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Oryza sativa
cluster # 12967 cluster # 12967       Sequences # 11       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12967#0 length = 1164 sequences # 3  
consensus_12967#1 length = 1116 sequences # 6  
consensus_12967#2 length = 844 sequences # 1  
consensus_12967#3 length = 628 sequences # 1  

consensusID : consensus_12967#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1164
fasta sequence
                              [TTCCTCGAGCACTGTTGGCCTACTGGGCACAAACAAAGCCACCCAAAAAAGTTGGGGAGAGGAGAGACCGAGATCGATCCGCACCCACCGCGACAAACGCTCTCCCCTCCCCTCCCCCTCCGCCCTTCGCTCCCATCCGCTCCGCCCCCTCGCCGCGCAGCGCCGGCGGCGAGAAGGTTGAGTTCGTGGGGGGTGTGACCGAACGATGGCGTACCGGGCGGACGACGACTACGACTACCTCTTCAAGGTGGTGCTCATCGGGGACTCCGGGGTCGGGAAGTCGAACCTGCTGTCCCGCTTCACGCGCAACGAGTTCAGCCTCGAGTCCAAGTCCACCAT-CGGCGTCGAGTTCGCCA-CCCGCAGCATCCACGTCGACGACAAGGTCGTC-AAGGCCCAGATCTGGGACACCGCCGGG-CAAGAAAGATATCGAGCTATTACAAGCGCATACTATCGCGGAGCAGTAGGGGCACTCGTTGTCTATGATGTCACGCGACATGTCACCTTTGAGAATGTGGAGAGGTGGATGAGGGAGCTCAAGGATCACACGGACGCCAACATCGTGATCATGCTTGTGGGGAACAAGGCAGATTTGCGCCACCTTAGGGCTGTCTCGACTGAGGATGCGAAAGCATTTGCTGAGAAAGAGAACACTTTCTTCATGGAGACGTCGGCCCTGGAGTCAATGAATGTGGAGAATGCCTTCACTGAAGTGCTCACCCAGATATATCATGTAGTGAGCAAGAAGGCTCTTGACATCGGCGATGACCCAGCTGCACCACCAAAGGGGCAGACCATCAATGTTGGTGGCAAAGATGATGTCTCTGCAGTGAAAAAGTCTGCTTGTTGTTCATCAGCGTAGATCGAAAGGACTTGACAAACATGGAGATACCCGAGGTGGTTGATACTATGCAGTAGGACACAGGATGTTATTGCATTCATAGACCTCATCTGTATTCATGTGTTACTAAGTGTCTCCTTCGTTTTGCCATTTGAAACATTAATTCATTCAGGACATAATCTTGCCGGTATAGTTTAGGGATATGAAATTGTGAGGCCGTCAGATTTTCATACAGGCCATTTGTTTGCTTCTATTATGGTTTGACCGCTTGATTTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACAT]

