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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12963#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2163 fasta sequence
[CCACGAGCGCGTCCCCGACGAGGCCGTCGCCTCCGACTCCGGCGCTCCCTTCCCTTCCCTTCCGACGCGCGCGACGCCTTCTCCGGGGAGAAAATATGGATTACCTCAAGACGGTGGTTCCATCACAGCTGATGGCCGAGCGCGGCGCCAACCTCGTCGTCATCAACCCAGGATCTTCAAATGTGCGCATTGGGTTCGCAAGTCAGGATGTTCCATTCAATATACCGCACTGCATTGCTCGACATATCACTCAGCAGAAGGATGATACACCAAGGCTTTCTGTGCGAGACAAGATGCTCAACTGCCATGCAACTCCATCGCAGAATGCAGAGCGGGAGAGGGCATATGATATTATTGCATCGCTGCTCAAAATACCCTTTTTGGATGAAGACATGCCTTCAGCGAACCAGGCGTTACCTCCTAAGATGGGACGTGTTGATGCCCTTTCTTCACAGCAAAACAAAGATGATAGTAAATTCACATGGACAGATGTAATGGACAGAAGTATTAAATCATCTACACCAATTGAAAGGCCAGTTGACAAGGATGCTGACGTGGATCCCCTGCAAAGATCAACTCCTGACGATACTGAGCCTAATTCTGAAGAAAACATGTATAAAGAAATAATATTTGGAGAGGATGCTTTGAAAATCCCACCTTCTGAGTCATACTGTCTGAGTCACCCGATCAGGAGAGGCCATTTCAATATTTCTCAGGATTATTCATTACATCAGGTTTTAGAAGATTTGCGCACTATTTGGAACTGGATATTGACAGAAAAATTGCATATAAATCCAAGAGATCGGCATCTGTATTCTGCAATTCTTGTTCTAGGAGAGACATTTGATAACCGAGAAATCAAGGAAATGTTGTCAATCGTACTTTGCGATTTGGGTTTTAGCACAGCAGTGATACATCAGGAAGCTCTAGCTGCAGCATTTGGAAATGGCTTGTCGACATCTTGTGTGGTCAACATTGGCGCGCAAGTTACACAAGTAGTTTGTGTTGAGGATGGTGTTGCTTTACCCCACACAGCCCTGGCGCTTCCATACGGTGGAGATGACATATCTAGATGCCTTCTTTGGGTTCAACGTCGTCATTGCACATGGCCAAACTTCCAAACTGATCCAGTGAACAAGCCTATAGATATGCTAATGCTCAACAAACTAAAAGAGTCATACAGCCAGATAAGAAGTGGAAGTTTTGATGCTGTCAGTGTTGTTCATTCATATGAGCATGAAAAATCAGTTGGTCATCAGAAAACAAAGCTATCGGCTCTGAATGTACCTCCTATGGGGCTACTTTATCCAAGGGTTCTTGTCCCAGAAGAATACCCTCCACCTCCTCGATCTTGGTTCCAAGATTATGATGACATGTTAGAAGATACATGGCAAACAAGTGACAGTCTTTACTCAAGTGGGAATGGTGGGTTCGGTATGTGGGACAATTATCCGATGTTTCCCACCAGATTAAAAATTTGATAACATCGGTCTTGTAGAAGCCATTGTTAGTAGTATCCTTTCGACAGGACGTATTGAGCTTCAAAGGAAGCTATTCTGCAGCATTCAGCTGGTTGGTGGTACAGCTTCAACAGCAGGCCTTGCACCAGTTCTAGAACAAAGGGTTCTCAATACTATTCCATCAAATCAACCGATAGAGAAAGCAGAGGTATTACAGTCGAGGAGTTATCCATTATTTGTCCCATGGAAAGGTGGTGTGATTTTGGGCGTACTTGATATTGGTCGTGATGCTTGGATACATAGAGAAGATTGGGCTAAAAATGGTGTCCACATAGGGAGTGGGAGAAAATATAGGGATTCTTATTTTCTTCAGGCACAGGCAATGTGTTACTACAATTCATAACAGGAACATCCTTGACAGCTTTCCACGACTGTTTAGCAAAACGAGTTACTGAAGGTTGAGGGGCAGCACCGGTCAGCTTCAAGAAAATCTAGGTCCAAACTTGCTGAGAGAAGACGCATGAGACAAGGATGTGCTCGATGGTTTCATCCTCTTGATCACATAGTGGGCAGGTTGTCAGGTGCACTAGTCCGTGTTTGGCAAGACAGTCCGCTAGTATACAGCTTAAACGCTAAGCTATATAATTCATTTTCTAAACATGGTATACAGTGCCAATTTTAAATCATTTATCTTAACTAATTA]
[+] EMBL AK109896 [CCACGAGCGCGTCCCCGACGAGGCCGTCGCCTCCGACTCCGGCGCTCCCTTCCCTTCCCTTCCGACGCGCGCGACGCCTTCTCCGGGGAGAAAATATGGATTACCTCAAGACGGTGGTTCCATCACAGCTGATGGCCGAGCGCGGCGCCAACCTCGTCGTCATCAACCCAGGATCTTCAAATGTGCGCATTGGGTTCGCAAGTCAGGATGTTCCATTCAATATACCGCACTGCATTGCTCGACATATCACTCAGCAGAAGGATGATACACCAAGGCTTTCTGTGCGAGACAAGATGCTCAACTGCCATGCAACTCCATCGCAGAATGCAGAGCGGGAGAGGGCATATGATATTATTGCATCGCTGCTCAAAATACCCTTTTTGGATGAAGACATGCCTTCAGCGAACCAGGCGTTACCTCCTAAGATGGGACGTGTTGATGCCCTTTCTTCACAGCAAAACAAAGATGATAGTAAATTCACATGGACAGATGTAATGGACAGAAGTATTAAATCATCTACACCAATTGAAAGGCCAGTTGACAAGGATGCTGACGTGGATCCCCTGCAAAGATCAACTCCTGACGATACTGAGCCTAATTCTGAAGAAAACATGTATAAAGAAATAATATTTGGAGAGGATGCTTTGAAAATCCCACCTTCTGAGTCATACTGTCTGAGTCACCCGATCAGGAGAGGCCATTTCAATATTTCTCAGGATTATTCATTACATCAGGTTTTAGAAGATTTGCGCACTATTTGGAACTGGATATTGACAGAAAAATTGCATATAAATCCAAGAGATCGGCATCTGTATTCTGCAATTCTTGTTCTAGGAGAGACATTTGATAACCGAGAAATCAAGGAAATGTTGTCAATCGTACTTTGCGATTTGGGTTTTAGCACAGCAGTGATACATCAGGAAGCTCTAGCTGCAGCATTTGGAAATGGCTTGTCGACATCTTGTGTGGTCAACATTGGCGCGCAAGTTACACAAGTAGTTTGTGTTGAGGATGGTGTTGCTTTACCCCACACAGCCCTGGCGCTTCCATACGGTGGAGATGACATATCTAGATGCCTTCTTTGGGTTCAACGTCGTCATTGCACATGGCCAAACTTCCAAACTGATCCAGTGAACAAGCCTATAGATATGCTAATGCTCAACAAACTAAAAGAGTCATACAGCCAGATAAGAAGTGGAAGTTTTGATGCTGTCAGTGTTGTTCATTCATATGAGCATGAAAAATCAGTTGGTCATCAGAAAACAAAGCTATCGGCTCTGAATGTACCTCCTATGGGGCTACTTTATCCAAGGGTTCTTGTCCCAGAAGAATACCCTCCACCTCCTCGATCTTGGTTCCAAGATTATGATGACATGTTAGAAGATACATGGCAAACAAGTGACAGTCTTTACTCAAGTGGGAATGGTGGGTTCGGTATGTGGGACAATTATCCGATGTTTCCCACCAGATTAAAAATTTGATAACATCGGTCTTGTAGAAGCCATTGTTAGTAGTATCCTTTCGACAGGACGTATTGAGCTTCAAAGGAAGCTATTCTGCAGCATTCAGCTGGTTGGTGGTACAGCTTCAACAGCAGGCCTTGCACCAGTTCTAGAACAAAGGGTTCTCAATACTATTCCATCAAATCAACCGATAGAGAAAGCAGAGGTATTACAGTCGAGGAGTTATCCATTATTTGTCCCATGGAAAGGTGGTGTGATTTTGGGCGTACTTGATATTGGTCGTGATGCTTGGATACATAGAGAAGATTGGGCTAAAAATGGTGTCCACATAGGGAGTGGGAGAAAATATAGGGATTCTTATTTTCTTCAGGCACAGGCAATGTGTTACTACAATTCATAACAGGAACATCCTTGACAGCTTTCCACGACTGTTTAGCAAAACGAGTTACTGAAGGTTGAGGGGCAGCACCGGTCAGCTTCAAGAAAATCTAGGTCCAAACTTGCTGAGAGAAGACGCATGAGACAAGGATGTGCTCGATGGTTTCATCCTCTTGATCACATAGTGGGCAGGTTGTCAGGTGCACTAGTCCGTGTTTGGCAAGACAGTCCGCTAGTATACAGCTTAAACGCTAAGCTATATAATTCATTTTCTAAACATGGTATACAGTGCCAATTTTAAATCATTTATCTTAACTAATTA]
[+] EMBL CB648632 [ TCCGACCCTTGAGCTCCCTTCCCTTCCCTTCCGACGCGCGCGACGCCTTCTCCGGGGAGAAAATATGGATTACCTCAAGACGGTGGTTCCATCACAGCTGATGGCCGAGCGCGGCGCCAACCTCGTCGTCATCAACCCAGGATCTTCAAATGTGCGCATTGGGTTCGCAAGTCAGGATGTTCCATTCAATATACCGCACTGCATTGCTCGACATATCACTCAGCAGAAGGATGATACACCAAGGCTTTCTGTGCGAGACAAGATGCTCAACTGCCATGCAACTCCATCGCAGAATGCAGAGCGGGAGAGGGCATATGATATTATTGCATCGCTGCTCAAAATACCCTTTTTGGATGAAGACATGCCTTCAGCGAACCAGGCGTTACCTCCTAAGATGGGACGTGTTGATGCCCTTTCTTCACAGCAAAACAAAGATGATAGTAAATTCACATGGACAGATGTAATGGACAGAAGTATTAAATCATCTACACCAATTGAAAGGCCAGTTGACAAGGATGCTGACGTGGATCCCCTGCAAAGATCAACTCCTGACGATACTGAGCCTAATTCTGAAGAAAACATGTATAAAGAAATAATATTTGGAGAGGATGCTTTGAAAATCCCACCTTCTGAGTCATACTGTCTGAGTCACCCGATCAGGAGAGGCCATTTCAATATTTCTCAGGATTATTCATTACATCAGGTTTTAGAAGATTTGCGCACTATTTGGAACTGGATATTGACAGAAAAATTG ]
[+] EMBL CB639046 [ GACTCCGGCGCTCCCTTCCCTTCCCTTCCGACGCGCGCGACGCCTTCTCCGGGGAGAAAATATGGATTACCTCAAGACGGTGGTTCCATCACAGCTGATGGCCGAGCGCGGCGCCAACCTCGTCGTCATCAACCCAGGATCTTCAAATGTGCGCATTGGGTTCGCAAGTCAGGATGTTCCATTCAATATACCGCACTGCATTGCTCGACATATCACTCAGCAGAAGGATGATACACCAAGGCTTTCTGTGCGAGACAAGATGCTCAACTGCCATGCAACTCCATCGCAGAATGCAGAGCGGGAGAGGGCATATGATATTATTGCATCGCTGCTCAAAATACCCTTTTTGGATGAAGACATGCCTTCAGCGAACCAGGCGTTACCTCCTAAGATGGGACGTGTTGATGCCCTTTCTTCACAGCAAAACAAAGATGATAGTAAATTCACATGGACAGATGTAATGGACAGAAGTATTAAATCATCTACACCAATTGAAAGGCCAGTTGACAAGGATGCTGACGTGGATCCCCTGCAAAGATCAACTCCTGACGATACTGAGCCTAATTCTGAAGAAAACATGTATAAAGAAATAATATTTGGAGAGGATG ]
[+] EMBL AU062567 [ GTCAATCGTACTTTGCGATTTGGGTTTTAGCACAGCAGTGATACATCAGGAAGCTCTAGCTGCAGCATTTGGAAATGGCTTGTCGACATCTTGTGTGGTCAACATTGGCGCGCAAGTTACACAAGTAGTTTGTGTTGAGGATGGTGTTGCTTTACCCCACACAGCCCTGGCGCTTCCATACGGTGGAGATGACATATCTAGATGCCTTCTTTGGGTTCAACGTCGTCATTGCACATGGCCAAACTTCCAAACTGATCCAGTGAACAAGCCTATAGATATGCTAATGCTCAACAAACTAAAAGAGTCATACAGCCAGATAAGAAGTGGAAGTTTTGATGCTGTCAGTGTTGTTCATTCATATGAGCATGAAAAATCAGTTGGTCATCAGAAAACAAAGCTATCGGCTCTGAATGTACCTCCTATGGG ]
