Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12969 cluster # 12969       Sequences # 11       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12969#0 length = 1725 sequences # 9  
consensus_12969#1 length = 634 sequences # 1  
consensus_12969#2 length = 297 sequences # 1  

consensusID : consensus_12969#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1725
fasta sequence
                              [TTCGATCCAACCCGCGAAGAGAGCCCCCGCTTCTCCCCATCCAATTCCGCCACCTGCTCGTTCTCCCAGTTCCTCCTCGCCGCCCCAGCTGACGACGGCCACCTCTGTTCGATCCACCGCTGACTGGTCCCCCCCGCTCCTGGTTTCGGGGGCGGTTCTTCGATTCTTGAGATCTTAGCTCCTTCTTCGACGGCCTCACCGCTGCCATGGGCAAGAGTAAGAAAAACAAGGGTGGTCGAGGAGGCGGCGGCGGTGGTGGAGAGGACCAATTTGACGGAGGTAGTGACGTGGATAGCGTGAGTTCGGTGTCGACGGCGCTGTCCGACCTCCAGCTCGCGCAGGCCACCGAGCAAGTTAGCTCGCAGGATTTTGTTCTTGACAAATACATCGACGATCTCTATGAGAAGAGGGGATCCACAAGAGAGGCAGCATTAGGCGCTCTTGTTGATGCTTTTGAAAGTTTTGTGCTACTTGATTTAGTGGAAAACAAGTATGCCACACTTTTGAGCCAATTTATCAATTCAATAAAAAAAGGATCCATAAAGGAGGTCTGTCTGGCTTGTCACACCACTGGCTTACTGGCCATTACACTTGGTGCTGGAAGTAGTTCTCATGAAATAATGGATGAATCCCGTCTGCAGCTTCTGAGAGTCCTCCAAACTTGGCCTGATGCTTCAAAAATGATATCTGCACTTGATTGCTTAGCTGTTGTCACATTTGTTGGTGCAACTGATCTATCTGAAACCCAGCTATCTATGAAAGCCATCTGGGATGTGATTCACCCTAAGTCAGGATCCAATGTTGGAATTGTCA-GAAAACCAAAGCCTCCCTTGTTAGCAGCTGCTGTGTCTGCATGGGCACTTCTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTGACTCTTGGAAAGAGTCAATTACATTTCTTTCTGCTCTTCTAGAAGCGGAGGACCGTGCTGTGCGGATGGCTGCTGGTGAAGCATTAGCACTGTGCTTCGAGTTAAAACTGCTTGATGTTTTCTCCAATGAAGAAGTTGAGGTGGACACTGCAGAAGCTAGTGGTTCTAAGAACCAACTTTTCTTGAATATGCAAGCATTGAAGGCCAAAATATCTGGTCTAGTCTATAATCTCTCTATGGAAGCGGGGGGAAGAGGTGCTGACAAGAAAAATCTGAATGATCAAAGAGACTTATTCCAACGAATCTCAGATTTTATTAAGACTGGTGAGTGCCTTGAAGAATCACTTAGAATTGCAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAGTTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAAGACAATGGATTGCTACATGATATCTTTGACATCAAAATGGATAAAACTGAAAACATGTCAACCACTGAAAAGAAAATCTATAGGTCTGGAGAAGAGAAAGGAAGAGCTCTAAAGTTGAATAAGGAGCGTCGTTTAGCCCAAATGAGGAAGCAAAATATCTTAAACGAGCAATAAAGGATAGGGATGTTCTATTCTTCCTGGAATTTTGTATAGCCGAAATCCTATCAGATATTGAGTGTGTTTATAGGCCAATGTTAATTCATTCAAGAGCGTTACAAACTTAATACAATATACAATGTACTTATAAATTAGAACACAATGTTACTGAAAAAACACTTCTGAAGAATTATTTGTAACTTCCTGCTGGTAC]