[+] EMBL AK109344             [TTCCTCGAGCACTGTTGGCCTACTGGGCACAAACAAAGCCACCCAAAAAAGTTGGGGAGAGGAGAGACCGAGATCGATCCGCACCCACCGCGACAAACGCTCTCCCCTCCCCTCCCCCTCCGCCCTTCGCTCCCATCCGCTCCGCCCCCTCGCCGCGCAGCGCCGGCGGCGAGAAGGTTGAGTTCGTGGGGGGTGTGACCGAACGATGGCGTACCGGGCGGACGACGACTACGACTACCTCTTCAAGGTGGTGCTCATCGGGGACTCCGGGGTCGGGAAGTCGAACCTGCTGTCCCGCTTCACGCGCAACGAGTTCAGCCTCGAGTCCAAGTCCACCAT CGGCGTCGAGTTCGCCA CCCGCAGCATCCACGTCGACGACAAGGTCGTC AAGGCCCAGATCTGGGACACCGCCGGG CAAGAAAGATATCGAGCTATTACAAGCGCATACTATCGCGGAGCAGTAGGGGCACTCGTTGTCTATGATGTCACGCGACATGTCACCTTTGAGAATGTGGAGAGGTGGATGAGGGAGCTCAAGGATCACACGGACGCCAACATCGTGATCATGCTTGTGGGGAACAAGGCAGATTTGCGCCACCTTAGGGCTGTCTCGACTGAGGATGCGAAAGCATTTGCTGAGAAAGAGAACACTTTCTTCATGGAGACGTCGGCCCTGGAGTCAATGAATGTGGAGAATGCCTTCACTGAAGTGCTCACCCAGATATATCATGTAGTGAGCAAGAAGGCTCTTGACATCGGCGATGACCCAGCTGCACCACCAAAGGGGCAGACCATCAATGTTGGTGGCAAAGATGATGTCTCTGCAGTGAAAAAGTCTGCTTGTTGTTCATCAGCGTAGATCGAAAGGACTTGACAAACATGGAGATACCCGAGGTGGTTGATACTATGCAGTAGGACACAGGATGTTATTGCATTCATAGACCTCATCTGTATTCATGTGTTACTAAGTGTCTCCTTCGTTTTGCCATTTGAAACATTAATTCATTCAGGACATAATCTTGCCGGTATAGTTTAGGGATATGAAATTGTGAGGCCGTCAGATTTTCATACAGGCCATTTGTTTGCTTCTATTATGGTTTGACCGCTTGATTTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACAT]
[+] EMBL AU057092             [                                                                                                                                                                                                                                                                                                                                     cCCAAGTCCACCATCCGGCGTCGAGTTCCCCACCCCGCAGCACCCACGTCGACGACAAGGTCGTCNAAGCCCCAGATCTGGGACNCCCCCGGGCCAAGAAAGATATCGAGCTATTNCAAGCGCATACTATCCCGGAGCAGTAGGNGCACTCGTTGTCTATGATGTCACGCGACATGTCNCCTTTGAGAATGTGGAGAGGTGGATGAGGGAGCTCAAGGATCACACGGACGCCAACATCGTGATCATGCTTGTGGGGAACAAGGCAGATTTGCGCCACCTTAGGGCTGTCTCGACTGAGGATGCGAAAGCATTTGCTGAGAAAGAGAACACTTTCTTCATGGAGACGTCGGCCCTGGAGTCAATGAATGTGGAGAATGCCTTCACTGAAGTGCTCACCCAGATATATCATGTAGTGAGCAAGAAGGCTCTTGACATCGGCGATGACCCAGCTGCACCACCAAAGGGGCAGACCATCAATGTTGGTGGCAAAGATGATGTCTCTGCAGTGAAAAAGTCTGCTTGTTGTTCATCAGCGTAGATCGAAAGGACTTGACAAACATGGAGATACCCGAGGTGGTTGATACTATGCAGTAGGACACAGGATGTTATTGCATTCATAGACCTCATCTGTATTCATGTGTTACTAAGTGTCTCCTTCGTTTTGCCATTTGAAACATTAATTCATTCAGGACATAAaaaaa                                                                                                                                              ]
[+] EMBL CB096726             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ACATGTCACCTTTGAGAATGTGGAGAGGTGGATGAGGGAGCTCAAGGATCACACGGACGCCAACATCGTGATCATGCTTGTGGGGAACAAGGCAGGTTTGCGCCACCTTAGGGCTGTCTCGACTGAGGATGCGAAAGCATTTGCTGAGAAAGAGAACACTTTCTTCATGGAGACGTCGGCCCTGGAGTCAATGAATGTGGAGAATGCCTTCACTGAAGTGCTCACCCAGATATATCATGTAGTGAGCAAGAAGGCTCTTGACATCGGCGATGACCCAGCTGCACCACCAAAGGGGCAGACCATCAATGTTGGTGGCAAAGATGATGTCTCTGCAGTGAAAAAGTCTGCTTGTTGTTCATCAGCGTAGATCGAAAGGACTTGACAAACATGGAGGTACCCGAGGTGGTTGATACTATGCAGTAGGACACAGGATGTTATTGCATTCATAGACCTCATCTGTATTCATGTGTTACTAAGTGTCTCCTTCGTTTTGCCATTTGAAACATTAATTCATTCAGGACATAATCTTGCCGGTATAGTTTAGGGATATGAAATTGTGAGGCCGTCAGATTTTCATACAGGCCATTTGTTTGCTTCTATTATGGTTTGACCGCTTGATTT                                                   ]


>consensus_12967#0 TTCCTCGAGCACTGTTGGCCTACTGGGCACAAACAAAGCCACCCAAAAAAGTTGGGGAGA GGAGAGACCGAGATCGATCCGCACCCACCGCGACAAACGCTCTCCCCTCCCCTCCCCCTC CGCCCTTCGCTCCCATCCGCTCCGCCCCCTCGCCGCGCAGCGCCGGCGGCGAGAAGGTTG AGTTCGTGGGGGGTGTGACCGAACGATGGCGTACCGGGCGGACGACGACTACGACTACCT CTTCAAGGTGGTGCTCATCGGGGACTCCGGGGTCGGGAAGTCGAACCTGCTGTCCCGCTT CACGCGCAACGAGTTCAGCCTCGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCG CAGCATCCACGTCGACGACAAGGTCGTCAAGGCCCAGATCTGGGACACCGCCGGGCAAGA AAGATATCGAGCTATTACAAGCGCATACTATCGCGGAGCAGTAGGGGCACTCGTTGTCTA TGATGTCACGCGACATGTCACCTTTGAGAATGTGGAGAGGTGGATGAGGGAGCTCAAGGA TCACACGGACGCCAACATCGTGATCATGCTTGTGGGGAACAAGGCAGATTTGCGCCACCT TAGGGCTGTCTCGACTGAGGATGCGAAAGCATTTGCTGAGAAAGAGAACACTTTCTTCAT GGAGACGTCGGCCCTGGAGTCAATGAATGTGGAGAATGCCTTCACTGAAGTGCTCACCCA GATATATCATGTAGTGAGCAAGAAGGCTCTTGACATCGGCGATGACCCAGCTGCACCACC AAAGGGGCAGACCATCAATGTTGGTGGCAAAGATGATGTCTCTGCAGTGAAAAAGTCTGC TTGTTGTTCATCAGCGTAGATCGAAAGGACTTGACAAACATGGAGATACCCGAGGTGGTT GATACTATGCAGTAGGACACAGGATGTTATTGCATTCATAGACCTCATCTGTATTCATGT GTTACTAAGTGTCTCCTTCGTTTTGCCATTTGAAACATTAATTCATTCAGGACATAATCT TGCCGGTATAGTTTAGGGATATGAAATTGTGAGGCCGTCAGATTTTCATACAGGCCATTT GTTTGCTTCTATTATGGTTTGACCGCTTGATTTATTTAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAGGCCACAT



consensusID : consensus_12967#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1116
fasta sequence
                              [AAAGCCACCCAAAAAAGTTGGGGAGAGGAGAGACCGAGATCGATCCGCACCCACCGCGACAAACGCTCTCCCCTCCCCTCCCCTCCCCCTCCGCCCTTCGCTCCCATCCGCTCCGCCCCCTCGCCGCGCAGCGCCGGCGGCGAGAAGGTTGAGTTCGTGGGGGGTGTGACCGAACGATGGCGTACCGGGCGGACGACGACTACGACTACCTCTTCAAGGTGGTGCTCATCGGGGACTCCGGGGTCGGGAAGTCGAACCTGCTGTCCCGCTTCACGCGCAACGAGTTCAGCCTCGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCGCAGCATCCACGTCGACGACAAGGTCGTCA-AGGCCCAGATCTGGGACACCGCCGGGCAAGAAAGATATCGAGCTATTACAAGCGCATACTATCGCGGAGCAG-TAGGGGCACTCGTTGTCTATGATGTCACGCGACATGTCACCTTTGAGAATGTGGAGAGGTGGATGAGGGAGCTCAAGGATCACACGGACGCCAACATCGTGATCATGCTTGTGGGGAACAAGGCAGATTTGCGCCACCTTAGGGCTGTCTCGACTGA-GGATGCGAAAGCATTTGCTGAGAAAGAGAACACTTTCTTCATGGAGACGTCGGCCCTGGAGTCAATGAATGTGGAGAATGCCTTCACTGAAGT-GCTCACCCAGATATATCATGTAGTGAGCAAGAAGGCTCTTGACATCGGCGATGACCCAGCTGCACCACCAAAGGGGCAGACCATCAATGTTGGTGGC-AAAGATGATGTCTCTGCAGTGAAAAAGTCTGCTTGTTGTTCATCAGCGTAGATCGAAAGGACTTGAC-AACATGGAGATACCCGAGGTGGTTGATACTATGCAGTAGGACACAGGATGTTATTGCATTCATAGACCTCATCTGTATTCATGTGTTACTAAGTGTCTCCTTCGTTTTGCCATTTGAAACATTAATTCATTCAGGACATAATCTTGCCGGTATAGTTTAGGGATATGAAATTGTGAGGCCGTCAGATTTTCATACAGGCCATTTGTTTGCTTCTATTATGGTTTGACCGCTTGATTTATTTATATGTTGCTGTCTATTTTTCAGTAAAAA]