[+] EMBL AU062546 [ GTCAATCGTACTTTGCGATTTGGGTTTTAGCACAGCAGTGATACATCAGGAAGCTCTAGCTGCAGCATTTGGAAATGGCTTGTCGACATCTTGTGTGGTCAACATTGGCGCGCAAGTTACACAAGTAGTTTGTGTTGAGGATGGTGTTGCTTTACCCCACACAGCCCTGGCGCTTCCATACGCTGGAGATGACATATCTAGATGCCTNCTTTGGGTTCAACGTCGTCATTGCACATGGCCAAACTTCCAAACTGATCCAGTGAACAAGCCTATAGATATGCTAATGCTCAACAAACTAAAAGAGTCATACAGCCAGATAAGAAGTGGAAGTTTTGAT ]
consensusID : consensus_12963#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2139 fasta sequence
[TCCCCGACGAGGCCGTCGCCTCCGACTCCGGCGCTCCCTTCCCTTCCCTTCCGACGCGCGCGACGCCTTCTCCGGGGAGAAAATATGGATTACCTCAAGACGGTGGTTCCATCACAGCTGATGGCCGAGCGCGGCGCCAACCTCGTCGTCATCAACCCAGGATCTTCAAATGTGCGCATTGGGTTCGCAAGTCAGGATGTTCCATTCAATATACCGCACTGCATTGCTCGACATATCACTCAGCAGAAGGATGATACACCAAGGCTTTCTGTGCGAGACAAGATGCTCAACTGCCATGCAACTCCATCGCAGAATGCAGAGCGGGAGAGGGCATATGATATTATTGCATCGCTGCTCAAAATACCCTTTTTGGATGAAGACATGCCTTCAGCGAACCAGGCGTTACCTCCTAAGATGGGACGTGTTGATGCCCTTTCTTCACAGCAAAACAAAGATGATAGTAAATTCACATGGACAGATGTAATGGACAGAAGTATTAAATCATCTACACCAATTGTTGACAAGGATGCTGACGTGGATCCCCTGCAAAGATCAACTCCTGACGATACTGAGCCTAATTCTGAAGAAAACATGTATAAAGAAATAATATTTGGAGAGGATGCTTTGAAAATCCCACCTTCTGAGTCATACTGTCTGAGTCACCCGATCAGGAGAGGCCATTTCAATATTTCTCAGGATTATTCATTACATCAGGTTTTAGAAGATTTGCGCACTATTTGGAACTGGATATTGACAGAAAAATTGCATATAAATCCAAGAGATCGGCATCTGTATTCTGCAATTCTTGTTCTAGGAGAGACATTTGATAACCGAGAAATCAAGGAAATGTTGTCAATCGTACTTTGCGATTTGGGTTTTAGCACAGCAGTGATACATCAGGAAGCTCTAGCTGCAGCATTTGGAAATGGCTTGTTGACATCTTGTGTGGTCAACATTGGCGCGCAAGTTACACAAGTAGTTTGTGTTGAGGATGGTGTTGCTTTACCCCACACAGCCCTGGCGCTTCCATACGGTGGAGATGACATATCTAGATGCCTTCTTTGGGTTCAACGTCGTCATTGCACATGGCCAAACTTCCAAACTGATCCAGTGAACAAGCCTATAGATATGCTAATGCTCAACAAACTAAAAGAGTCATACAGCCAGATAAGAAGTGGAAGTTTTGATGCTGTCAGTGTTGTTCATTCATATGAGCATGAAAAATCAGTTGGTCATCAGAAAACAAAGCTATCGGCTCTGAATGTACCTCCTATGGGGCTACTTTATCCAAGGGTTCTTGTCCCAGAAGAATACCCTCCACCTCCTCGATCTTGGTTCCAAGATTATGATGACATGTTAGAAGATACATGGCAAACAAGTGACAGTCTTTACTCAAGTGGGAATGGTGGGTTCGGTATGTGGGACAATTATCCGATGTTTCCCACCAGATTAAAAAAGTTTGATAACATCGGTCTTGTAGAAGCCATTGTTAGTAGTATCCTTTCGACAGGACGTATTGAGCTTCAAAGGAAGCTATTCTGCAGCATTCAGCTGGTTGGTGGTACAGCTTCAACAGCAGGCCTTGCACCAGTTCTAGAACAAAGGGTTCTCAATACTATTCCATCAAATCAACCGATAGAGAAAGCAGAGGTATTACAGTCGAGGAGTTATCCATTATTTGTCCCATGGAAAGGTGGTGTGATTTTGGGCGTACTTGATATTGGTCGTGATGCTTGGATACATAGAGAAGATTGGGCTAAAAATGGTGTCCACATAGGGAGTGGGAGAAAATATAGGGATTCTTATTTTCTTCAGGCACAGGCAATGTGTTACTACAATTCATAACAGGTAATTTTTATGAAGACTGTCATGGGATGTAGGGTGAATTGAGTGCACTTCATGGTGGAAACCTTTGGATATAGCAGAAGGTTCATCAAGAAGGGACCCGGATGTACTAACCCTTCAGTTAGAAGTAGCATTGCATGTAGAACATCTATTTTCACAGTAATCTACTAACCCTGTAACTCGTATTGTCGCATCAGGATACACCTCCATGAGATCGTGTAGACATGCTTTGTGAGGTCAGGAAATTGTATGCTGTGCATGAGTTGCATCCGTTATTCTTGACAAAAAAAAAGA]