[+] EMBL AK102551             [TTCGATCCAACCCGCGAAGAGAGCCCCCGCTTCTCCCCATCCAATTCCGCCACCTGCTCGTTCTCCCAGTTCCTCCTCGCCGCCCCAGCTGACGACGGCCACCTCTGTTCGATCCACCGCTGACTGGTCCCCCCCGCTCCTGGTTTCGGGGGCGGTTCTTCGATTCTTGAGATCTTAGCTCCTTCTTCGACGGCCTCACCGCTGCCATGGGCAAGAGTAAGAAAAACAAGGGTGGTCGAGGAGGCGGCGGCGGTGGTGGAGAGGACCAATTTGACGGAGGTAGTGACGTGGATAGCGTGAGTTCGGTGTCGACGGCGCTGTCCGACCTCCAGCTCGCGCAGGCCACCGAGCAAGTTAGCTCGCAGGATTTTGTTCTTGACAAATACATCGACGATCTCTATGAGAAGAGGGGATCCACAAGAGAGGCAGCATTAGGCGCTCTTGTTGATGCTTTTGAAAGTTTTGTGCTACTTGATTTAGTGGAAAACAAGTATGCCACACTTTTGAGCCAATTTATCAATTCAATAAAAAAAGGATCCATAAAGGAGGTCTGTCTGGCTTGTCACACCACTGGCTTACTGGCCATTACACTTGGTGCTGGAAGTAGTTCTCATGAAATAATGGATGAATCCCGTCTGCAGCTTCTGAGAGTCCTCCAAACTTGGCCTGATGCTTCAAAAATGATATCTGCACTTGATTGCTTAGCTGTTGTCACATTTGTTGGTGCAACTGATCTATCTGAAACCCAGCTATCTATGAAAGCCATCTGGGATGTGATTCACCCTAAGTCAGGATCCAATGTTGGAATTGTCA GAAAACCAAAGCCTCCCTTGTTAGCAGCTGCTGTGTCTGCATGGGCACTTCTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTGACTCTTGGAAAGAGTCAATTACATTTCTTTCTGCTCTTCTAGAAGCGGAGGACCGTGCTGTGCGGATGGCTGCTGGTGAAGCATTAGCAC  TGCTTCGAGTTAAAACTGCTTGATGTTTTCTCCAATGAAGAAGTTGAGGTGGACACTGCAGAAGCTAGTGGTTCTAAGAACCAACTTTTCTTGAATATGCAAGCATTGAAGGCCAAAATATCTGGTCTAGTCTATAATCTCTCTATGGAAGCGGGGGGAAGAGGTGCTGACAAGAAAAATCTGAATGATCAAAGAGACTTATTCCAACGAATCTCAGATTTTATTAAGACTGGTGAGTGCCTTGAAGAATCACTTAGAATTGCAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAGTTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAAGACAATGGATTGCTACATGATATCTTTGACATCAAAATGGATAAAACTGAAAACATGTCAACCACTGAAAAGAAAATCTATAGGTCTGGAGAAGAGAAAGGAAGAGCTCTAAAGTTGAATAAGGAGCGTCGTTTAGCCCAAATGAGGAAGCAAAATATCTTAAACGAGCAATAAAGGATAGGGATGTTCTATTCTTCCTGGAATTTTGTATAGCCGAAATCCTATCAGATATTGAGTGTGTTTATAGGCCAATGTTAATTCATTCAAGAGCGTTACAAACTTAATACAATATACAATGTACTTATAAATTAGAACACAATGTTACTGAAAAAACACTTCTGAAGAATTATTTGTAACTTCCTGCTGGTA ]
[+] EMBL CA998763             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGAAAGTTTTGTGCTACTTGATTTAGTGGAATTCCCGTATGCCACACTTTTGAGCCAATTTATCAATTCAATAAAAAAAGGATCCATAAAGGAGGTCTGTCTGGCTTGTCACACCACTGGCTTACTGGCCATTACACTTGGTGCTGGAAGTAGTTCTCATGAAATAATGGATGAATCCCGTCTGCAGCTTCTGAGAGTCCTCCAAACTTGGCCTGATGCTTCAAAAATGATATCTGTTTTTGATTGCTTAGCTGTTGTCACATTTGTTGGTGCAACTGATCTATCTGAAACCCAGCTATCTATGAAAGCCATCTGGGATGTGATTCACCCTAAGTCAGGATCCAATGTTGGAATTGTCA GAAAACCAAAGCCTCCCTTGTTAGCAGCTGCTGTGTCTGCATGGGCACTTCTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTGACTCTTGGAAAGAGTCAATTACATTTCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB662317             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ACTGGCCATTACACTTGGTGCTGGAAGTAGTTCTCATGAAATAATGGATGAATCCCGTCTGCAGCTTCTGAGAGTCCTCCAAACTTGGCCTGATGCTTCAAAAATGATATCTGCACTTGATTGCTTAGCTGTTGTCACATTTGTTGGTGCAACTGATCTATCTGAAACCCAGCTATCTATGAAAGCCATCTGGGATGTGATTCACCCTAAGTCAGGATCCAATGTTGGAATTGTCA GAAAACCAAAGCCTCCCTTGTTAGCAGCTGCTGTGTCTGCATGGGCACTTCTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTGACTCTTGGAAAGAGTCAATTACATTTCTTTCTGCTCTTCTAGAAGCGGAGGACCGTGCTGTGCGGATGGCTGCTGGTGAAGCATTAGCACTGTGCTTCGAGTTAAAACTGCTTGATGTTTTCTCCAATGAAGAAGTTGAGGTGGACACTGCAGAAGCTAGTGGTTCTAAGAACCAACTTTTCTTGAATATGCAAGCATTGAAGGCCAAAATATCTGGTCTAGTCTATAATCTCTCTATGGAAGCGGGGGGAAGAGGTGCTGACAAGAAAAATCTGAATGATCAAAGAGACTTATTCCAACGAATCTCAGATTTTATTAAGACTGGTGAGTGCCTTGAAGAATCACTTAGAATTGCAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAGTTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAAGACAATGGATTGCTACATGATATCTTTGACATCAAAATG                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB640564             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGGCCATTACACTTGGTGCTGGAAGTAGTTCTCATGAAATAATGGATGAATCCCGTCTGCAGCTTCTGAGAGTCCTCCAAACTTGGCCTGATGCTTCAAAAATGATATCTGCACTTGATTGCTTAGCTGTTGTCACATTTGTTGGTGCAACTGATCTATCTGAAACCCAGCTATCTATGAAAGCCATCTGGGATGTGATTCACCCTAAGTCAGGATCCAATGTTGGAATTGTCACCCCAACCAAAGCCTCCCTTGTTAGCAGCTGCTGTGTCTGCATGGGCACTTCTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTGACTCTTGGAAAGAGTCAATTACATTTCTTTCTGCTCTTCTAGAAGCGGAGGACCGTGCTGTGCGGATGGCTGCTGGTGAAGCATTAGCACTGTGCTTCGAGTTAAAACTGCTTGATGTTTTCTCCAATGAAGAAGTTGAGGTGGACACTGCAGAAGCTAGTGGTTCTAAGAACCAACTTTTCTTGAATATGCAAGCATTGAAGGCCAAAATATCTGGTCTAGTCTATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB667779             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GCCATTACACTTGGTGCTGGAAGTAGTTCTCATGAAATAATGGATGAATCCCGTCTGCAGCTTCTGAGAGTCCTCCAAACTTGGCCTGATGCTTCAAAAATGATATCTGCACTTGATTGCTTAGCTGTTGTCACATTTGTTGGTGCAACTGATCTATCTGAAACCCAGCTATCTATGAAAGCCATCTGGGATGTGATTCACCCTAAGTCAGGATCCAATGTTGGAATTGTCA GAAAACCAAAGCCTCCCTTGTTAGCAGCTGCTGTGTCTGCATGGGCACTTCTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTGACTCTTGGAAAGAGTCAATTACATTTCTTTCTGCTCTTCTAGAAGCGGAGGACCGTGCTGTGCGGATGGCTGCTGGTGAAGCATTAGCACTGTGCTTCGAGTTAAAACTGCTTGATGTTTTCTCCAATGAAGAAGTTGAGGTGGACACTGCAGAAGCTAGTGGTTCTAAGAACCAACTTTTCTTGAATATGCAAGCATTGAAGGCCAAAATATCTGGTCTAGTCTATAATCTCTCTATGGAAGCGGGGGGAAGAGGTGCTGACAAGAAAAATCTGAATGATCAAAGAGACTTATTCCAACGAATCTCAGATTTTATTAAGACTGGTGAGTGCCTTGAAGAATCACTTAGAATTGCAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAGTTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAAGACAATGGATTGCTACATGATATCTTTGACATCAAAATGGATAAAACTGAAAAC                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB667869             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GCCATTACACTTGGTGCTGGAAGTAGTTCTCATGAAATAATGGATGAATCCCGTCTGCAGCTTCTGAGAGTCCTCCAAACTTGGCCTGATGCTTCAAAAATGATATCTGCACTTGATTGCTTAGCTGTTGTCACATTTGTTGGTGCAACTGATCTATCTGAAACCCAGCTATCTATGAAAGCCATCTGGGATGTGATTCACCCTAAGTCAGGATCCAATGTTGGAATTGTCA GAAAACCAAAGCCTCCCTTGTTAGCAGCTGCTGTGTCTGCATGGGCACTTCTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTGACTCTTGGAAAGAGTCAATTACATTTCTTTCTGCTCTTCTAGAAGCGGAGGACCGTGCTGTGCGGATGGCTGCTGGTGAAGCATTAGCACTGTGCTTCGAGTTAAAACTGCTTGATGTTTTCTCCAATGAAGAAGTTGAGGTGGACACTGCAGAAGCTAGTGGTTCTAAGAACCAACTTTTCTTGAATATGCAAGCATTGAAGGCCAAAATATCTGGTCTAGTCTATAATCTCTCTATGGAAGCGGGGGGAAGAGGTGCTGACAAGAAAAATCTGAATGATCAAAGAGACTTATTCCAACGAATCTCAGATTTTATTAAGACTGGTGAGTGCCTTGAAGAATCACTTAGAATTGCAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAGTTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTCTGAAG                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB678666             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCTGCCATTAGTTCTCATGAAATAATGGATGAATCCCGTCTGCAGCTTCTGAGAGTCCTCCAAACTTGGCCTGATGCCTCAAAAATGATATCTGCACTTGATTGCTTAGCTGTTGTCACATTTGTTGGTGCAACTGATCTATCTGAAACCCAGCTATCTATGAAAGCCATCTGGGATGTGATTCACCCTAAGTCAGGATCCAATGTTGGAATTGTCA GAAAACCAAAGCCTCCCTTGTTAGCAGCTGCTGTGTCTGCATGGGCACTTCTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTGACTCTTGGAAAGAGTCAATTACATTTCTTTCTGCTCTTCTAGAAGCGGAGGACCGTGCTGTGCGGATGGCTGCTGGTGAAGCATTAGCACTGTGCTTCGAGTTAAAACTGCTTGATGTTTTCTCCAATGAAGAAGTTGAGGTGGACACTGCAGAAGCTAGTGGTTCTAAGAACCAACTTTTCTTGAATATGCAAGCATTGAAGGCCAAAATATCTGGTCTAGTCTATAATCTCTCTATGGAAGCGGGGGGAAGAGGTGCTGACAAGAAAAATCTGAATGATCAAAGAGACTTATTCCAACGAATCTCAGATTTTATTAAGACTGGTGAGTGCCTTGAAGAATCACTTAGAATTGCAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAGTTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAAGACAATGGATTGCTACATGATATCTTTGACATCAAAATG                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB667870             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      atacCATTTCTTTCTGCTCTTCTAGAAGCGGAGGACCGTGCTGTGCGGATGGCTGCTGGTGAAGCATTAGCACTGTGCTTCGAGTTAAAACTGCTTGATGTTTTCTCCAATGAAGAAGTTGAGGTGGACACTGCAGAAGCTAGTGGTTCTAAGAACCAACTTTTCTTGAATATGCAAGCATTGAAGGCCAAAATATCTGGTCTAGTCTATAATCTCTCTATGGAAGCGGGGGGAAGAGGTGCTGACAAGAAAAATCTGAATGATCAAAGAGACTTATTCCAACGAATCTCAGATTTTATTAAGACTGGTGAGTGCCTTGAAGAATCACTTAGAATTGCAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAGTTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTTTGAAGCATGCACAAGACAATGGATTGCTACATGATATCTTTGACATCAAAATGGATAAAACTGAAAACATGTCACCCCCTGAAAAGAAAATCTATAGGTCTGGAGAAGAGAAAGGAAGAGCTCTAAAGTTGAATAAGGAGCGTCGTTTAGCCCAAATGAGGAAGCAAAATATCTTAAACGAGCAATAAAGGATAGGGATGTTCTATTCTTCCTGGAATTTTGTATAGCCGAAATCCTATCAGATATTGAGTGTGTTTATAGGCCAATGTTAATTCATTCAAGAGCGTTACAAACTTAATACAATATACAATGTACTTATAAATTAGAACCCAATGTTACTGAAAAAACACTTCTGAAGAATTATTTGTAACTTCCTGCTGGTAC]
[-] EMBL CB667780             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGCTGCTGGTGAAGCATTAGCACTGTGCTTCGAGTTAAAACTGCTTGATGTTTTCTCCAATGAAGAAGTTGAGGTGGACACTGCAGAAGCTAGTGGTTCTAAGAACCAACTTTTCTTGAATATGCAAGCATTGAAGGCCAAAATATCTGGTCTAGTCTATAATCTCTCTATGGAAGCGGGGGGAAGAGGTGCTGACAAGAAAAATCTGAATGATCAAAGAGACTTATTCCAACGAATCTCAGATTTTATTAAGACTGGTGAGTGCCTTGAAGAATCACTTAGAATTGCAGGCAAGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAGTTGAACTATTTGAGGCGGTTCCTTGGGCGAGGATTTTTGAAGCATGCACAAGACAATGGATTGCTACATGATATCTTTGACATCAAAATGGATAAAACTGAAAACATGTCAACCACTGAAAAGAAAATCTATAGGTCTGGAGAAGAGAAAGGAAGAGCTTTAAAGTTGAATAAGGAGCGTCGTTTAGCCCAAATGAGGAAGCAAAATATCTTAAACGAGCAATAAAGGATAGGGATGTTTTATTCTTCCTGGAATTTTGTATAGCCGAAATCCTATCAGATATTGAGTGTGTTTATAGGCCAATGTTAATTCATTCAAGAGCGTTACAAACTTAATACAATATACAATGTACTTATAAATTAGAACACAATGTTACTGAAAAAACACTTCTGAAGAATTATTTGTAACTTCCTGCTGGTAC]