[+] EMBL AK073075             [AAAGCCACCCAAAAAAGTTGGGGAGAGGAGAGACCGAGATCGATCCGCACCCACCGCGACAAACGCTCTCCCCTCCCCTCCCCTCCCCCTCCGCCCTTCGCTCCCATCCGCTCCGCCCCCTCGCCGCGCAGCGCCGGCGGCGAGAAGGTTGAGTTCGTGGGGGGTGTGACCGAACGATGGCGTACCGGGCGGACGACGACTACGACTACCTCTTCAAGGTGGTGCTCATCGGGGACTCCGGGGTCGGGAAGTCGAACCTGCTGTCCCGCTTCACGCGCAACGAGTTCAGCCTCGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCGCAGCATCCACGTCGACGACAAGGTCGTCA AGGCCCAGATCTGGGACACCGCCGGGCAAGAAAGATATCGAGCTATTACAAGCGCATACTATCGCGGAGCAG TAGGGGCACTCGTTGTCTATGATGTCACGCGACATGTCACCTTTGAGAATGTGGAGAGGTGGATGAGGGAGCTCAAGGATCACACGGACGCCAACATCGTGATCATGCTTGTGGGGAACAAGGCAGATTTGCGCCACCTTAGGGCTGTCTCGACTGA GGATGCGAAAGCATTTGCTGAGAAAGAGAACACTTTCTTCATGGAGACGTCGGCCCTGGAGTCAATGAATGTGGAGAATGCCTTCACTGAAGT GCTCACCCAGATATATCATGTAGTGAGCAAGAAGGCTCTTGACATCGGCGATGACCCAGCTGCACCACCAAAGGGGCAGACCATCAATGTTGGTGGC AAAGATGATGTCTCTGCAGTGAAAAAGTCTGCTTGTTGTTCATCAGCGTAGATCGAAAGGACTTGACAAACATGGAGATACCCGAGGTGGTTGATACTATGCAGTAGGACACAGGATGTTATTGCATTCATAGACCTCATCTGTATTCATGTGTTACTAAGTGTCTCCTTCGTTTTGCCATTTGAAACATTAATTCATTCAGGACATAATCTTGCCGGTATAGTTTAGGGATATGAAATTGTGAGGCCGTCAGATTTTCATACAGGCCATTTGTTTGCTTCTATTATGGTTTGACCGCTTGATTTATTTATATGTTGCTGTCTATT            ]
[+] EMBL AU057091             [                  TGGGGAGAGGAGAGACCGAGATCGATCCGCACCCACCGCGACAAACGCTCTNCCCTCCCCTCCCCTCCCCCTCCGCCCTTCGCTCCCATCCGCTCCGCCCCCTCGCCGCGCA  GCCGGCGGCGAGAAGGTTGAGTTCGTGGGGGGTGTGACCGAACGATGGCGTACCGGGCGGACGACGACTACGACTACCTCTTCAAGGTGGTGCTCATCGGGGACTCCGGGGTCGGGAAGTCGAACCTGCTGTCCCGCTTCACGCGCAACGAGTTCAGCCTCGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCGCAGCATCCACGTCGACGACAAGGTCGTCA AGGCCCAGATCTGGGACACCGCCGGGCAAGAAAGATATCGAGCTATTACAAGCGCATACTATCGCGGAGCAG TAGGGGCACTCGTTGTCTATGATGTCACGCGACATGTCACCTTTGAGAATGTGGAGAGGTGGATGAGGGAGCTCAAGGATCACACGGACGCCAACATCGTGATCATGCTTGTGGGGAACAAGGCAGATTTGCGCCACCTTAGGGCTGTCTCGACTGA GGATGCGAAAG ATTTGCTGAGAAAGAGAACACTTTCTTCATGGAGACGTCGGCCCTGGAGTCAATGAATGTGGAGAATGCCTTCACTGAAGT GCTCANCCAGATATATCATGTAGTGAGCAAGAAGG TCTTGAC                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL OSC478               [                                                                                                                                                                                                                                                                                                cgCTCGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCGCAGCATCCACGTCGACGACAAGGT G CANAGGCCCAGATCTGGGACACCGCCGGGCAAGAAAGATATCGAGCTATTACAAGCGCATACTATCGCGGA  AGTTAGGGGCACTCGTTGTCTATGATGTCACGCGACATGTCACCTTTGAGAATGTGGAGAGGTGGATGAGGGAGCTCAAGGATCACACGGACGCCAACATCGTGATCATGCTTGTGGGGAACAAGGCAGATTTGCGCCACCTTAGGGCTGTCTCGACTGAGGGATGCG AANATTTTGCTGAGAAAGAGAACACTTTCTTCATGGAGACGTCGGCCCTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL C91586               [                                                                                                                                                                                                                                                                                                           AAGTCCACCATCGGCGTCGAGTTCGCCACCCGCAGCATCCACGTCGACGACAAGGTCGTCA AGGCCCAGATCTGGGACACCGCCGGGCAAGAAAGATATCGAGCTATTACAAGCGCATACTATCGCGGA NAG TAGGGGCACTCGTTGTCTATGATGTCACGCGACATGTCACCTTTGAGAATGTGGAGAGGTGGATGAGGGAGCTCAAGGATCACACGGACGCCAACATCGTGATCATGCTTGTGGGGAACAAGGCAGATTTGCGCCACCTTAGGGCTGTCTCGACTGA GGATGCGAAAGCATTTGCTGAGAAAGAGAACACTTTCTTCATGGAGACGTCGGCCCTGGAGTCAATGAATGTGGAGAATGCCTTCACTGAAGTGGCTCACCCAGATATATCATGTAGTGAGCAAGAAGGCTCTTGACATCGGCGATGACCCAGCTGCACCACCAAAGGGGCAGACCATCAATGTTGGTGGCAAAAGATGATGTCTCTGCAGTGAAAAAGTCTGCTTGTTGTTCATCAGCGTAGATCGAAAGGA                                                                                                                                                                                                                                                                                     ]
[+] EMBL BI806535             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   atCGAAAGCATTT CTGAGAAAGAGAACACTTTCTTCATGGAGACGTCGGCCCTGGAGTCAATGAATGTGGAGAATGCCTTCACTGAAGT GCTCACCCAGATATATCATGTAGTGAGCAAGAAGGCTCTTGACATCGGCGATGACCCAGCTGCACCACCAAAGGGGCAGACCATCAATGTTGGTGGC AAAGATGATGTCTCTGCAGTGAAAAAGTCTGCTTGTTGTTCATCAGCGTAGATCGAAAGGACTTGAC AACATGGAGATACCCGAGGTGGTTGATACTATGCAGTAGGACACAGGATGTTATTGCATTCATAGACCTCATCTGTATTCATGTGTTACTAAGTGTCTCCTTCGTTTTGCCATTTGAAACATTAATTCATTCAGGACATAATCTTGCCGGTATAGTTTAGGGATATGAAATTGTGAGGCCGTCAGATTTTCATACAGGCCATTTGTTTGCTTCTATTATGGTTTGACCGCTTGATTTATTTATATGTTGCTGTCTATTTTTCAGTAAAAA]
[-] EMBL CB238415             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AC AACATGGAGATACCCGAGGTGGTTGATACTATGCAGTAGGACACAGGATGTTATTGCATTCATAGACCTCATCTGTATTCATGTGTTACTAAGTGTCTCCTTCGTTTTGCCATTT                                                                                                                                                           ]


>consensus_12967#1 AAAGCCACCCAAAAAAGTTGGGGAGAGGAGAGACCGAGATCGATCCGCACCCACCGCGAC AAACGCTCTCCCCTCCCCTCCCCTCCCCCTCCGCCCTTCGCTCCCATCCGCTCCGCCCCC TCGCCGCGCAGCGCCGGCGGCGAGAAGGTTGAGTTCGTGGGGGGTGTGACCGAACGATGG CGTACCGGGCGGACGACGACTACGACTACCTCTTCAAGGTGGTGCTCATCGGGGACTCCG GGGTCGGGAAGTCGAACCTGCTGTCCCGCTTCACGCGCAACGAGTTCAGCCTCGAGTCCA AGTCCACCATCGGCGTCGAGTTCGCCACCCGCAGCATCCACGTCGACGACAAGGTCGTCA AGGCCCAGATCTGGGACACCGCCGGGCAAGAAAGATATCGAGCTATTACAAGCGCATACT ATCGCGGAGCAGTAGGGGCACTCGTTGTCTATGATGTCACGCGACATGTCACCTTTGAGA ATGTGGAGAGGTGGATGAGGGAGCTCAAGGATCACACGGACGCCAACATCGTGATCATGC TTGTGGGGAACAAGGCAGATTTGCGCCACCTTAGGGCTGTCTCGACTGAGGATGCGAAAG CATTTGCTGAGAAAGAGAACACTTTCTTCATGGAGACGTCGGCCCTGGAGTCAATGAATG TGGAGAATGCCTTCACTGAAGTGCTCACCCAGATATATCATGTAGTGAGCAAGAAGGCTC TTGACATCGGCGATGACCCAGCTGCACCACCAAAGGGGCAGACCATCAATGTTGGTGGCA AAGATGATGTCTCTGCAGTGAAAAAGTCTGCTTGTTGTTCATCAGCGTAGATCGAAAGGA CTTGACAACATGGAGATACCCGAGGTGGTTGATACTATGCAGTAGGACACAGGATGTTAT TGCATTCATAGACCTCATCTGTATTCATGTGTTACTAAGTGTCTCCTTCGTTTTGCCATT TGAAACATTAATTCATTCAGGACATAATCTTGCCGGTATAGTTTAGGGATATGAAATTGT GAGGCCGTCAGATTTTCATACAGGCCATTTGTTTGCTTCTATTATGGTTTGACCGCTTGA TTTATTTATATGTTGCTGTCTATTTTTCAGTAAAAA