[+] EMBL AK105285 [TCCCCGACGAGGCCGTCGCCTCCGACTCCGGCGCTCCCTTCCCTTCCCTTCCGACGCGCGCGACGCCTTCTCCGGGGAGAAAATATGGATTACCTCAAGACGGTGGTTCCATCACAGCTGATGGCCGAGCGCGGCGCCAACCTCGTCGTCATCAACCCAGGATCTTCAAATGTGCGCATTGGGTTCGCAAGTCAGGATGTTCCATTCAATATACCGCACTGCATTGCTCGACATATCACTCAGCAGAAGGATGATACACCAAGGCTTTCTGTGCGAGACAAGATGCTCAACTGCCATGCAACTCCATCGCAGAATGCAGAGCGGGAGAGGGCATATGATATTATTGCATCGCTGCTCAAAATACCCTTTTTGGATGAAGACATGCCTTCAGCGAACCAGGCGTTACCTCCTAAGATGGGACGTGTTGATGCCCTTTCTTCACAGCAAAACAAAGATGATAGTAAATTCACATGGACAGATGTAATGGACAGAAGTATTAAATCATCTACACCAATTGTTGACAAGGATGCTGACGTGGATCCCCTGCAAAGATCAACTCCTGACGATACTGAGCCTAATTCTGAAGAAAACATGTATAAAGAAATAATATTTGGAGAGGATGCTTTGAAAATCCCACCTTCTGAGTCATACTGTCTGAGTCACCCGATCAGGAGAGGCCATTTCAATATTTCTCAGGATTATTCATTACATCAGGTTTTAGAAGATTTGCGCACTATTTGGAACTGGATATTGACAGAAAAATTGCATATAAATCCAAGAGATCGGCATCTGTATTCTGCAATTCTTGTTCTAGGAGAGACATTTGATAACCGAGAAATCAAGGAAATGTTGTCAATCGTACTTTGCGATTTGGGTTTTAGCACAGCAGTGATACATCAGGAAGCTCTAGCTGCAGCATTTGGAAATGGCTTGTTGACATCTTGTGTGGTCAACATTGGCGCGCAAGTTACACAAGTAGTTTGTGTTGAGGATGGTGTTGCTTTACCCCACACAGCCCTGGCGCTTCCATACGGTGGAGATGACATATCTAGATGCCTTCTTTGGGTTCAACGTCGTCATTGCACATGGCCAAACTTCCAAACTGATCCAGTGAACAAGCCTATAGATATGCTAATGCTCAACAAACTAAAAGAGTCATACAGCCAGATAAGAAGTGGAAGTTTTGATGCTGTCAGTGTTGTTCATTCATATGAGCATGAAAAATCAGTTGGTCATCAGAAAACAAAGCTATCGGCTCTGAATGTACCTCCTATGGGGCTACTTTATCCAAGGGTTCTTGTCCCAGAAGAATACCCTCCACCTCCTCGATCTTGGTTCCAAGATTATGATGACATGTTAGAAGATACATGGCAAACAAGTGACAGTCTTTACTCAAGTGGGAATGGTGGGTTCGGTATGTGGGACAATTATCCGATGTTTCCCACCAGATTAAAAAAGTTTGATAACATCGGTCTTGTAGAAGCCATTGTTAGTAGTATCCTTTCGACAGGACGTATTGAGCTTCAAAGGAAGCTATTCTGCAGCATTCAGCTGGTTGGTGGTACAGCTTCAACAGCAGGCCTTGCACCAGTTCTAGAACAAAGGGTTCTCAATACTATTCCATCAAATCAACCGATAGAGAAAGCAGAGGTATTACAGTCGAGGAGTTATCCATTATTTGTCCCATGGAAAGGTGGTGTGATTTTGGGCGTACTTGATATTGGTCGTGATGCTTGGATACATAGAGAAGATTGGGCTAAAAATGGTGTCCACATAGGGAGTGGGAGAAAATATAGGGATTCTTATTTTCTTCAGGCACAGGCAATGTGTTACTACAATTCATAACAGGTAATTTTTATGAAGACTGTCATGGGATGTAGGGTGAATTGAGTGCACTTCATGGTGGAAACCTTTGGATATAGCAGAAGGTTCATCAAGAAGGGACCCGGATGTACTAACCCTTCAGTTAGAAGTAGCATTGCATGTAGAACATCTATTTTCACAGTAATCTACTAACCCTGTAACTCGTATTGTCGCATCAGGATACACCTCCATGAGATCGTGTAGACATGCTTTGTGAGGTCAGGAAATTGTATGCTGTGCATGAGTTGCATCCGT ]
[+] EMBL CB682584 [ ccaccttttAAGTGGAAGTTTTGATGCTGGCAGTGTTGTTCATTCATATGAGCATGAAAAATCAGTTGGTCATCACAAAACAAAGCTATCGGCTCTGAATGTACCTCCTATGGGGCTACTTTATCCAAGGGTTCTTGTCCCAGAAGAATACCCTCCACCTCCTCGATCTTGGTTCCAAGATTATGATGACATGTTAGAAGATACATGGCAAACAAGTGACAGTCTTTACTCAAGTGGGAATGGTGGGTTCGGGATGTGGGACAATTATCCGATGTTTCCCACCAGATTAAAAAAGTTTGATAACATCGGTCTTGTAGAAGCCATTGGTAGTAGTATCCTTTCTACAGGACGTATTGAGCTTCAAAGGAAGCTATTCTGCAGCATTCAGCTGGGTGGCGGTACAGCTTCAACAGCAGGCCTTGCACCAGTTCTAGAACAAAGGGTTCTCAATACTATTCCATCAAATCAACCGATAGAGAAAGCAGAGGTATTACAGTCCAGGAGTGATCCATTATTTGTCCCATGGAAAGGTGGTGTGATTTTGGGCGTACTTGATATTGGTCGTGATGCTTGGATACATAGACAAGATTGGGCTATAAATGGCGTCCACATAGGGAGTGGGAGAAAATATACGGATTCT ]
[-] EMBL CB648633 [ TGGGTTCGGTATGTGGGACAATTATCCGATGTTTCCCACCAGATTAAAAAAGTTTGATAACATCGGTCTTGTAGAAGCCATTGTTAGTAGTATCCTTTCGACAGGACGTATTGAGCTTCAAAGGAAGCTATTCTGCAGCATTCAGCTGGTTGGTGGTACAGCTTCAACAGCAGGCCTTGCACCAGTTTTAGAACAAAGGGTTCTCAATACTATTCCATCAAATCAACCGATAGAGAAAGCAGAGGTATTACAGTCGAGGAGTTATCCATTATTTGTCCCATGGAAAGGTGGTGTGATTTTGGGCGTACTTGATATTGGTCGTGATGCTTGGATACATAGAGAAGATTGGGCTAAAAATGGTGTCCACATAGGGAGTGGGAGAAAATATAGGGATTCTTATTTTCTTCAGGCACAGGCAATGTGTTACTACAATTCATAACAGGTAATTTTTATGAAGACTGTCATGGGATGTAGGGTGAATTGAGTGCACTTCATGGTGGAAACCTTTGGATATAGCAGAAGGTTCATCAAGAAGGGACCCGGATGTACTAACCCTTCAGTTAGAAGTAGCATTGCATGTAGAACATCTATTTTCACAGTAATCTACTAACCCTGTAACTCGTATTGTCGCATCAGGATACACCTCCATGAGATCGTGTAGACATGCTTTGTGAGGTCAGGAAATTGTAGGCTGTGCATGAGTTGCATCCGTTATTCTTGACAAAAAAAAAGA]