>consensus_12969#0 TTCGATCCAACCCGCGAAGAGAGCCCCCGCTTCTCCCCATCCAATTCCGCCACCTGCTCG TTCTCCCAGTTCCTCCTCGCCGCCCCAGCTGACGACGGCCACCTCTGTTCGATCCACCGC TGACTGGTCCCCCCCGCTCCTGGTTTCGGGGGCGGTTCTTCGATTCTTGAGATCTTAGCT CCTTCTTCGACGGCCTCACCGCTGCCATGGGCAAGAGTAAGAAAAACAAGGGTGGTCGAG GAGGCGGCGGCGGTGGTGGAGAGGACCAATTTGACGGAGGTAGTGACGTGGATAGCGTGA GTTCGGTGTCGACGGCGCTGTCCGACCTCCAGCTCGCGCAGGCCACCGAGCAAGTTAGCT CGCAGGATTTTGTTCTTGACAAATACATCGACGATCTCTATGAGAAGAGGGGATCCACAA GAGAGGCAGCATTAGGCGCTCTTGTTGATGCTTTTGAAAGTTTTGTGCTACTTGATTTAG TGGAAAACAAGTATGCCACACTTTTGAGCCAATTTATCAATTCAATAAAAAAAGGATCCA TAAAGGAGGTCTGTCTGGCTTGTCACACCACTGGCTTACTGGCCATTACACTTGGTGCTG GAAGTAGTTCTCATGAAATAATGGATGAATCCCGTCTGCAGCTTCTGAGAGTCCTCCAAA CTTGGCCTGATGCTTCAAAAATGATATCTGCACTTGATTGCTTAGCTGTTGTCACATTTG TTGGTGCAACTGATCTATCTGAAACCCAGCTATCTATGAAAGCCATCTGGGATGTGATTC ACCCTAAGTCAGGATCCAATGTTGGAATTGTCAGAAAACCAAAGCCTCCCTTGTTAGCAG CTGCTGTGTCTGCATGGGCACTTCTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTG ACTCTTGGAAAGAGTCAATTACATTTCTTTCTGCTCTTCTAGAAGCGGAGGACCGTGCTG TGCGGATGGCTGCTGGTGAAGCATTAGCACTGTGCTTCGAGTTAAAACTGCTTGATGTTT TCTCCAATGAAGAAGTTGAGGTGGACACTGCAGAAGCTAGTGGTTCTAAGAACCAACTTT TCTTGAATATGCAAGCATTGAAGGCCAAAATATCTGGTCTAGTCTATAATCTCTCTATGG AAGCGGGGGGAAGAGGTGCTGACAAGAAAAATCTGAATGATCAAAGAGACTTATTCCAAC GAATCTCAGATTTTATTAAGACTGGTGAGTGCCTTGAAGAATCACTTAGAATTGCAGGCA AGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAGTTGAACTATTTGAGGC GGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAAGACAATGGATTGCTACATGATATCT TTGACATCAAAATGGATAAAACTGAAAACATGTCAACCACTGAAAAGAAAATCTATAGGT CTGGAGAAGAGAAAGGAAGAGCTCTAAAGTTGAATAAGGAGCGTCGTTTAGCCCAAATGA GGAAGCAAAATATCTTAAACGAGCAATAAAGGATAGGGATGTTCTATTCTTCCTGGAATT TTGTATAGCCGAAATCCTATCAGATATTGAGTGTGTTTATAGGCCAATGTTAATTCATTC AAGAGCGTTACAAACTTAATACAATATACAATGTACTTATAAATTAGAACACAATGTTAC TGAAAAAACACTTCTGAAGAATTATTTGTAACTTCCTGCTGGTAC