consensusID : consensus_12967#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 844
fasta sequence
                              [CGCGACAAACGCTCTCCCCTCCCCTCCCCCTCCGCCCTTCGCTCCCATCCGCTCCGCCCCCTCGCCGCGCAGCGCCGGCGGCGAGAAGGTTGAGTTCGTGGGGGGTGTGACCGAACGATGGCGTACCGGGCGGACGACGACTACGACTACCTCTTCAAGGTGGTGCTCATCGGGGACTCCGGGGTCGGGAAGTCGAACCTGCTGTCCCGCTTCACGCGCAACGAGTTCAGCCTCGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCGCAGCATCCACGTCGACGACAAGGTCGTCAAGGCCCAGATCTGGGACACCGCCGGGCAAGAAAGATATCGAGCTATTACAAGCGCATACTATCGCGGAGCAGTAGGGGCGCTCGTTGTCTATGATGTCACGCGACATGTCACCTTTGAGAATGTGGAGAGGTGGATGAGGGAGCTCAAGGATCACACGGACGCCAACATTGTGATCATGCTTGTGGGGAACAAGGCAGATTTGCGCCACTCTAGGGCTTGCTCTACTGATGATTCAAAAGCATTTGCTGAAAAAGAGAACACTTTTTTCTTTGAGACGTTTGTCCTGGAGTCAATGAATGGGGAGAATGGTTTAACTGAAGTGCTCAACCAGCAATTTATTTATATGGGCAAAATGTTATTGCTTATTGTTCATGAACCATTGGATCCATCAAAGGGGTTAGACTTTTTATGTTGGGGTACAAAATTATTCTCTCTTCAGAATAAAAGTTGTCTTGTGTTATTTCGCCGTTTTGCAATAGTGTTTGACCCTCTTTGGGATTCCTTAGTGGTTATTCTTATCTTATTAGACCAATTTGGTTATT]

[+] EMBL BE039940             [CGCGACAAACGCTCTCCCCTCCCCTCCCCCTCCGCCCTTCGCTCCCATCCGCTCCGCCCCCTCGCCGCGCAGCGCCGGCGGCGAGAAGGTTGAGTTCGTGGGGGGTGTGACCGAACGATGGCGTACCGGGCGGACGACGACTACGACTACCTCTTCAAGGTGGTGCTCATCGGGGACTCCGGGGTCGGGAAGTCGAACCTGCTGTCCCGCTTCACGCGCAACGAGTTCAGCCTCGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCGCAGCATCCACGTCGACGACAAGGTCGTCAAGGCCCAGATCTGGGACACCGCCGGGCAAGAAAGATATCGAGCTATTACAAGCGCATACTATCGCGGAGCAGTAGGGGCGCTCGTTGTCTATGATGTCACGCGACATGTCACCTTTGAGAATGTGGAGAGGTGGATGAGGGAGCTCAAGGATCACACGGACGCCAACATTGTGATCATGCTTGTGGGGAACAAGGCAGATTTGCGCCACTCTAGGGCTTGCTCTACTGATGATTCAAAAGCATTTGCTGAAAAAGAGAACACTTTTTTCTTTGAGACGTTTGTCCTGGAGTCAATGAATGGGGAGAATGGTTTAACTGAAGTGCTCAACCAGCAATTTATTTATATGGGCAAAATGTTATTGCTTATTGTTCATGAACCATTGGATCCATCAAAGGGGTTAGACTTTTTATGTTGGGGTACAAAATTATTCTCTCTTCAGAATAAAAGTTGTCTTGTGTTATTTCGCCGTTTTGCAATAGTGTTTGACCCTCTTTGGGATTCCTTAGTGGTTATTCTTATCTTATTAGACCAATTTGGTTATT]


>consensus_12967#2 CGCGACAAACGCTCTCCCCTCCCCTCCCCCTCCGCCCTTCGCTCCCATCCGCTCCGCCCC CTCGCCGCGCAGCGCCGGCGGCGAGAAGGTTGAGTTCGTGGGGGGTGTGACCGAACGATG GCGTACCGGGCGGACGACGACTACGACTACCTCTTCAAGGTGGTGCTCATCGGGGACTCC GGGGTCGGGAAGTCGAACCTGCTGTCCCGCTTCACGCGCAACGAGTTCAGCCTCGAGTCC AAGTCCACCATCGGCGTCGAGTTCGCCACCCGCAGCATCCACGTCGACGACAAGGTCGTC AAGGCCCAGATCTGGGACACCGCCGGGCAAGAAAGATATCGAGCTATTACAAGCGCATAC TATCGCGGAGCAGTAGGGGCGCTCGTTGTCTATGATGTCACGCGACATGTCACCTTTGAG AATGTGGAGAGGTGGATGAGGGAGCTCAAGGATCACACGGACGCCAACATTGTGATCATG CTTGTGGGGAACAAGGCAGATTTGCGCCACTCTAGGGCTTGCTCTACTGATGATTCAAAA GCATTTGCTGAAAAAGAGAACACTTTTTTCTTTGAGACGTTTGTCCTGGAGTCAATGAAT GGGGAGAATGGTTTAACTGAAGTGCTCAACCAGCAATTTATTTATATGGGCAAAATGTTA TTGCTTATTGTTCATGAACCATTGGATCCATCAAAGGGGTTAGACTTTTTATGTTGGGGT ACAAAATTATTCTCTCTTCAGAATAAAAGTTGTCTTGTGTTATTTCGCCGTTTTGCAATA GTGTTTGACCCTCTTTGGGATTCCTTAGTGGTTATTCTTATCTTATTAGACCAATTTGGT TATT