[-] EMBL CB639047 [ GAAGCTATTCTGCAGCATTCAGCTGGTTGGTGGTACAGCTTCAACAGCAGGCCTTGCACCAGTTTTAGAACAAAGGGTTCTCAATACTATTCCATCAAATCAACCGATAGAGAAAGCAGAGGTATTACAGTCGAGGAGTTATCCATTATTTGTCCCATGGAAAGGTGGTGTGATTTTGGGCGTACTTGATATTGGTCGTGATGCTTGGATACATAGAGAAGATTGGGCTAAAAATGGTGTCCACATAGGGAGTGGGAGAAAATATAGGGATTCTTATTTTCTTCAGGCACAGGCAATGTGTTACTACAATTCATAACAGGTAATTTTTATGAAGACTGTCATGGGATGTAGGGTGAATTGAGTGCACTTCATGGTGGAAACCTTTGGATATAGCAGAAGGTTCATCAAGAAGGGACCCGGATGTACTAACCCTTCAGTTAGAAGTAGCATTGCATGTAGAACATCTATTTTCACAGTAATCTACTAACCCTGTAACTCGTATTGTCGCATCAGGATACACCTCCATGAGATCGTGTAGACATGCTTTGTGAGGTCAGGAAATTGTATGCTGTGCATGAGTTGCATCAGTTATTCT ]
[-] EMBL CB638991 [ CAACCGATAGAGAAAGCAGAGGTATTACAGTCGAGGAGTTATCCATTATTTGTCCCATGGAAAGGTGGTGTGATTTTGGGCGTACTTGATATTGGTCGTGATGCTTGGATACATAGAGAAGATTGGGCTAAAAATGGTGTCCACATAGGGAGTGGGAGAAAATATAGGGATTCTTATTTTCTTCAGGCACAGGCAATGTGTTACTACAATTCATAACAGGTAATTTTTATGAAGACTGTCATGGGATGTAGGGTGAATTGAGTGCACTTCATG ]
consensusID : consensus_12963#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence
[TCCCAAGATTATGATGGACATGTTAGAAGATACATGGCAAACAAGTGACCAGTCTTTACTCAAGTGGGAATGGTGGGTTCGGTATGTGGGACAATTATCCGATGTTTCCCACCAGATTAAAAAAGTTTGATAACATCGGTCTTGTAGAAGCCATTGTTAGTAGTATCCTTTCGACAGGACGTATTGAGCTTCAAAGGAAGCTATTCTGCAGCATTCAGCTGGTTGGTGGTACAGCTTCAACAGCAGGCCTTGCACCAGTTCTAGAACAAAGGGTTCTCAATACTATTCCATCAAATCAACCGATAGAGAAAGCAGAGGTATTACAGTCGAGGAGTTATCCATTATTTGTCCCATGGAAAGGTGGTGTGATTTTGGGCGTACTTGATATTGGTCGTGATGCTTGGATACATAGAGAAGATTGGGCTAAAAATGGTGTCCACATAGGGAGTGGGAGAAAATATAGGGATTCTTATTTTCTTCAGGCACAGGCAATGTGTTACTACAATTCATAACAGGTATCTCTCCACCCTGGTGAGCGCCATGTACTTGTCCCTGTCGTCATTTCCATGCTCAGAGCCTCAGTTATGTTATTTCTTGGTCAATTCTGTAGTTATAAACTTATAATCTACATTTGAGCTATCATGTAGGAAATTTTAAGTGGAAATTTTAGTCTGCCTTTTTAAGGGATAAAAAAA]
[+] EMBL AU091531 [TCCCAAGATTATGATGGACATGTTAGAAGATACATGGCAAACAAGTGACCAGTCTTTACTCAAGTGGGAATGGTGGGTTCGGTATGTGGGACAATTATCCGATGTTTCCCACCAGATTAAAAAAGTTTGATAACATCGGTCTTGTAGAAGCCATTGTTAGTAGTATCCTTTCGACAGGACGTATTGAGCTTCAAAGGAAGCTATTCTGCAGCATTCAGCTGGTTGGTGGTACAGCTTCAACAGCAGGCCTTGCACCAGTTCTAGAACAAAGGGTTCTCAATACTATTCCATCAAATCAACCGATAGAGAAAGCAGAGGTATTACAGTCGAGGAGTTATCCATTATTTGTCCCATGGAAAGGTGGTGTGATTTTGGGCGTACTTGATATTGGTCGTGATGCTTGGATACATAGAGAAGATTGGGCTAAAAATGGTGTCCACATAGGGAGTGGGAGAAAATATAGGGATTCTTATTTTCTTCAGGCACAGGCAATGTGTTACTACAATTCATAACAGGTATCTCTCCACCCTGGTGAGCGCCATGTACTTGTCCCTGTCGTCATTTCCATGCTCAGAGCCTCAGTTATGTTATTTCTTGGTCAATTCTGTAGTTATAAACTTATAATCTACATTTGAGCTATCATGTAGGAAATTTTAAGTGGAAATTTTAGTCTGCCTTTTTAAGGGATAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12963#0 CCACGAGCGCGTCCCCGACGAGGCCGTCGCCTCCGACTCCGGCGCTCCCTTCCCTTCCCT 60
consensus_12963#1 -----------TCCCCGACGAGGCCGTCGCCTCCGACTCCGGCGCTCCCTTCCCTTCCCT 49
consensus_12963#2 ------------------------------------------------------------
consensus_12963#0 TCCGACGCGCGCGACGCCTTCTCCGGGGAGAAAATATGGATTACCTCAAGACGGTGGTTC 120
consensus_12963#1 TCCGACGCGCGCGACGCCTTCTCCGGGGAGAAAATATGGATTACCTCAAGACGGTGGTTC 109