consensusID : consensus_12969#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence
                              [GCATTAGCACTGTGCTTCGAGTTAAAACTGCTTGATGTTTTCTCCAATGAAGAAGTTGAGGTGGACACTGCAGAAGCTAGTGGTTCTAAGAACCAACTTTTCTTGAATATGCAAGCATTGAAGNNGGCGAAGAGATAAATCGTGGGTCCTGAGGTCTATTAAATCTTCTCCTATGGGAACGGGGGGGAAANAAGAGAGGCACGCGACGAGGGGTGCGGGGAGGAGTAGGGCGAGGAAGCACAGGGACCGGCCGGGGCGCGAGGGGCGGGGAAGCGGGCGGCGGCGGGATGGGCGGCGCCTGGGGCCCCCAACAGAAGAAAAAACCTTTGTGGGTGGGGTTCACAAGAGAAAGGAGTTTTTGTTTTTTTCTCTCGAAAGAGACTCTGCCGCGCGCAGAGGACTTGTTTTTTAAAACACAAGCGGCGGGAGGAGGCCTTCCCTCGAAAACAACCCACCCTTTCGAATCTGTGGGGGTGCGGGGAGGCGGGGGGGGGGTTTTTTTTTATCCAACACGTATACCGCGGGGGGGGGGGAGACCACANCGCNCGAGTAAATATATCTTTGGGNGGGGCCCGCCCCCCCGCGGCGGGGAGGACGTCGTTGTCGCGCNAGNCTTCGTCTCGGCGNACGAGCG]

