGGGTGGAGGCGGTTTCCCCGAGCCATATGGTTACAGTGGATCTCCATCTCACCGT 1283
consensus_12957#0 ATGAAGTCGTCACCCTCACCTTTTGCTCCCTCAGGGCCATCATCTGGGGGAAGTGGCAAC 1620
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 GGCAATGCTGGAATGAAGTCGCCCTCGCCGTTTCATCCAACAGGCTCTGCGGGAAGCGGC 1343
consensus_12957#0 TATGGCAGGCTCCCCACAGCCCAAATACTACCACAAGCAGTGCCTATCAATTCCAGCCCA 1680
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 AACTACAGCAGGCTCCCTACAGCTCAAATGCTGCCCCAAGCCGCGTCAGCGAGCTCCACC 1403
consensus_12957#0 AGTGGTTCCTCTGGCAACAGGGTGCCGGTTGATGATGTAGTTGAGAAGGTTGCAACAATG 1740
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 CCAAGCGCCTCCTCGGGCAACAGGGTGCCGATTGATGACGTGGTAGACAAGGTTGCCACG 1463
consensus_12957#0 GGATTCTCAAGAGAGCAAGTGAGGGCAACTGTGCGGAGGCTGACCGAGAATGGGCAGAAT 1800
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 ATGGGGTTCTCGAGGGAGCAGGTGAGAGCGGCCGTTCGCCAGCTGACCGAGAGCGGTCAG 1523
consensus_12957#0 GTGGATCTGAACGTGGTGCTCGACAAGCTGATGAACGACAGCGATGTACAGCAGCCCCAG 1860
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 AACGTCGACCTGAACATGGTGCTTGATAAGGTGATGAACGGCGCCGACGCCCAGCCCCAG 1583
consensus_12957#0 AAAGGATGGTTCGGTCGATAAGTTGTGATGCGCATCATTGGTGCTCGATGTTCTCATTTC 1920
consensus_12957#2 ---------------------------------------------CGATGTNCTCAGTTC 15
consensus_12957#1 AGAGGCTGGCACGGGCGTTAAAAGCTCAGCTGCTATCCAGGGCCATGAAGCGCTCTCCCA 1643
** * ***
consensus_12957#0 TCAGTCTGTGTATAATACT----ATTGAATATGCT---TGCTTGCGCACAACCTCGGAAT 1973
consensus_12957#2 NCAGNCTGTGTATAATACT----ATTGAATATGCN---T-CTTGCGCACAACCNCGGAAT 67
consensus_12957#1 TCAACCTGTGCATATCACTGAACATCCAATCCACGGAGTCATTTTGTGCATTCGCGTGAA 1703
** ***** *** *** ** *** * * ** * ** * ** *
consensus_12957#0 TCTTCAGATT-----TTTATATGGCCTGGAACTGGAAGAACTGAACAGGCAATTATAGGT 2028
consensus_12957#2 TCNTCAGATT-----TTTATATGGCCNGGAACTGGAATNACTGAACAGGCAAGTATAGGN 122
consensus_12957#1 -CGTCAGATTCGGAATTCATATTGTCGATTTGGTGGGGAACAGACCAGGTCTGCTCGATT 1762
* ******* ** **** * * * ** ** ****
consensus_12957#0 TG--GTTTGCTGCCTGCCCTCAGTTGCTTACCCTTGGTGAAAACA-TGCAACTACAGTCA 2085
consensus_12957#2 TG--GCTTGCTGCCTGCTCNCAGTTGCTTACCCTTGGTGAGANCAATGCAACTACAGTCA 180
consensus_12957#1 TGCTGTTGGTGATCTTACAGCAAGTGTTCTTTATCTCTTTGATTCGCCTGGTGTTGGTTG 1822
** * * * ** ** ** * * * * **
consensus_12957#0 --A-CAGGTGTTGTTAATGAGTTTGGTAGTGTCTCTCTGGATACCCTTGTTCTTTTCTAT 2142
consensus_12957#2 --AACAGGTGTTGTTAATGAGTTTGGTAGTGTCTCTCTGGATACCCTTGTTCTTTTCT-- 236
consensus_12957#1 GTACTAGCAGTAGTACTAAAACTTGGTATCTGATCTCCAAAAACGAGTTTTTCTAGAGAT 1882
* ** ** ** * ****** **** * ** * ** *
consensus_12957#0 AAATCTATTATATACATGTAATGACGGTATATTAAATCATAACCATGGCTTTCCTGTGTT 2202
consensus_12957#2 ------------------------------------------------------------
consensus_12957#1 GGTGTTATGGTTGTTATCCACTGATGATATGTTAATGATTCACGGGCTGCACTGTTCTGT 1942
consensus_12957#0 CTGTCAATAAAACCATCTTGAGCAAAAAAA 2232
consensus_12957#2 ------------------------------
consensus_12957#1 TTAACTAGTCACGCTGCTAAGCTGCCT--- 1969
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||