consensusID : consensus_12967#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 628
fasta sequence
                              [GTCCGCCATTGGCGACGCAGCCTCGTGCCGAATTCGGCACGAGGGCGACATGTCACCTTTGAGAATGTGGAGAGGTGGATGAGGGAGCTCAAGGATCACACGGACGCCAACATCGTGATCATGCTTGTGGGGAACAAGGCAGATTTGCGCCACCTTAGGGCTGTCTCGACTGAGGATGCGAAAGCATTTGCTGAGAAAGAGAACACTTTCTTCATGGAGACGTCGGCCCTGGAGTCAATGAATGTGGAGAATGCCTTCACTGAAGTGCTCACCCAGATATATCATGTAGTGAGCAAGAAGGCTCTTGACATCGGCGATGACCCAGCTGCACCACCAAAGGGGCAGACCATCAATGTTGGTGGCAAAGATGATGTCTCTGCAGTGAAAAAGTCTGCTTGTTGTTCATCAGCGTAGATCGAAAGGACTTGACAAACATGGAGATACCCGAGGTGGTTGATACTATGCAGTAGGACACAGGATGTTATTGCATTCATAGACCTCATCTGTATTCATGTGTTACTAAGTGTCTCCTTCGTTTTGCCATTTGAAACATTAATTCATTCAGGACATAATCTTGCCGGTATAGTTTAGGGATATGAAATTGTGAGGCCGTCAGATTTTCATACAG]

[-] EMBL CA999217             [GTCCGCCATTGGCGACGCAGCCTCGTGCCGAATTCGGCACGAGGGCGACATGTCACCTTTGAGAATGTGGAGAGGTGGATGAGGGAGCTCAAGGATCACACGGACGCCAACATCGTGATCATGCTTGTGGGGAACAAGGCAGATTTGCGCCACCTTAGGGCTGTCTCGACTGAGGATGCGAAAGCATTTGCTGAGAAAGAGAACACTTTCTTCATGGAGACGTCGGCCCTGGAGTCAATGAATGTGGAGAATGCCTTCACTGAAGTGCTCACCCAGATATATCATGTAGTGAGCAAGAAGGCTCTTGACATCGGCGATGACCCAGCTGCACCACCAAAGGGGCAGACCATCAATGTTGGTGGCAAAGATGATGTCTCTGCAGTGAAAAAGTCTGCTTGTTGTTCATCAGCGTAGATCGAAAGGACTTGACAAACATGGAGATACCCGAGGTGGTTGATACTATGCAGTAGGACACAGGATGTTATTGCATTCATAGACCTCATCTGTATTCATGTGTTACTAAGTGTCTCCTTCGTTTTGCCATTTGAAACATTAATTCATTCAGGACATAATCTTGCCGGTATAGTTTAGGGATATGAAATTGTGAGGCCGTCAGATTTTCATACAG]


>consensus_12967#3 GTCCGCCATTGGCGACGCAGCCTCGTGCCGAATTCGGCACGAGGGCGACATGTCACCTTT GAGAATGTGGAGAGGTGGATGAGGGAGCTCAAGGATCACACGGACGCCAACATCGTGATC ATGCTTGTGGGGAACAAGGCAGATTTGCGCCACCTTAGGGCTGTCTCGACTGAGGATGCG AAAGCATTTGCTGAGAAAGAGAACACTTTCTTCATGGAGACGTCGGCCCTGGAGTCAATG AATGTGGAGAATGCCTTCACTGAAGTGCTCACCCAGATATATCATGTAGTGAGCAAGAAG GCTCTTGACATCGGCGATGACCCAGCTGCACCACCAAAGGGGCAGACCATCAATGTTGGT GGCAAAGATGATGTCTCTGCAGTGAAAAAGTCTGCTTGTTGTTCATCAGCGTAGATCGAA AGGACTTGACAAACATGGAGATACCCGAGGTGGTTGATACTATGCAGTAGGACACAGGAT GTTATTGCATTCATAGACCTCATCTGTATTCATGTGTTACTAAGTGTCTCCTTCGTTTTG CCATTTGAAACATTAATTCATTCAGGACATAATCTTGCCGGTATAGTTTAGGGATATGAA ATTGTGAGGCCGTCAGATTTTCATACAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12967#0      TTCCTCGAGCACTGTTGGCCTACTGGGCACAAACAAAGCCACCCAAAAAAGTTGGGGAGA 60
consensus_12967#3      ------------------------------------------------------------
consensus_12967#1      -----------------------------AAAGCCACCCAAAAAAGTTGGGGAGAGGAGA 31
consensus_12967#2      ------------------------------------------------------------
                                                                                   