[+] EMBL CA755535             [GCATTAGCACTGTGCTTCGAGTTAAAACTGCTTGATGTTTTCTCCAATGAAGAAGTTGAGGTGGACACTGCAGAAGCTAGTGGTTCTAAGAACCAACTTTTCTTGAATATGCAAGCATTGAAGNNGGCGAAGAGATAAATCGTGGGTCCTGAGGTCTATTAAATCTTCTCCTATGGGAACGGGGGGGAAANAAGAGAGGCACGCGACGAGGGGTGCGGGGAGGAGTAGGGCGAGGAAGCACAGGGACCGGCCGGGGCGCGAGGGGCGGGGAAGCGGGCGGCGGCGGGATGGGCGGCGCCTGGGGCCCCCAACAGAAGAAAAAACCTTTGTGGGTGGGGTTCACAAGAGAAAGGAGTTTTTGTTTTTTTCTCTCGAAAGAGACTCTGCCGCGCGCAGAGGACTTGTTTTTTAAAACACAAGCGGCGGGAGGAGGCCTTCCCTCGAAAACAACCCACCCTTTCGAATCTGTGGGGGTGCGGGGAGGCGGGGGGGGGGTTTTTTTTTATCCAACACGTATACCGCGGGGGGGGGGGAGACCACANCGCNCGAGTAAATATATCTTTGGGNGGGGCCCGCCCCCCCGCGGCGGGGAGGACGTCGTTGTCGCGCNAGNCTTCGTCTCGGCGNACGAGCG]