consensus_12963#2 ------------------------------------------------------------
consensus_12963#0 CATCACAGCTGATGGCCGAGCGCGGCGCCAACCTCGTCGTCATCAACCCAGGATCTTCAA 180
consensus_12963#1 CATCACAGCTGATGGCCGAGCGCGGCGCCAACCTCGTCGTCATCAACCCAGGATCTTCAA 169
consensus_12963#2 ------------------------------------------------------------
consensus_12963#0 ATGTGCGCATTGGGTTCGCAAGTCAGGATGTTCCATTCAATATACCGCACTGCATTGCTC 240
consensus_12963#1 ATGTGCGCATTGGGTTCGCAAGTCAGGATGTTCCATTCAATATACCGCACTGCATTGCTC 229
consensus_12963#2 ------------------------------------------------------------
consensus_12963#0 GACATATCACTCAGCAGAAGGATGATACACCAAGGCTTTCTGTGCGAGACAAGATGCTCA 300
consensus_12963#1 GACATATCACTCAGCAGAAGGATGATACACCAAGGCTTTCTGTGCGAGACAAGATGCTCA 289
consensus_12963#2 ------------------------------------------------------------
consensus_12963#0 ACTGCCATGCAACTCCATCGCAGAATGCAGAGCGGGAGAGGGCATATGATATTATTGCAT 360
consensus_12963#1 ACTGCCATGCAACTCCATCGCAGAATGCAGAGCGGGAGAGGGCATATGATATTATTGCAT 349
consensus_12963#2 ------------------------------------------------------------
consensus_12963#0 CGCTGCTCAAAATACCCTTTTTGGATGAAGACATGCCTTCAGCGAACCAGGCGTTACCTC 420
consensus_12963#1 CGCTGCTCAAAATACCCTTTTTGGATGAAGACATGCCTTCAGCGAACCAGGCGTTACCTC 409
consensus_12963#2 ------------------------------------------------------------
consensus_12963#0 CTAAGATGGGACGTGTTGATGCCCTTTCTTCACAGCAAAACAAAGATGATAGTAAATTCA 480
consensus_12963#1 CTAAGATGGGACGTGTTGATGCCCTTTCTTCACAGCAAAACAAAGATGATAGTAAATTCA 469
consensus_12963#2 ------------------------------------------------------------
consensus_12963#0 CATGGACAGATGTAATGGACAGAAGTATTAAATCATCTACACCAATTGAAAGGCCAGTTG 540
consensus_12963#1 CATGGACAGATGTAATGGACAGAAGTATTAAATCATCTACACCAATTG---------TTG 520
consensus_12963#2 ------------------------------------------------------------
consensus_12963#0 ACAAGGATGCTGACGTGGATCCCCTGCAAAGATCAACTCCTGACGATACTGAGCCTAATT 600
consensus_12963#1 ACAAGGATGCTGACGTGGATCCCCTGCAAAGATCAACTCCTGACGATACTGAGCCTAATT 580
consensus_12963#2 ------------------------------------------------------------
consensus_12963#0 CTGAAGAAAACATGTATAAAGAAATAATATTTGGAGAGGATGCTTTGAAAATCCCACCTT 660
consensus_12963#1 CTGAAGAAAACATGTATAAAGAAATAATATTTGGAGAGGATGCTTTGAAAATCCCACCTT 640
consensus_12963#2 ------------------------------------------------------------
consensus_12963#0 CTGAGTCATACTGTCTGAGTCACCCGATCAGGAGAGGCCATTTCAATATTTCTCAGGATT 720
consensus_12963#1 CTGAGTCATACTGTCTGAGTCACCCGATCAGGAGAGGCCATTTCAATATTTCTCAGGATT 700
consensus_12963#2 ------------------------------------------------------------
consensus_12963#0 ATTCATTACATCAGGTTTTAGAAGATTTGCGCACTATTTGGAACTGGATATTGACAGAAA 780
consensus_12963#1 ATTCATTACATCAGGTTTTAGAAGATTTGCGCACTATTTGGAACTGGATATTGACAGAAA 760
consensus_12963#2 ------------------------------------------------------------
consensus_12963#0 AATTGCATATAAATCCAAGAGATCGGCATCTGTATTCTGCAATTCTTGTTCTAGGAGAGA 840
consensus_12963#1 AATTGCATATAAATCCAAGAGATCGGCATCTGTATTCTGCAATTCTTGTTCTAGGAGAGA 820
consensus_12963#2 ------------------------------------------------------------
consensus_12963#0 CATTTGATAACCGAGAAATCAAGGAAATGTTGTCAATCGTACTTTGCGATTTGGGTTTTA 900