consensus_12967#0      GGAGAGACCGAGATCGATCCGCACCCACCGCGACAAACGCTCTCCCCTCCCCTCCCCCTC 120
consensus_12967#3      ------------------------------------------------------------
consensus_12967#1      GACCGAGATCGATCCGCACCCACCGCGACAAACGCTCTCCCCTCCCCTCCCCTCCCCCTC 91
consensus_12967#2      ----------------------------CGCGACAAACGCTCTCCCCTCCCCTCCCCCTC 32
                                                                                   

consensus_12967#0      CGCCCTTCGCTCCCATCCGCTCCGCCCCCTCGCCGCGCAGCGCCGGCGGCGAGAAGGTTG 180
consensus_12967#3      ------------------------------------------------------------
consensus_12967#1      CGCCCTTCGCTCCCATCCGCTCCGCCCCCTCGCCGCGCAGCGCCGGCGGCGAGAAGGTTG 151
consensus_12967#2      CGCCCTTCGCTCCCATCCGCTCCGCCCCCTCGCCGCGCAGCGCCGGCGGCGAGAAGGTTG 92
                                                                                   

consensus_12967#0      AGTTCGTGGGGGGTGTGACCGAACGATGGCGTACCGGGCGGACGACGACTACGACTACCT 240
consensus_12967#3      ------------------------------------------------------------
consensus_12967#1      AGTTCGTGGGGGGTGTGACCGAACGATGGCGTACCGGGCGGACGACGACTACGACTACCT 211
consensus_12967#2      AGTTCGTGGGGGGTGTGACCGAACGATGGCGTACCGGGCGGACGACGACTACGACTACCT 152
                                                                                   

consensus_12967#0      CTTCAAGGTGGTGCTCATCGGGGACTCCGGGGTCGGGAAGTCGAACCTGCTGTCCCGCTT 300
consensus_12967#3      ------------------------------------------------------------
consensus_12967#1      CTTCAAGGTGGTGCTCATCGGGGACTCCGGGGTCGGGAAGTCGAACCTGCTGTCCCGCTT 271
consensus_12967#2      CTTCAAGGTGGTGCTCATCGGGGACTCCGGGGTCGGGAAGTCGAACCTGCTGTCCCGCTT 212
                                                                                   

consensus_12967#0      CACGCGCAACGAGTTCAGCCTCGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCG 360
consensus_12967#3      ------------------------------------------------------------
consensus_12967#1      CACGCGCAACGAGTTCAGCCTCGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCG 331
consensus_12967#2      CACGCGCAACGAGTTCAGCCTCGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCG 272
                                                                                   

consensus_12967#0      CAGCATCCACGTCGACGACAAGGTCGTCAAGGCCCAGATCTGGGACACCGCCGGGCAAGA 420
consensus_12967#3      ------------------------------------------------------------
consensus_12967#1      CAGCATCCACGTCGACGACAAGGTCGTCAAGGCCCAGATCTGGGACACCGCCGGGCAAGA 391
consensus_12967#2      CAGCATCCACGTCGACGACAAGGTCGTCAAGGCCCAGATCTGGGACACCGCCGGGCAAGA 332
                                                                                   

consensus_12967#0      AAGATATCGAGCTATTACAAGCGCATACTATCGCGGAGCAGTAGGGGCACTCGTTGTCTA 480
consensus_12967#3      ----------------------GTCCGCCATTG----GCGACGCAGCCTCGTGCCGAATT 34
consensus_12967#1      AAGATATCGAGCTATTACAAGCGCATACTATCGCGGAGCAGTAGGGGCACTCGTTGTCTA 451
consensus_12967#2      AAGATATCGAGCTATTACAAGCGCATACTATCGCGGAGCAGTAGGGGCGCTCGTTGTCTA 392
                                             *    * ** *    **      * * *  *  *  * 

consensus_12967#0      TGATGTCACG-CGACATGTCACCTTTGAGAATGTGGAGAGGTGGATGAGGGAGCTCAAGG 539
consensus_12967#3      CGGCACGAGGGCGACATGTCACCTTTGAGAATGTGGAGAGGTGGATGAGGGAGCTCAAGG 94
consensus_12967#1      TGATGTCACG-CGACATGTCACCTTTGAGAATGTGGAGAGGTGGATGAGGGAGCTCAAGG 510
consensus_12967#2      TGATGTCACG-CGACATGTCACCTTTGAGAATGTGGAGAGGTGGATGAGGGAGCTCAAGG 451
                        *     * * *************************************************

consensus_12967#0      ATCACACGGACGCCAACATCGTGATCATGCTTGTGGGGAACAAGGCAGATTTGCGCCACC 599
consensus_12967#3      ATCACACGGACGCCAACATCGTGATCATGCTTGTGGGGAACAAGGCAGATTTGCGCCACC 154
consensus_12967#1      ATCACACGGACGCCAACATCGTGATCATGCTTGTGGGGAACAAGGCAGATTTGCGCCACC 570
consensus_12967#2      ATCACACGGACGCCAACATTGTGATCATGCTTGTGGGGAACAAGGCAGATTTGCGCCACT 511
                       ******************* *************************************** 

consensus_12967#0      TTAGGGCTGTCTCGACTGAGGATGCGAAAGCATTTGCTGAGAAAGAGAACACTTTCTTCA 659
consensus_12967#3      TTAGGGCTGTCTCGACTGAGGATGCGAAAGCATTTGCTGAGAAAGAGAACACTTTCTTCA 214
consensus_12967#1      TTAGGGCTGTCTCGACTGAGGATGCGAAAGCATTTGCTGAGAAAGAGAACACTTTCTTCA 630
consensus_12967#2      CTAGGGCTTGCTCTACTGATGATTCAAAAGCATTTGCTGAAAAAGAGAACACTTTTTTCT 571
                        *******  *** ***** *** * ************** ************** *** 