>consensus_12969#1 GCATTAGCACTGTGCTTCGAGTTAAAACTGCTTGATGTTTTCTCCAATGAAGAAGTTGAG GTGGACACTGCAGAAGCTAGTGGTTCTAAGAACCAACTTTTCTTGAATATGCAAGCATTG AAGNNGGCGAAGAGATAAATCGTGGGTCCTGAGGTCTATTAAATCTTCTCCTATGGGAAC GGGGGGGAAANAAGAGAGGCACGCGACGAGGGGTGCGGGGAGGAGTAGGGCGAGGAAGCA CAGGGACCGGCCGGGGCGCGAGGGGCGGGGAAGCGGGCGGCGGCGGGATGGGCGGCGCCT GGGGCCCCCAACAGAAGAAAAAACCTTTGTGGGTGGGGTTCACAAGAGAAAGGAGTTTTT GTTTTTTTCTCTCGAAAGAGACTCTGCCGCGCGCAGAGGACTTGTTTTTTAAAACACAAG CGGCGGGAGGAGGCCTTCCCTCGAAAACAACCCACCCTTTCGAATCTGTGGGGGTGCGGG GAGGCGGGGGGGGGGTTTTTTTTTATCCAACACGTATACCGCGGGGGGGGGGGAGACCAC ANCGCNCGAGTAAATATATCTTTGGGNGGGGCCCGCCCCCCCGCGGCGGGGAGGACGTCG TTGTCGCGCNAGNCTTCGTCTCGGCGNACGAGCG



consensusID : consensus_12969#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 297
fasta sequence
                              [TCGTTTAGCCCCAATGAGGAACCCAAATGTCTTAACGACCCATATAAGGATAGGGATGTTCTATTCTTCCTGGAATTTTGTATACCCGAAATCCTATCAGATATTGAGTGTGCTTTATAGCCCCATGTTAATTCATTCAAGAGCGTTACCAACGTAATACCATATCACCATGTACTTATAAATTAGAACCCCATGTTACTGAAAAAACCCTTGCTGGAAGAATTATTTGGAACTTCCTGCTGGGACACGCAGANTTAAACACCCGTNGGTCTAAACAGNATTGGTCCCCTTCGTAAA]

[+] EMBL BI806059             [TCGTTTAGCCCCAATGAGGAACCCAAATGTCTTAACGACCCATATAAGGATAGGGATGTTCTATTCTTCCTGGAATTTTGTATACCCGAAATCCTATCAGATATTGAGTGTGCTTTATAGCCCCATGTTAATTCATTCAAGAGCGTTACCAACGTAATACCATATCACCATGTACTTATAAATTAGAACCCCATGTTACTGAAAAAACCCTTGCTGGAAGAATTATTTGGAACTTCCTGCTGGGACACGCAGANTTAAACACCCGTNGGTCTAAACAGNATTGGTCCCCTTCGTAAA]


>consensus_12969#2 TCGTTTAGCCCCAATGAGGAACCCAAATGTCTTAACGACCCATATAAGGATAGGGATGTT CTATTCTTCCTGGAATTTTGTATACCCGAAATCCTATCAGATATTGAGTGTGCTTTATAG CCCCATGTTAATTCATTCAAGAGCGTTACCAACGTAATACCATATCACCATGTACTTATA AATTAGAACCCCATGTTACTGAAAAAACCCTTGCTGGAAGAATTATTTGGAACTTCCTGC TGGGACACGCAGANTTAAACACCCGTNGGTCTAAACAGNATTGGTCCCCTTCGTAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12969#0      TTCGATCCAACCCGCGAAGAGAGCCCCCGCTTCTCCCCATCCAATTCCGCCACCTGCTCG 60
consensus_12969#2      ------------------------------------------------------------
consensus_12969#1      ------------------------------------------------------------
                                                                                   

consensus_12969#0      TTCTCCCAGTTCCTCCTCGCCGCCCCAGCTGACGACGGCCACCTCTGTTCGATCCACCGC 120
consensus_12969#2      ------------------------------------------------------------
consensus_12969#1      ------------------------------------------------------------
                                                                                   