consensus_12963#1 CATTTGATAACCGAGAAATCAAGGAAATGTTGTCAATCGTACTTTGCGATTTGGGTTTTA 880
consensus_12963#2 ------------------------------------------------------------
consensus_12963#0 GCACAGCAGTGATACATCAGGAAGCTCTAGCTGCAGCATTTGGAAATGGCTTGTCGACAT 960
consensus_12963#1 GCACAGCAGTGATACATCAGGAAGCTCTAGCTGCAGCATTTGGAAATGGCTTGTTGACAT 940
consensus_12963#2 ------------------------------------------------------------
consensus_12963#0 CTTGTGTGGTCAACATTGGCGCGCAAGTTACACAAGTAGTTTGTGTTGAGGATGGTGTTG 1020
consensus_12963#1 CTTGTGTGGTCAACATTGGCGCGCAAGTTACACAAGTAGTTTGTGTTGAGGATGGTGTTG 1000
consensus_12963#2 ------------------------------------------------------------
consensus_12963#0 CTTTACCCCACACAGCCCTGGCGCTTCCATACGGTGGAGATGACATATCTAGATGCCTTC 1080
consensus_12963#1 CTTTACCCCACACAGCCCTGGCGCTTCCATACGGTGGAGATGACATATCTAGATGCCTTC 1060
consensus_12963#2 ------------------------------------------------------------
consensus_12963#0 TTTGGGTTCAACGTCGTCATTGCACATGGCCAAACTTCCAAACTGATCCAGTGAACAAGC 1140
consensus_12963#1 TTTGGGTTCAACGTCGTCATTGCACATGGCCAAACTTCCAAACTGATCCAGTGAACAAGC 1120
consensus_12963#2 ------------------------------------------------------------
consensus_12963#0 CTATAGATATGCTAATGCTCAACAAACTAAAAGAGTCATACAGCCAGATAAGAAGTGGAA 1200
consensus_12963#1 CTATAGATATGCTAATGCTCAACAAACTAAAAGAGTCATACAGCCAGATAAGAAGTGGAA 1180
consensus_12963#2 ------------------------------------------------------------
consensus_12963#0 GTTTTGATGCTGTCAGTGTTGTTCATTCATATGAGCATGAAAAATCAGTTGGTCATCAGA 1260
consensus_12963#1 GTTTTGATGCTGTCAGTGTTGTTCATTCATATGAGCATGAAAAATCAGTTGGTCATCAGA 1240
consensus_12963#2 ------------------------------------------------------------
consensus_12963#0 AAACAAAGCTATCGGCTCTGAATGTACCTCCTATGGGGCTACTTTATCCAAGGGTTCTTG 1320
consensus_12963#1 AAACAAAGCTATCGGCTCTGAATGTACCTCCTATGGGGCTACTTTATCCAAGGGTTCTTG 1300
consensus_12963#2 ------------------------------------------------------------
consensus_12963#0 TCCCAGAAGAATACCCTCCACCTCCTCGATCTTGGTTCCAAGATTATGATG-ACATGTTA 1379
consensus_12963#1 TCCCAGAAGAATACCCTCCACCTCCTCGATCTTGGTTCCAAGATTATGATG-ACATGTTA 1359
consensus_12963#2 -----------------------------------TCCCAAGATTATGATGGACATGTTA 25
* ************** ********
consensus_12963#0 GAAGATACATGGCAAACAAGTGAC-AGTCTTTACTCAAGTGGGAATGGTGGGTTCGGTAT 1438
consensus_12963#1 GAAGATACATGGCAAACAAGTGAC-AGTCTTTACTCAAGTGGGAATGGTGGGTTCGGTAT 1418
consensus_12963#2 GAAGATACATGGCAAACAAGTGACCAGTCTTTACTCAAGTGGGAATGGTGGGTTCGGTAT 85
************************ ***********************************
consensus_12963#0 GTGGGACAATTATCCGATGTTTCCCACCAGATTAAAAA--TTTGATAACATCGGTCTTGT 1496
consensus_12963#1 GTGGGACAATTATCCGATGTTTCCCACCAGATTAAAAAAGTTTGATAACATCGGTCTTGT 1478
consensus_12963#2 GTGGGACAATTATCCGATGTTTCCCACCAGATTAAAAAAGTTTGATAACATCGGTCTTGT 145
************************************** ********************
consensus_12963#0 AGAAGCCATTGTTAGTAGTATCCTTTCGACAGGACGTATTGAGCTTCAAAGGAAGCTATT 1556
consensus_12963#1 AGAAGCCATTGTTAGTAGTATCCTTTCGACAGGACGTATTGAGCTTCAAAGGAAGCTATT 1538
consensus_12963#2 AGAAGCCATTGTTAGTAGTATCCTTTCGACAGGACGTATTGAGCTTCAAAGGAAGCTATT 205