consensus_12967#0      TGGAGACGTCGGCCCTGGAGTCAATGAATGTGGAGAATGCCTTCACTGAAGTGCTCACCC 719
consensus_12967#3      TGGAGACGTCGGCCCTGGAGTCAATGAATGTGGAGAATGCCTTCACTGAAGTGCTCACCC 274
consensus_12967#1      TGGAGACGTCGGCCCTGGAGTCAATGAATGTGGAGAATGCCTTCACTGAAGTGCTCACCC 690
consensus_12967#2      TTGAGACGTTTGTCCTGGAGTCAATGAATGGGGAGAATGGTTTAACTGAAGTGCTCAACC 631
                       * *******  * ***************** ********  ** ************* **

consensus_12967#0      AGATATATCATGTAGTGAGCAAGAAGGCTCTTGACATCGGCGATGACCCAGCTGCACCAC 779
consensus_12967#3      AGATATATCATGTAGTGAGCAAGAAGGCTCTTGACATCGGCGATGACCCAGCTGCACCAC 334
consensus_12967#1      AGATATATCATGTAGTGAGCAAGAAGGCTCTTGACATCGGCGATGACCCAGCTGCACCAC 750
consensus_12967#2      AGCAATTTATTTATATGGGCAAAATGTTATTGCTTATTGTTCATGAACCATTGGATCCAT 691
                       **  ** *  *    ** **** * *    *    ** *   **** ***   *  *** 

consensus_12967#0      CAAAGGGGC-AGACCATCAATGTTGGTG-GCAAAGATGATGTCTCTGCAGTGAAAAAGTC 837
consensus_12967#3      CAAAGGGGC-AGACCATCAATGTTGGTG-GCAAAGATGATGTCTCTGCAGTGAAAAAGTC 392
consensus_12967#1      CAAAGGGGC-AGACCATCAATGTTGGTG-GCAAAGATGATGTCTCTGCAGTGAAAAAGTC 808
consensus_12967#2      CAAAGGGGTTAGACTTTTTATGTTGGGGTACAAAATTATTCTCTCTTCAGAATAAAAGTT 751
                       ********  ****  *  ******* *  ****  *  * ***** ***   ****** 

consensus_12967#0      TGCTTGTTGTTCATCAGCGTAGATCGAAAGGACTTGACAAACATGGAGATACCCGAGGTG 897
consensus_12967#3      TGCTTGTTGTTCATCAGCGTAGATCGAAAGGACTTGACAAACATGGAGATACCCGAGGTG 452
consensus_12967#1      TGCTTGTTGTTCATCAGCGTAGATCGAAAGGACTTGACAA-CATGGAGATACCCGAGGTG 867
consensus_12967#2      GTCTTGTGTTATTTCGCCGTTTTGCAATAGTGTTTGACCCTCTTTGGGATTCCTTAG-TG 810
                         *****  *   **  ***    * * **   *****   * * * *** **  ** **

consensus_12967#0      GTTGATACTATGCAGTAGGACACAGGATGTTATTGCATTCATAGACCTCATCTGTATTCA 957
consensus_12967#3      GTTGATACTATGCAGTAGGACACAGGATGTTATTGCATTCATAGACCTCATCTGTATTCA 512
consensus_12967#1      GTTGATACTATGCAGTAGGACACAGGATGTTATTGCATTCATAGACCTCATCTGTATTCA 927
consensus_12967#2      GTTATTCTTATCTTATTAGACCAATTTGGTTATT-------------------------- 844
                       ***  *  ***    *  ***  *    ******                          

consensus_12967#0      TGTGTTACTAAGTGTCTCCTTCGTTTTGCCATTTGAAACATTAATTCATTCAGGACATAA 1017
consensus_12967#3      TGTGTTACTAAGTGTCTCCTTCGTTTTGCCATTTGAAACATTAATTCATTCAGGACATAA 572
consensus_12967#1      TGTGTTACTAAGTGTCTCCTTCGTTTTGCCATTTGAAACATTAATTCATTCAGGACATAA 987
consensus_12967#2      ------------------------------------------------------------
                                                                                   

consensus_12967#0      TCTTGCCGGTATAGTTTAGGGATATGAAATTGTGAGGCCGTCAGATTTTCATACAGGCCA 1077
consensus_12967#3      TCTTGCCGGTATAGTTTAGGGATATGAAATTGTGAGGCCGTCAGATTTTCATACAG---- 628
consensus_12967#1      TCTTGCCGGTATAGTTTAGGGATATGAAATTGTGAGGCCGTCAGATTTTCATACAGGCCA 1047
consensus_12967#2      ------------------------------------------------------------
                                                                                   

consensus_12967#0      TTTGTTTGCTTCTATTATGGTTTGACCGCTTGATTTATTTAAAAAAAAAAAAAAAAAAAA 1137
consensus_12967#3      ------------------------------------------------------------
consensus_12967#1      TTTGTTTGCTTCTATTATGGTTTGACCGCTTGATTTATTTATATGTTGCTGTCTATTTTT 1107
consensus_12967#2      ------------------------------------------------------------
                                                                                   

consensus_12967#0      AAAAAAAAAAAAAAAAAAAGGCCACAT 1164
consensus_12967#3      ---------------------------
consensus_12967#1      CAGTAAAAA------------------ 1116
consensus_12967#2      ---------------------------
                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)