consensus_12969#0      TGACTGGTCCCCCCCGCTCCTGGTTTCGGGGGCGGTTCTTCGATTCTTGAGATCTTAGCT 180
consensus_12969#2      ------------------------------------------------------------
consensus_12969#1      ------------------------------------------------------------
                                                                                   

consensus_12969#0      CCTTCTTCGACGGCCTCACCGCTGCCATGGGCAAGAGTAAGAAAAACAAGGGTGGTCGAG 240
consensus_12969#2      ------------------------------------------------------------
consensus_12969#1      ------------------------------------------------------------
                                                                                   

consensus_12969#0      GAGGCGGCGGCGGTGGTGGAGAGGACCAATTTGACGGAGGTAGTGACGTGGATAGCGTGA 300
consensus_12969#2      ------------------------------------------------------------
consensus_12969#1      ------------------------------------------------------------
                                                                                   

consensus_12969#0      GTTCGGTGTCGACGGCGCTGTCCGACCTCCAGCTCGCGCAGGCCACCGAGCAAGTTAGCT 360
consensus_12969#2      ------------------------------------------------------------
consensus_12969#1      ------------------------------------------------------------
                                                                                   

consensus_12969#0      CGCAGGATTTTGTTCTTGACAAATACATCGACGATCTCTATGAGAAGAGGGGATCCACAA 420
consensus_12969#2      ------------------------------------------------------------
consensus_12969#1      ------------------------------------------------------------
                                                                                   

consensus_12969#0      GAGAGGCAGCATTAGGCGCTCTTGTTGATGCTTTTGAAAGTTTTGTGCTACTTGATTTAG 480
consensus_12969#2      ------------------------------------------------------------
consensus_12969#1      ------------------------------------------------------------
                                                                                   

consensus_12969#0      TGGAAAACAAGTATGCCACACTTTTGAGCCAATTTATCAATTCAATAAAAAAAGGATCCA 540
consensus_12969#2      ------------------------------------------------------------
consensus_12969#1      ------------------------------------------------------------
                                                                                   

consensus_12969#0      TAAAGGAGGTCTGTCTGGCTTGTCACACCACTGGCTTACTGGCCATTACACTTGGTGCTG 600
consensus_12969#2      ------------------------------------------------------------
consensus_12969#1      ------------------------------------------------------------
                                                                                   

consensus_12969#0      GAAGTAGTTCTCATGAAATAATGGATGAATCCCGTCTGCAGCTTCTGAGAGTCCTCCAAA 660
consensus_12969#2      ------------------------------------------------------------
consensus_12969#1      ------------------------------------------------------------
                                                                                   

consensus_12969#0      CTTGGCCTGATGCTTCAAAAATGATATCTGCACTTGATTGCTTAGCTGTTGTCACATTTG 720
consensus_12969#2      ------------------------------------------------------------
consensus_12969#1      ------------------------------------------------------------
                                                                                   

consensus_12969#0      TTGGTGCAACTGATCTATCTGAAACCCAGCTATCTATGAAAGCCATCTGGGATGTGATTC 780
consensus_12969#2      ------------------------------------------------------------
consensus_12969#1      ------------------------------------------------------------
                                                                                   

consensus_12969#0      ACCCTAAGTCAGGATCCAATGTTGGAATTGTCAGAAAACCAAAGCCTCCCTTGTTAGCAG 840
consensus_12969#2      ------------------------------------------------------------
consensus_12969#1      ------------------------------------------------------------
                                                                                   

consensus_12969#0      CTGCTGTGTCTGCATGGGCACTTCTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTG 900
consensus_12969#2      ------------------------------------------------------------
consensus_12969#1      ------------------------------------------------------------
                                                                                   

consensus_12969#0      ACTCTTGGAAAGAGTCAATTACATTTCTTTCTGCTCTTCTAGAAGCGGAGGACCGTGCTG 960
consensus_12969#2      ------------------------------------------------------------
consensus_12969#1      ------------------------------------------------------------
                                                                                   

consensus_12969#0      TGCGGATGGCTGCTGGTGAAGCATTAGCACTGTGCTTCGAGTTAAAACTGCTTGATGTTT 1020
consensus_12969#2      ------------------------------------------------------------
consensus_12969#1      --------------------GCATTAGCACTGTGCTTCGAGTTAAAACTGCTTGATGTTT 40
                                                                                   

consensus_12969#0      TCTCCAATGAAGAAGTTGAGGTGGACACTGCAGAAGCTAGTGGTTCTAAGAACCAACTTT 1080
consensus_12969#2      ------------------------------------------------------------
consensus_12969#1      TCTCCAATGAAGAAGTTGAGGTGGACACTGCAGAAGCTAGTGGTTCTAAGAACCAACTTT 100
                                                                                   