************************************************************
consensus_12963#0 CTGCAGCATTCAGCTGGTTGGTGGTACAGCTTCAACAGCAGGCCTTGCACCAGTTCTAGA 1616
consensus_12963#1 CTGCAGCATTCAGCTGGTTGGTGGTACAGCTTCAACAGCAGGCCTTGCACCAGTTCTAGA 1598
consensus_12963#2 CTGCAGCATTCAGCTGGTTGGTGGTACAGCTTCAACAGCAGGCCTTGCACCAGTTCTAGA 265
************************************************************
consensus_12963#0 ACAAAGGGTTCTCAATACTATTCCATCAAATCAACCGATAGAGAAAGCAGAGGTATTACA 1676
consensus_12963#1 ACAAAGGGTTCTCAATACTATTCCATCAAATCAACCGATAGAGAAAGCAGAGGTATTACA 1658
consensus_12963#2 ACAAAGGGTTCTCAATACTATTCCATCAAATCAACCGATAGAGAAAGCAGAGGTATTACA 325
************************************************************
consensus_12963#0 GTCGAGGAGTTATCCATTATTTGTCCCATGGAAAGGTGGTGTGATTTTGGGCGTACTTGA 1736
consensus_12963#1 GTCGAGGAGTTATCCATTATTTGTCCCATGGAAAGGTGGTGTGATTTTGGGCGTACTTGA 1718
consensus_12963#2 GTCGAGGAGTTATCCATTATTTGTCCCATGGAAAGGTGGTGTGATTTTGGGCGTACTTGA 385
************************************************************
consensus_12963#0 TATTGGTCGTGATGCTTGGATACATAGAGAAGATTGGGCTAAAAATGGTGTCCACATAGG 1796
consensus_12963#1 TATTGGTCGTGATGCTTGGATACATAGAGAAGATTGGGCTAAAAATGGTGTCCACATAGG 1778
consensus_12963#2 TATTGGTCGTGATGCTTGGATACATAGAGAAGATTGGGCTAAAAATGGTGTCCACATAGG 445
************************************************************
consensus_12963#0 GAGTGGGAGAAAATATAGGGATTCTTATTTTCTTCAGGCACAGGCAATGTGTTACTACAA 1856
consensus_12963#1 GAGTGGGAGAAAATATAGGGATTCTTATTTTCTTCAGGCACAGGCAATGTGTTACTACAA 1838
consensus_12963#2 GAGTGGGAGAAAATATAGGGATTCTTATTTTCTTCAGGCACAGGCAATGTGTTACTACAA 505
************************************************************
consensus_12963#0 TTCATAACAGG-AACATCCTTGACAGCTTTCCACGACTGTTTAGCAAAACGAGT-TACTG 1914
consensus_12963#1 TTCATAACAGGTAATTTTTATGAAGACTGTCATGGGATGTAGGGTGAATTGAGTGCACTT 1898
consensus_12963#2 TTCATAACAGG---TATCTCTCCACCCTGGTGAGCGCCATGTACTTGTCCCTGT---CGT 559
*********** * * ** * ** *
consensus_12963#0 AAGGTTGAGGGGCAGCACCGGTCAGCTTCAAGAAAATCTAGGTCCAAACTTGCTGAGAGA 1974
consensus_12963#1 CATGGTGGAAACCTTTGGATAT-AGCAGAAGGTTCATCAAGAAGGGACCCGGATGTACTA 1957
consensus_12963#2 CATTTCCATGCTCAGAGCC--TCAGTT--ATGTTATTTCTTGGTCAATTCTGTAGTTATA 615
* * * ** * * * * * * *
consensus_12963#0 AGACGCATGAGACAAGGATGTGCTCGATGGTTTCATCCTCTTGATCACATAGTGGGCAGG 2034
consensus_12963#1 --ACCCTTCAGTTAGAAGTAGCATTGC--ATGTAGAACATCTATTTTCACAGTAATCTAC 2013
consensus_12963#2 A-ACTTATAATCTACATTTGAGCTATC--ATGTAGGAAATTTTA------AGTGGAAATT 666
** * * * * * * * * ***
consensus_12963#0 TTGTCAGGTGCACTAGTCCGTGTTTGGCAAGACAGTCCGCTAGTATACAGCTTAAACGCT 2094
consensus_12963#1 TAACCCTGTA-ACTCGTATTGTCGCATCAGGATACACCTCCATGAGATCGTGTAGAC--- 2069
consensus_12963#2 TTAGTCTGC---CTTTTTAAGGGATAAAAAAA---------------------------- 695
* * ** * * *
consensus_12963#0 AAGCTATATAATTCATTTTCTAAACATGGTATACAGTGCCAATTTTAAATCATTTAT-CT 2153
consensus_12963#1 ATGCTTTGTGAGG-----TCAGGAAATTGTATGCTGTGCATGAGTTGCATCCGTTATTCT 2124
consensus_12963#2 ------------------------------------------------------------
consensus_12963#0 TAACTAATTA----- 2163
consensus_12963#1 TGACAAAAAAAAAGA 2139
consensus_12963#2 ---------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||