consensus_12969#0      TCTTGAATATGCAAGCATTGAAGGCCAAAATATCTGGTCTAGTCTATAATCTCTCTATGG 1140
consensus_12969#2      ------------------------------------------------------------
consensus_12969#1      TCTTGAATATGCAAGCATTGAAGNN----------------------------------- 125
                                                                                   

consensus_12969#0      AAGCGGGGGGAAGAGGTGCTGACAAGAAAAATCTGAATGATCAAAGAGACTTATTCCAAC 1200
consensus_12969#2      ------------------------------------------------------------
consensus_12969#1      -GGCGAAGAGATAAATCGTGGGT--------CCTGA--GGTCTATTAAATCTTCTCCTAT 174
                                                                                   

consensus_12969#0      GAATCTCAGATTTTATTAAGACTGGTGAGTGCCTTGAAGAATCACTTAGAATTGCAGGCA 1260
consensus_12969#2      ------------------------------------------------------------
consensus_12969#1      GGGAACGGGGGGGAAANAAGAGAGGCACGCGAC---GAGGGGTGCGGGGAGGAGTAGG-- 229
                                                                                   

consensus_12969#0      AGCATGGTATTTTAAGAGTTACATCATGGCGTGAATCAATACAGTTGAACTATTTGAGGC 1320
consensus_12969#2      ------------------------------------------------------------
consensus_12969#1      -GCGAGGAAGCACAGGGACCG-GCCGGGGCGCGA------GGGGCGGGGAAGCGGGCGGC 281
                                                                                   

consensus_12969#0      GGTTCCTTGGGCGAGGATTTCTGAAGCATGCACAAGACAATGGATTGCTACATGATATCT 1380
consensus_12969#2      ------------------------------------------------------------
consensus_12969#1      GGCGGGATGGGCGGCG---CCTGGGGCCCCCAACAGAAGAAAAAACCTTTGTGGGTGGGG 338
                                                                                   

consensus_12969#0      TTGACATCAAAATGGATAAAACTGAAAACATGTCAACCACTGAAAAGAAAATCTATAGGT 1440
consensus_12969#2      ------------------------------------------------------------
consensus_12969#1      TTCACAAGAGAAAGGA-------GTTTTTGTTTTTTTCTCTCGAAAGAGACTCTGCCGC- 390
                                                                                   

consensus_12969#0      CTGGAGAAGAGAAAGGAAGAGCTCTAAAGTTGAATAAGGAGCGTCGTTTAGCCCAAATGA 1500
consensus_12969#2      -------------------------------------------TCGTTTAGCCCCAATGA 17
consensus_12969#1      -----GCGCAGAGGACTTGTTTTTTAAAAC---ACAAGCGGCGGGAGGAGGCCTTCCCTC 442
                                                                         ***       

consensus_12969#0      GGAAGCAAAATATCTTAAACGAGCAATA-AAGGATAGGGATGTTCTATTCTTCCTGGAAT 1559
consensus_12969#2      GGAACCCAAATGTCTTAA-CGACCCATATAAGGATAGGGATGTTCTATTCTTCCTGGAAT 76
consensus_12969#1      GAAAACAACCCACCCTTTCGAATCTGTGGGGGTGCGGGGAGGCGGGGGGG-----GGGTT 497
                       * ** * *     * *     * *  *    *    **** *             **  *

consensus_12969#0      TTTGTATAGCCGAAATCC-TATCAGATATTGAGTGTG-TTTATAG-GCCAATGTTAATTC 1616
consensus_12969#2      TTTGTATACCCGAAATCC-TATCAGATATTGAGTGTGCTTTATAG-CCCCATGTTAATTC 134
consensus_12969#1      TTTTTTTATCCAACACGTATACCGCGGGGGGGGGGGAGACCACANCGCNCGAGTAAATAT 557
                       *** * ** ** * *    ** *       * * *      * *   *    ** ***  

consensus_12969#0      ATTCAAGAGCGTTACAAACTTAAT-ACAATAT--ACAATGTACTTATAAATTAGAACACA 1673
consensus_12969#2      ATTCAAGAGCGTTACCAACGTAAT-ACCATATC-ACCATGTACTTATAAATTAGAACCCC 192
consensus_12969#1      ATCTTTGGGNGGGGCCCGCCCCCCCGCGGCGGGGAGGACGTCGTTGTCGCGCNAGNCTTC 617
                       **    * * *   *   *       *       *  * **  ** *         *   

consensus_12969#0      ATGTTACTGAAAAAACACTTCT--GAAGAATTATTTGTAACTTCCTGCTGGTAC------ 1725
consensus_12969#2      ATGTTACTGAAAAAACCCTTGCTGGAAGAATTATTTGGAACTTCCTGCTGGGACACGCAG 252
consensus_12969#1      GTCTCGGCGNACGAGCG------------------------------------------- 634
                        * *    * *  * *                                            

consensus_12969#0      ---------------------------------------------
consensus_12969#2      ANTTAAACACCCGTNGGTCTAAACAGNATTGGTCCCCTTCGTAAA 297
consensus_12969#1      ---------------------------------------------
                                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)